BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042232
MAYQQSLNLHIHSFWRSLNCFRKDFSKPQRTGNTLFNIKRFDLARLSSSQFTKGSCSLSN
NLITNVHGVGHANFHSIVTCKKAPSNGRVMLIDGTSIIYRAYYKILLHHGHLSHADGNGD
WVLTIFSALSLIIDVLEFIPSHVV

High Scoring Gene Products

Symbol, full name Information P value
AT3G52050 protein from Arabidopsis thaliana 2.6e-23

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042232
        (144 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2083775 - symbol:AT3G52050 species:3702 "Arabi...   272  2.6e-23   1


>TAIR|locus:2083775 [details] [associations]
            symbol:AT3G52050 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
            activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
            InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR020045
            InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739 SMART:SM00279
            SMART:SM00475 EMBL:CP002686 GO:GO:0003677 GO:GO:0008152
            EMBL:AL049711 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
            IPI:IPI00846770 RefSeq:NP_001078270.1 UniGene:At.50269
            ProteinModelPortal:A8MQG8 SMR:A8MQG8 STRING:A8MQG8 PaxDb:A8MQG8
            PRIDE:A8MQG8 EnsemblPlants:AT3G52050.3 GeneID:824368
            KEGG:ath:AT3G52050 TAIR:At3g52050 HOGENOM:HOG000015113 OMA:HDGVPYG
            PhylomeDB:A8MQG8 ProtClustDB:CLSN2680900 Genevestigator:A8MQG8
            Uniprot:A8MQG8
        Length = 448

 Score = 272 (100.8 bits), Expect = 2.6e-23, P = 2.6e-23
 Identities = 53/68 (77%), Positives = 60/68 (88%)

Query:    78 VTCKKAPSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDV 135
             V    A SNGRVMLIDGTSIIYRAYYK+L  L+HGHL+HADGN DWVLTIFS+LSL+IDV
Sbjct:   108 VASTAASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDV 167

Query:   136 LEFIPSHV 143
             L+F+PSHV
Sbjct:   168 LKFLPSHV 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       144   0.00091  102 3  11 22  0.38    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  151 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.57u 0.14s 13.71t   Elapsed:  00:00:01
  Total cpu time:  13.57u 0.14s 13.71t   Elapsed:  00:00:01
  Start:  Thu May  9 22:27:39 2013   End:  Thu May  9 22:27:40 2013

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