BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042232
         (144 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TUJ|A Chain A, Solution Structure Of The Honey Bee General Odorant
           Binding Protein Asp2 In Complex With Trimethylsilyl-D4
           Propionate
          Length = 123

 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 58  LSNNLITNVHGVGHANFHSIVTCKKAPSNGRVMLIDGTSIIYRAYYKILLHHGHLSHADG 117
           +S ++ TN+    +    S + C KA    R+ ++ GT +     YK++     + HA G
Sbjct: 27  ISEDIATNIQAAKNGADMSQLGCLKACVMKRIEMLKGTELYVEPVYKMI----EVVHA-G 81

Query: 118 NGDWV 122
           N D +
Sbjct: 82  NADDI 86


>pdb|3KSR|A Chain A, Crystal Structure Of A Putative Serine Hydrolase
          (Xcc3885) From Xanthomonas Campestris Pv. Campestris At
          2.69 A Resolution
          Length = 290

 Score = 27.7 bits (60), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 44 ARLSSSQFTKGSCSLSNNLITN--------VHGVGHANFHSIVTCKKA 83
          A+LSS +   G   LS  L+T         VHG G +  HS+V  ++A
Sbjct: 4  AKLSSIEIPVGQDELSGTLLTPTGXPGVLFVHGWGGSQHHSLVRAREA 51


>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The
          Cyp199a2 System From Rhodopseudomonas Palustris
          Length = 404

 Score = 27.3 bits (59), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 66 VHGVGHANFHSIVTCKKAPSNGRVMLID 93
          + G GHA F   V+ ++A   GR+ LI+
Sbjct: 6  IAGAGHAGFQVAVSLRQAKYPGRIALIN 33


>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
           Gossypium Arboreum And Evolutionary Divergence Of Metal
           Binding Motifs For Catalysis
 pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
           Gossypium Arboreum And Evolutionary Divergence Of Metal
           Binding Motifs For Catalysis
 pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
           Gossypium Arboreum In Complex With 2-Fluorofarnesyl
           Diphosphate
 pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
           Gossypium Arboreum In Complex With 2-Fluorofarnesyl
           Diphosphate
          Length = 554

 Score = 26.9 bits (58), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 7   LNLHIHSFWRSLNCFRKDFSKPQRTGNTLFNIKRFDLARLSSSQFTKG 54
            N H+ S W+ LN   ++F KP      + N +  +LAR+    + +G
Sbjct: 487 FNKHVESAWKDLN---QEFLKPTEMPTEVLN-RSLNLARVMDVLYREG 530


>pdb|4IGJ|A Chain A, Crystal Structure Of Maleylacetoacetate Isomerase From
          Anaeromyxobacter Dehalogenans 2cp-1, Target Efi-507175
 pdb|4IGJ|B Chain B, Crystal Structure Of Maleylacetoacetate Isomerase From
          Anaeromyxobacter Dehalogenans 2cp-1, Target Efi-507175
          Length = 242

 Score = 25.8 bits (55), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 3  YQQSLNLHIHSFWRSLNCFR 22
          Y QS+ L ++S+WRS + +R
Sbjct: 19 YFQSMTLRLYSYWRSSSAWR 38


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,561,579
Number of Sequences: 62578
Number of extensions: 168674
Number of successful extensions: 448
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 5
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)