BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042233
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 86/131 (65%), Gaps = 13/131 (9%)
Query: 250 LKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQ 309
+++V F ++E LDA+C+ +KP FTE ++L+REGDP++EM+F+++G+L + T
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVT----T 63
Query: 310 SGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDA 369
G S + R LL++GDF G+EL+ WAL + ++P S RT++ALT V+A
Sbjct: 64 DGGRSGFYNR---------SLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEA 114
Query: 370 FMLMADDLKIV 380
F L+AD+LK V
Sbjct: 115 FALIADELKFV 125
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFK 306
W L+ V F+KL L + ++ + R G+P D M FVV+G + T
Sbjct: 227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 286
Query: 307 DIQSGS 312
++ G
Sbjct: 287 PVELGP 292
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFK 306
W L+ V F+KL L + ++ + R G+P D M FVV+G + T
Sbjct: 12 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 71
Query: 307 DIQSG 311
++ G
Sbjct: 72 PVELG 76
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFK 306
W L+ V F+KL L + ++ + R G+P D M FVV+G + T
Sbjct: 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 69
Query: 307 DIQSG 311
++ G
Sbjct: 70 PVELG 74
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFK 306
W L+ V F+KL L + ++ + R G+P D M FVV+G + T
Sbjct: 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 69
Query: 307 DIQSG 311
++ G
Sbjct: 70 PVELG 74
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFK 306
W L+ V F+KL L + ++ + R G+P D M FVV+G + T
Sbjct: 14 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 73
Query: 307 DIQSG 311
++ G
Sbjct: 74 PVELG 78
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFK 306
W L+ V F+KL L + ++ + R G+P D M FVV+G + T
Sbjct: 12 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 71
Query: 307 DIQSG 311
++ G
Sbjct: 72 PVELG 76
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFK 306
W L+ V F+KL L + ++ + R G+P D M FVV+G + T
Sbjct: 12 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 71
Query: 307 DIQSG 311
++ G
Sbjct: 72 PVELG 76
>pdb|2BB0|A Chain A, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2BB0|B Chain B, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2G3F|A Chain A, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
pdb|2G3F|B Chain B, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
Length = 421
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 265 DALCDC----VKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDI--QSGSTSSDHK 318
D + DC V P HTHL+ G EM +QG ++ DI Q G S K
Sbjct: 62 DEIIDCSGRLVTPGLVDPHTHLVFGGSREKEMNLKLQG----ISYLDILAQGGGILSTVK 117
Query: 319 RYDGKNTRKEDLLQDGDFYGEELIDWA 345
D + +E+LLQ F+ + ++ +
Sbjct: 118 --DTRAASEEELLQKAHFHLQRMLSYG 142
>pdb|2P9B|A Chain A, Crystal Structure Of Putative Prolidase From
Bifidobacterium Longum
Length = 458
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 264 LDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFK 306
LD V P HTHL +G P++ + +G+ TF
Sbjct: 62 LDGTGKIVXPGLINAHTHLFSQGKPLNPKLATPKGQRXVATFA 104
>pdb|1AU1|A Chain A, Human Interferon-Beta Crystal Structure
pdb|1AU1|B Chain B, Human Interferon-Beta Crystal Structure
Length = 166
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 342 IDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVF 381
+++ L+DR +FDIP+ + +Q DA + + + L+ +F
Sbjct: 28 LEYCLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIF 67
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Query: 189 KPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWN 248
K +++EE+ ++KL +L+ K+ Y Y R + D + C +
Sbjct: 13 KLKQVEEYMQYRKLPSHLRNKILDYYEY-RYRGKMFDERHIFREVSESIRQDVANYNCRD 71
Query: 249 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQG 298
L+ V F + + + ++ F ++I+EG D M F+ QG
Sbjct: 72 LVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQG 121
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 250 LKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKL 300
LK V F+ L E L L D ++ T + ++IR+G D + +GK+
Sbjct: 159 LKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKV 209
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 20/151 (13%)
Query: 189 KPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWN 248
K +++E++ F KL + +QK+ Y + R + D C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEH-RYQGKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 249 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDI 308
L+ + F + + A+ +K F ++IREG +M F+ G + T
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT---- 128
Query: 309 QSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339
KE L DG ++GE
Sbjct: 129 ---------------KGNKEMKLSDGSYFGE 144
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 20/151 (13%)
Query: 189 KPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWN 248
K +++E++ F KL + +QK+ Y + R + D C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEH-RYQGKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 249 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDI 308
L+ + F + + A+ +K F ++IREG +M F+ G + T
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT---- 128
Query: 309 QSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339
KE L DG ++GE
Sbjct: 129 ---------------KGNKEMKLSDGSYFGE 144
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 20/151 (13%)
Query: 189 KPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWN 248
K +++E++ F KL + +QK+ Y + R + D C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEH-RYQGKMFDEDSILGELNGPLREKIVNFNCRK 72
Query: 249 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDI 308
L+ + F + + A+ +K F ++IREG +M F+ G + T
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT---- 128
Query: 309 QSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339
KE L DG ++GE
Sbjct: 129 ---------------KGNKEMKLSDGSYFGE 144
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 20/151 (13%)
Query: 189 KPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWN 248
K +++E++ F KL + +QK+ Y + R + D C
Sbjct: 17 KYKQVEQYMSFHKLPADFRQKIHDYYEH-RYQGKMFDEDSILGELNGPLREEIVNFNCRK 75
Query: 249 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDI 308
L+ + F + + A+ +K F ++IREG +M F+ G + T
Sbjct: 76 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT---- 131
Query: 309 QSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339
KE L DG ++GE
Sbjct: 132 ---------------KGNKEMKLSDGSYFGE 147
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 20/151 (13%)
Query: 189 KPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWN 248
K +++E++ F KL + +QK+ Y + R + D C
Sbjct: 12 KYKQVEQYMSFHKLPADFRQKIHDYYEH-RYQGKMFDEDSILGELNGPLREEIVNFNCRK 70
Query: 249 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDI 308
L+ + F + + A+ +K F ++IREG +M F+ G + T
Sbjct: 71 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT---- 126
Query: 309 QSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339
KE L DG ++GE
Sbjct: 127 ---------------KGNKEMKLSDGSYFGE 142
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 20/151 (13%)
Query: 189 KPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWN 248
K +++E++ F KL +++QK+ Y + R + D + C
Sbjct: 17 KYKQVEQYMSFHKLPADMRQKIHDYYEH-RYQGKIFDEENILSELNDPLREEIVNFNCRK 75
Query: 249 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDI 308
L+ + F + + A+ ++ F ++IREG +M F+ G T
Sbjct: 76 LVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVIT---- 131
Query: 309 QSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339
+ KE L DG ++GE
Sbjct: 132 ---------------KSSKEMKLTDGSYFGE 147
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 296 VQGKLRTYTFKDIQSGSTSSDHKRYDGKNT----RKEDLLQDGDFYGEELIDWALRDRFS 351
++GK + F+D+ SG + HK G T RKE++ ++ D ++++W
Sbjct: 42 LEGKQKAADFEDLLSGQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEW------- 94
Query: 352 FDIPKSNRTIQALTNVDAFMLMADDLK 378
I R I+AL + +L A + K
Sbjct: 95 --IEGKERNIRALLSTMHTVLWAGETK 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,856,718
Number of Sequences: 62578
Number of extensions: 429543
Number of successful extensions: 1063
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1049
Number of HSP's gapped (non-prelim): 24
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)