Query 042233
Match_columns 392
No_of_seqs 325 out of 2593
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 2.8E-63 6.1E-68 505.0 26.7 329 5-389 199-538 (727)
2 KOG0500 Cyclic nucleotide-gate 100.0 3.7E-54 8E-59 409.4 25.7 317 12-389 108-428 (536)
3 PLN03192 Voltage-dependent pot 100.0 7.8E-53 1.7E-57 450.8 33.1 292 28-389 196-491 (823)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 1.1E-47 2.4E-52 369.3 17.4 325 15-389 334-663 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 2.1E-44 4.6E-49 347.5 17.8 290 21-387 349-644 (815)
6 cd00038 CAP_ED effector domain 99.5 1.2E-13 2.5E-18 111.0 12.4 114 255-391 1-114 (115)
7 PRK09392 ftrB transcriptional 99.5 1.9E-13 4.1E-18 125.9 13.0 119 247-389 6-124 (236)
8 PF00027 cNMP_binding: Cyclic 99.5 4.3E-13 9.2E-18 103.8 10.9 91 273-386 1-91 (91)
9 PRK11753 DNA-binding transcrip 99.5 8.2E-13 1.8E-17 119.4 13.6 111 257-389 6-116 (211)
10 smart00100 cNMP Cyclic nucleot 99.4 2.7E-12 5.7E-17 103.6 12.8 114 255-389 1-114 (120)
11 KOG0614 cGMP-dependent protein 99.4 1.1E-12 2.3E-17 127.5 8.7 124 243-388 267-391 (732)
12 PRK10402 DNA-binding transcrip 99.3 4.7E-12 1E-16 115.9 10.2 104 263-389 23-126 (226)
13 KOG1113 cAMP-dependent protein 99.3 2E-12 4.3E-17 120.4 7.5 108 247-382 121-228 (368)
14 PRK11161 fumarate/nitrate redu 99.3 1.9E-11 4.1E-16 112.4 12.3 116 250-389 15-131 (235)
15 COG0664 Crp cAMP-binding prote 99.3 2.4E-11 5.2E-16 109.2 12.3 116 251-389 3-118 (214)
16 KOG0614 cGMP-dependent protein 99.3 2.4E-12 5.1E-17 125.1 5.7 118 238-383 144-261 (732)
17 PF07885 Ion_trans_2: Ion chan 99.3 1.9E-11 4.1E-16 92.7 9.2 55 127-181 24-78 (79)
18 PLN02868 acyl-CoA thioesterase 99.3 3.3E-11 7.1E-16 120.1 12.2 115 247-387 7-121 (413)
19 COG2905 Predicted signal-trans 99.2 4.3E-11 9.3E-16 117.8 9.6 118 247-391 6-123 (610)
20 PRK09391 fixK transcriptional 99.1 4.3E-10 9.3E-15 103.2 10.1 98 266-389 33-130 (230)
21 TIGR03697 NtcA_cyano global ni 99.1 6E-10 1.3E-14 99.1 9.4 90 279-389 1-90 (193)
22 KOG1113 cAMP-dependent protein 99.0 1E-09 2.2E-14 102.5 7.7 121 242-389 234-354 (368)
23 PRK13918 CRP/FNR family transc 98.9 4.8E-09 1E-13 94.0 10.0 84 270-377 5-90 (202)
24 KOG3713 Voltage-gated K+ chann 98.5 2.3E-07 5E-12 90.7 8.2 53 128-180 378-430 (477)
25 KOG1419 Voltage-gated K+ chann 98.5 6E-07 1.3E-11 88.4 10.1 88 123-215 265-354 (654)
26 PRK10537 voltage-gated potassi 98.4 1.1E-06 2.4E-11 86.5 10.5 54 127-180 168-221 (393)
27 PF00520 Ion_trans: Ion transp 98.3 1.6E-06 3.4E-11 76.6 8.2 56 121-176 139-200 (200)
28 PF01007 IRK: Inward rectifier 98.3 6.6E-06 1.4E-10 79.2 12.0 132 3-181 5-140 (336)
29 KOG2968 Predicted esterase of 98.1 3.7E-06 8.1E-11 87.0 4.9 105 262-389 499-603 (1158)
30 KOG3684 Ca2+-activated K+ chan 98.1 5E-05 1.1E-09 73.7 12.1 91 124-218 284-374 (489)
31 KOG1418 Tandem pore domain K+ 98.0 1E-05 2.2E-10 80.6 5.6 57 127-183 115-171 (433)
32 KOG1545 Voltage-gated shaker-l 97.8 4.3E-06 9.4E-11 78.5 -0.9 46 128-173 394-439 (507)
33 KOG2968 Predicted esterase of 97.6 0.00019 4.2E-09 74.8 8.7 105 266-387 110-215 (1158)
34 KOG1420 Ca2+-activated K+ chan 97.5 0.00011 2.4E-09 72.9 4.6 59 125-183 286-344 (1103)
35 KOG3827 Inward rectifier K+ ch 97.0 0.0032 6.9E-08 60.3 8.7 55 127-181 112-168 (400)
36 PRK11832 putative DNA-binding 97.0 0.0086 1.9E-07 53.4 10.8 96 263-385 14-110 (207)
37 KOG4390 Voltage-gated A-type K 97.0 0.00018 3.9E-09 68.4 -0.1 59 125-183 354-416 (632)
38 PF04831 Popeye: Popeye protei 96.9 0.011 2.4E-07 49.5 10.2 110 258-390 14-125 (153)
39 KOG4404 Tandem pore domain K+ 96.9 0.00023 5E-09 66.3 0.2 56 127-182 80-135 (350)
40 KOG4404 Tandem pore domain K+ 96.9 0.00084 1.8E-08 62.7 3.8 57 127-183 186-250 (350)
41 KOG3542 cAMP-regulated guanine 96.5 0.0082 1.8E-07 61.1 7.4 113 246-386 279-393 (1283)
42 KOG1418 Tandem pore domain K+ 95.3 0.0024 5.2E-08 63.4 -1.9 47 127-173 242-296 (433)
43 KOG3542 cAMP-regulated guanine 94.2 0.066 1.4E-06 54.8 4.9 91 247-373 36-126 (1283)
44 KOG3193 K+ channel subunit [In 87.7 0.13 2.8E-06 51.6 -0.7 32 129-160 219-250 (1087)
45 PF08006 DUF1700: Protein of u 85.4 3.8 8.3E-05 35.8 7.5 57 187-245 4-64 (181)
46 COG4709 Predicted membrane pro 85.4 3.8 8.1E-05 35.8 7.0 73 188-262 5-81 (195)
47 PF07883 Cupin_2: Cupin domain 81.3 2 4.3E-05 30.8 3.4 31 274-304 3-34 (71)
48 PF00060 Lig_chan: Ligand-gate 78.1 3.1 6.8E-05 34.5 4.1 76 123-200 40-115 (148)
49 PF14377 DUF4414: Domain of un 71.2 9.1 0.0002 30.5 4.8 45 200-244 51-105 (108)
50 PF05899 Cupin_3: Protein of u 69.7 5.1 0.00011 29.5 2.9 31 290-339 26-56 (74)
51 PRK13290 ectC L-ectoine syntha 61.6 33 0.00072 28.0 6.5 50 272-340 38-88 (125)
52 COG0662 {ManC} Mannose-6-phosp 56.4 20 0.00044 29.3 4.4 38 269-306 36-74 (127)
53 KOG3676 Ca2+-permeable cation 55.5 1.5E+02 0.0033 31.9 11.5 71 140-211 601-682 (782)
54 COG1917 Uncharacterized conser 54.5 26 0.00056 28.6 4.9 50 271-340 45-95 (131)
55 TIGR03037 anthran_nbaC 3-hydro 52.5 40 0.00086 28.9 5.6 50 272-338 30-81 (159)
56 PF14377 DUF4414: Domain of un 50.4 47 0.001 26.4 5.5 50 201-250 8-70 (108)
57 PF07697 7TMR-HDED: 7TM-HD ext 48.9 19 0.00042 32.1 3.5 59 231-290 146-207 (222)
58 PLN03223 Polycystin cation cha 48.4 5E+02 0.011 30.3 14.7 27 228-254 1491-1517(1634)
59 PF10737 GerPC: Spore germinat 46.3 93 0.002 27.1 7.0 86 167-253 87-174 (176)
60 KOG0498 K+-channel ERG and rel 44.9 1.7E+02 0.0037 31.5 10.1 43 231-273 371-418 (727)
61 PHA02909 hypothetical protein; 42.6 57 0.0012 22.5 4.0 28 30-57 34-61 (72)
62 KOG4440 NMDA selective glutama 39.5 1.2E+02 0.0026 31.8 7.5 56 125-180 611-666 (993)
63 PF13623 SurA_N_2: SurA N-term 39.4 66 0.0014 27.1 5.0 41 158-198 9-66 (145)
64 KOG3609 Receptor-activated Ca2 39.3 2.7E+02 0.0058 30.3 10.4 22 37-58 512-533 (822)
65 smart00835 Cupin_1 Cupin. This 39.1 67 0.0015 26.7 5.1 56 270-339 31-87 (146)
66 PF13314 DUF4083: Domain of un 39.1 1.3E+02 0.0029 20.9 5.7 13 185-197 43-55 (58)
67 PF11151 DUF2929: Protein of u 38.6 21 0.00046 24.9 1.6 18 127-144 2-19 (57)
68 PF11699 CENP-C_C: Mif2/CENP-C 37.9 30 0.00065 26.3 2.4 16 291-306 35-50 (85)
69 cd07313 terB_like_2 tellurium 37.1 1.8E+02 0.0039 22.3 7.0 61 187-247 18-81 (104)
70 PF07077 DUF1345: Protein of u 37.0 78 0.0017 27.7 5.2 52 123-174 128-179 (180)
71 PRK13264 3-hydroxyanthranilate 36.3 82 0.0018 27.5 5.1 35 287-337 52-86 (177)
72 PF08285 DPM3: Dolichol-phosph 36.1 2E+02 0.0044 22.1 6.9 33 171-203 51-90 (91)
73 PF14841 FliG_M: FliG middle d 34.4 62 0.0013 24.0 3.7 40 227-274 30-69 (79)
74 PF12973 Cupin_7: ChrR Cupin-l 32.8 1.7E+02 0.0036 22.1 6.0 64 270-371 25-88 (91)
75 PF10163 EnY2: Transcription f 31.8 48 0.001 25.1 2.7 56 190-245 16-81 (86)
76 PHA01757 hypothetical protein 31.1 1.8E+02 0.004 21.7 5.4 34 150-183 3-36 (98)
77 COG3837 Uncharacterized conser 30.8 51 0.0011 28.1 2.9 34 287-340 62-95 (161)
78 PF10011 DUF2254: Predicted me 30.7 1.9E+02 0.0042 28.4 7.5 57 125-181 98-154 (371)
79 PRK12721 secretion system appa 30.0 2E+02 0.0043 28.1 7.3 64 149-212 172-239 (349)
80 COG5559 Uncharacterized conser 29.2 61 0.0013 22.6 2.5 22 199-220 8-29 (65)
81 PRK11171 hypothetical protein; 28.2 1E+02 0.0023 28.7 4.9 36 270-305 185-221 (266)
82 PRK09108 type III secretion sy 27.6 2.6E+02 0.0056 27.4 7.6 65 148-212 173-241 (353)
83 PRK08156 type III secretion sy 27.5 2.4E+02 0.0052 27.7 7.4 63 151-213 169-235 (361)
84 KOG1054 Glutamate-gated AMPA-t 27.1 91 0.002 32.4 4.4 73 128-202 596-668 (897)
85 PRK05702 flhB flagellar biosyn 27.0 2.5E+02 0.0053 27.6 7.4 62 151-212 181-246 (359)
86 PF02037 SAP: SAP domain; Int 26.9 56 0.0012 20.1 1.9 26 189-214 5-35 (35)
87 PF10047 DUF2281: Protein of u 26.3 67 0.0015 23.0 2.5 22 200-221 10-31 (66)
88 TIGR01404 FlhB_rel_III type II 26.1 2.6E+02 0.0056 27.2 7.3 62 151-212 173-238 (342)
89 TIGR00328 flhB flagellar biosy 26.0 2.6E+02 0.0057 27.2 7.3 61 152-212 175-239 (347)
90 COG2384 Predicted SAM-dependen 25.7 40 0.00086 30.5 1.5 25 3-27 87-111 (226)
91 COG3257 GlxB Uncharacterized p 24.8 2.1E+02 0.0045 25.9 5.7 56 285-374 79-136 (264)
92 TIGR00933 2a38 potassium uptak 24.7 1.6E+02 0.0035 29.1 5.8 43 126-168 230-274 (390)
93 COG1422 Predicted membrane pro 24.4 1.8E+02 0.0038 25.9 5.2 29 170-198 54-89 (201)
94 PF03579 SHP: Small hydrophobi 24.3 2.5E+02 0.0055 19.5 5.2 28 156-183 17-44 (64)
95 PRK11171 hypothetical protein; 23.7 1.1E+02 0.0024 28.5 4.2 34 272-305 64-99 (266)
96 PRK09943 DNA-binding transcrip 22.8 98 0.0021 26.9 3.5 19 288-306 127-145 (185)
97 PF08566 Pam17: Mitochondrial 22.6 3.6E+02 0.0078 23.4 6.7 28 149-176 70-97 (173)
98 cd07070 NR_LBD_SF-1 The ligand 22.5 3.1E+02 0.0067 25.0 6.8 62 203-268 15-76 (237)
99 PHA03029 hypothetical protein; 22.3 3.2E+02 0.007 20.0 5.6 33 151-183 2-34 (92)
100 COG3435 Gentisate 1,2-dioxygen 22.1 1.1E+02 0.0024 29.1 3.6 37 274-310 97-133 (351)
101 PF06305 DUF1049: Protein of u 21.5 2.9E+02 0.0062 19.3 5.2 26 158-183 19-44 (68)
102 PRK12468 flhB flagellar biosyn 21.2 4E+02 0.0086 26.5 7.6 67 149-215 179-249 (386)
103 PRK13109 flhB flagellar biosyn 21.0 3.1E+02 0.0067 26.9 6.8 61 152-212 184-248 (358)
104 COG3450 Predicted enzyme of th 20.9 1.9E+02 0.0041 23.4 4.4 29 290-337 64-92 (116)
105 TIGR00769 AAA ADP/ATP carrier 20.9 5.9E+02 0.013 26.0 9.0 34 123-163 139-173 (472)
106 PF09550 DUF2376: Conserved hy 20.7 63 0.0014 21.1 1.3 17 370-386 27-43 (43)
107 PF14134 DUF4301: Domain of un 20.2 3E+02 0.0066 28.1 6.5 102 234-346 334-439 (513)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-63 Score=505.02 Aligned_cols=329 Identities=36% Similarity=0.606 Sum_probs=286.7
Q ss_pred eeeeccCCcc--hhhhhHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccCCCCCCCcc
Q 042233 5 LLIETMGGPK--ICGFTIRSLRK----HATATWARFAFNLFVYLQAANVFGGLWYFMAIERQTECWTKACINYTGRSHCS 78 (392)
Q Consensus 5 ~~~~~~~~~~--~~~~~~~~~~~----~~~~~w~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (392)
.++++-.+|+ ++-...+++.| ++.++|++++++++++++++||.||+||++|+++.+.||
T Consensus 199 ~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~-------------- 264 (727)
T KOG0498|consen 199 GILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCP-------------- 264 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc--------------
Confidence 3455666777 33333444443 448899999899999999999999999999988887776
Q ss_pred cccCCCCccc-chhccccCCCCCCCCcccccceeccccccccCCcchHHHHHHHHHHHHHhhcccccccccCCChhhHHH
Q 042233 79 FNCHDNLEDY-TFLNEFCPMKTRNVTIHDFGIFHGALESGILEGKNFLQKILHCFIWGLQNLSNLSHNLQTSGNVEENIF 157 (392)
Q Consensus 79 ~~~~~~~~~~-sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~ 157 (392)
.. +|+...+...+..+..|+||+ .+++.+|++|+||+++||||+||||++|+|..|++|
T Consensus 265 --------~~~tw~~~l~~~~~~~~~~~~fg~------------~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iF 324 (727)
T KOG0498|consen 265 --------RKATWLGSLGRLLSCYNLSFTFGI------------YSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIF 324 (727)
T ss_pred --------cccccccccccccccCcccccccc------------hhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHH
Confidence 23 788764311112333466755 567779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcchhHHHhhcccccCcHHHHHHHHHHHHHHHhhcCCCcHHHHHhhC
Q 042233 158 VILVVSSGFLLFALLIGNMQRYLKLG----KEMTLKPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQNLLNNL 233 (392)
Q Consensus 158 ~i~~~i~g~~~~a~iig~i~~il~~~----~~~~~~~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~~~~il~~L 233 (392)
+|++|++|.++||++||||+++++.. ++|+.++.++++||++++||++||+||++|++|+|+..+++|++++|+.|
T Consensus 325 si~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~L 404 (727)
T KOG0498|consen 325 SIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSL 404 (727)
T ss_pred HHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhC
Confidence 99999999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcc
Q 042233 234 PNELRRELKRELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGST 313 (392)
Q Consensus 234 p~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~ 313 (392)
|+.||++|..+++.++++++|+|+++|++++.+|+.++++.+|+|||+|++|||+.++||||.+|.+++...+++.
T Consensus 405 P~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~---- 480 (727)
T KOG0498|consen 405 PKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGG---- 480 (727)
T ss_pred CHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred cCCcccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 314 SSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 314 ~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
+.++..|++||+|||.-+.++++ .| +++||+|++.|+++.|++++|.+++++||++-.
T Consensus 481 -----------~~~~~~L~~Gd~~GeEl~~~~~~------~p-~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~ 538 (727)
T KOG0498|consen 481 -----------FFVVAILGPGDFFGEELLTWCLD------LP-QTRTVRALTYCELFRLSADDLKEVLQQFRRLGS 538 (727)
T ss_pred -----------eEEEEEecCCCccchHHHHHHhc------CC-CCceeehhhhhhHHhccHHHHHHHHHHhHHHHH
Confidence 35677999999999555555542 22 378999999999999999999999999997643
No 2
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-54 Score=409.37 Aligned_cols=317 Identities=21% Similarity=0.291 Sum_probs=268.8
Q ss_pred CcchhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccCCCCCCCcccccCCCCcccchh
Q 042233 12 GPKICGFTIRSLRKHATATWARFAFNLFVYLQAANVFGGLWYFMAIERQTECWTKACINYTGRSHCSFNCHDNLEDYTFL 91 (392)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sWi 91 (392)
.+++.+|+.|..++-+.-.-.+....+..+++++||.||+||+++.... -..++|.
T Consensus 108 ~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g------------------------~~~d~wv 163 (536)
T KOG0500|consen 108 IYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIG------------------------FTTDDWV 163 (536)
T ss_pred HHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcC------------------------ccccccc
Confidence 4555666666555444333333444556678899999999999993211 2355687
Q ss_pred ccccCCCCCCCCcccccceeccccccccCCcchHHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHH
Q 042233 92 NEFCPMKTRNVTIHDFGIFHGALESGILEGKNFLQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFAL 171 (392)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~ 171 (392)
...-. +|. |+ ++ ...++..+|+.|+||+..||||+|- -.+|.++.|.+|.|+-.++|+.+||.
T Consensus 164 Y~~i~--d~~-----~~--------~c-~~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAt 226 (536)
T KOG0500|consen 164 YPKIN--DPE-----FA--------TC-DAGNLTREYLYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFAT 226 (536)
T ss_pred cCCcc--Ccc-----cc--------cc-chhHHHHHHHHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhh
Confidence 75211 011 10 00 1245789999999999999999985 45789999999999999999999999
Q ss_pred HHHHHHHHHHHH----HHHhcchhHHHhhcccccCcHHHHHHHHHHHHHHHhhcCCCcHHHHHhhCcHHHHHHHHHHHHH
Q 042233 172 LIGNMQRYLKLG----KEMTLKPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQNLLNNLPNELRRELKRELCW 247 (392)
Q Consensus 172 iig~i~~il~~~----~~~~~~~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~ 247 (392)
++|+++++++++ .+||++|+.+++||+.|++|+.+|.||.+||.|.|.+++..||+++++.||+.|+.+|+.+++.
T Consensus 227 IvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~ 306 (536)
T KOG0500|consen 227 IVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHL 306 (536)
T ss_pred hhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHH
Confidence 999999999999 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccc
Q 042233 248 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRK 327 (392)
Q Consensus 248 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (392)
+.|+++++|+++.+.++.+++.++++++|.|||+|+++||.+.+||+|.+|.++|...+++ ++
T Consensus 307 dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~-----------------t~ 369 (536)
T KOG0500|consen 307 DTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGV-----------------TV 369 (536)
T ss_pred HHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCc-----------------EE
Confidence 9999999999999999999999999999999999999999999999999999999997754 35
Q ss_pred cccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 328 EDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 328 i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
...+++|++|||++++. +.. ..+..+|+++|++++++++++|+|+|+.+++++||+-.+
T Consensus 370 ~~~L~~G~~FGEisIln-i~g--~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~ 428 (536)
T KOG0500|consen 370 FVTLKAGSVFGEISILN-IKG--NKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARK 428 (536)
T ss_pred EEEecCCceeeeeEEEE-EcC--cccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHH
Confidence 66899999999999853 332 235678999999999999999999999999999998643
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=7.8e-53 Score=450.82 Aligned_cols=292 Identities=19% Similarity=0.274 Sum_probs=261.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccCCCCCCCcccccCCCCcccchhccccCCCCCCCCcccc
Q 042233 28 TATWARFAFNLFVYLQAANVFGGLWYFMAIERQTECWTKACINYTGRSHCSFNCHDNLEDYTFLNEFCPMKTRNVTIHDF 107 (392)
Q Consensus 28 ~~~w~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~ 107 (392)
...|.+.++.++++++++||+||+||++|-... ..+.+|+..... +
T Consensus 196 ~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~------------------------~~~~~Wi~~~~~---------~- 241 (823)
T PLN03192 196 SYFWIRCARLLSVTLFLVHCAGCLYYLIADRYP------------------------HQGKTWIGAVIP---------N- 241 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------------------------CCCCchHHHhhh---------c-
Confidence 456888888888889999999999999992111 235689986321 0
Q ss_pred cceeccccccccCCcchHHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 042233 108 GIFHGALESGILEGKNFLQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG---- 183 (392)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~---- 183 (392)
..+.+++.+|+.|+|||++|||||||||++|.|..|++|++++|++|+++|||++|+|++++.+.
T Consensus 242 -----------~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~ 310 (823)
T PLN03192 242 -----------FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRT 310 (823)
T ss_pred -----------cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHhcchhHHHhhcccccCcHHHHHHHHHHHHHHHhhcCCCcHHHHHhhCcHHHHHHHHHHHHHHHhhcccccccCcHHH
Q 042233 184 KEMTLKPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQNLLNNLPNELRRELKRELCWNLLKKVQGFRKLNEVT 263 (392)
Q Consensus 184 ~~~~~~~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~ 263 (392)
++|+++++.+++||+++++|+.||.||++|+++.|+.+ ..+++++++.||++||.++..+++.+.++++++|+++|+++
T Consensus 311 ~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~ 389 (823)
T PLN03192 311 MEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAE-SLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREI 389 (823)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHH
Confidence 68999999999999999999999999999999999764 57889999999999999999999999999999999999999
Q ss_pred HHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhh
Q 042233 264 LDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELID 343 (392)
Q Consensus 264 l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll 343 (392)
+.+|+..++++.|+|||.|+.+||.++++|||.+|.|++...++ +++.++..+++|++|||.+++
T Consensus 390 l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~---------------~~e~~l~~l~~Gd~FGE~~~l 454 (823)
T PLN03192 390 LLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEG---------------EKERVVGTLGCGDIFGEVGAL 454 (823)
T ss_pred HHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecC---------------CcceeeEEccCCCEecchHHh
Confidence 99999999999999999999999999999999999999986432 235678899999999999885
Q ss_pred hhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 344 WALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 344 ~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
. ..+++++++|.+.|+++.|++++|.++++++|++..
T Consensus 455 ~---------~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~ 491 (823)
T PLN03192 455 C---------CRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNV 491 (823)
T ss_pred c---------CCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHH
Confidence 3 234678999999999999999999999999998653
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-47 Score=369.28 Aligned_cols=325 Identities=19% Similarity=0.283 Sum_probs=288.6
Q ss_pred hhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHhccCCCCCCCcccccCCCCcccchhcc
Q 042233 15 ICGFTIRSLRKHATATWARFAFNLFVYLQAANVFGGLWYFMA-IERQTECWTKACINYTGRSHCSFNCHDNLEDYTFLNE 93 (392)
Q Consensus 15 ~~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~H~~aC~w~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sWi~~ 93 (392)
+.|+|+|+|+++.+++-+..+++++++.++|||+||+||.|| .|-.++ -.+.-..++|+-+
T Consensus 334 RLGRVaRKLD~YlEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~------------------~~n~i~~dsWL~k 395 (971)
T KOG0501|consen 334 RLGRVARKLDHYLEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDE------------------MDNTIQPDSWLWK 395 (971)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhheeccchheecc------------------cccccccchHHHH
Confidence 579999999999999999888888999999999999999999 443211 1233467799998
Q ss_pred ccCCCCCCCCcccccceeccccccccCCcchHHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHH
Q 042233 94 FCPMKTRNVTIHDFGIFHGALESGILEGKNFLQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLI 173 (392)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~ii 173 (392)
... +...+|+|.-=.... .+..+|--..|+.|+||.++.|||||+|+|.|.|+.|++|++.+|++|+.+||-++
T Consensus 396 La~---~~~tpY~~~~s~~~~---~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIF 469 (971)
T KOG0501|consen 396 LAN---DIGTPYNYNLSNKGT---LVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIF 469 (971)
T ss_pred HHh---hcCCCceeccCCCce---eecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 764 456777774111111 13567778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----HHHhcchhHHHhhcccccCcHHHHHHHHHHHHHHHhhcCCCcHHHHHhhCcHHHHHHHHHHHHHHH
Q 042233 174 GNMQRYLKLG----KEMTLKPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQNLLNNLPNELRRELKRELCWNL 249 (392)
Q Consensus 174 g~i~~il~~~----~~~~~~~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~ 249 (392)
|+++.|++++ ..|.+.++.+.+||+-..+|+.|.+||..|.--.|...+++|.+++|.--|..+|.+|..+++++.
T Consensus 470 G~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKV 549 (971)
T KOG0501|consen 470 GHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKV 549 (971)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhh
Confidence 9999999999 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccc
Q 042233 250 LKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKED 329 (392)
Q Consensus 250 l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 329 (392)
++..|-|+-.|+.+++.|+..++.....|||.|+..||..|.+.||++|.++|...+ .+++
T Consensus 550 FnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDD-------------------EVVA 610 (971)
T KOG0501|consen 550 FNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDD-------------------EVVA 610 (971)
T ss_pred hccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecC-------------------cEEE
Confidence 999999999999999999999999999999999999999999999999999999865 5788
Q ss_pred cccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 330 LLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 330 ~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
.|++||+||+.-.-. .....+.++|+|+++|++..|.|+.+.++++-|..+-+
T Consensus 611 ILGKGDVFGD~FWK~-------~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFan 663 (971)
T KOG0501|consen 611 ILGKGDVFGDEFWKE-------NTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFAN 663 (971)
T ss_pred EeecCccchhHHhhh-------hhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHH
Confidence 999999999985421 13445778999999999999999999999998877654
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-44 Score=347.48 Aligned_cols=290 Identities=17% Similarity=0.257 Sum_probs=258.7
Q ss_pred HhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHhccCCCCCCCcccccCCCCcccchhccccCCC
Q 042233 21 RSLRKHATAT-WARFAFNLFVYLQAANVFGGLWYFMA-IERQTECWTKACINYTGRSHCSFNCHDNLEDYTFLNEFCPMK 98 (392)
Q Consensus 21 ~~~~~~~~~~-w~~~~~~l~~~~l~~H~~aC~w~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sWi~~~~~~~ 98 (392)
+.|+.+...+ -++.++.+-.++.+.|+.||+||..+ +|.- ..+-|+....
T Consensus 349 ~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~Sayqgl-------------------------G~~rWVydg~--- 400 (815)
T KOG0499|consen 349 HHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGL-------------------------GTTRWVYDGE--- 400 (815)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhccc-------------------------ccceeEEcCC---
Confidence 3444444443 34566677777889999999999998 4322 2456876522
Q ss_pred CCCCCcccccceeccccccccCCcchHHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 99 TRNVTIHDFGIFHGALESGILEGKNFLQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQR 178 (392)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~ 178 (392)
...|++|+|||+-|++|+| |.-.|.|..|.+|..+.-+.|+++||.+||.|-.
T Consensus 401 --------------------------Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRD 453 (815)
T KOG0499|consen 401 --------------------------GNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRD 453 (815)
T ss_pred --------------------------CCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2359999999999999999 5778999999999999999999999999999999
Q ss_pred HHHHH----HHHhcchhHHHhhcccccCcHHHHHHHHHHHHHHHhhcCCCcHHHHHhhCcHHHHHHHHHHHHHHHhhccc
Q 042233 179 YLKLG----KEMTLKPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQNLLNNLPNELRRELKRELCWNLLKKVQ 254 (392)
Q Consensus 179 il~~~----~~~~~~~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~ 254 (392)
++... ..|+..|+..-.||++.+||++.|.||+.+|+|.|++++.+||.++++.||..||.+++.+++...|.++.
T Consensus 454 vi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVq 533 (815)
T KOG0499|consen 454 VIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQ 533 (815)
T ss_pred HHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHH
Confidence 99988 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCC
Q 042233 255 GFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDG 334 (392)
Q Consensus 255 ~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G 334 (392)
+|++++.+.+..++.+++.+.|.|||.|++.||.+.+||+|..|+|+|....++ ++++.+|++|
T Consensus 534 LFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~----------------~~Vl~tL~~G 597 (815)
T KOG0499|consen 534 LFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDG----------------TKVLVTLKAG 597 (815)
T ss_pred HhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCC----------------CEEEEEeccc
Confidence 999999999999999999999999999999999999999999999999976543 3688899999
Q ss_pred CeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHh
Q 042233 335 DFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQ 387 (392)
Q Consensus 335 ~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~ 387 (392)
++|||++++. +....+|+++|+|.++|.+++|+++|+.+++.+||+-
T Consensus 598 sVFGEISLLa------igG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~s 644 (815)
T KOG0499|consen 598 SVFGEISLLA------IGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDS 644 (815)
T ss_pred ceeeeeeeee------ecCCCccchhhhhcccceeeEecHhHHHHHHHhCccH
Confidence 9999999964 3445679999999999999999999999999999974
No 6
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.53 E-value=1.2e-13 Score=111.00 Aligned_cols=114 Identities=23% Similarity=0.410 Sum_probs=99.3
Q ss_pred ccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCC
Q 042233 255 GFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDG 334 (392)
Q Consensus 255 ~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G 334 (392)
+|+.++++.+..++..++.+.+.+|++|+.+|++.+.+|||.+|.+.+...+. ++++..+..+.+|
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~--------------~g~~~~~~~~~~g 66 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDE--------------DGREQIVGFLGPG 66 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECC--------------CCcEEEEEecCCc
Confidence 47889999999999999999999999999999999999999999999987652 2245677889999
Q ss_pred CeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhccC
Q 042233 335 DFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLGLY 391 (392)
Q Consensus 335 ~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~ 391 (392)
++||+..++. ..++..+++|.+.|+++.|++++|.++++++|++...+
T Consensus 67 ~~~g~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 67 DLFGELALLG---------NGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred cCcChHHHhc---------CCCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 9999997731 23456789999999999999999999999999987653
No 7
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.51 E-value=1.9e-13 Score=125.85 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=105.2
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
.+.++.+|+|+.++++.+..+....+.+.|.+|++|+++||.++.+|+|.+|.|+++...++ ++.
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~---------------~~~ 70 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQD---------------RET 70 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCC---------------ceE
Confidence 35788999999999999999999999999999999999999999999999999999875322 245
Q ss_pred ccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 327 KEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 327 ~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
.+..+.+|++||+.+++. ..++.++++|.++|+++.|++++|.+++.++|.+..
T Consensus 71 ~i~~~~~g~~~g~~~~~~---------~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 124 (236)
T PRK09392 71 TLAILRPVSTFILAAVVL---------DAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMR 124 (236)
T ss_pred EEEEeCCCchhhhHHHhC---------CCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHH
Confidence 778999999999998742 234678999999999999999999999999998764
No 8
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.48 E-value=4.3e-13 Score=103.82 Aligned_cols=91 Identities=19% Similarity=0.317 Sum_probs=78.9
Q ss_pred eeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCC
Q 042233 273 PTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSF 352 (392)
Q Consensus 273 ~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~ 352 (392)
++.|++|++|+++|+..+.+|||++|.+.+...+... +...+..+.+|++||+.+++..
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~--------------~~~~~~~~~~g~~~g~~~~~~~------- 59 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDG--------------KEQIIFFLGPGDIFGEIELLTG------- 59 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTS--------------EEEEEEEEETTEEESGHHHHHT-------
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecc--------------eeeeecceeeeccccceeecCC-------
Confidence 3679999999999999999999999999999876432 3346789999999999988641
Q ss_pred CCCCcceeEEEcceEEEEEecHHHHHHHHHHcHH
Q 042233 353 DIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMN 386 (392)
Q Consensus 353 ~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~ 386 (392)
.++..+++|.++|+++.|++++|.++++++|+
T Consensus 60 --~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 60 --KPSPFTVIALTDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp --SBBSSEEEESSSEEEEEEEHHHHHHHHHHSHH
T ss_pred --CccEEEEEEccCEEEEEEeHHHHHHHHHhCcC
Confidence 24678999999999999999999999999996
No 9
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.46 E-value=8.2e-13 Score=119.36 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=96.6
Q ss_pred ccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCe
Q 042233 257 RKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDF 336 (392)
Q Consensus 257 ~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~ 336 (392)
+.+|++.++.++..++.+.|.+|++|+.+|++++.+|||.+|.|+++..+. ++++..+..+.+|++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~--------------~g~~~~~~~~~~g~~ 71 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDE--------------EGKEMILSYLNQGDF 71 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECC--------------CCCEEEEEEcCCCCE
Confidence 468999999999999999999999999999999999999999999997542 234567889999999
Q ss_pred echhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 337 YGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 337 FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
||+.+++. +.+++..+++|.++|+++.|++++|.++++++|++..
T Consensus 72 ~g~~~~~~--------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 116 (211)
T PRK11753 72 IGELGLFE--------EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM 116 (211)
T ss_pred Eeehhhcc--------CCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHH
Confidence 99997732 1234667899999999999999999999999999864
No 10
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.43 E-value=2.7e-12 Score=103.59 Aligned_cols=114 Identities=22% Similarity=0.341 Sum_probs=97.9
Q ss_pred ccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCC
Q 042233 255 GFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDG 334 (392)
Q Consensus 255 ~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G 334 (392)
+|.+++++.++.++..++.+.+.+|++|+++|++.+.+|||.+|.+.+...+. ++++..+..+.+|
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~--------------~g~~~~~~~~~~g 66 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLE--------------DGREQILGILGPG 66 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECC--------------CCceEEEEeecCC
Confidence 47889999999999999999999999999999999999999999999997642 2345678899999
Q ss_pred CeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 335 DFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 335 ~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
++||+.+++. . ...++..++.|.+.|.++.++.+++.+.+..+|.++.
T Consensus 67 ~~~g~~~~~~---~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 114 (120)
T smart00100 67 DFFGELALLT---N----SRRAASATAVALELATLLRIDFRDFLQLLQENPQLLL 114 (120)
T ss_pred ceechhhhcc---C----CCcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHH
Confidence 9999998741 0 1223567899999999999999999999999998764
No 11
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.38 E-value=1.1e-12 Score=127.49 Aligned_cols=124 Identities=20% Similarity=0.337 Sum_probs=108.8
Q ss_pred HHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccC
Q 042233 243 RELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDG 322 (392)
Q Consensus 243 ~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~ 322 (392)
.+-+.++|+++|+|+++|++.+.+++..++..+|..|++|+++|+.++.+|+|.+|.|.+...+.+.
T Consensus 267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~------------- 333 (732)
T KOG0614|consen 267 HEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGS------------- 333 (732)
T ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCC-------------
Confidence 3457899999999999999999999999999999999999999999999999999999999866432
Q ss_pred ccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcce-EEEEEecHHHHHHHHHHcHHhh
Q 042233 323 KNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTN-VDAFMLMADDLKIVFNDMMNQL 388 (392)
Q Consensus 323 ~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~-~~l~~L~~~~f~~ll~~~P~~~ 388 (392)
..+..++.+.+||+|||.+|+. -..|++++.|... ++++.|+|+.|..++-..-++-
T Consensus 334 ~q~~~lr~l~kGd~FGE~al~~---------edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ 391 (732)
T KOG0614|consen 334 TQPQELRTLNKGDYFGERALLG---------EDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELK 391 (732)
T ss_pred CchhHHhhccccchhhHHHhhc---------cCccchhhhccCCCceEEEecHHHHHHhcccHHHhh
Confidence 3567889999999999998842 2458899999987 9999999999999887666554
No 12
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.34 E-value=4.7e-12 Score=115.90 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=89.2
Q ss_pred HHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhh
Q 042233 263 TLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELI 342 (392)
Q Consensus 263 ~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~l 342 (392)
|..+|....+.+.|++|++|+.+||+++.+|||.+|.|+++..+. ++++.++..+.+|++||+.++
T Consensus 23 ~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~--------------~G~e~~~~~~~~g~~~G~~~~ 88 (226)
T PRK10402 23 FSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLA--------------NGKVSLIDFFAAPCFIGEIEL 88 (226)
T ss_pred CCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECC--------------CCCEeeeeecCCCCeEEeehh
Confidence 344677889999999999999999999999999999999997642 244678889999999999976
Q ss_pred hhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 343 DWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 343 l~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
+ +..+++++++|.++|+++.+++++|.+++.++|.+..
T Consensus 89 ~---------~~~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~ 126 (226)
T PRK10402 89 I---------DKDHETKAVQAIEECWCLALPMKDCRPLLLNDALFLR 126 (226)
T ss_pred h---------cCCCCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHH
Confidence 3 1234678999999999999999999999999998764
No 13
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=2e-12 Score=120.38 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=97.6
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
.+.+++.-+|++++++.+.++...|.++.+..|+.|+++|+.++.+|+|.+|+++|+..+ .
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~-------------------~ 181 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNG-------------------T 181 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECC-------------------e
Confidence 567788889999999999999999999999999999999999999999999999999853 3
Q ss_pred ccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHH
Q 042233 327 KEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFN 382 (392)
Q Consensus 327 ~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~ 382 (392)
.+..+.+|..|||.++++ .++|.+|+.|.+++.+|.|+|..|..++-
T Consensus 182 ~v~~~~~g~sFGElALmy---------n~PRaATv~a~t~~klWgldr~SFrrIi~ 228 (368)
T KOG1113|consen 182 YVTTYSPGGSFGELALMY---------NPPRAATVVAKSLKKLWGLDRTSFRRIIM 228 (368)
T ss_pred EEeeeCCCCchhhhHhhh---------CCCcccceeeccccceEEEeeceeEEEee
Confidence 466899999999999965 45689999999999999999999976653
No 14
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.31 E-value=1.9e-11 Score=112.44 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=95.8
Q ss_pred hhcccccccCcHHHHHHHhhhcce-eeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccccc
Q 042233 250 LKKVQGFRKLNEVTLDALCDCVKP-TFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKE 328 (392)
Q Consensus 250 l~~i~~F~~~s~~~l~~l~~~l~~-~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i 328 (392)
+++.+.|..++++.++.|....+. +.|.+|++|+.+||+++.+|+|.+|.|+++..+. ++++.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~--------------~G~e~i~ 80 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITE--------------QGDEQIT 80 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECC--------------CCCEEEE
Confidence 445555557999999999988864 6799999999999999999999999999997652 2345678
Q ss_pred ccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 329 DLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 329 ~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
..+.+|++||+.+++ . .....+++|.++|+++.|++++|.+++.++|++..
T Consensus 81 ~~~~~gd~~g~~~~~---------~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~ 131 (235)
T PRK11161 81 GFHLAGDLVGFDAIG---------S-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQ 131 (235)
T ss_pred EeccCCceecccccc---------C-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHH
Confidence 889999999987542 1 12335799999999999999999999999998754
No 15
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.30 E-value=2.4e-11 Score=109.17 Aligned_cols=116 Identities=18% Similarity=0.213 Sum_probs=98.0
Q ss_pred hcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccccccc
Q 042233 251 KKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDL 330 (392)
Q Consensus 251 ~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 330 (392)
...+.|...++.....+....+.+.+++|++|+.+||+++.+|+|.+|.|.++.... ++++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~--------------~G~~~~~~~ 68 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTE--------------DGREIILGF 68 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECC--------------CCcEEEEEE
Confidence 445667767777777888899999999999999999999999999999999998652 234577889
Q ss_pred ccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 331 LQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 331 l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
+.+|++||+.+++. ..++.++++|.++|+++.+++++|.+++.+.|.+..
T Consensus 69 ~~~g~~fg~~~l~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~ 118 (214)
T COG0664 69 LGPGDFFGELALLG---------GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLAL 118 (214)
T ss_pred ecCCchhhhHHHhc---------CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHH
Confidence 99999999998842 124778999999999999999999999888776643
No 16
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.30 E-value=2.4e-12 Score=125.09 Aligned_cols=118 Identities=19% Similarity=0.352 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCc
Q 042233 238 RRELKRELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDH 317 (392)
Q Consensus 238 r~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~ 317 (392)
|..=..++.++.+.+..|++++++..+++++..|.+..|.+|..|+++||+++.+|.+.+|+++|....
T Consensus 144 Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g----------- 212 (732)
T KOG0614|consen 144 KDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREG----------- 212 (732)
T ss_pred CCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCC-----------
Confidence 334456677889999999999999999999999999999999999999999999999999999999853
Q ss_pred ccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHH
Q 042233 318 KRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFND 383 (392)
Q Consensus 318 ~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~ 383 (392)
..++.+++|..|||.+++++ -+|+++|+|+++|.+|.|+|+-|+.++..
T Consensus 213 --------~ll~~m~~gtvFGELAILyn---------ctRtAsV~alt~~~lWaidR~vFq~IM~~ 261 (732)
T KOG0614|consen 213 --------KLLGKMGAGTVFGELAILYN---------CTRTASVRALTDVRLWAIDREVFQAIMMR 261 (732)
T ss_pred --------eeeeccCCchhhhHHHHHhC---------CcchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 46779999999999999763 34899999999999999999999988753
No 17
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.29 E-value=1.9e-11 Score=92.75 Aligned_cols=55 Identities=16% Similarity=0.352 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLK 181 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~ 181 (392)
.|..|+||+++|+||+||||+.|.+...++++++.+++|..++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4889999999999999999999999999999999999999999999999998875
No 18
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.27 E-value=3.3e-11 Score=120.10 Aligned_cols=115 Identities=18% Similarity=0.330 Sum_probs=98.4
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
.+.++++++|++++++.+.+++..++.+.|.+|++|+++||..+.+|+|.+|.|+++..+.+ + +.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~--------------g-e~ 71 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEE--------------E-SR 71 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCC--------------C-cE
Confidence 35688999999999999999999999999999999999999999999999999999876431 1 35
Q ss_pred ccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHh
Q 042233 327 KEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQ 387 (392)
Q Consensus 327 ~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~ 387 (392)
++..+++|++||+. + . ..++.++++|.++|+++.|+++.|..+....+..
T Consensus 72 ~l~~l~~Gd~fG~~-l----~------~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~ 121 (413)
T PLN02868 72 PEFLLKRYDYFGYG-L----S------GSVHSADVVAVSELTCLVLPHEHCHLLSPKSIWD 121 (413)
T ss_pred EEEEeCCCCEeehh-h----C------CCCcccEEEECCCEEEEEEcHHHHhhhccccccc
Confidence 67789999999975 3 1 2346789999999999999999999887665543
No 19
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.22 E-value=4.3e-11 Score=117.80 Aligned_cols=118 Identities=16% Similarity=0.264 Sum_probs=103.7
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
.+++.++|.|+.++++.+.+|...++..+|.+||+|+..|.+.+.+|+|.+|.|++...++ .
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g------------------~ 67 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGG------------------E 67 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCC------------------e
Confidence 4688999999999999999999999999999999999999999999999999999998654 3
Q ss_pred ccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhccC
Q 042233 327 KEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLGLY 391 (392)
Q Consensus 327 ~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~ 391 (392)
++..+..|+.||..+++..+ ++ ...+.|.+++-+|.|+++.|.++.+++|++-..|
T Consensus 68 v~~~~~~gdlFg~~~l~~~~--------~~-~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff 123 (610)
T COG2905 68 VLDRLAAGDLFGFSSLFTEL--------NK-QRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFF 123 (610)
T ss_pred eeeeeccCccccchhhcccC--------CC-cceeEeeccceEEecCHHHHHHHHHhCcHHHHHH
Confidence 67799999999999985421 11 2357788899999999999999999999986544
No 20
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.10 E-value=4.3e-10 Score=103.23 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=83.0
Q ss_pred HHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhh
Q 042233 266 ALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWA 345 (392)
Q Consensus 266 ~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~ 345 (392)
.+....+.+.|++|++|+.+||.++.+|||.+|.|.++..+. ++++.++..+.+|++||+..
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~--------------~G~e~i~~~~~~Gd~fG~~~---- 94 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLS--------------DGRRQIGAFHLPGDVFGLES---- 94 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECC--------------CCcEEEEEEecCCceecccC----
Confidence 455667889999999999999999999999999999997542 23456788899999999641
Q ss_pred hccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 346 LRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 346 l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
..++..+++|.++|+++.|++++|.+++.++|++..
T Consensus 95 --------~~~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~ 130 (230)
T PRK09391 95 --------GSTHRFTAEAIVDTTVRLIKRRSLEQAAATDVDVAR 130 (230)
T ss_pred --------CCcCCeEEEEcCceEEEEEEHHHHHHHHhhChHHHH
Confidence 123468999999999999999999999999999865
No 21
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.07 E-value=6e-10 Score=99.08 Aligned_cols=90 Identities=12% Similarity=0.184 Sum_probs=74.9
Q ss_pred CCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcc
Q 042233 279 HTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSN 358 (392)
Q Consensus 279 ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~ 358 (392)
|+.|+.+||+.+.+|+|.+|.|+++..+. ++++.++..+.+|++||+.+++. .. ..++.
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~--------------~G~e~~l~~~~~g~~~G~~~~~~---~~----~~~~~ 59 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYE--------------SGEEITVALLRENSVFGVLSLIT---GH----RSDRF 59 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCC--------------CCcEeeeEEccCCCEeeeeeecc---CC----CCccc
Confidence 78999999999999999999999997542 34467788999999999987742 11 11244
Q ss_pred eeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 359 RTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 359 ~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
.++.|.++|+++.+++++|.++++++|++..
T Consensus 60 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~l~~ 90 (193)
T TIGR03697 60 YHAVAFTRVELLAVPIEQVEKAIEEDPDLSM 90 (193)
T ss_pred eEEEEecceEEEEeeHHHHHHHHHHChHHHH
Confidence 6799999999999999999999999998864
No 22
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=1e-09 Score=102.54 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=105.6
Q ss_pred HHHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCccccc
Q 042233 242 KRELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYD 321 (392)
Q Consensus 242 ~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~ 321 (392)
..-+|.+.|+++|+++.+.......++..+.++.|.+|+.|+.+|++++.+|+|.+|.|.+....++
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~------------- 300 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG------------- 300 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC-------------
Confidence 4567889999999999999999999999999999999999999999999999999999998764321
Q ss_pred CccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 322 GKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 322 ~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
..+ .+++|++|||.+++.. .+|.++|.|.+...|..+++..|+.++.-..+++.
T Consensus 301 ----v~v-kl~~~dyfge~al~~~---------~pr~Atv~a~~~~kc~~~dk~~ferllgpc~dilk 354 (368)
T KOG1113|consen 301 ----VEV-KLKKGDYFGELALLKN---------LPRAATVVAKGRLKCAKLDKPRFERLLGPCQDILK 354 (368)
T ss_pred ----eEE-EechhhhcchHHHHhh---------chhhceeeccCCceeeeeChHHHHHHhhHHHHHHH
Confidence 234 8999999999998642 34789999999999999999999999887666553
No 23
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.94 E-value=4.8e-09 Score=94.04 Aligned_cols=84 Identities=20% Similarity=0.286 Sum_probs=70.1
Q ss_pred hcceeeeCCCCEEEecCC--CCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhc
Q 042233 270 CVKPTFFTEHTHLIREGD--PIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALR 347 (392)
Q Consensus 270 ~l~~~~~~~ge~I~~~gd--~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~ 347 (392)
.++.+.|++|++|+.+|| +++.+|+|.+|.|+++..+ +++++.++..+.+|++||+.+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~--------------~~G~e~~l~~~~~Gd~~G~~~~~---- 66 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVD--------------DEGNALTLRYVRPGEYFGEEALA---- 66 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEEC--------------CCCCEEEEEEecCCCeechHHhc----
Confidence 467788999999999999 7799999999999999864 23456788899999999997542
Q ss_pred cCCCCCCCCcceeEEEcceEEEEEecHHHH
Q 042233 348 DRFSFDIPKSNRTIQALTNVDAFMLMADDL 377 (392)
Q Consensus 348 ~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f 377 (392)
. .+++.++.|.++|+++.|++++|
T Consensus 67 -----~-~~~~~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 67 -----G-AERAYFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred -----C-CCCCceEEEcCceEEEEEEHHHc
Confidence 1 23567899999999999998776
No 24
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.54 E-value=2.3e-07 Score=90.74 Aligned_cols=53 Identities=19% Similarity=0.284 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYL 180 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il 180 (392)
-=.|++||+.|||||||||++|.|..-++.+....++|+++.|.-|..|.+=+
T Consensus 378 IPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF 430 (477)
T KOG3713|consen 378 IPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNF 430 (477)
T ss_pred ccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhH
Confidence 34689999999999999999999999999999999999999998766554433
No 25
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.50 E-value=6e-07 Score=88.41 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcchhHHHhhcccc
Q 042233 123 NFLQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG--KEMTLKPREIEEWQPFQ 200 (392)
Q Consensus 123 s~~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~--~~~~~~~~~l~~~m~~~ 200 (392)
+-+.-|-.|++|.+.|+|||||||.+|+|..-++.+.++.++|..+||.--|.+++=+.-. ++.++ ++|-+++
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQ-----KHf~rrr 339 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQ-----KHFNRRR 339 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHH-----HHHHhhc
Confidence 3467899999999999999999999999999999999999999999999888887766555 33333 3777788
Q ss_pred cCcHHHHHHHHHHHH
Q 042233 201 KLSKNLQQKVKKYKS 215 (392)
Q Consensus 201 ~lp~~L~~ri~~y~~ 215 (392)
+.-.+|.+-.-+||-
T Consensus 340 ~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 340 NPAASLIQCAWRYYA 354 (654)
T ss_pred chHHHHHHHHHHHHh
Confidence 888888877777764
No 26
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.45 E-value=1.1e-06 Score=86.46 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYL 180 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il 180 (392)
.+..|+||++.|+||+||||+.|.+...++++++++++|..+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999998876633
No 27
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.35 E-value=1.6e-06 Score=76.58 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=47.3
Q ss_pred CcchHHHHHHHHHHHHHhhcccccccccCC-----ChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 042233 121 GKNFLQKILHCFIWGLQNLSNLSHNLQTSG-----NVEENIFV-ILVVSSGFLLFALLIGNM 176 (392)
Q Consensus 121 ~~s~~~~Yi~s~Ywa~~t~ttvGyGdi~p~-----~~~E~~~~-i~~~i~g~~~~a~iig~i 176 (392)
+.+..+.|..|+||++.++|+.|+||+.|. +..+.++. ++..+.+.++++.++|.|
T Consensus 139 ~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 139 GYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp THHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 445577899999999999999999999887 88999998 666666668888888765
No 28
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.31 E-value=6.6e-06 Score=79.15 Aligned_cols=132 Identities=16% Similarity=0.252 Sum_probs=81.9
Q ss_pred cceeeeccCCc-chhhhhHHhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHhccCCCCCCCcccc
Q 042233 3 GTLLIETMGGP-KICGFTIRSLRKHATATWARFAFNL-FVYLQAANVFGGLWYFMAIERQTECWTKACINYTGRSHCSFN 80 (392)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~~l-~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
|..=|+.=++| +-..++.+.+-.+...-|..++..+ +.+++..=+||++||++|....+
T Consensus 5 G~~Nv~~~~~~~~~~~~~~D~~~tlv~~~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gd------------------- 65 (336)
T PF01007_consen 5 GRCNVRRSNVPQKWFRYLRDLYTTLVDMSWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGD------------------- 65 (336)
T ss_dssp S-BSEEEESSTSCCHCCCHTHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------------------
T ss_pred ceeEEEEcCCChhhhhHHHHHHhhccCCCeeeeeehhHHHHHHHHHHHHHHHHHHhhhccc-------------------
Confidence 55556656666 3445556666666677787655444 35566677899999999954331
Q ss_pred cCCCCcccchhccccCCCCCCCCcccccceeccccccccCCcchHHHHHHHHHHHHHhhccccccc--ccCCChhhHHHH
Q 042233 81 CHDNLEDYTFLNEFCPMKTRNVTIHDFGIFHGALESGILEGKNFLQKILHCFIWGLQNLSNLSHNL--QTSGNVEENIFV 158 (392)
Q Consensus 81 ~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~Yi~s~Ywa~~t~ttvGyGd--i~p~~~~E~~~~ 158 (392)
+...+...+| ..|. .+ ...+..+|+||+.|+||+|||. ++|....-.+..
T Consensus 66 l~~~~~~~~~--~~Cv-----------------------~~---~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~ 117 (336)
T PF01007_consen 66 LEPIHADSNW--TPCV-----------------------SN---VNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLV 117 (336)
T ss_dssp CCTTTSBTTS---TSE-----------------------CT----TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHH
T ss_pred chhcccccCC--CCce-----------------------ec---ccchhhheeEEEEEEEEeccCCcccCCCcchhHHHH
Confidence 0000000111 1121 01 2358999999999999999999 677777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042233 159 ILVVSSGFLLFALLIGNMQRYLK 181 (392)
Q Consensus 159 i~~~i~g~~~~a~iig~i~~il~ 181 (392)
++-+++|.++.|+++|.+-.=++
T Consensus 118 ~~q~~~g~l~~a~~~Glvfar~s 140 (336)
T PF01007_consen 118 TIQSLVGLLLDAFMTGLVFARFS 140 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88899999999999987665444
No 29
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.07 E-value=3.7e-06 Score=87.04 Aligned_cols=105 Identities=17% Similarity=0.126 Sum_probs=87.5
Q ss_pred HHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhh
Q 042233 262 VTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEEL 341 (392)
Q Consensus 262 ~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ 341 (392)
.+++.+=..+......||+.++++||..+++|+|.+|.++.....++ ++..++..++.||.+|+.+
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~--------------~k~~i~~EygrGd~iG~~E 564 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSG--------------GKKEIVGEYGRGDLIGEVE 564 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccC--------------ccchhhhhccCcceeehhH
Confidence 35556666677889999999999999999999999999987754321 2235788999999999998
Q ss_pred hhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 342 IDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 342 ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
.++ ..+|..|+.|+.++++..|+..-|..+..+||.+.-
T Consensus 565 ~lt---------~~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~ 603 (1158)
T KOG2968|consen 565 MLT---------KQPRATTVMAVRDSELARIPEGLLNFIKLRYPQVVT 603 (1158)
T ss_pred Hhh---------cCCccceEEEEeehhhhhccHHHHHHHHHhccHHHH
Confidence 854 234778999999999999999999999999998764
No 30
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.06 E-value=5e-05 Score=73.71 Aligned_cols=91 Identities=11% Similarity=0.027 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhhcccccCc
Q 042233 124 FLQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLGKEMTLKPREIEEWQPFQKLS 203 (392)
Q Consensus 124 ~~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~~~~~~~~~~l~~~m~~~~lp 203 (392)
....|+.|++....|+.++||||++|+|.--+..+++.-++|+++-|.++..++.=+.-. .--+.+++||-..++.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLeLt----~aEKhVhNFMmDtqLT 359 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLELT----KAEKHVHNFMMDTQLT 359 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999999999998877644322 1123466777777666
Q ss_pred HHHHHHHHHHHHHHH
Q 042233 204 KNLQQKVKKYKSYIR 218 (392)
Q Consensus 204 ~~L~~ri~~y~~~~~ 218 (392)
+++++-..+=++..|
T Consensus 360 k~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 360 KEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666665544444333
No 31
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.96 E-value=1e-05 Score=80.56 Aligned_cols=57 Identities=12% Similarity=0.306 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
-+..|+||+++++||+|||++.|.|...++++|+..++|.-++..+++.++..+...
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999877
No 32
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=97.75 E-value=4.3e-06 Score=78.46 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHH
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLI 173 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~ii 173 (392)
--.||+||+.|||||||||..|.|..-++...++.+.|+.-.|.-+
T Consensus 394 IPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPV 439 (507)
T KOG1545|consen 394 IPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPV 439 (507)
T ss_pred CcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccc
Confidence 3458999999999999999999999999999999999987766544
No 33
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.63 E-value=0.00019 Score=74.77 Aligned_cols=105 Identities=11% Similarity=0.067 Sum_probs=83.9
Q ss_pred HHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechh-hhhh
Q 042233 266 ALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEE-LIDW 344 (392)
Q Consensus 266 ~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~-~ll~ 344 (392)
+++.+++...+..||+|++.|++.+.+|.+.+|.+.+...++ .+++..++...+|+.|-.. +++-
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~--------------~g~~~llk~V~~G~~~tSllSiLd 175 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNG--------------DGKEYLLKTVPPGGSFTSLLSILD 175 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCC--------------CCceeeEeeccCCCchHhHHHHHH
Confidence 344788889999999999999999999999999999887653 3456788999999766443 4433
Q ss_pred hhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHh
Q 042233 345 ALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQ 387 (392)
Q Consensus 345 ~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~ 387 (392)
.++..| ...++..++|.++|.+..++.+.|.++..+||+-
T Consensus 176 ~l~~~p---s~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s 215 (1158)
T KOG2968|consen 176 SLPGFP---SLSRTIAAKAATDCTVARIPYTSFRESFHKNPES 215 (1158)
T ss_pred hccCCC---cccceeeeeeecCceEEEeccchhhhhhccChHH
Confidence 233322 2346778999999999999999999999999974
No 34
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.49 E-value=0.00011 Score=72.90 Aligned_cols=59 Identities=10% Similarity=0.219 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 125 LQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 125 ~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
-..|-.|+|+.+.||+||||||+...|...+.|.+|..+.|..+||-.+-.|.+++.+-
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr 344 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNR 344 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccc
Confidence 34689999999999999999999999999999999999999999999999999888776
No 35
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.0032 Score=60.26 Aligned_cols=55 Identities=11% Similarity=0.296 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhcccccccccC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTS--GNVEENIFVILVVSSGFLLFALLIGNMQRYLK 181 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p--~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~ 181 (392)
-...||-|++-|=||+|||-=.+ .-..-.+..++-+++|+++-|+++|.+-.=++
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKia 168 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIA 168 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999997543 33344556666778899999999987655443
No 36
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.00 E-value=0.0086 Score=53.37 Aligned_cols=96 Identities=8% Similarity=-0.006 Sum_probs=70.8
Q ss_pred HHHHHhhhcceeeeCCCCEE-EecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhh
Q 042233 263 TLDALCDCVKPTFFTEHTHL-IREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEEL 341 (392)
Q Consensus 263 ~l~~l~~~l~~~~~~~ge~I-~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ 341 (392)
..+.+...-++..+.+|..+ ....+..+.++++.+|.|.+...++ ..+.+..+...||-..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~------------------ll~~t~~aP~IlGl~~ 75 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREEN------------------VLIGITQAPYIMGLAD 75 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCC------------------eEEEeccCCeEeeccc
Confidence 45566667778889999997 5444444679999999999954322 3556778888888864
Q ss_pred hhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcH
Q 042233 342 IDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMM 385 (392)
Q Consensus 342 ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P 385 (392)
.+. .....+..+|.++|+++.+++++|.++++++.
T Consensus 76 ~~~---------~~~~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 76 GLM---------KNDIPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred ccC---------CCCceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 321 11224679999999999999999999999863
No 37
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.00018 Score=68.38 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 042233 125 LQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFAL----LIGNMQRYLKLG 183 (392)
Q Consensus 125 ~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~----iig~i~~il~~~ 183 (392)
++.--.+|++.+.||||.||||.+|.|...++|..++.+.|+++.|. ++++++.|..+-
T Consensus 354 FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQN 416 (632)
T KOG4390|consen 354 FTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQN 416 (632)
T ss_pred cccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhh
Confidence 33445789999999999999999999999999999999999998885 556666665443
No 38
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.94 E-value=0.011 Score=49.55 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=81.8
Q ss_pred cCcHHHHHHHhhh-cceeeeCCCCEEEecC-CCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCC
Q 042233 258 KLNEVTLDALCDC-VKPTFFTEHTHLIREG-DPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGD 335 (392)
Q Consensus 258 ~~s~~~l~~l~~~-l~~~~~~~ge~I~~~g-d~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~ 335 (392)
+.|....++|+.. .+.....+|+.-..|| .+.|.+-++++|.+.|...+ ..+-.+.|-+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g-------------------~fLH~I~p~q 74 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDG-------------------RFLHYIYPYQ 74 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECC-------------------EeeEeecccc
Confidence 3578888888887 5667789999998888 56789999999999999743 2333566666
Q ss_pred eechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhcc
Q 042233 336 FYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLGL 390 (392)
Q Consensus 336 ~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 390 (392)
+....++.. +.+ .....-..|+.|.+.|..+..+|+.+..++.+.|-+-..
T Consensus 75 FlDSPEW~s-~~~---s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~v 125 (153)
T PF04831_consen 75 FLDSPEWES-LRP---SEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAV 125 (153)
T ss_pred cccChhhhc-ccc---CCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHH
Confidence 666655522 111 111234578999999999999999999999999877544
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.00023 Score=66.32 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKL 182 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~ 182 (392)
+..-|||||.+.+||+|||-.+|.|..-++|+|+.-++|+-+--.++.++++-+..
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt 135 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNT 135 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999988777777776654433
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.00084 Score=62.68 Aligned_cols=57 Identities=7% Similarity=0.095 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhcccccccccCCCh-------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNV-------E-ENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~-------~-E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
.|+.|+||.+.|+||+|+||.+|... . -+.++.+.+++|..+++-.++.+.-.+..+
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~ 250 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTM 250 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 39999999999999999999887433 2 246777888899999888888777666555
No 41
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.47 E-value=0.0082 Score=61.09 Aligned_cols=113 Identities=12% Similarity=0.220 Sum_probs=88.6
Q ss_pred HHHHhhcccccccCcHHHHHHHhhhcceeee-CCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcc
Q 042233 246 CWNLLKKVQGFRKLNEVTLDALCDCVKPTFF-TEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKN 324 (392)
Q Consensus 246 ~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~-~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~ 324 (392)
..++..+.|-|.+++-...++||..|-.... ..|.+|+..|+.-++.+.|++|.|++..+++.+.
T Consensus 279 LLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e-------------- 344 (1283)
T KOG3542|consen 279 LLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKRE-------------- 344 (1283)
T ss_pred HHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceE--------------
Confidence 3577888999999999999999998876654 6899999999999999999999999999887543
Q ss_pred ccccccccCCCeechhhhhhhhccCCCCCCCCcceeEE-EcceEEEEEecHHHHHHHHHHcHH
Q 042233 325 TRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQ-ALTNVDAFMLMADDLKIVFNDMMN 386 (392)
Q Consensus 325 ~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~-A~~~~~l~~L~~~~f~~ll~~~P~ 386 (392)
.+.-|+.||..-- ........-++ -+.+|+...|...|+-.++.+--+
T Consensus 345 -----~l~mGnSFG~~PT---------~dkqym~G~mRTkVDDCqFVciaqqDycrIln~vek 393 (1283)
T KOG3542|consen 345 -----ELKMGNSFGAEPT---------PDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNTVEK 393 (1283)
T ss_pred -----EeecccccCCCCC---------cchhhhhhhhheecccceEEEeehhhHHHHHHHHHh
Confidence 7889999997621 11111111222 357899999999999999876543
No 42
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.34 E-value=0.0024 Score=63.42 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhH--------HHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEEN--------IFVILVVSSGFLLFALLI 173 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~--------~~~i~~~i~g~~~~a~ii 173 (392)
-|+.|+||+++++||+|+||+.|.+...+ ....+..++|...++.+.
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 58899999999999999999999998866 577788888887777666
No 43
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=94.21 E-value=0.066 Score=54.80 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=73.3
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
...|.+...|+++-..-++.++...+.+.++...++++.|+.+.+.|++++|.|-+...
T Consensus 36 ~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~gq--------------------- 94 (1283)
T KOG3542|consen 36 YEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEGQ--------------------- 94 (1283)
T ss_pred HHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeecc---------------------
Confidence 34677788899998999999999999999999999999999999999999999987642
Q ss_pred ccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEec
Q 042233 327 KEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLM 373 (392)
Q Consensus 327 ~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~ 373 (392)
.+-|-.+||... ...|+.+.--+..++..+++
T Consensus 95 ---i~mp~~~fgkr~------------g~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 95 ---IYMPYGCFGKRT------------GQNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred ---eecCcccccccc------------ccccccceeeecccceeeee
Confidence 456666788761 22367777777777777763
No 44
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=87.69 E-value=0.13 Score=51.55 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcccccccccCCChhhHHHHHH
Q 042233 129 LHCFIWGLQNLSNLSHNLQTSGNVEENIFVIL 160 (392)
Q Consensus 129 i~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~ 160 (392)
..|+||.+.|++||||||-.|.-..-.++..+
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi 250 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVI 250 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHH
Confidence 46889999999999999999965554444333
No 45
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=85.36 E-value=3.8 Score=35.82 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=45.4
Q ss_pred hcchhHHHhhcccccCcHHHHHHHHHHHHHHHhh--cCCCcHHHHHhhC--cHHHHHHHHHHH
Q 042233 187 TLKPREIEEWQPFQKLSKNLQQKVKKYKSYIRRK--TDYIDVQNLLNNL--PNELRRELKREL 245 (392)
Q Consensus 187 ~~~~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~ei~~~~ 245 (392)
++-+++++++++ ++|++-++++.+||+-+.+. .++.+|+++.++| |.++-+++..+.
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 345677888986 59999999999999988865 3567899999997 777777776554
No 46
>COG4709 Predicted membrane protein [Function unknown]
Probab=85.36 E-value=3.8 Score=35.81 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=52.5
Q ss_pred cchhHHHhhcccccCcHHHHHHHHHHHHHHHhhc--CCCcHHHHHhhC--cHHHHHHHHHHHHHHHhhcccccccCcHH
Q 042233 188 LKPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKT--DYIDVQNLLNNL--PNELRRELKRELCWNLLKKVQGFRKLNEV 262 (392)
Q Consensus 188 ~~~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~~--~~~~~~~il~~L--p~~Lr~ei~~~~~~~~l~~i~~F~~~s~~ 262 (392)
+-++++++|+ +++|++.++.+..+|+-++... .+.+|+|+.++| |.++-.|+..+.-.+-.+.-|-+++.+..
T Consensus 5 efL~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 5 EFLNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 4456778887 4799999999999998877653 567799999988 66666676666555555555555555443
No 47
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=81.30 E-value=2 Score=30.75 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=24.1
Q ss_pred eeeCCCCEEEecCCCCC-eEEEEEeeeEEEEE
Q 042233 274 TFFTEHTHLIREGDPID-EMIFVVQGKLRTYT 304 (392)
Q Consensus 274 ~~~~~ge~I~~~gd~~~-~lyfI~~G~V~v~~ 304 (392)
..++||+.+-..-.... .+++|++|++.+..
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~ 34 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV 34 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE
Confidence 45788887655555555 89999999999995
No 48
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=78.13 E-value=3.1 Score=34.53 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhhcccc
Q 042233 123 NFLQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLGKEMTLKPREIEEWQPFQ 200 (392)
Q Consensus 123 s~~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~~~~~~~~~~l~~~m~~~ 200 (392)
........++++++.+++. +-++..|.+...|++.+++.+++.++.+..-+++++++... +.+..++.+++..++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~-~~~~~i~sl~dL~~~~ 115 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP-KYEPPIDSLEDLANSG 115 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHTSS-SSHHHHHTHS
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcCCCCCCHHHHHHCC
Confidence 3455677788888877776 55678999999999999999999999999999999887665 3444566666666555
No 49
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=71.16 E-value=9.1 Score=30.49 Aligned_cols=45 Identities=29% Similarity=0.460 Sum_probs=33.9
Q ss_pred ccCcHHHHHHHHHHHHHHHhhc----------CCCcHHHHHhhCcHHHHHHHHHH
Q 042233 200 QKLSKNLQQKVKKYKSYIRRKT----------DYIDVQNLLNNLPNELRRELKRE 244 (392)
Q Consensus 200 ~~lp~~L~~ri~~y~~~~~~~~----------~~~~~~~il~~Lp~~Lr~ei~~~ 244 (392)
.-||.++|..|...+.-.-... ...+.-.++..||+.||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 3489999999998877543321 22445789999999999999764
No 50
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=69.69 E-value=5.1 Score=29.49 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=24.4
Q ss_pred CeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeech
Q 042233 290 DEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339 (392)
Q Consensus 290 ~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe 339 (392)
+++.+|++|.|.+...++.. ..+++||.|=-
T Consensus 26 ~E~~~vleG~v~it~~~G~~-------------------~~~~aGD~~~~ 56 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDEDGET-------------------VTFKAGDAFFL 56 (74)
T ss_dssp EEEEEEEEEEEEEEETTTEE-------------------EEEETTEEEEE
T ss_pred CEEEEEEEeEEEEEECCCCE-------------------EEEcCCcEEEE
Confidence 78889999999999865433 27999998743
No 51
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=61.63 E-value=33 Score=28.05 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=31.9
Q ss_pred ceeeeCCCCEEEecCCCCCeEEEEEeeeEEEE-EecCCccCcccCCcccccCccccccccccCCCeechh
Q 042233 272 KPTFFTEHTHLIREGDPIDEMIFVVQGKLRTY-TFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEE 340 (392)
Q Consensus 272 ~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~ 340 (392)
....+.||..+-..--...++++|++|++.+. ..++.. -.+.+||.+--.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~-------------------~~L~aGD~i~~~ 88 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEV-------------------HPIRPGTMYALD 88 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEE-------------------EEeCCCeEEEEC
Confidence 34567888755322112247999999999998 432222 279999987544
No 52
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=56.44 E-value=20 Score=29.28 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=28.5
Q ss_pred hhcceeeeCCCCEE-EecCCCCCeEEEEEeeeEEEEEec
Q 042233 269 DCVKPTFFTEHTHL-IREGDPIDEMIFVVQGKLRTYTFK 306 (392)
Q Consensus 269 ~~l~~~~~~~ge~I-~~~gd~~~~lyfI~~G~V~v~~~~ 306 (392)
..++...+.||+-+ .+--...+++|+|++|...+...+
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~ 74 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG 74 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC
Confidence 34566778888885 444444789999999999998853
No 53
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=55.48 E-value=1.5e+02 Score=31.85 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=38.2
Q ss_pred cccccccccCCChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhcchhHHHhhcccccCcHHHHH
Q 042233 140 SNLSHNLQTSGNVE------ENIFVILVVSSGFLLFALLIGNMQRYLKLG-----KEMTLKPREIEEWQPFQKLSKNLQQ 208 (392)
Q Consensus 140 ttvGyGdi~p~~~~------E~~~~i~~~i~g~~~~a~iig~i~~il~~~-----~~~~~~~~~l~~~m~~~~lp~~L~~ 208 (392)
.|+|+||....... -.+|.+++.++...++-.+|+-|++-..+. ++.+.+.- ..--|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A-~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWA-ATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHH-HHHHHHHhcCCHHHHH
Confidence 58999998654333 234444455555555555555555554444 22222222 2223446788888877
Q ss_pred HHH
Q 042233 209 KVK 211 (392)
Q Consensus 209 ri~ 211 (392)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 633
No 54
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=54.55 E-value=26 Score=28.55 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=38.5
Q ss_pred cceeeeCCCCEEEecCCC-CCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechh
Q 042233 271 VKPTFFTEHTHLIREGDP-IDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEE 340 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~-~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~ 340 (392)
+....+.||..+-.---+ .+...+|++|++.+... +.. ..+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~-------------------~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEK-------------------KELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCc-------------------eEecCCCEEEEC
Confidence 445668888888777666 77899999999999986 322 179999998665
No 55
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=52.54 E-value=40 Score=28.89 Aligned_cols=50 Identities=14% Similarity=0.333 Sum_probs=31.4
Q ss_pred ceeee-CCCCEE-EecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeec
Q 042233 272 KPTFF-TEHTHL-IREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYG 338 (392)
Q Consensus 272 ~~~~~-~~ge~I-~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FG 338 (392)
+...+ .||..- +... ..+++|++++|.+.+...++++ .....+++|++|=
T Consensus 30 ~v~~vgGpn~R~d~H~~-~tdE~FyqleG~~~l~v~d~g~----------------~~~v~L~eGd~fl 81 (159)
T TIGR03037 30 MVTVVGGPNARTDFHDD-PGEEFFYQLKGEMYLKVTEEGK----------------REDVPIREGDIFL 81 (159)
T ss_pred EEEEeCCCCCCcccccC-CCceEEEEEcceEEEEEEcCCc----------------EEEEEECCCCEEE
Confidence 33344 454443 3333 3689999999999997655432 1123789998873
No 56
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=50.35 E-value=47 Score=26.37 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=31.9
Q ss_pred cCcHHHHHHHHHHHHHHHhhc---------C-C-C-c-HHHHHhhCcHHHHHHHHHHHHHHHh
Q 042233 201 KLSKNLQQKVKKYKSYIRRKT---------D-Y-I-D-VQNLLNNLPNELRRELKRELCWNLL 250 (392)
Q Consensus 201 ~lp~~L~~ri~~y~~~~~~~~---------~-~-~-~-~~~il~~Lp~~Lr~ei~~~~~~~~l 250 (392)
-||.+++.+|..-..-.-... . . . + ..++|..||+.||.+|........-
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~~ 70 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRERR 70 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 478899988854433221100 0 0 0 1 2589999999999999888765443
No 57
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=48.87 E-value=19 Score=32.10 Aligned_cols=59 Identities=25% Similarity=0.394 Sum_probs=42.1
Q ss_pred hhCcHHHHHHHHHHHHHHHhhcccccc-cCcHHHHHHHhhhcceee--eCCCCEEEecCCCCC
Q 042233 231 NNLPNELRRELKRELCWNLLKKVQGFR-KLNEVTLDALCDCVKPTF--FTEHTHLIREGDPID 290 (392)
Q Consensus 231 ~~Lp~~Lr~ei~~~~~~~~l~~i~~F~-~~s~~~l~~l~~~l~~~~--~~~ge~I~~~gd~~~ 290 (392)
..+|+. ..++...+...+++-.-.|. ..++....+......+.. +.+||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 345555 34455555555554444443 467788899999999999 999999999999765
No 58
>PLN03223 Polycystin cation channel protein; Provisional
Probab=48.39 E-value=5e+02 Score=30.27 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=15.0
Q ss_pred HHHhhCcHHHHHHHHHHHHHHHhhccc
Q 042233 228 NLLNNLPNELRRELKRELCWNLLKKVQ 254 (392)
Q Consensus 228 ~il~~Lp~~Lr~ei~~~~~~~~l~~i~ 254 (392)
.++.-+..+|-.+-..++.++.+...|
T Consensus 1491 ~~~~~~~~~~d~~~l~~v~~~c~~~~~ 1517 (1634)
T PLN03223 1491 KVFTYLNKELDEAGLKRVLRRCVIETY 1517 (1634)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 455556666665555555555554443
No 59
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=46.34 E-value=93 Score=27.15 Aligned_cols=86 Identities=9% Similarity=0.178 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhcchhHHHhhcccccCcHHHHHHHHHHHHHHHhhcCC-CcHHHHHhhCcHHHHHHHHHH
Q 042233 167 LLFALLIGNMQRYLKLG-KEMTLKPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDY-IDVQNLLNNLPNELRRELKRE 244 (392)
Q Consensus 167 ~~~a~iig~i~~il~~~-~~~~~~~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~-~~~~~il~~Lp~~Lr~ei~~~ 244 (392)
-+.+|+=..+-..+..+ .++...++.-..-+-.-.|-+.+-.||+-|.+..-..+.. .++..+-+.+-..+|.+|...
T Consensus 87 ~v~~yL~~e~p~~l~~~e~~~~~~ld~~y~~~IieDIrKQl~~RI~~YlqQ~~~~~~~~~~~~~~~~~I~~kvK~DI~~a 166 (176)
T PF10737_consen 87 EVHQYLEEEAPQRLEQLEQQYNVPLDDSYRSFIIEDIRKQLPQRIQFYLQQVQPNEQMPPNEEAWEQQIIQKVKRDIDKA 166 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777 6777777665555555666677777888877755543321 233334444555555555554
Q ss_pred HHHHHhhcc
Q 042233 245 LCWNLLKKV 253 (392)
Q Consensus 245 ~~~~~l~~i 253 (392)
+ ..+|.++
T Consensus 167 i-~~FL~hL 174 (176)
T PF10737_consen 167 I-DHFLQHL 174 (176)
T ss_pred H-HHHHHhC
Confidence 4 3444443
No 60
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.89 E-value=1.7e+02 Score=31.53 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=35.0
Q ss_pred hhCcHHHHHHHHHHHHHHHhh-----cccccccCcHHHHHHHhhhcce
Q 042233 231 NNLPNELRRELKRELCWNLLK-----KVQGFRKLNEVTLDALCDCVKP 273 (392)
Q Consensus 231 ~~Lp~~Lr~ei~~~~~~~~l~-----~i~~F~~~s~~~l~~l~~~l~~ 273 (392)
++||+.||+++..+...++.. .-.+++++|++..++|+.++-.
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~ 418 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCL 418 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhH
Confidence 479999999999888766654 4568899999999999887743
No 61
>PHA02909 hypothetical protein; Provisional
Probab=42.63 E-value=57 Score=22.47 Aligned_cols=28 Identities=14% Similarity=0.413 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042233 30 TWARFAFNLFVYLQAANVFGGLWYFMAI 57 (392)
Q Consensus 30 ~w~~~~~~l~~~~l~~H~~aC~w~~i~~ 57 (392)
.-+.+.+.+++++-.....||.+-++|+
T Consensus 34 imvsfilfviiflsmftilacsyvyiai 61 (72)
T PHA02909 34 IMVSFILFVIIFLSMFTILACSYVYIAI 61 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455565566666677899999999993
No 62
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=39.54 E-value=1.2e+02 Score=31.84 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 125 LQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYL 180 (392)
Q Consensus 125 ~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il 180 (392)
....-.+++|+-..+...|-|.-+|.+..-++..+++.=+..++.|-..++++..+
T Consensus 611 alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 611 ALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred hcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 33456788888899999999999999999999998888777777776666665544
No 63
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=39.42 E-value=66 Score=27.10 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhcchhHHHhhcc
Q 042233 158 VILVVSSGFLLFALLIGNMQRYLKLG-----------------KEMTLKPREIEEWQP 198 (392)
Q Consensus 158 ~i~~~i~g~~~~a~iig~i~~il~~~-----------------~~~~~~~~~l~~~m~ 198 (392)
.+++.++|..+||++++-+.+.-... ++|+.+++...+.++
T Consensus 9 ~lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k 66 (145)
T PF13623_consen 9 GLLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYK 66 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHH
Confidence 36778999999999997653321111 577777777765544
No 64
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=39.34 E-value=2.7e+02 Score=30.29 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 042233 37 NLFVYLQAANVFGGLWYFMAIE 58 (392)
Q Consensus 37 ~l~~~~l~~H~~aC~w~~i~~~ 58 (392)
.++++-+.+|++--.||+.+..
T Consensus 512 ~lvl~aF~iGl~qLy~yy~~~~ 533 (822)
T KOG3609|consen 512 VLVLVAFSIGLNQLYDYYLNRK 533 (822)
T ss_pred HHHHHHHHhccchHhhhhcchh
Confidence 4455567779999999999843
No 65
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=39.07 E-value=67 Score=26.71 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=35.2
Q ss_pred hcceeeeCCCCEEEecCC-CCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeech
Q 042233 270 CVKPTFFTEHTHLIREGD-PIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339 (392)
Q Consensus 270 ~l~~~~~~~ge~I~~~gd-~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe 339 (392)
.+....+.||...-..-- ..+++++|++|...+...+.. +++.....+.+||.+=.
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~--------------~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPN--------------GNKVYDARLREGDVFVV 87 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCC--------------CCeEEEEEecCCCEEEE
Confidence 344556778877644432 256899999999999864321 01223447888887644
No 66
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=39.07 E-value=1.3e+02 Score=20.94 Aligned_cols=13 Identities=31% Similarity=0.166 Sum_probs=7.0
Q ss_pred HHhcchhHHHhhc
Q 042233 185 EMTLKPREIEEWQ 197 (392)
Q Consensus 185 ~~~~~~~~l~~~m 197 (392)
+..+|++++-+-+
T Consensus 43 ~~eqKLDrIIeLL 55 (58)
T PF13314_consen 43 SMEQKLDRIIELL 55 (58)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666555544
No 67
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=38.57 E-value=21 Score=24.89 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhccccc
Q 042233 127 KILHCFIWGLQNLSNLSH 144 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGy 144 (392)
||+.++.|++.-.--+||
T Consensus 2 kyivt~fWs~il~~vvgy 19 (57)
T PF11151_consen 2 KYIVTFFWSFILGEVVGY 19 (57)
T ss_pred cEEehhHHHHHHHHHHHH
Confidence 688899999888777777
No 68
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=37.86 E-value=30 Score=26.31 Aligned_cols=16 Identities=19% Similarity=0.507 Sum_probs=13.3
Q ss_pred eEEEEEeeeEEEEEec
Q 042233 291 EMIFVVQGKLRTYTFK 306 (392)
Q Consensus 291 ~lyfI~~G~V~v~~~~ 306 (392)
-.++|.+|.|++..++
T Consensus 35 ~vF~V~~G~v~Vti~~ 50 (85)
T PF11699_consen 35 MVFYVIKGKVEVTIHE 50 (85)
T ss_dssp EEEEEEESEEEEEETT
T ss_pred EEEEEEeCEEEEEEcC
Confidence 3688999999999854
No 69
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=37.07 E-value=1.8e+02 Score=22.29 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=39.1
Q ss_pred hcchhHHHhhccc-ccCcHHHHHHHHHHHHHHHhhcCCCcH--HHHHhhCcHHHHHHHHHHHHH
Q 042233 187 TLKPREIEEWQPF-QKLSKNLQQKVKKYKSYIRRKTDYIDV--QNLLNNLPNELRRELKRELCW 247 (392)
Q Consensus 187 ~~~~~~l~~~m~~-~~lp~~L~~ri~~y~~~~~~~~~~~~~--~~il~~Lp~~Lr~ei~~~~~~ 247 (392)
....+.+.++|.+ .++++.-+.++++.++..-.......+ ..+...+++..|..+...+..
T Consensus 18 ~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~ 81 (104)
T cd07313 18 EEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWE 81 (104)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455667788777 489999999999888766544322221 334445567777776655543
No 70
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=36.97 E-value=78 Score=27.73 Aligned_cols=52 Identities=6% Similarity=0.088 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHH
Q 042233 123 NFLQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIG 174 (392)
Q Consensus 123 s~~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig 174 (392)
++.-.|..=+|+|++.-+|..-.|+.+.+..=|-.+..=.+++.++.+.+++
T Consensus 128 ~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 128 DWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344689999999999999999999998888888877777777777666653
No 71
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=36.28 E-value=82 Score=27.50 Aligned_cols=35 Identities=17% Similarity=0.494 Sum_probs=25.7
Q ss_pred CCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCee
Q 042233 287 DPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFY 337 (392)
Q Consensus 287 d~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~F 337 (392)
+..+++|++++|.+.+...++++. ....+.+|++|
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~----------------~~v~L~eGd~f 86 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKR----------------RDVPIREGEMF 86 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCce----------------eeEEECCCCEE
Confidence 567899999999999887654320 12278999887
No 72
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=36.06 E-value=2e+02 Score=22.12 Aligned_cols=33 Identities=9% Similarity=-0.084 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHH-------HHHhcchhHHHhhcccccCc
Q 042233 171 LLIGNMQRYLKLG-------KEMTLKPREIEEWQPFQKLS 203 (392)
Q Consensus 171 ~iig~i~~il~~~-------~~~~~~~~~l~~~m~~~~lp 203 (392)
|..++++-=+... ++.++++++.++.++++++.
T Consensus 51 Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 51 YSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5555554433333 67778888888888888764
No 73
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=34.42 E-value=62 Score=24.01 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=29.3
Q ss_pred HHHHhhCcHHHHHHHHHHHHHHHhhcccccccCcHHHHHHHhhhccee
Q 042233 227 QNLLNNLPNELRRELKRELCWNLLKKVQGFRKLNEVTLDALCDCVKPT 274 (392)
Q Consensus 227 ~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~ 274 (392)
.++|..||+.+|.++...+ --+..++++.++.+-..++.+
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~~ 69 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEEK 69 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHHH
Confidence 4789999999998776554 456677888888887776654
No 74
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=32.85 E-value=1.7e+02 Score=22.06 Aligned_cols=64 Identities=23% Similarity=0.250 Sum_probs=42.3
Q ss_pred hcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccC
Q 042233 270 CVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDR 349 (392)
Q Consensus 270 ~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~ 349 (392)
......+.||..+-...-.+.+-.||++|.... ++ . .+.+|++.=..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~-~--------------------~~~~G~~~~~p--------- 71 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GD-G--------------------RYGAGDWLRLP--------- 71 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TT-C--------------------EEETTEEEEE----------
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CC-c--------------------cCCCCeEEEeC---------
Confidence 345567788888876666667788999999873 11 1 57888775332
Q ss_pred CCCCCCCcceeEEEcceEEEEE
Q 042233 350 FSFDIPKSNRTIQALTNVDAFM 371 (392)
Q Consensus 350 ~~~~~~~r~~tv~A~~~~~l~~ 371 (392)
+.+..+..+.+.|.++.
T Consensus 72 -----~g~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 72 -----PGSSHTPRSDEGCLILV 88 (91)
T ss_dssp -----TTEEEEEEESSCEEEEE
T ss_pred -----CCCccccCcCCCEEEEE
Confidence 23456788888898875
No 75
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=31.78 E-value=48 Score=25.12 Aligned_cols=56 Identities=20% Similarity=0.362 Sum_probs=31.1
Q ss_pred hhHHHhhcccccCcHHHHHHHHHHHHHHHhh--cCCCcHHHHHh--------hCcHHHHHHHHHHH
Q 042233 190 PREIEEWQPFQKLSKNLQQKVKKYKSYIRRK--TDYIDVQNLLN--------NLPNELRRELKREL 245 (392)
Q Consensus 190 ~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~--~~~~~~~~il~--------~Lp~~Lr~ei~~~~ 245 (392)
.+.++++++.+-....-+..|+++..-..+. ....+-+++++ .+|+..|.++...+
T Consensus 16 ~~~L~~~L~~rL~e~GW~d~vr~~~re~i~~~g~~~~~~~~l~~~i~P~Ar~~VP~~vk~ell~~I 81 (86)
T PF10163_consen 16 YERLKELLRQRLIECGWRDEVRQLCREIIRERGIDNLTFEDLLEEITPKARAMVPDEVKKELLQRI 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TTTSBHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3456666665555555566666666655555 34455555554 45666666655544
No 76
>PHA01757 hypothetical protein
Probab=31.07 E-value=1.8e+02 Score=21.68 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=26.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 150 GNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 150 ~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
.+..|-..--|+...|.+.-++++|.+..+..+.
T Consensus 3 i~l~e~al~gf~a~~g~l~~~fii~e~~hlynek 36 (98)
T PHA01757 3 ITLLEGALYGFFAVTGALSASFIIGEIVHLYNEK 36 (98)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3556777777888888888889999888766554
No 77
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=30.75 E-value=51 Score=28.08 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=26.5
Q ss_pred CCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechh
Q 042233 287 DPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEE 340 (392)
Q Consensus 287 d~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~ 340 (392)
...+++++|++|+..+...++.. .+.+||+.|-.
T Consensus 62 s~edEfv~ILeGE~~l~~d~~e~--------------------~lrpGD~~gFp 95 (161)
T COG3837 62 SAEDEFVYILEGEGTLREDGGET--------------------RLRPGDSAGFP 95 (161)
T ss_pred ccCceEEEEEcCceEEEECCeeE--------------------EecCCceeecc
Confidence 34568999999999988754322 79999998866
No 78
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=30.67 E-value=1.9e+02 Score=28.35 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 125 LQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLK 181 (392)
Q Consensus 125 ~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~ 181 (392)
.--|+.+|-|++..+.+++-++....-..-..+++++.+++.+.|-|.|..++..++
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iq 154 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQ 154 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 556999999999999988876652222333777777888888888888887776553
No 79
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=29.98 E-value=2e+02 Score=28.10 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=40.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcchhHHHhhcccccCcHHHHHHHHH
Q 042233 149 SGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG----KEMTLKPREIEEWQPFQKLSKNLQQKVKK 212 (392)
Q Consensus 149 p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~----~~~~~~~~~l~~~m~~~~lp~~L~~ri~~ 212 (392)
+......+...+..+++.+..++++-.+....-+. ++.+-..+++++-.|+..-+++++.|+|+
T Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~ 239 (349)
T PRK12721 172 AACGLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRE 239 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 33444455556666666655555554444444333 34444456788888888889988888875
No 80
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=29.17 E-value=61 Score=22.62 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=19.3
Q ss_pred cccCcHHHHHHHHHHHHHHHhh
Q 042233 199 FQKLSKNLQQKVKKYKSYIRRK 220 (392)
Q Consensus 199 ~~~lp~~L~~ri~~y~~~~~~~ 220 (392)
..++|.+|++.+..|.+|..++
T Consensus 8 fqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHH
Confidence 4679999999999999998765
No 81
>PRK11171 hypothetical protein; Provisional
Probab=28.24 E-value=1e+02 Score=28.67 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=28.6
Q ss_pred hcceeeeCCCCEEEe-cCCCCCeEEEEEeeeEEEEEe
Q 042233 270 CVKPTFFTEHTHLIR-EGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 270 ~l~~~~~~~ge~I~~-~gd~~~~lyfI~~G~V~v~~~ 305 (392)
.+....+.||..+-. .....++.++|++|+..+...
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~ 221 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLN 221 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEEC
Confidence 455677899998866 356667899999999999764
No 82
>PRK09108 type III secretion system protein HrcU; Validated
Probab=27.59 E-value=2.6e+02 Score=27.36 Aligned_cols=65 Identities=6% Similarity=0.103 Sum_probs=42.8
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcchhHHHhhcccccCcHHHHHHHHH
Q 042233 148 TSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG----KEMTLKPREIEEWQPFQKLSKNLQQKVKK 212 (392)
Q Consensus 148 ~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~----~~~~~~~~~l~~~m~~~~lp~~L~~ri~~ 212 (392)
.|......++.++..++..+..++++-.+..+.-+. ++.+-.-+++++-.|+..-+++++.|+|+
T Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 173 SPPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 344455556666666666666666555555555444 34444456788888888889988888875
No 83
>PRK08156 type III secretion system protein SpaS; Validated
Probab=27.51 E-value=2.4e+02 Score=27.70 Aligned_cols=63 Identities=16% Similarity=0.072 Sum_probs=38.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcchhHHHhhcccccCcHHHHHHHHHH
Q 042233 151 NVEENIFVILVVSSGFLLFALLIGNMQRYLKLG----KEMTLKPREIEEWQPFQKLSKNLQQKVKKY 213 (392)
Q Consensus 151 ~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~----~~~~~~~~~l~~~m~~~~lp~~L~~ri~~y 213 (392)
.....+...+..++..+..++++-.+....-+. ++.+-..+++++-.|+..-+++++.|+|+-
T Consensus 169 ~~~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~~ 235 (361)
T PRK08156 169 GLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREA 235 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 334444444444444444444444444444333 444555578999999999999999998864
No 84
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=27.09 E-value=91 Score=32.44 Aligned_cols=73 Identities=10% Similarity=0.128 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhhcccccC
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLGKEMTLKPREIEEWQPFQKL 202 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~~~~~~~~~~l~~~m~~~~l 202 (392)
-..|++|++..+..-|. ||.|.+..-++...++-++..++.+--.++++..++- +.+..-++.+++..++..+
T Consensus 596 ifNsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTv-ErMvsPIESaEDLAkQteI 668 (897)
T KOG1054|consen 596 IFNSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV-ERMVSPIESAEDLAKQTEI 668 (897)
T ss_pred hhHHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHHHHHhH-HhhcCcchhHHHHhhccee
Confidence 34799999999999887 9999999999999888877777766555666655432 3444444455555554443
No 85
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=27.00 E-value=2.5e+02 Score=27.58 Aligned_cols=62 Identities=8% Similarity=0.117 Sum_probs=37.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcchhHHHhhcccccCcHHHHHHHHH
Q 042233 151 NVEENIFVILVVSSGFLLFALLIGNMQRYLKLG----KEMTLKPREIEEWQPFQKLSKNLQQKVKK 212 (392)
Q Consensus 151 ~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~----~~~~~~~~~l~~~m~~~~lp~~L~~ri~~ 212 (392)
.....+...+..++..+..++++-.+..+.-+. ++.+-..+++++-.|+..-+++++.|+|+
T Consensus 181 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~ 246 (359)
T PRK05702 181 AALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQ 246 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 344445555555555555554444444444333 34444446788888888888888888775
No 86
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=26.95 E-value=56 Score=20.10 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=18.2
Q ss_pred chhHHHhhcccccCcH-----HHHHHHHHHH
Q 042233 189 KPREIEEWQPFQKLSK-----NLQQKVKKYK 214 (392)
Q Consensus 189 ~~~~l~~~m~~~~lp~-----~L~~ri~~y~ 214 (392)
++.++.++++.+++|. +|..|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 3457788888888874 6777877764
No 87
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=26.25 E-value=67 Score=23.00 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.4
Q ss_pred ccCcHHHHHHHHHHHHHHHhhc
Q 042233 200 QKLSKNLQQKVKKYKSYIRRKT 221 (392)
Q Consensus 200 ~~lp~~L~~ri~~y~~~~~~~~ 221 (392)
++||+++++.|..|.+|...+.
T Consensus 10 ~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 10 QQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHCCHHHHHHHHHHHHHHHHhc
Confidence 6799999999999999988764
No 88
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=26.11 E-value=2.6e+02 Score=27.23 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=36.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcchhHHHhhcccccCcHHHHHHHHH
Q 042233 151 NVEENIFVILVVSSGFLLFALLIGNMQRYLKLG----KEMTLKPREIEEWQPFQKLSKNLQQKVKK 212 (392)
Q Consensus 151 ~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~----~~~~~~~~~l~~~m~~~~lp~~L~~ri~~ 212 (392)
.....++..+..++..+..++++-.+....-+. ++.+-..+++++-.|+..-+++++.|+|+
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~ 238 (342)
T TIGR01404 173 GLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRE 238 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 334444455555555555444444444443333 34444456788888888888888888875
No 89
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=25.97 E-value=2.6e+02 Score=27.25 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcchhHHHhhcccccCcHHHHHHHHH
Q 042233 152 VEENIFVILVVSSGFLLFALLIGNMQRYLKLG----KEMTLKPREIEEWQPFQKLSKNLQQKVKK 212 (392)
Q Consensus 152 ~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~----~~~~~~~~~l~~~m~~~~lp~~L~~ri~~ 212 (392)
....+..++..++..++.++++-.+..+.-+. ++.+-..+++++-.|+..-+++++.|+|+
T Consensus 175 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR~ 239 (347)
T TIGR00328 175 AITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQ 239 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 34445555555555555554444444444333 34444456788888888888888888775
No 90
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=25.67 E-value=40 Score=30.54 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.3
Q ss_pred cceeeeccCCcchhhhhHHhhhhhh
Q 042233 3 GTLLIETMGGPKICGFTIRSLRKHA 27 (392)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (392)
++.+|-+|||+.|.+.+++.-+++.
T Consensus 87 d~ivIAGMGG~lI~~ILee~~~~l~ 111 (226)
T COG2384 87 DVIVIAGMGGTLIREILEEGKEKLK 111 (226)
T ss_pred CEEEEeCCcHHHHHHHHHHhhhhhc
Confidence 5789999999999999999988765
No 91
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=24.76 E-value=2.1e+02 Score=25.92 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=36.0
Q ss_pred cCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEE--
Q 042233 285 EGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQ-- 362 (392)
Q Consensus 285 ~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~-- 362 (392)
.++..+..-||++|++.+....... .|.+|++- + ++ +.+..+++
T Consensus 79 ~d~~ae~~lfVv~Ge~tv~~~G~th--------------------~l~eggya----y---lP-------pgs~~~~~N~ 124 (264)
T COG3257 79 GDEGAETFLFVVSGEITVKAEGKTH--------------------ALREGGYA----Y---LP-------PGSGWTLRNA 124 (264)
T ss_pred CCCcceEEEEEEeeeEEEEEcCeEE--------------------EeccCCeE----E---eC-------CCCcceEeec
Confidence 3445678999999999998743211 68888763 2 11 12334555
Q ss_pred EcceEEEEEecH
Q 042233 363 ALTNVDAFMLMA 374 (392)
Q Consensus 363 A~~~~~l~~L~~ 374 (392)
+.+++++..+.|
T Consensus 125 ~~~~~rfhw~rk 136 (264)
T COG3257 125 QKEDSRFHWIRK 136 (264)
T ss_pred cCCceEEEEEee
Confidence 777788777765
No 92
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=24.70 E-value=1.6e+02 Score=29.07 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhcccccc--cccCCChhhHHHHHHHHHHHHHH
Q 042233 126 QKILHCFIWGLQNLSNLSHN--LQTSGNVEENIFVILVVSSGFLL 168 (392)
Q Consensus 126 ~~Yi~s~Ywa~~t~ttvGyG--di~p~~~~E~~~~i~~~i~g~~~ 168 (392)
..-..+.+.++++++|.|+. |...-+..=.++.++.|++|..-
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~ 274 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCS 274 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCC
Confidence 34566778889999999984 44444555667788888888655
No 93
>COG1422 Predicted membrane protein [Function unknown]
Probab=24.45 E-value=1.8e+02 Score=25.93 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHH-------HHHhcchhHHHhhcc
Q 042233 170 ALLIGNMQRYLKLG-------KEMTLKPREIEEWQP 198 (392)
Q Consensus 170 a~iig~i~~il~~~-------~~~~~~~~~l~~~m~ 198 (392)
|.++|.+.++++.. +++|+.+++.++.++
T Consensus 54 avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~ 89 (201)
T COG1422 54 AVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFR 89 (201)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34444444555444 555666666655554
No 94
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=24.34 E-value=2.5e+02 Score=19.54 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 156 IFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 156 ~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
-|+.+.|++..+++-.+++-+..++..+
T Consensus 17 YFtLi~M~lti~~~~Iv~si~~AILNKL 44 (64)
T PF03579_consen 17 YFTLIFMMLTIGFFFIVTSIMAAILNKL 44 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777787888888888888888766
No 95
>PRK11171 hypothetical protein; Provisional
Probab=23.71 E-value=1.1e+02 Score=28.46 Aligned_cols=34 Identities=12% Similarity=0.032 Sum_probs=22.6
Q ss_pred ceeeeCCCCEEEecCC--CCCeEEEEEeeeEEEEEe
Q 042233 272 KPTFFTEHTHLIREGD--PIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 272 ~~~~~~~ge~I~~~gd--~~~~lyfI~~G~V~v~~~ 305 (392)
....+.||...-.... ..+++++|++|++.+...
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~ 99 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLE 99 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEEC
Confidence 3445677765433322 236899999999999864
No 96
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=22.76 E-value=98 Score=26.89 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=15.4
Q ss_pred CCCeEEEEEeeeEEEEEec
Q 042233 288 PIDEMIFVVQGKLRTYTFK 306 (392)
Q Consensus 288 ~~~~lyfI~~G~V~v~~~~ 306 (392)
..+++.+|++|.+.+...+
T Consensus 127 ~~~E~~~Vl~G~~~~~~~~ 145 (185)
T PRK09943 127 QGEEIGTVLEGEIVLTING 145 (185)
T ss_pred CCcEEEEEEEeEEEEEECC
Confidence 3468999999999998743
No 97
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=22.64 E-value=3.6e+02 Score=23.44 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=22.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 042233 149 SGNVEENIFVILVVSSGFLLFALLIGNM 176 (392)
Q Consensus 149 p~~~~E~~~~i~~~i~g~~~~a~iig~i 176 (392)
|.=-.+-++++.++.+++...+|++|-.
T Consensus 70 ~I~GlDP~~~~g~~t~a~g~lG~L~GP~ 97 (173)
T PF08566_consen 70 QIMGLDPFMVYGLATLACGALGWLVGPS 97 (173)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHhcch
Confidence 3334577888999999999999988853
No 98
>cd07070 NR_LBD_SF-1 The ligand binding domain of nuclear receptor steroidogenic factor 1, a member of nuclear receptor superfamily. The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=22.45 E-value=3.1e+02 Score=24.96 Aligned_cols=62 Identities=8% Similarity=0.040 Sum_probs=37.8
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCcHHHHHhhCcHHHHHHHHHHHHHHHhhcccccccCcHHHHHHHh
Q 042233 203 SKNLQQKVKKYKSYIRRKTDYIDVQNLLNNLPNELRRELKRELCWNLLKKVQGFRKLNEVTLDALC 268 (392)
Q Consensus 203 p~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~ 268 (392)
.+.++.|+..+.+..-. .+.++.+.+..+-.-..+++..- -++.+++|.|++++.+....|.
T Consensus 15 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~a~~~L~~~--VeWaK~lP~F~~L~~~DQi~LL 76 (237)
T cd07070 15 EDQVRARILGCLQEPQK--SRPDQPAPFGLLCRMADQTFISI--VDWARRCMVFKELEVADQMTLL 76 (237)
T ss_pred HHHHHHHHHHHHhhhhh--ccCCcccHHHHHHHHHHHHHHHH--HHHHHhCCChhhCCHHHHHHHH
Confidence 35577787777543321 22355556666555555555443 4889999999998865444443
No 99
>PHA03029 hypothetical protein; Provisional
Probab=22.28 E-value=3.2e+02 Score=20.05 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=19.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 151 NVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 151 ~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
++.|.+|-++..++=.++.--++|-+-..+-+.
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi 34 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSI 34 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777666665555555555555554443
No 100
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.13 E-value=1.1e+02 Score=29.11 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=24.2
Q ss_pred eeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCcc
Q 042233 274 TFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQS 310 (392)
Q Consensus 274 ~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~ 310 (392)
+...|||+-=.---....+.||++|+-....-++.+.
T Consensus 97 QlilPGEvApsHrHsqsAlRFvveG~Ga~T~VdGer~ 133 (351)
T COG3435 97 QLILPGEVAPSHRHNQSALRFVVEGKGAYTVVDGERT 133 (351)
T ss_pred heecCcccCCcccccccceEEEEeccceeEeecCcee
Confidence 4456666554433444579999999987776666553
No 101
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.48 E-value=2.9e+02 Score=19.33 Aligned_cols=26 Identities=12% Similarity=-0.013 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 158 VILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 158 ~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
...+.+++++..|.++|.+.......
T Consensus 19 pl~l~il~~f~~G~llg~l~~~~~~~ 44 (68)
T PF06305_consen 19 PLGLLILIAFLLGALLGWLLSLPSRL 44 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666555443
No 102
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.25 E-value=4e+02 Score=26.46 Aligned_cols=67 Identities=6% Similarity=0.043 Sum_probs=40.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcchhHHHhhcccccCcHHHHHHHHHHHH
Q 042233 149 SGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG----KEMTLKPREIEEWQPFQKLSKNLQQKVKKYKS 215 (392)
Q Consensus 149 p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~----~~~~~~~~~l~~~m~~~~lp~~L~~ri~~y~~ 215 (392)
|......+..++..++..++.++++-.+..++-+. ++.+-..+++++-.|+..-+++++.|+|+--+
T Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~Rq~~r 249 (386)
T PRK12468 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQQR 249 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 33333344444444444444444444444444333 44455557899999999999999999886443
No 103
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.98 E-value=3.1e+02 Score=26.89 Aligned_cols=61 Identities=8% Similarity=0.132 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcchhHHHhhcccccCcHHHHHHHHH
Q 042233 152 VEENIFVILVVSSGFLLFALLIGNMQRYLKLG----KEMTLKPREIEEWQPFQKLSKNLQQKVKK 212 (392)
Q Consensus 152 ~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~----~~~~~~~~~l~~~m~~~~lp~~L~~ri~~ 212 (392)
....+...+..+++.++-++++-.+..+.-+. ++.+-..+++++-.|+..-+++++.|+|+
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq 248 (358)
T PRK13109 184 LPELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRS 248 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 33444455555555555555444444444333 34444556788888888888888888775
No 104
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=20.87 E-value=1.9e+02 Score=23.39 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=22.8
Q ss_pred CeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCee
Q 042233 290 DEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFY 337 (392)
Q Consensus 290 ~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~F 337 (392)
++..-|++|.+++...++... .+++||.|
T Consensus 64 ~E~chil~G~v~~T~d~Ge~v-------------------~~~aGD~~ 92 (116)
T COG3450 64 DEFCHILEGRVEVTPDGGEPV-------------------EVRAGDSF 92 (116)
T ss_pred ceEEEEEeeEEEEECCCCeEE-------------------EEcCCCEE
Confidence 678889999999988654322 78999976
No 105
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=20.85 E-value=5.9e+02 Score=25.96 Aligned_cols=34 Identities=12% Similarity=0.408 Sum_probs=22.6
Q ss_pred chHHHHHHH-HHHHHHhhcccccccccCCChhhHHHHHHHHH
Q 042233 123 NFLQKILHC-FIWGLQNLSNLSHNLQTSGNVEENIFVILVVS 163 (392)
Q Consensus 123 s~~~~Yi~s-~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i 163 (392)
+.|...+.| ++|++.. |++......|.|..+...
T Consensus 139 elw~~~vvS~lFW~fan-------di~t~~qakRfy~l~~~g 173 (472)
T TIGR00769 139 ELWGSVVLSLLFWGFAN-------QITTIDEAKRFYALFGLG 173 (472)
T ss_pred HHHHHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHH
Confidence 345566666 8887753 666677778887776653
No 106
>PF09550 DUF2376: Conserved hypothetical phage protein (DUF2376); InterPro: IPR019056 Gene transfer agents belong to a group of unusual genetic exchange elements []. GTAs are unusual in the sense they have the structure of a small tailed phage, which do not possess typical phage traits such as host cell lysis and infectious transmission of the GTA genes. In the Rhodobacter capsulatus GTA the GTA particles contain random 4.5 kb DNA fragments of the R.capsulatus genome. These DNA fragments can be transmitted to other cells where allelic conversion may occur via homologous recombination. The genes coding for the GTA particles are of two distinct types: the first is a cluster of genes reminiscent of a cryptyic prophage, where a number of the genes have similarity to known phage structural genes; the second type consists of two genes coding for a cellular two-component signal transduction system, which regulates the transcription of the GTA structural gene cluster in a growth phase dependent manner []. This entry is represented by ORFg10.1 (RCAP_rcc01693) of the Gene Transfer Agent (GTA) of Rhodobacter capsulatus [see Fig.1, in ]. The function is not known.
Probab=20.75 E-value=63 Score=21.13 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=15.1
Q ss_pred EEecHHHHHHHHHHcHH
Q 042233 370 FMLMADDLKIVFNDMMN 386 (392)
Q Consensus 370 ~~L~~~~f~~ll~~~P~ 386 (392)
--++|+.+.++++.||+
T Consensus 27 ~pl~R~~L~~Lm~~~PD 43 (43)
T PF09550_consen 27 APLDRAELDALMRRFPD 43 (43)
T ss_pred CCCCHHHHHHHHHHCcC
Confidence 56889999999999996
No 107
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=20.24 E-value=3e+02 Score=28.15 Aligned_cols=102 Identities=18% Similarity=0.240 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHHHHHhhccc-ccccCcHHH-HHHHhhhcceeeeCCCCEEEecCCCCCeEEEEE--eeeEEEEEecCCc
Q 042233 234 PNELRRELKRELCWNLLKKVQ-GFRKLNEVT-LDALCDCVKPTFFTEHTHLIREGDPIDEMIFVV--QGKLRTYTFKDIQ 309 (392)
Q Consensus 234 p~~Lr~ei~~~~~~~~l~~i~-~F~~~s~~~-l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~--~G~V~v~~~~~~~ 309 (392)
+...-.+|...+..++--+.| -|..++++. +..|..++..=+ .-=-.|-.+||++-.=|.+. +|.+.+..-.+.+
T Consensus 334 ~~~~l~ei~~Fl~~~L~~~~~~~~~~~~~~~~~~yL~~kLnRPi-RVCGMVkNeGEPGGGPFwv~~~dG~~SLQIvEssQ 412 (513)
T PF14134_consen 334 SEEELEEIKDFLEEELNIKLPDDFKKLSDEEKIEYLKEKLNRPI-RVCGMVKNEGEPGGGPFWVKNEDGTVSLQIVESSQ 412 (513)
T ss_pred CHHHHHHHHHHHHHhhCCCCcHHHHhhCHHHHHHHHHHHcCCCc-eeeeccccCCCCCCCCeEEECCCCCEeeeeehhhh
Confidence 333444555555444544454 666666543 333333332211 11123456899999888887 5887776543322
Q ss_pred cCcccCCcccccCccccccccccCCCeechhhhhhhh
Q 042233 310 SGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWAL 346 (392)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l 346 (392)
. +.+++.....+..+.+|...-+..++
T Consensus 413 I----------d~~~~~q~~if~~~THFNPVDLVCgv 439 (513)
T PF14134_consen 413 I----------DMSNPEQKEIFKNSTHFNPVDLVCGV 439 (513)
T ss_pred c----------CCCCHHHHHHHHcCCCCCccceEeec
Confidence 1 44556677788889998888765443
Done!