BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042232
(144 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359478321|ref|XP_002275974.2| PREDICTED: DNA polymerase I-like [Vitis vinifera]
gi|296084279|emb|CBI24667.3| unnamed protein product [Vitis vinifera]
Length = 441
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 106/170 (62%), Gaps = 26/170 (15%)
Query: 1 MAYQQSLNLHIHSFWRSLNCFRKDFSKPQRTGNTLFNIKRFDLARLSSSQFTKGSCSLSN 60
MA +S + HI W +LNC+R FS+ Q+ GN ++R +L S KG C+LSN
Sbjct: 1 MACYRSSHHHIRFLWGNLNCWRSSFSRTQKIGNNSCCLQRRNLIHSPSILSRKGCCTLSN 60
Query: 61 NLITNVHGVGHANFHSIVT---------CKKA---------------PSNGRVMLIDGTS 96
+L +++H V H + T C+ A SNGRVMLIDGTS
Sbjct: 61 SLDSSIHEVAHTISYGNTTISSKSERKLCQGAFVDSVDHKERKMDISSSNGRVMLIDGTS 120
Query: 97 IIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVV 144
IIYRAYYK+L LHHG+LSHADGNGDWVLTIF+ALSLI+DVL+FIPSHV
Sbjct: 121 IIYRAYYKLLAKLHHGYLSHADGNGDWVLTIFAALSLIVDVLDFIPSHVA 170
>gi|255579460|ref|XP_002530573.1| hypothetical protein RCOM_0547690 [Ricinus communis]
gi|223529872|gb|EEF31803.1| hypothetical protein RCOM_0547690 [Ricinus communis]
Length = 180
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 101/179 (56%), Gaps = 35/179 (19%)
Query: 1 MAYQQSLNLHIHS-FWRSLNCFRKDFSKPQRTGNTLFNIKRFDLARLSSSQFTKG----- 54
MAY QSLNL + S WR+ N + + +R G+ L N+K SS+ KG
Sbjct: 1 MAYCQSLNLRVQSSLWRNFNYLGEKLKRARRVGSFLSNLKTLVQIHPSSTLSKKGFYGIS 60
Query: 55 ---------SCSLSNNLITNVHGVGH-----ANFHSIVTCKK-------------APSNG 87
+C S + H A F SI ++ +PSNG
Sbjct: 61 STSSALPQDACVTSRSSTFTSSEELHMPHQGAIFDSIKYEERLVNTTSQSDVANSSPSNG 120
Query: 88 RVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVV 144
R+MLIDGTSIIYRAYYK+L LHHGHLS ADGNGDWVLTIFSALSLIIDVLEFIPSHVV
Sbjct: 121 RLMLIDGTSIIYRAYYKLLAKLHHGHLSQADGNGDWVLTIFSALSLIIDVLEFIPSHVV 179
>gi|357475547|ref|XP_003608059.1| DNA polymerase I [Medicago truncatula]
gi|355509114|gb|AES90256.1| DNA polymerase I [Medicago truncatula]
Length = 491
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/69 (82%), Positives = 62/69 (89%), Gaps = 2/69 (2%)
Query: 78 VTCKKAPSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDV 135
VT A +NGRVMLIDGTS+I+RAYYK+L LHHGHL+HADGNGDWVLTIFSALS IIDV
Sbjct: 100 VTNADAAANGRVMLIDGTSVIHRAYYKLLAKLHHGHLAHADGNGDWVLTIFSALSFIIDV 159
Query: 136 LEFIPSHVV 144
LEFIPSHVV
Sbjct: 160 LEFIPSHVV 168
>gi|356502746|ref|XP_003520177.1| PREDICTED: DNA polymerase I, thermostable-like [Glycine max]
Length = 444
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 94/166 (56%), Gaps = 26/166 (15%)
Query: 5 QSLNLHIHSFWRSLNCFR----KDFSKPQRTGNTLFNIKRFDL-----ARLSSS-----Q 50
Q L LH HSFWR L R F+ +T + L + + L R +S
Sbjct: 8 QFLFLHSHSFWRKLPFPRHVTASGFTCNLQTPSLLLSSRSRALLSKGYCRATSESPGAVP 67
Query: 51 FTKGSCSLSNNLITNVH-GVGHANFHSI---------VTCKKAPSNGRVMLIDGTSIIYR 100
T S + S LI G+G ++ + P NGRVM+IDGTSII+R
Sbjct: 68 ATPRSAAASGTLIPEAGIGIGTGTAQALQSGSAGNAELVTNAEPLNGRVMIIDGTSIIHR 127
Query: 101 AYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVV 144
AYYK+L LHHGHL+HADGNGDWVL +F+ALSLIIDVL+FIPSHVV
Sbjct: 128 AYYKLLAKLHHGHLTHADGNGDWVLMMFTALSLIIDVLKFIPSHVV 173
>gi|356519672|ref|XP_003528494.1| PREDICTED: DNA polymerase I, thermostable-like [Glycine max]
Length = 436
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 82/131 (62%), Gaps = 23/131 (17%)
Query: 37 NIKRFDLARLSSSQFTKGSCSLSNNLITNVH--------------GVGHA---NFHSIVT 79
N++ L R S + +KG CS ++ V G+G A S V
Sbjct: 35 NLRTPWLLRSSRAPLSKGYCSATSESPGAVPATPPTAAATLVPGAGIGTARAMQLGSAVN 94
Query: 80 CKKA----PSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLII 133
++ P NGRVM+IDGTSII+RAYYK+L LHHGHL+HADGNGDWVL +F+ALSLII
Sbjct: 95 AERVTNSDPLNGRVMIIDGTSIIHRAYYKLLAKLHHGHLTHADGNGDWVLMMFTALSLII 154
Query: 134 DVLEFIPSHVV 144
DVLEFIPSHVV
Sbjct: 155 DVLEFIPSHVV 165
>gi|297816476|ref|XP_002876121.1| hypothetical protein ARALYDRAFT_485561 [Arabidopsis lyrata subsp.
lyrata]
gi|297321959|gb|EFH52380.1| hypothetical protein ARALYDRAFT_485561 [Arabidopsis lyrata subsp.
lyrata]
Length = 454
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 73/163 (44%), Positives = 96/163 (58%), Gaps = 30/163 (18%)
Query: 6 SLNLHIHS--FWRSLNCFRKDFSKPQRTGNTLFNIKRFDLARLSSSQFTKGSCSL----- 58
+L+L+ HS WR+L CF + ++L + LAR S+ + +C+L
Sbjct: 24 TLHLYHHSRFLWRNL-CFTRRIGNLCNRNSSLISPS---LAR-SAKYYCSSTCNLDAAVS 78
Query: 59 -------SNNLITNVHGVGHANFHSI---------VTCKKAPSNGRVMLIDGTSIIYRAY 102
S N++T+ +I V A SNGRVMLIDGTSIIYRAY
Sbjct: 79 EISNDAASGNMLTSYKSEDVVAPETIKYPFKSEERVASTAASSNGRVMLIDGTSIIYRAY 138
Query: 103 YKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHV 143
YK+L L+HGHL+HADGN DWVLTIFS+LSL+IDVL+F+PSHV
Sbjct: 139 YKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFLPSHV 181
>gi|449453197|ref|XP_004144345.1| PREDICTED: DNA polymerase I-like [Cucumis sativus]
Length = 461
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 58/62 (93%), Gaps = 2/62 (3%)
Query: 84 PSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPS 141
P++ RVMLIDGTSII+RAYYK+L LHHGHLSHADGNGDWVLTIF+ALSLI+DVLE +PS
Sbjct: 128 PADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEIMPS 187
Query: 142 HV 143
HV
Sbjct: 188 HV 189
>gi|42565846|ref|NP_190773.2| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|145362483|ref|NP_974414.2| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|109946597|gb|ABG48477.1| At3g52050 [Arabidopsis thaliana]
gi|332645358|gb|AEE78879.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332645359|gb|AEE78880.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 425
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 60/69 (86%), Gaps = 2/69 (2%)
Query: 78 VTCKKAPSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDV 135
V A SNGRVMLIDGTSIIYRAYYK+L L+HGHL+HADGN DWVLTIFS+LSL+IDV
Sbjct: 85 VASTAASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDV 144
Query: 136 LEFIPSHVV 144
L+F+PSHV
Sbjct: 145 LKFLPSHVA 153
>gi|145332811|ref|NP_001078271.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332645361|gb|AEE78882.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 413
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 60/69 (86%), Gaps = 2/69 (2%)
Query: 78 VTCKKAPSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDV 135
V A SNGRVMLIDGTSIIYRAYYK+L L+HGHL+HADGN DWVLTIFS+LSL+IDV
Sbjct: 85 VASTAASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDV 144
Query: 136 LEFIPSHVV 144
L+F+PSHV
Sbjct: 145 LKFLPSHVA 153
>gi|145332809|ref|NP_001078270.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332645360|gb|AEE78881.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 448
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 60/69 (86%), Gaps = 2/69 (2%)
Query: 78 VTCKKAPSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDV 135
V A SNGRVMLIDGTSIIYRAYYK+L L+HGHL+HADGN DWVLTIFS+LSL+IDV
Sbjct: 108 VASTAASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDV 167
Query: 136 LEFIPSHVV 144
L+F+PSHV
Sbjct: 168 LKFLPSHVA 176
>gi|238480047|ref|NP_001154673.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332645362|gb|AEE78883.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 365
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/68 (77%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Query: 78 VTCKKAPSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDV 135
V A SNGRVMLIDGTSIIYRAYYK+L L+HGHL+HADGN DWVLTIFS+LSL+IDV
Sbjct: 108 VASTAASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDV 167
Query: 136 LEFIPSHV 143
L+F+PSHV
Sbjct: 168 LKFLPSHV 175
>gi|449480947|ref|XP_004156037.1| PREDICTED: DNA polymerase I, thermostable-like [Cucumis sativus]
Length = 112
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 58/62 (93%), Gaps = 2/62 (3%)
Query: 84 PSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPS 141
P++ RVMLIDGTSII+RAYYK+L LHHGHLSHADGNGDWVLTIF+ALSLI+DVLE +PS
Sbjct: 41 PADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLIVDVLEIMPS 100
Query: 142 HV 143
HV
Sbjct: 101 HV 102
>gi|226530274|ref|NP_001151880.1| DNA polymerase I [Zea mays]
gi|195650551|gb|ACG44743.1| DNA polymerase I [Zea mays]
Length = 422
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 78/138 (56%), Gaps = 28/138 (20%)
Query: 17 SLNCFRKDFSKPQR----------TGNTLFNIKRFDLARLSSSQFTKGSCSLSNNLITNV 66
LN FRK FS+ G ++ N R L S S S+ + L
Sbjct: 28 PLNVFRKGFSEQSVLPVTDSIECFQGPSVPNTPRIPLYDDSVS------SSILDTLSNPT 81
Query: 67 HGVGHANFHSIVTCKKAPSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLT 124
GV HA+ PS R+ML+DGTS++YR+YYKIL L HG L HADGNGDWVLT
Sbjct: 82 GGVPHAD----------PSKSRIMLVDGTSMMYRSYYKILAQLQHGQLEHADGNGDWVLT 131
Query: 125 IFSALSLIIDVLEFIPSH 142
IF ALSL++D+LEFIPSH
Sbjct: 132 IFKALSLLLDMLEFIPSH 149
>gi|194696700|gb|ACF82434.1| unknown [Zea mays]
gi|195654367|gb|ACG46651.1| DNA polymerase I [Zea mays]
gi|413956435|gb|AFW89084.1| DNA polymerase I [Zea mays]
Length = 422
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 78/138 (56%), Gaps = 28/138 (20%)
Query: 17 SLNCFRKDFSKPQR----------TGNTLFNIKRFDLARLSSSQFTKGSCSLSNNLITNV 66
LN FRK FS+ G ++ N R L S S S+ + L
Sbjct: 28 PLNVFRKGFSEQSVLPVTDSIECFQGPSVPNTPRIPLYDDSVS------SSILDTLSNPT 81
Query: 67 HGVGHANFHSIVTCKKAPSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLT 124
GV HA+ PS R+ML+DGTS++YR+YYKIL L HG L HADGNGDWVLT
Sbjct: 82 GGVPHAD----------PSKSRIMLVDGTSMMYRSYYKILAQLQHGQLEHADGNGDWVLT 131
Query: 125 IFSALSLIIDVLEFIPSH 142
IF ALSL++D+LEFIPSH
Sbjct: 132 IFKALSLLLDMLEFIPSH 149
>gi|413956436|gb|AFW89085.1| hypothetical protein ZEAMMB73_456847 [Zea mays]
Length = 163
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 78/140 (55%), Gaps = 28/140 (20%)
Query: 17 SLNCFRKDFSKPQR----------TGNTLFNIKRFDLARLSSSQFTKGSCSLSNNLITNV 66
LN FRK FS+ G ++ N R L S S S+ + L
Sbjct: 28 PLNVFRKGFSEQSVLPVTDSIECFQGPSVPNTPRIPLYDDSVSS------SILDTLSNPT 81
Query: 67 HGVGHANFHSIVTCKKAPSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLT 124
GV HA+ PS R+ML+DGTS++YR+YYKIL L HG L HADGNGDWVLT
Sbjct: 82 GGVPHAD----------PSKSRIMLVDGTSMMYRSYYKILAQLQHGQLEHADGNGDWVLT 131
Query: 125 IFSALSLIIDVLEFIPSHVV 144
IF ALSL++D+LEFIPSH
Sbjct: 132 IFKALSLLLDMLEFIPSHAA 151
>gi|115451687|ref|NP_001049444.1| Os03g0227300 [Oryza sativa Japonica Group]
gi|108706959|gb|ABF94754.1| 5'-3' exonuclease, N-terminal resolvase-like domain containing
protein, expressed [Oryza sativa Japonica Group]
gi|113547915|dbj|BAF11358.1| Os03g0227300 [Oryza sativa Japonica Group]
gi|215704203|dbj|BAG93043.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624502|gb|EEE58634.1| hypothetical protein OsJ_10000 [Oryza sativa Japonica Group]
Length = 421
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 53/61 (86%), Gaps = 2/61 (3%)
Query: 84 PSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPS 141
PS R+ML+DGTS++YR+YYKIL L HG L HADGNGDWVLTIF ALSL++D+LEFIPS
Sbjct: 88 PSKSRIMLVDGTSVMYRSYYKILAQLQHGQLEHADGNGDWVLTIFKALSLVLDMLEFIPS 147
Query: 142 H 142
H
Sbjct: 148 H 148
>gi|218192373|gb|EEC74800.1| hypothetical protein OsI_10602 [Oryza sativa Indica Group]
Length = 421
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 53/61 (86%), Gaps = 2/61 (3%)
Query: 84 PSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPS 141
PS R+ML+DGTS++YR+YYKIL L HG L HADGNGDWVLTIF ALSL++D+LEFIPS
Sbjct: 88 PSKSRIMLVDGTSVMYRSYYKILAQLQHGQLEHADGNGDWVLTIFKALSLVLDMLEFIPS 147
Query: 142 H 142
H
Sbjct: 148 H 148
>gi|108706960|gb|ABF94755.1| 5'-3' exonuclease, N-terminal resolvase-like domain containing
protein, expressed [Oryza sativa Japonica Group]
Length = 416
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 53/61 (86%), Gaps = 2/61 (3%)
Query: 84 PSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPS 141
PS R+ML+DGTS++YR+YYKIL L HG L HADGNGDWVLTIF ALSL++D+LEFIPS
Sbjct: 83 PSKSRIMLVDGTSVMYRSYYKILAQLQHGQLEHADGNGDWVLTIFKALSLVLDMLEFIPS 142
Query: 142 H 142
H
Sbjct: 143 H 143
>gi|242036411|ref|XP_002465600.1| hypothetical protein SORBIDRAFT_01g041870 [Sorghum bicolor]
gi|241919454|gb|EER92598.1| hypothetical protein SORBIDRAFT_01g041870 [Sorghum bicolor]
Length = 421
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 62/90 (68%), Gaps = 12/90 (13%)
Query: 55 SCSLSNNLITNVHGVGHANFHSIVTCKKAPSNGRVMLIDGTSIIYRAYYKIL--LHHGHL 112
S S+ + L V HA+ PS R+ML+DGTS++YR+YYKIL L HG L
Sbjct: 70 SSSILDTLSNPTEVVPHAD----------PSKSRIMLVDGTSVMYRSYYKILAQLQHGQL 119
Query: 113 SHADGNGDWVLTIFSALSLIIDVLEFIPSH 142
HADGNGDWVLTIF ALSL++D+LEFIPSH
Sbjct: 120 EHADGNGDWVLTIFKALSLLLDMLEFIPSH 149
>gi|224121808|ref|XP_002330658.1| predicted protein [Populus trichocarpa]
gi|222872262|gb|EEF09393.1| predicted protein [Populus trichocarpa]
Length = 310
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/57 (80%), Positives = 52/57 (91%), Gaps = 2/57 (3%)
Query: 90 MLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVV 144
MLIDGTS+IYRAY+K+L +HHGHL+HADGNGDWVLTIFSALS IIDVL F+PSH V
Sbjct: 1 MLIDGTSVIYRAYFKLLAKVHHGHLTHADGNGDWVLTIFSALSFIIDVLGFMPSHAV 57
>gi|24421685|gb|AAN60992.1| Unknown protein [Oryza sativa Japonica Group]
Length = 443
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/83 (54%), Positives = 53/83 (63%), Gaps = 24/83 (28%)
Query: 84 PSNGRVMLIDGTSIIYRAYYKIL------------------------LHHGHLSHADGNG 119
PS R+ML+DGTS++YR+YYKIL L HG L HADGNG
Sbjct: 88 PSKSRIMLVDGTSVMYRSYYKILGKCFLILFVTSVLVYYVWLLLLIKLQHGQLEHADGNG 147
Query: 120 DWVLTIFSALSLIIDVLEFIPSH 142
DWVLTIF ALSL++D+LEFIPSH
Sbjct: 148 DWVLTIFKALSLVLDMLEFIPSH 170
>gi|4678934|emb|CAB41325.1| putative protein [Arabidopsis thaliana]
Length = 384
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 50/58 (86%), Gaps = 2/58 (3%)
Query: 78 VTCKKAPSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLII 133
V A SNGRVMLIDGTSIIYRAYYK+L L+HGHL+HADGN DWVLTIFS+LSL++
Sbjct: 108 VASTAASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLVV 165
>gi|148906869|gb|ABR16580.1| unknown [Picea sitchensis]
Length = 400
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 53/62 (85%), Gaps = 2/62 (3%)
Query: 85 SNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSH 142
+NGR+MLIDGT+ +YRAYY+++ LH+G+L HADGNGDWVL+IF ALS ++D+LE PSH
Sbjct: 110 ANGRLMLIDGTAAMYRAYYQLMASLHYGNLEHADGNGDWVLSIFKALSTMLDMLELCPSH 169
Query: 143 VV 144
+
Sbjct: 170 IA 171
>gi|357113266|ref|XP_003558425.1| PREDICTED: DNA polymerase I-like [Brachypodium distachyon]
Length = 419
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 53/62 (85%), Gaps = 2/62 (3%)
Query: 84 PSNGRVMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPS 141
PS R+ML+DGTS++YR+YYKIL L HG L HADGNGDWVLTIF ALSL++D+LE IPS
Sbjct: 86 PSKSRIMLVDGTSVMYRSYYKILAQLQHGQLEHADGNGDWVLTIFKALSLLLDMLELIPS 145
Query: 142 HV 143
HV
Sbjct: 146 HV 147
>gi|147858394|emb|CAN81408.1| hypothetical protein VITISV_010447 [Vitis vinifera]
Length = 734
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/37 (89%), Positives = 37/37 (100%)
Query: 107 LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHV 143
LHHG+LSHADGNGDWVLTIF+ALSLI+DVL+FIPSHV
Sbjct: 18 LHHGYLSHADGNGDWVLTIFAALSLIVDVLDFIPSHV 54
>gi|302818496|ref|XP_002990921.1| hypothetical protein SELMODRAFT_44782 [Selaginella moellendorffii]
gi|300141252|gb|EFJ07965.1| hypothetical protein SELMODRAFT_44782 [Selaginella moellendorffii]
Length = 363
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 85 SNGRVMLIDGTSIIYRAYYKILL--HHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSH 142
S GR++L+DG+++I+RAYYK++ HH + + DWVLT+F+A + I+ +L+ PSH
Sbjct: 12 SKGRILLVDGSAVIFRAYYKVMAKAHHNLIPELESEADWVLTVFTAFTTILGLLDLSPSH 71
>gi|302802031|ref|XP_002982771.1| hypothetical protein SELMODRAFT_54861 [Selaginella moellendorffii]
gi|300149361|gb|EFJ16016.1| hypothetical protein SELMODRAFT_54861 [Selaginella moellendorffii]
Length = 363
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 85 SNGRVMLIDGTSIIYRAYYKILL--HHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSH 142
S GR++L+DG+++I+RAYYK++ HH + + DWVLT+F+A + I+ +L+ PSH
Sbjct: 12 SKGRILLVDGSAVIFRAYYKVMAKAHHNLIPELESEADWVLTVFTAFTTILGLLDLSPSH 71
>gi|168027127|ref|XP_001766082.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682725|gb|EDQ69141.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 310
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 89 VMLIDGTSIIYRAYYKIL--LHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHV 143
++L+DG +I+YRAY+KI+ + +G L DWVLT+F+ALS +I +L+ P+HV
Sbjct: 1 LLLLDGNAILYRAYFKIMAKVQYGSLKDMGSEADWVLTVFTALSTMIRLLDTKPTHV 57
>gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
Length = 871
Score = 38.9 bits (89), Expect = 0.75, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 88 RVMLIDGTSIIYRAYYKILLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVV 144
RVM+IDG S++YRA+Y + L G + ++ L+++ VL E+ PSH++
Sbjct: 5 RVMIIDGNSLLYRAFYALPLLRNR------RGTFTNAVYGFLNMLSKVLSEYQPSHII 56
>gi|303285890|ref|XP_003062235.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456646|gb|EEH53947.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 565
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 87 GRVMLIDGTSIIYRAYYKILLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHV 143
G V L+DG S+++RA+Y L+ NG+ + ++S I+ +LE PSHV
Sbjct: 166 GHVALVDGMSLVFRAFYGWRNREPLLA---TNGEDLSVMYSVTHAILAILELAPSHV 219
>gi|408388495|gb|EKJ68179.1| hypothetical protein FPSE_11646 [Fusarium pseudograminearum CS3096]
Length = 827
Score = 35.4 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 43 LARLSSSQFTKGSCSLSNNLITNVHGVGHANFHSIVTCKKAPSNGRVMLIDGTSIIYRAY 102
LA +S Q+ + C +NL+ ++ G+ N SI+ C+ G ++ ++ +A+
Sbjct: 570 LAIISKQQYARAFC---DNLVEHL-ATGYIN--SIIQCRPISEVGAEQMLLDKYVLTKAF 623
Query: 103 YKILLHHGHLSHADG 117
K+++HH LS D
Sbjct: 624 EKLIMHHASLSEQDA 638
>gi|342180964|emb|CCC90441.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 543
Score = 35.4 bits (80), Expect = 7.2, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 12 HSFWRSLNCFRKDFSKPQRTGNTLFNIKRFDLARLSSSQFTKGSCSLSNNLITNVHGVGH 71
HS ++LN F ++ + R G+ + + L LS + + S NN+++N
Sbjct: 223 HSIEQTLNGFDEEIPRAVRGGSAMRDTFSTALQLLSRTPGWRRDVSKGNNIVSN-----W 277
Query: 72 ANFHSIVTCKKAPSNGRVMLIDGTSIIY 99
+ + V C K PS G V+ DG I++
Sbjct: 278 LHLRNDVLCGKLPSVGSVVSCDGRGILF 305
>gi|46107976|ref|XP_381046.1| hypothetical protein FG00870.1 [Gibberella zeae PH-1]
Length = 827
Score = 35.4 bits (80), Expect = 7.3, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 43 LARLSSSQFTKGSCSLSNNLITNVHGVGHANFHSIVTCKKAPSNGRVMLIDGTSIIYRAY 102
LA +S Q+ + C +NL+ ++ G+ N SI+ C+ G ++ ++ +A+
Sbjct: 570 LAIISKQQYARAFC---DNLVEHL-ATGYIN--SIIQCRPISEVGAEQMLLDKYVLTKAF 623
Query: 103 YKILLHHGHLSHADG 117
K+++HH LS D
Sbjct: 624 EKLIMHHASLSEQDA 638
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,276,987,905
Number of Sequences: 23463169
Number of extensions: 84510375
Number of successful extensions: 221089
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 221027
Number of HSP's gapped (non-prelim): 36
length of query: 144
length of database: 8,064,228,071
effective HSP length: 108
effective length of query: 36
effective length of database: 9,825,173,115
effective search space: 353706232140
effective search space used: 353706232140
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 71 (32.0 bits)