Query 042233
Match_columns 392
No_of_seqs 325 out of 2593
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 06:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ptm_A Hyperpolarization-activ 100.0 4.5E-32 1.5E-36 241.6 20.2 178 184-389 8-185 (198)
2 3ukn_A Novel protein similar t 100.0 3.8E-33 1.3E-37 251.2 11.9 184 178-389 2-190 (212)
3 3bpz_A Potassium/sodium hyperp 100.0 9.2E-32 3.1E-36 240.5 20.0 177 184-389 9-185 (202)
4 3beh_A MLL3241 protein; transm 100.0 6.4E-31 2.2E-35 255.4 12.7 182 125-390 159-340 (355)
5 4f8a_A Potassium voltage-gated 99.8 7.4E-21 2.5E-25 162.3 13.7 138 226-389 5-142 (160)
6 3ocp_A PRKG1 protein; serine/t 99.8 7.4E-19 2.5E-23 146.6 10.7 130 232-389 7-136 (139)
7 3idb_B CAMP-dependent protein 99.7 1.3E-17 4.3E-22 142.8 13.8 125 241-389 31-155 (161)
8 3mdp_A Cyclic nucleotide-bindi 99.7 9.4E-18 3.2E-22 139.8 12.2 119 248-389 6-127 (142)
9 1wgp_A Probable cyclic nucleot 99.7 1E-17 3.5E-22 139.1 11.6 128 248-390 6-135 (137)
10 2pqq_A Putative transcriptiona 99.7 3.8E-17 1.3E-21 137.2 11.9 120 247-389 4-123 (149)
11 3gyd_A CNMP-BD protein, cyclic 99.7 5.7E-17 1.9E-21 142.6 13.5 140 226-388 13-156 (187)
12 2z69_A DNR protein; beta barre 99.7 8.1E-17 2.8E-21 136.0 13.0 121 247-389 11-131 (154)
13 3pna_A CAMP-dependent protein 99.7 1.8E-16 6.3E-21 134.5 13.5 118 244-389 34-151 (154)
14 1vp6_A CNBD, cyclic-nucleotide 99.7 2.8E-16 9.5E-21 130.4 13.7 113 247-389 10-122 (138)
15 3shr_A CGMP-dependent protein 99.7 1.2E-16 4.2E-21 150.5 11.8 132 228-387 19-150 (299)
16 4ev0_A Transcription regulator 99.7 4.2E-16 1.4E-20 139.4 14.2 117 250-389 1-117 (216)
17 3dn7_A Cyclic nucleotide bindi 99.7 4E-16 1.4E-20 137.4 12.4 120 247-389 6-126 (194)
18 3fx3_A Cyclic nucleotide-bindi 99.7 7.1E-16 2.4E-20 140.1 13.8 122 245-389 8-129 (237)
19 3vou_A ION transport 2 domain 99.7 5.7E-16 1.9E-20 131.1 11.9 82 128-209 53-148 (148)
20 3e97_A Transcriptional regulat 99.7 5.2E-16 1.8E-20 140.4 12.3 120 247-389 5-124 (231)
21 2d93_A RAP guanine nucleotide 99.7 3.3E-17 1.1E-21 135.7 3.9 117 244-388 12-130 (134)
22 3dv8_A Transcriptional regulat 99.6 1.5E-15 5.3E-20 136.1 13.6 119 248-389 3-123 (220)
23 3d0s_A Transcriptional regulat 99.6 3.9E-16 1.3E-20 140.9 9.6 120 247-389 5-124 (227)
24 2qcs_B CAMP-dependent protein 99.6 3.2E-15 1.1E-19 140.0 15.6 125 244-390 153-277 (291)
25 4h33_A LMO2059 protein; bilaye 99.6 4.6E-16 1.6E-20 129.7 8.4 87 128-214 44-134 (137)
26 3of1_A CAMP-dependent protein 99.6 1.7E-15 6E-20 137.9 13.0 119 245-390 122-240 (246)
27 1zyb_A Transcription regulator 99.6 1.5E-15 5.3E-20 137.8 12.6 121 247-389 17-139 (232)
28 4ava_A Lysine acetyltransferas 99.6 2.2E-15 7.5E-20 144.2 14.1 118 247-389 12-129 (333)
29 3iwz_A CAP-like, catabolite ac 99.6 2.9E-15 1E-19 135.2 13.5 121 247-389 10-135 (230)
30 3dkw_A DNR protein; CRP-FNR, H 99.6 7.2E-16 2.5E-20 139.0 9.2 121 247-389 8-128 (227)
31 3shr_A CGMP-dependent protein 99.6 2.1E-15 7.3E-20 142.0 11.9 124 244-389 153-276 (299)
32 2gau_A Transcriptional regulat 99.6 3.5E-15 1.2E-19 135.1 12.8 115 252-389 14-128 (232)
33 3of1_A CAMP-dependent protein 99.6 3.6E-15 1.2E-19 135.8 11.6 113 246-386 5-117 (246)
34 3tnp_B CAMP-dependent protein 99.6 9.3E-15 3.2E-19 144.4 14.5 123 242-388 139-261 (416)
35 2qcs_B CAMP-dependent protein 99.6 1.5E-14 5.1E-19 135.5 14.3 117 244-388 35-151 (291)
36 4din_B CAMP-dependent protein 99.6 4.9E-15 1.7E-19 144.8 10.3 125 243-389 243-367 (381)
37 3ryp_A Catabolite gene activat 99.6 1.7E-14 5.9E-19 128.2 12.5 114 254-389 2-115 (210)
38 1o7f_A CAMP-dependent RAP1 gua 99.6 1.6E-14 5.6E-19 144.6 13.7 135 233-389 27-161 (469)
39 3eff_K Voltage-gated potassium 99.6 1.7E-14 5.9E-19 120.6 11.0 57 127-183 40-96 (139)
40 2oz6_A Virulence factor regula 99.5 5.2E-14 1.8E-18 124.8 13.4 109 259-389 1-112 (207)
41 3tnp_B CAMP-dependent protein 99.5 3.6E-14 1.2E-18 140.2 12.8 128 246-390 265-392 (416)
42 4din_B CAMP-dependent protein 99.5 1.8E-14 6.1E-19 140.8 9.9 117 244-388 126-242 (381)
43 4f7z_A RAP guanine nucleotide 99.5 6.3E-14 2.2E-18 153.0 13.5 129 238-388 32-160 (999)
44 3kcc_A Catabolite gene activat 99.5 9.5E-14 3.2E-18 128.3 12.3 111 257-389 55-165 (260)
45 1o7f_A CAMP-dependent RAP1 gua 99.5 7.9E-14 2.7E-18 139.6 12.4 119 244-389 333-453 (469)
46 2fmy_A COOA, carbon monoxide o 99.5 4.1E-14 1.4E-18 127.0 8.7 111 248-389 4-114 (220)
47 1o5l_A Transcriptional regulat 99.5 6.8E-14 2.3E-18 125.1 10.0 114 253-388 4-117 (213)
48 1ft9_A Carbon monoxide oxidati 99.5 3.2E-14 1.1E-18 128.0 6.9 110 249-389 1-110 (222)
49 1orq_C Potassium channel; volt 99.5 1.9E-13 6.6E-18 123.5 11.3 56 127-182 165-220 (223)
50 2a9h_A Voltage-gated potassium 99.4 4E-13 1.4E-17 113.9 10.1 58 126-183 83-140 (155)
51 3e6c_C CPRK, cyclic nucleotide 99.4 1.9E-13 6.6E-18 125.2 8.5 114 250-389 11-124 (250)
52 2ih3_C Voltage-gated potassium 99.4 9.7E-13 3.3E-17 107.3 10.8 57 127-183 61-117 (122)
53 3cf6_E RAP guanine nucleotide 99.4 6.1E-13 2.1E-17 139.1 10.8 133 228-388 13-147 (694)
54 2k1e_A Water soluble analogue 99.4 1.3E-13 4.4E-18 109.1 3.7 57 127-183 40-96 (103)
55 3ouf_A Potassium channel prote 99.4 3.8E-12 1.3E-16 99.3 11.2 56 128-183 33-88 (97)
56 3la7_A Global nitrogen regulat 99.4 3.2E-12 1.1E-16 116.6 12.2 107 261-389 30-140 (243)
57 2q67_A Potassium channel prote 99.4 3.5E-12 1.2E-16 102.6 10.4 56 128-183 50-105 (114)
58 2bgc_A PRFA; bacterial infecti 99.3 6E-12 2.1E-16 114.3 12.8 110 257-389 2-115 (238)
59 4f7z_A RAP guanine nucleotide 99.3 5.3E-12 1.8E-16 137.8 14.6 116 244-386 333-450 (999)
60 3ldc_A Calcium-gated potassium 99.3 1.4E-11 4.9E-16 93.0 11.5 53 128-180 29-81 (82)
61 1xl4_A Inward rectifier potass 99.2 1.7E-11 5.7E-16 115.1 9.5 117 3-181 19-136 (301)
62 2r9r_B Paddle chimera voltage 99.2 3.2E-11 1.1E-15 121.8 11.0 58 126-183 374-431 (514)
63 1p7b_A Integral membrane chann 99.2 2E-11 6.9E-16 115.8 5.9 56 128-183 97-152 (333)
64 3b02_A Transcriptional regulat 99.1 9.5E-11 3.2E-15 103.0 8.5 81 274-378 2-82 (195)
65 3pjs_K KCSA, voltage-gated pot 99.1 3.1E-12 1E-16 110.1 -2.9 57 127-183 67-123 (166)
66 3um7_A Potassium channel subfa 99.0 4.6E-10 1.6E-14 105.0 9.1 57 127-183 115-171 (309)
67 2qks_A KIR3.1-prokaryotic KIR 99.0 1.2E-09 4.1E-14 103.3 10.3 57 127-183 78-134 (321)
68 2zcw_A TTHA1359, transcription 99.0 4.8E-10 1.7E-14 98.9 6.7 87 267-378 1-89 (202)
69 3sya_A G protein-activated inw 99.0 7.7E-09 2.6E-13 97.9 13.8 56 128-183 92-149 (340)
70 4gx0_A TRKA domain protein; me 98.9 3.7E-09 1.3E-13 108.3 11.8 55 128-182 52-107 (565)
71 3spc_A Inward-rectifier K+ cha 98.8 3.6E-08 1.2E-12 93.5 13.0 132 4-182 16-151 (343)
72 3ukm_A Potassium channel subfa 98.8 8.7E-09 3E-13 95.0 8.2 57 127-183 93-149 (280)
73 3um7_A Potassium channel subfa 98.8 2.7E-09 9.2E-14 99.9 4.1 56 128-183 225-286 (309)
74 3ukm_A Potassium channel subfa 98.7 1.4E-08 4.8E-13 93.6 6.6 56 128-183 202-264 (280)
75 1lnq_A MTHK channels, potassiu 98.5 8.3E-09 2.8E-13 98.7 -2.2 56 128-183 46-101 (336)
76 3rvy_A ION transport protein; 97.6 0.00011 3.8E-09 68.2 7.5 59 125-183 178-242 (285)
77 4dxw_A Navrh, ION transport pr 84.5 6.3 0.00021 34.3 10.1 21 127-147 165-185 (229)
78 3fjs_A Uncharacterized protein 79.4 6.5 0.00022 30.1 7.3 67 271-371 38-104 (114)
79 3rns_A Cupin 2 conserved barre 77.3 8.2 0.00028 33.7 8.2 68 271-372 39-106 (227)
80 3kg2_A Glutamate receptor 2; I 74.6 3.6 0.00012 43.1 5.9 69 127-197 563-631 (823)
81 2ozj_A Cupin 2, conserved barr 72.5 8.6 0.00029 29.1 6.3 30 276-305 45-74 (114)
82 1yhf_A Hypothetical protein SP 72.5 13 0.00045 27.9 7.4 68 271-372 42-109 (115)
83 2pfw_A Cupin 2, conserved barr 67.3 18 0.00062 27.1 7.2 68 271-372 36-103 (116)
84 4e2g_A Cupin 2 conserved barre 66.5 19 0.00063 27.6 7.2 79 271-383 43-125 (126)
85 3lwc_A Uncharacterized protein 65.2 8.9 0.0003 29.8 4.9 46 273-339 44-89 (119)
86 2gu9_A Tetracenomycin polyketi 59.4 11 0.00036 28.1 4.4 35 271-305 23-60 (113)
87 1v70_A Probable antibiotics sy 58.8 12 0.00043 27.1 4.6 34 272-305 31-65 (105)
88 1o5u_A Novel thermotoga mariti 58.2 28 0.00095 26.0 6.5 48 271-339 33-80 (101)
89 3h8u_A Uncharacterized conserv 54.6 14 0.00046 28.4 4.3 34 271-304 41-75 (125)
90 3es4_A Uncharacterized protein 51.8 9.5 0.00033 29.7 2.9 44 277-340 50-93 (116)
91 3rns_A Cupin 2 conserved barre 50.6 32 0.0011 29.7 6.6 67 271-371 155-222 (227)
92 3d82_A Cupin 2, conserved barr 50.4 26 0.00091 25.3 5.2 50 290-373 51-100 (102)
93 2opk_A Hypothetical protein; p 46.9 15 0.00051 27.9 3.3 36 287-340 51-86 (112)
94 3d0j_A Uncharacterized protein 46.0 36 0.0012 27.3 5.4 23 284-306 45-67 (140)
95 2q30_A Uncharacterized protein 45.1 85 0.0029 22.7 7.5 33 273-305 37-71 (110)
96 4b29_A Dimethylsulfoniopropion 44.6 30 0.001 30.0 5.1 44 276-338 139-182 (217)
97 2f4p_A Hypothetical protein TM 43.7 32 0.0011 27.4 5.0 34 273-306 52-85 (147)
98 2i45_A Hypothetical protein; n 43.6 18 0.00063 26.8 3.3 56 289-377 48-103 (107)
99 3bcw_A Uncharacterized protein 43.1 15 0.0005 28.8 2.8 45 276-340 56-100 (123)
100 3ibm_A Cupin 2, conserved barr 43.0 21 0.00073 29.3 3.9 33 273-305 60-92 (167)
101 3es1_A Cupin 2, conserved barr 42.6 17 0.00058 30.4 3.2 47 272-337 82-128 (172)
102 1vj2_A Novel manganese-contain 42.3 20 0.00068 27.7 3.5 32 274-305 53-84 (126)
103 1yfu_A 3-hydroxyanthranilate-3 41.8 26 0.0009 29.2 4.2 36 288-339 54-89 (174)
104 1o4t_A Putative oxalate decarb 40.8 22 0.00077 27.7 3.6 33 273-305 61-94 (133)
105 2fqp_A Hypothetical protein BP 39.2 12 0.0004 27.5 1.6 50 272-339 21-71 (97)
106 3lag_A Uncharacterized protein 39.1 9.4 0.00032 28.5 1.0 37 271-307 19-56 (98)
107 2vpv_A Protein MIF2, MIF2P; nu 38.5 16 0.00053 30.4 2.3 32 288-339 109-140 (166)
108 4i4a_A Similar to unknown prot 37.8 1.2E+02 0.004 22.8 7.5 79 274-386 39-121 (128)
109 1y9q_A Transcriptional regulat 37.4 36 0.0012 28.3 4.6 44 274-337 109-154 (192)
110 1dgw_A Canavalin; duplicated s 37.4 32 0.0011 28.6 4.2 35 271-305 43-77 (178)
111 3kgz_A Cupin 2 conserved barre 36.9 20 0.00067 29.3 2.7 31 275-305 50-80 (156)
112 2oa2_A BH2720 protein; 1017534 36.5 48 0.0016 26.2 5.0 34 273-306 47-81 (148)
113 3jzv_A Uncharacterized protein 36.5 19 0.00066 29.7 2.6 31 275-305 59-89 (166)
114 2pyt_A Ethanolamine utilizatio 35.5 23 0.00078 28.0 2.8 45 274-340 62-106 (133)
115 3i7d_A Sugar phosphate isomera 35.5 22 0.00075 29.1 2.8 34 273-306 47-82 (163)
116 3bu7_A Gentisate 1,2-dioxygena 35.0 20 0.00067 34.3 2.7 36 272-307 126-161 (394)
117 1zvf_A 3-hydroxyanthranilate 3 34.1 38 0.0013 28.3 3.9 66 262-339 12-92 (176)
118 4e2q_A Ureidoglycine aminohydr 33.4 56 0.0019 29.3 5.3 69 273-374 74-142 (266)
119 1sfn_A Conserved hypothetical 33.0 34 0.0012 30.0 3.9 51 270-340 166-217 (246)
120 2bnm_A Epoxidase; oxidoreducta 32.9 28 0.00096 29.1 3.1 48 275-338 123-173 (198)
121 1sfn_A Conserved hypothetical 32.5 47 0.0016 29.1 4.7 45 273-339 54-98 (246)
122 3h7j_A Bacilysin biosynthesis 32.5 41 0.0014 29.3 4.3 35 271-305 36-70 (243)
123 3mhs_B Protein SUS1; multi-pro 32.4 23 0.00079 26.5 2.2 56 190-245 22-85 (96)
124 2b8m_A Hypothetical protein MJ 31.3 45 0.0015 25.0 3.8 31 275-305 33-63 (117)
125 2xp1_A SPT6; transcription, IW 31.2 77 0.0026 26.5 5.5 40 251-296 12-51 (178)
126 4axo_A EUTQ, ethanolamine util 31.2 29 0.001 28.2 2.8 31 288-338 83-113 (151)
127 3cew_A Uncharacterized cupin p 30.8 31 0.0011 26.3 2.8 33 273-305 30-64 (125)
128 2q1z_B Anti-sigma factor CHRR, 30.3 99 0.0034 26.0 6.2 32 270-301 126-157 (195)
129 1lr5_A Auxin binding protein 1 29.5 31 0.001 27.9 2.7 34 273-306 45-78 (163)
130 3l2h_A Putative sugar phosphat 29.3 36 0.0012 27.4 3.1 34 272-305 49-84 (162)
131 1sq4_A GLXB, glyoxylate-induce 27.3 50 0.0017 29.6 4.0 51 269-339 191-242 (278)
132 1sef_A Conserved hypothetical 26.6 50 0.0017 29.4 3.8 48 271-338 184-232 (274)
133 3nw4_A Gentisate 1,2-dioxygena 26.1 42 0.0014 31.7 3.2 37 271-307 105-141 (368)
134 3bu7_A Gentisate 1,2-dioxygena 25.6 36 0.0012 32.5 2.7 76 272-381 297-375 (394)
135 3h7j_A Bacilysin biosynthesis 25.5 48 0.0016 28.9 3.4 48 273-340 149-197 (243)
136 3myx_A Uncharacterized protein 25.1 57 0.002 28.7 3.8 33 289-340 186-218 (238)
137 1fi2_A Oxalate oxidase, germin 24.9 1.1E+02 0.0038 25.6 5.6 36 271-306 74-110 (201)
138 2kwv_A RAD30 homolog B, DNA po 24.6 20 0.00069 22.7 0.5 17 227-243 18-34 (48)
139 2o8q_A Hypothetical protein; c 24.5 49 0.0017 25.4 3.0 18 289-306 64-81 (134)
140 1y3t_A Hypothetical protein YX 23.8 74 0.0025 28.8 4.6 33 272-304 49-82 (337)
141 2d40_A Z3393, putative gentisa 22.9 55 0.0019 30.5 3.5 31 272-302 103-133 (354)
142 2qnk_A 3-hydroxyanthranilate 3 22.6 72 0.0025 28.8 3.9 32 287-337 49-83 (286)
143 3ht1_A REMF protein; cupin fol 22.2 33 0.0011 26.7 1.5 15 289-303 59-73 (145)
144 2o1q_A Putative acetyl/propion 21.9 79 0.0027 25.1 3.8 32 271-302 46-77 (145)
145 1rc6_A Hypothetical protein YL 21.6 58 0.002 28.7 3.2 48 271-338 181-229 (261)
146 1j58_A YVRK protein; cupin, de 21.4 1E+02 0.0035 28.7 5.1 35 271-305 259-294 (385)
147 1sq4_A GLXB, glyoxylate-induce 21.1 49 0.0017 29.7 2.6 33 273-305 72-106 (278)
148 2do1_A Nuclear protein HCC-1; 21.0 56 0.0019 21.6 2.2 29 188-216 13-46 (55)
149 2ea7_A 7S globulin-1; beta bar 21.0 79 0.0027 30.4 4.2 36 270-305 62-97 (434)
150 3nw4_A Gentisate 1,2-dioxygena 20.8 1.2E+02 0.004 28.6 5.2 75 273-381 283-357 (368)
151 2d5f_A Glycinin A3B4 subunit; 20.8 1.4E+02 0.005 29.1 6.1 61 264-338 362-423 (493)
152 1uij_A Beta subunit of beta co 20.5 80 0.0027 30.2 4.1 36 270-305 50-85 (416)
153 2rnn_A E3 SUMO-protein ligase 20.4 62 0.0021 24.9 2.6 32 187-218 39-75 (114)
154 1x82_A Glucose-6-phosphate iso 20.3 92 0.0032 25.9 4.1 33 290-337 97-129 (190)
155 4dhx_B Enhancer of yellow 2 tr 20.2 65 0.0022 24.2 2.7 56 190-245 26-91 (101)
No 1
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=100.00 E-value=4.5e-32 Score=241.63 Aligned_cols=178 Identities=19% Similarity=0.326 Sum_probs=165.3
Q ss_pred HHHhcchhHHHhhcccccCcHHHHHHHHHHHHHHHhhcCCCcHHHHHhhCcHHHHHHHHHHHHHHHhhcccccccCcHHH
Q 042233 184 KEMTLKPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQNLLNNLPNELRRELKRELCWNLLKKVQGFRKLNEVT 263 (392)
Q Consensus 184 ~~~~~~~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~ 263 (392)
.+|+++++.+++||+++++|++||.||++||+|.|+. ++.+++++++.||++||.++..+++.++++++|+|+++|+++
T Consensus 8 ~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~ 86 (198)
T 2ptm_A 8 RQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNF 86 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCCHHH
Confidence 7899999999999999999999999999999999974 678899999999999999999999999999999999999999
Q ss_pred HHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhh
Q 042233 264 LDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELID 343 (392)
Q Consensus 264 l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll 343 (392)
+..++..++++.|.|||+|+++||+++.+|||.+|.|+++..++ .++..+++|++||+.+++
T Consensus 87 l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g------------------~~~~~l~~G~~fGe~~~~ 148 (198)
T 2ptm_A 87 VTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDG------------------VIATSLSDGSYFGEICLL 148 (198)
T ss_dssp HHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTS------------------CEEEEECTTCEESCHHHH
T ss_pred HHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCC------------------eEEEEecCCCEechHHHc
Confidence 99999999999999999999999999999999999999987332 256689999999999885
Q ss_pred hhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 344 WALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 344 ~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
. ..+++++++|.++|+++.|++++|.++++++|++..
T Consensus 149 ~---------~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~ 185 (198)
T 2ptm_A 149 T---------RERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRK 185 (198)
T ss_dssp H---------SSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred C---------CCccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHH
Confidence 4 234778999999999999999999999999999864
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=100.00 E-value=3.8e-33 Score=251.24 Aligned_cols=184 Identities=22% Similarity=0.329 Sum_probs=164.8
Q ss_pred HHHHHH----HHHhcchhHHHhhcccccCcHHHHHHHHHHHHHHHhhcCCCcHHHHHhhCcHHHHHHHHHHHHHHHhhcc
Q 042233 178 RYLKLG----KEMTLKPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQNLLNNLPNELRRELKRELCWNLLKKV 253 (392)
Q Consensus 178 ~il~~~----~~~~~~~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i 253 (392)
+|++++ .+|+++|+.+++||+++++|++||.||++||+|.|+.+++.+++++++.||++||.++..+++..++ ++
T Consensus 2 ~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~ 80 (212)
T 3ukn_A 2 AMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QL 80 (212)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hc
Confidence 455555 7899999999999999999999999999999999998888999999999999999999999988877 89
Q ss_pred cccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccC
Q 042233 254 QGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQD 333 (392)
Q Consensus 254 ~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 333 (392)
|+|++++++++..++..++++.|.|||+|+++||+++.+|||.+|.|+++..+ .++..+++
T Consensus 81 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------------------~~~~~l~~ 141 (212)
T 3ukn_A 81 PLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDN-------------------TVLAILGK 141 (212)
T ss_dssp GGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSS-------------------CEEEEECT
T ss_pred HHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECC-------------------eEEEEecC
Confidence 99999999999999999999999999999999999999999999999998621 35678999
Q ss_pred CCeechhhhhhhhccCCCCCCC-CcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 334 GDFYGEELIDWALRDRFSFDIP-KSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 334 G~~FGe~~ll~~l~~~~~~~~~-~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
|++||+.+++. +.+ +++++++|.++|+++.|++++|.++++++|++..
T Consensus 142 G~~fGe~~~~~--------~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~ 190 (212)
T 3ukn_A 142 GDLIGSDSLTK--------EQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQ 190 (212)
T ss_dssp TCEEECSCCSS--------SSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred CCCcCcHHhcc--------CCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHH
Confidence 99999998742 121 5789999999999999999999999999999865
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=100.00 E-value=9.2e-32 Score=240.45 Aligned_cols=177 Identities=21% Similarity=0.329 Sum_probs=163.3
Q ss_pred HHHhcchhHHHhhcccccCcHHHHHHHHHHHHHHHhhcCCCcHHHHHhhCcHHHHHHHHHHHHHHHhhcccccccCcHHH
Q 042233 184 KEMTLKPREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQNLLNNLPNELRRELKRELCWNLLKKVQGFRKLNEVT 263 (392)
Q Consensus 184 ~~~~~~~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~ 263 (392)
.+|+++++.+++||+.++||++||.||++||+|.|+. +..+++++++.||+.||.++..+++.++++++|+|+++|+++
T Consensus 9 ~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~~~~ 87 (202)
T 3bpz_A 9 RQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFANADPNF 87 (202)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCCHHH
Confidence 7899999999999999999999999999999999974 688999999999999999999999999999999999999999
Q ss_pred HHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhh
Q 042233 264 LDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELID 343 (392)
Q Consensus 264 l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll 343 (392)
+..++..++++.|.||++|+++||+++.+|||.+|.|+++..++ + ...+++|++||+.+++
T Consensus 88 l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g-~------------------~~~l~~G~~fGe~~~~ 148 (202)
T 3bpz_A 88 VTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN-K------------------EMKLSDGSYFGEICLL 148 (202)
T ss_dssp HHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTS-C------------------CEEEETTCEECHHHHH
T ss_pred HHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCC-e------------------EEEEcCCCEeccHHHh
Confidence 99999999999999999999999999999999999999986432 1 1268999999999885
Q ss_pred hhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 344 WALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 344 ~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
. ..+++++++|.++|+++.|++++|.++++++|++..
T Consensus 149 ~---------~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~ 185 (202)
T 3bpz_A 149 T---------RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRR 185 (202)
T ss_dssp H---------CSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHH
T ss_pred c---------CCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHH
Confidence 4 134678999999999999999999999999998764
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.97 E-value=6.4e-31 Score=255.41 Aligned_cols=182 Identities=21% Similarity=0.300 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhhcccccCcH
Q 042233 125 LQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLGKEMTLKPREIEEWQPFQKLSK 204 (392)
Q Consensus 125 ~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~~~~~~~~~~l~~~m~~~~lp~ 204 (392)
+..|..|+||+++||||+||||+.|.|..++++++++|++|.+++++.+|.+++.+.+..+
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~------------------- 219 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR------------------- 219 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 4458999999999999999999999999999999999999999999999999876643200
Q ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHhhCcHHHHHHHHHHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEe
Q 042233 205 NLQQKVKKYKSYIRRKTDYIDVQNLLNNLPNELRRELKRELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIR 284 (392)
Q Consensus 205 ~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~ 284 (392)
+ +++. ...+.++++|+|++++++++++++..++++.|+|||+|++
T Consensus 220 ---~--~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~ 264 (355)
T 3beh_A 220 ---R--GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICR 264 (355)
T ss_dssp ---H--HHHH------------------------------HHHC------------------------------------
T ss_pred ---H--Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEe
Confidence 0 0000 0246788899999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEc
Q 042233 285 EGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQAL 364 (392)
Q Consensus 285 ~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~ 364 (392)
+||+++++|||.+|.|+++..+ . ..+++|++|||.+++. ..+++++++|.
T Consensus 265 ~G~~~~~ly~I~~G~v~v~~~~--~-------------------~~l~~G~~fGe~~~l~---------~~~~~~~~~A~ 314 (355)
T 3beh_A 265 IGEPGDRMFFVVEGSVSVATPN--P-------------------VELGPGAFFGEMALIS---------GEPRSATVSAA 314 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcCceEEEEEeeEEEEEECC--e-------------------eEECCCCEEeehHHhC---------CCCcceEEEEC
Confidence 9999999999999999998753 1 2799999999998742 23467899999
Q ss_pred ceEEEEEecHHHHHHHHHHcHHhhcc
Q 042233 365 TNVDAFMLMADDLKIVFNDMMNQLGL 390 (392)
Q Consensus 365 ~~~~l~~L~~~~f~~ll~~~P~~~~~ 390 (392)
++|+++.|++++|.++++++|++.+.
T Consensus 315 ~~~~l~~i~~~~f~~ll~~~p~~~~~ 340 (355)
T 3beh_A 315 TTVSLLSLHSADFQMLCSSSPEIAEI 340 (355)
T ss_dssp --------------------------
T ss_pred ccEEEEEEeHHHHHHHHHHCHHHHHH
Confidence 99999999999999999999998654
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.85 E-value=7.4e-21 Score=162.28 Aligned_cols=138 Identities=21% Similarity=0.322 Sum_probs=116.4
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEe
Q 042233 226 VQNLLNNLPNELRRELKRELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 226 ~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~ 305 (392)
.+++++.||++||.++..+++.++++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred cCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcH
Q 042233 306 KDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMM 385 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P 385 (392)
+ ..+..+.+|++||+.+++. . ...++.++++|.++|+++.|++++|.++++++|
T Consensus 85 ~-------------------~~~~~~~~G~~fG~~~~~~---~----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 138 (160)
T 4f8a_A 85 D-------------------EVVAILGKGDVFGDVFWKE---A----TLAQSCANVRALTYCDLHVIKRDALQKVLEFYT 138 (160)
T ss_dssp T-------------------EEEEEEETTCEEECCTTTC---S----SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred C-------------------EEEEEecCCCEeCcHHHhc---C----cccceEEEEEECCceEEEEEcHHHHHHHHHHHH
Confidence 2 3567899999999998742 1 113577899999999999999999999999999
Q ss_pred Hhhc
Q 042233 386 NQLG 389 (392)
Q Consensus 386 ~~~~ 389 (392)
++..
T Consensus 139 ~~~~ 142 (160)
T 4f8a_A 139 AFSH 142 (160)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 6
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.78 E-value=7.4e-19 Score=146.60 Aligned_cols=130 Identities=17% Similarity=0.239 Sum_probs=112.1
Q ss_pred hCcHHHHHHHHHHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccC
Q 042233 232 NLPNELRRELKRELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 311 (392)
Q Consensus 232 ~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~ 311 (392)
++|..+|.+...+...++|+++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. ++
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~g---- 81 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-EG---- 81 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-TT----
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-CC----
Confidence 5778888888888889999999999999999999999999999999999999999999999999999999965 21
Q ss_pred cccCCcccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 312 STSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 312 ~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
..+..+.+|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|.+-.
T Consensus 82 --------------~~~~~~~~G~~fGe~~~l~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r 136 (139)
T 3ocp_A 82 --------------VKLCTMGPGKVFGELAILY---------NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH 136 (139)
T ss_dssp --------------EEEEEECTTCEESCHHHHH---------CCCCSSEEEESSCEEEEEEEHHHHHHHHTC------
T ss_pred --------------EEEEEeCCCCEeccHHHHC---------CCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhh
Confidence 3567899999999998753 134678999999999999999999999999998754
No 7
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.75 E-value=1.3e-17 Score=142.77 Aligned_cols=125 Identities=17% Similarity=0.175 Sum_probs=110.0
Q ss_pred HHHHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccc
Q 042233 241 LKRELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRY 320 (392)
Q Consensus 241 i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~ 320 (392)
-..+...++|+++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++...+
T Consensus 31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~------------- 97 (161)
T 3idb_B 31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCD------------- 97 (161)
T ss_dssp HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEET-------------
T ss_pred HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCC-------------
Confidence 3345567899999999999999999999999999999999999999999999999999999998433
Q ss_pred cCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 321 DGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 321 ~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
+++..+..+.+|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|.+-.
T Consensus 98 --g~~~~~~~~~~G~~fGe~~~~~---------~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 98 --GVGRCVGNYDNRGSFGELALMY---------NTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp --TEEEEEEEEESCCEECGGGGTC---------CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred --CCeEEEEEcCCCCEechHHHHc---------CCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 2346788999999999998842 234778999999999999999999999999998753
No 8
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.74 E-value=9.4e-18 Score=139.82 Aligned_cols=119 Identities=12% Similarity=0.150 Sum_probs=102.0
Q ss_pred HHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccc
Q 042233 248 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRK 327 (392)
Q Consensus 248 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (392)
+.|+++|+|++++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+. ++++..
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~--------------~g~~~~ 71 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNG--------------GAGSAA 71 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC----------------------
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECC--------------CCCceE
Confidence 568899999999999999999999999999999999999999999999999999986432 123345
Q ss_pred ---cccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 328 ---EDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 328 ---i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
+..+.+|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|++..
T Consensus 72 ~~~~~~~~~G~~fG~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 127 (142)
T 3mdp_A 72 NSTVCSVVPGAIFGVSSLIK---------PYHYTSSARATKPVRVVDINGARLREMSENNQALGQ 127 (142)
T ss_dssp -CEEEEECTTCEECGGGSST---------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred eeeEEEecCCCEechHHHcC---------CCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHH
Confidence 78999999999998742 234778999999999999999999999999998763
No 9
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.74 E-value=1e-17 Score=139.07 Aligned_cols=128 Identities=40% Similarity=0.738 Sum_probs=104.8
Q ss_pred HHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccc
Q 042233 248 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRK 327 (392)
Q Consensus 248 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (392)
++++++|+|+.++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++....+ +++..
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~---------------g~~~~ 70 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG---------------GRSGF 70 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSS---------------CSSSS
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCC---------------Cccee
Confidence 357899999999999999999999999999999999999999999999999999763322 23345
Q ss_pred cc--cccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhcc
Q 042233 328 ED--LLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLGL 390 (392)
Q Consensus 328 i~--~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 390 (392)
+. .+.+|++||+.++++.+...+....++++++++|.++|+++.|++++|.++++++|++-.+
T Consensus 71 ~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~k 135 (137)
T 1wgp_A 71 YNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGPS 135 (137)
T ss_dssp SCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTTT
T ss_pred eeeeeecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHhh
Confidence 55 9999999999986222333221111246789999999999999999999999999987653
No 10
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.72 E-value=3.8e-17 Score=137.16 Aligned_cols=120 Identities=20% Similarity=0.182 Sum_probs=106.3
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+. ++++.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~--------------~g~~~ 69 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSP--------------DGREN 69 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECT--------------TSSEE
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECC--------------CCcEE
Confidence 3568899999999999999999999999999999999999999999999999999997642 23456
Q ss_pred ccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 327 KEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 327 ~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
.+..+.+|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|++..
T Consensus 70 ~~~~~~~g~~~G~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 123 (149)
T 2pqq_A 70 MLAVVGPSELIGELSLFD---------PGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVAT 123 (149)
T ss_dssp EEEEECTTCEESGGGGTS---------CEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHH
T ss_pred EEEEcCCcCEechHHhcC---------CCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHH
Confidence 788999999999998742 234678999999999999999999999999998764
No 11
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.72 E-value=5.7e-17 Score=142.59 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=117.6
Q ss_pred HHHHHhhCcHHH----HHHHHHHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEE
Q 042233 226 VQNLLNNLPNEL----RRELKRELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLR 301 (392)
Q Consensus 226 ~~~il~~Lp~~L----r~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~ 301 (392)
+....+.++|+| +.+...+...++++++|+|++++++.+..++..++.+.|.+|++|+++|++++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 344444454443 2344455667899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHH
Q 042233 302 TYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVF 381 (392)
Q Consensus 302 v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll 381 (392)
++..+. ++++.++..+.+|++||+.+++. ..++.++++|.++|+++.|++++|.+++
T Consensus 93 v~~~~~--------------~g~~~~~~~~~~G~~fGe~~~l~---------~~~~~~~v~A~~~~~v~~i~~~~~~~l~ 149 (187)
T 3gyd_A 93 VIKDIP--------------NKGIQTIAKVGAGAIIGEMSMID---------GMPRSASCVASLPTDFAVLSRDALYQLL 149 (187)
T ss_dssp EEEEET--------------TTEEEEEEEEETTCEESHHHHHH---------CCCCSSEEEEEEEEEEEEEEHHHHHHHH
T ss_pred EEEECC--------------CCCeEEEEEccCCCeeeeHHHhC---------CCCeeEEEEECCCeEEEEEcHHHHHHHH
Confidence 998642 23456788999999999998753 1246789999999999999999999999
Q ss_pred HHcHHhh
Q 042233 382 NDMMNQL 388 (392)
Q Consensus 382 ~~~P~~~ 388 (392)
+++|++.
T Consensus 150 ~~~p~~~ 156 (187)
T 3gyd_A 150 ANMPKLG 156 (187)
T ss_dssp HHCHHHH
T ss_pred HHChHHH
Confidence 9999875
No 12
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.71 E-value=8.1e-17 Score=136.02 Aligned_cols=121 Identities=17% Similarity=0.259 Sum_probs=104.4
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
.++++++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+. ++++.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~--------------~g~~~ 76 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTP--------------EGQEK 76 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-------------------
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECC--------------CCCEE
Confidence 4679999999999999999999999999999999999999999999999999999986432 23446
Q ss_pred ccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 327 KEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 327 ~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
.+..+.+|++||+.+++. +.+++.++++|.++|+++.|++++|.++++++|++..
T Consensus 77 ~~~~~~~G~~~G~~~~~~--------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 131 (154)
T 2z69_A 77 ILEVTNERNTFAEAMMFM--------DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLAL 131 (154)
T ss_dssp CCEEECTTEEESGGGGGS--------SCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHH
T ss_pred EEEEccCCCeeccHhhcc--------CCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHH
Confidence 788999999999998742 2233678999999999999999999999999998764
No 13
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.70 E-value=1.8e-16 Score=134.52 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=104.2
Q ss_pred HHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCc
Q 042233 244 ELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGK 323 (392)
Q Consensus 244 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~ 323 (392)
.....+|+++|+|++++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.. +
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-~---------------- 96 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN-N---------------- 96 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEET-T----------------
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEC-C----------------
Confidence 34567899999999999999999999999999999999999999999999999999999972 1
Q ss_pred cccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 324 NTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 324 ~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
..+..+.+|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|.+-.
T Consensus 97 --~~~~~~~~G~~fGe~~~~~---------~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 97 --EWATSVGEGGSFGELALIY---------GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp --EEEEEECTTCEECCHHHHH---------CCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred --EEEEEecCCCEeeehHhhc---------CCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 2456899999999998853 124678999999999999999999999999997643
No 14
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.69 E-value=2.8e-16 Score=130.40 Aligned_cols=113 Identities=25% Similarity=0.358 Sum_probs=101.6
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
.++++++|+|++++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ .
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~----------------- 70 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--P----------------- 70 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--C-----------------
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--c-----------------
Confidence 478999999999999999999999999999999999999999999999999999998642 1
Q ss_pred ccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 327 KEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 327 ~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
..+.+|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|++..
T Consensus 71 --~~~~~G~~~G~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 122 (138)
T 1vp6_A 71 --VELGPGAFFGEMALIS---------GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAE 122 (138)
T ss_dssp --EEECTTCEECHHHHHH---------CCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred --ceECCCCEeeehHhcc---------CCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHH
Confidence 2789999999998853 123668999999999999999999999999998764
No 15
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.68 E-value=1.2e-16 Score=150.51 Aligned_cols=132 Identities=16% Similarity=0.223 Sum_probs=117.5
Q ss_pred HHHhhCcHHHHHHHHHHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecC
Q 042233 228 NLLNNLPNELRRELKRELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKD 307 (392)
Q Consensus 228 ~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~ 307 (392)
....++|+..|.+...+...++++++++|++++++.+..|+..++.+.|.+|++|+++||.++.+|||.+|.|++...+
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g- 97 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG- 97 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETT-
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECC-
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999996521
Q ss_pred CccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHh
Q 042233 308 IQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQ 387 (392)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~ 387 (392)
..+..+.+|++|||.+++. ..+|+++++|.++|+++.|++++|.++++.+|..
T Consensus 98 ------------------~~~~~~~~G~~fGe~~ll~---------~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~ 150 (299)
T 3shr_A 98 ------------------VKLCTMGPGKVFGELAILY---------NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLI 150 (299)
T ss_dssp ------------------EEEEEECTTCEESCSGGGT---------TTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHH
T ss_pred ------------------EEEEEeCCCCeeeHhHHhc---------CCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHH
Confidence 3566899999999998853 2357899999999999999999999999999864
No 16
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.68 E-value=4.2e-16 Score=139.41 Aligned_cols=117 Identities=17% Similarity=0.255 Sum_probs=102.4
Q ss_pred hhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccc
Q 042233 250 LKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKED 329 (392)
Q Consensus 250 l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 329 (392)
|+++|+|++++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+. ++++.++.
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~--------------~g~~~~~~ 66 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHL--------------GGQERTLA 66 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECS--------------SSCEEEEE
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECC--------------CCCEEEEE
Confidence 5689999999999999999999999999999999999999999999999999997642 23456888
Q ss_pred cccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 330 LLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 330 ~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
.+.+|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|++..
T Consensus 67 ~~~~g~~~G~~~~~~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 117 (216)
T 4ev0_A 67 LLGPGELFGEMSLLD---------EGERSASAVAVEDTELLALFREDYLALIRRLPLVAH 117 (216)
T ss_dssp EECTTCEECHHHHHH---------CCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred EecCCCEEeehhhcC---------CCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHH
Confidence 999999999998753 123678999999999999999999999999999764
No 17
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.67 E-value=4e-16 Score=137.37 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=105.5
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
..+++++|.|.+++++.+..+...++.+.|++|++|+++||+++.+|||.+|.|+++..+. ++++.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~--------------~G~e~ 71 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDE--------------KGIEQ 71 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECT--------------TSCEE
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECC--------------CCCEE
Confidence 4577889999999999999999999999999999999999999999999999999997542 23457
Q ss_pred ccccccCCCeechh-hhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 327 KEDLLQDGDFYGEE-LIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 327 ~i~~l~~G~~FGe~-~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
++..+.+|++||+. +++. ..++.++++|.++|+++.|++++|.++++++|++..
T Consensus 72 ~~~~~~~g~~~ge~~~~~~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 126 (194)
T 3dn7_A 72 TTQFAIENWWLSDYMAFQK---------QQPADFYIQSVENCELLSITYTEQENLFERIPALER 126 (194)
T ss_dssp EEEEEETTCEECCHHHHHH---------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHH
T ss_pred EEEEccCCcEEeehHHHhc---------CCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHH
Confidence 78899999999987 5532 234678999999999999999999999999998754
No 18
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.66 E-value=7.1e-16 Score=140.10 Aligned_cols=122 Identities=11% Similarity=0.104 Sum_probs=108.6
Q ss_pred HHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcc
Q 042233 245 LCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKN 324 (392)
Q Consensus 245 ~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~ 324 (392)
...+.|+++|+|++++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+. +++
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~--------------~G~ 73 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTP--------------TGS 73 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECT--------------TSC
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECC--------------CCC
Confidence 346789999999999999999999999999999999999999999999999999999998542 234
Q ss_pred ccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 325 TRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 325 ~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
+.++..+.+|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|++..
T Consensus 74 ~~~~~~~~~G~~~G~~~~~~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 129 (237)
T 3fx3_A 74 EAVVSVFTRGESFGEAVALR---------NTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICI 129 (237)
T ss_dssp EEEEEEEETTEEECHHHHHH---------TCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred EEEEEEeCCCCEechHHHhc---------CCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHH
Confidence 57888999999999998853 124678999999999999999999999999999864
No 19
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.66 E-value=5.7e-16 Score=131.05 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH--------HHHhcchhHH
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQR------YLKLG--------KEMTLKPREI 193 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~------il~~~--------~~~~~~~~~l 193 (392)
|..|+||+++|+|||||||++|.|..+++++++.+++|.+++++.++.++. +.... .+..++++.+
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999887 32222 3455678888
Q ss_pred HhhcccccCcHHHHHH
Q 042233 194 EEWQPFQKLSKNLQQK 209 (392)
Q Consensus 194 ~~~m~~~~lp~~L~~r 209 (392)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999988865
No 20
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.66 E-value=5.2e-16 Score=140.44 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=106.5
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
.++|+++|+|++++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+. ++++.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~--------------~g~~~ 70 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSL--------------GGRER 70 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC----------------CEE
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECC--------------CCceE
Confidence 3678999999999999999999999999999999999999999999999999999997542 23457
Q ss_pred ccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 327 KEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 327 ~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
++..+.+|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|++..
T Consensus 71 ~~~~~~~g~~~G~~~~~~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 124 (231)
T 3e97_A 71 VLGDIYAPGVVGETAVLA---------HQERSASVRALTPVRTLMLHREHFELILRRHPRVLW 124 (231)
T ss_dssp EEEEEESSEEESTTTTTC---------CCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHH
T ss_pred EEEecCCCCEEeeHHHhC---------CCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence 788999999999998742 234778999999999999999999999999998764
No 21
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.66 E-value=3.3e-17 Score=135.75 Aligned_cols=117 Identities=10% Similarity=0.177 Sum_probs=100.1
Q ss_pred HHHHHHhhcccccccCcHHHHHHHhhhcceeeeC-CCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccC
Q 042233 244 ELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFT-EHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDG 322 (392)
Q Consensus 244 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~-~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~ 322 (392)
....++|+++++|..++++.+..++..++.+.|. +|++|+++|+.++.+|||.+|.|+++..++ +
T Consensus 12 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g-~------------- 77 (134)
T 2d93_A 12 EQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDG-K------------- 77 (134)
T ss_dssp HHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSS-C-------------
T ss_pred HHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCC-c-------------
Confidence 3445678999999999999999999999999999 999999999999999999999999986332 1
Q ss_pred ccccccccccCCCeechhhhhhhhccCCCCCCCCcceeE-EEcceEEEEEecHHHHHHHHHHcHHhh
Q 042233 323 KNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTI-QALTNVDAFMLMADDLKIVFNDMMNQL 388 (392)
Q Consensus 323 ~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv-~A~~~~~l~~L~~~~f~~ll~~~P~~~ 388 (392)
+ ..+.+|++||+.+++. ..++.+++ +|.++|+++.|++++|.++++++++..
T Consensus 78 --~---~~l~~G~~fG~~~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (134)
T 2d93_A 78 --V---ENLFMGNSFGITPTLD---------KQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKSG 130 (134)
T ss_dssp --E---EEECTTCEESCCSSSC---------CEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSSSS
T ss_pred --E---EEecCCCccChhHhcC---------CCcceeEEEEEecceEEEEEeHHHHHHHHHHHHhcc
Confidence 1 3689999999998732 23355678 999999999999999999999887653
No 22
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.64 E-value=1.5e-15 Score=136.09 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=104.4
Q ss_pred HHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccc
Q 042233 248 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRK 327 (392)
Q Consensus 248 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (392)
++++++|+|++++++.++.+...++.+.|++|++|+++||+++.+|||.+|.|+++..+. ++++.+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~--------------~G~~~~ 68 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSD--------------EGREIT 68 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECT--------------TSCEEE
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECC--------------CCCEEE
Confidence 578999999999999999999999999999999999999999999999999999997542 234567
Q ss_pred cccccCCCe--echhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 328 EDLLQDGDF--YGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 328 i~~l~~G~~--FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
+..+.+|++ ||+.+++. ..++.++++|.++|+++.|++++|.++++++|++..
T Consensus 69 ~~~~~~G~~~~~g~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 123 (220)
T 3dv8_A 69 LYRLFDMDMCLLSASCIMR---------SIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVAN 123 (220)
T ss_dssp EEEECTTCEESGGGGGGCT---------TCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred EEecCCCCeeehhHHHHhC---------CCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHH
Confidence 889999999 78887732 234678999999999999999999999999998764
No 23
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.64 E-value=3.9e-16 Score=140.89 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=106.7
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
.+.++++|+|.+++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++..+. ++++.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~--------------~g~~~ 70 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP--------------DGREN 70 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECT--------------TSCEE
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECC--------------CCcEE
Confidence 4578999999999999999999999999999999999999999999999999999997642 23456
Q ss_pred ccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 327 KEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 327 ~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
++..+.+|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|++..
T Consensus 71 ~~~~~~~G~~~G~~~~~~---------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 124 (227)
T 3d0s_A 71 LLTIMGPSDMFGELSIFD---------PGPRTSSATTITEVRAVSMDRDALRSWIADRPEISE 124 (227)
T ss_dssp EEEEECTTCEESCHHHHS---------CSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHH
T ss_pred EEEEecCCCEEeeHHHcC---------CCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHH
Confidence 788999999999998742 224678999999999999999999999999998754
No 24
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.64 E-value=3.2e-15 Score=140.01 Aligned_cols=125 Identities=17% Similarity=0.250 Sum_probs=108.5
Q ss_pred HHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCc
Q 042233 244 ELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGK 323 (392)
Q Consensus 244 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~ 323 (392)
.+...+++++++|..+++..+..++..++.+.|.+|++|+++||+++.+|||.+|.|++...... ++
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~-------------~~ 219 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSE-------------NE 219 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECST-------------TS
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCC-------------CC
Confidence 34467788999999999999999999999999999999999999999999999999999875321 12
Q ss_pred cccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhcc
Q 042233 324 NTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLGL 390 (392)
Q Consensus 324 ~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 390 (392)
++..+..+.+|++|||.+++. ..+|+++++|.++|+++.|++++|.+++.++|++.+.
T Consensus 220 ~~~~~~~l~~G~~fGe~~ll~---------~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~ 277 (291)
T 2qcs_B 220 EFVEVGRLGPSDYFGEIALLM---------NRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKR 277 (291)
T ss_dssp CEEEEEEECTTCEECSGGGTC---------CCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTT
T ss_pred ccEEEEEeCCCCEecHHHHcC---------CCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHH
Confidence 346788999999999998842 2347899999999999999999999999999998653
No 25
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.63 E-value=4.6e-16 Score=129.68 Aligned_cols=87 Identities=9% Similarity=0.199 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcchhHHHhhc-ccccCc
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG---KEMTLKPREIEEWQ-PFQKLS 203 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~---~~~~~~~~~l~~~m-~~~~lp 203 (392)
|..|+||+++|||||||||++|.|..+++++++++++|++++|++++.+++.+.+. ++.+++.+++.+.+ +..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 88999999999999999999999999999999999999999999999999887654 22222222232222 233455
Q ss_pred HHHHHHHHHHH
Q 042233 204 KNLQQKVKKYK 214 (392)
Q Consensus 204 ~~L~~ri~~y~ 214 (392)
++.+..+++++
T Consensus 124 ~~~i~~l~~~l 134 (137)
T 4h33_A 124 KEEIAVVEQFL 134 (137)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 26
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.7e-15 Score=137.89 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=106.2
Q ss_pred HHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcc
Q 042233 245 LCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKN 324 (392)
Q Consensus 245 ~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~ 324 (392)
++..+++++|+|+.+++..+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++..+.
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~----------------- 184 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ----------------- 184 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTT-----------------
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCC-----------------
Confidence 345678889999999999999999999999999999999999999999999999999987542
Q ss_pred ccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhcc
Q 042233 325 TRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLGL 390 (392)
Q Consensus 325 ~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 390 (392)
..+..+.+|++|||.+++. ..+|+++++|.++|+++.|++++|.+++..+|++++.
T Consensus 185 -~~~~~l~~g~~fGe~~~~~---------~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~~ 240 (246)
T 3of1_A 185 -GVINKLKDHDYFGEVALLN---------DLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLKL 240 (246)
T ss_dssp -EEEEEEETTCEECHHHHHH---------TCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHHH
T ss_pred -ceEEEcCCCCcccHHHHhC---------CCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHhc
Confidence 1566899999999999853 2347899999999999999999999999999998764
No 27
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.63 E-value=1.5e-15 Score=137.75 Aligned_cols=121 Identities=11% Similarity=0.059 Sum_probs=106.5
Q ss_pred HHHhhcccccccCcHHHHHHHhhh--cceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDC--VKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKN 324 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~--l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~ 324 (392)
...++++|+|+.++++.+..++.. ++.+.|.+|++|+++||+++.+|||.+|.|+++..+ ++++
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~--------------~~G~ 82 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNA--------------KENI 82 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEEC--------------GGGS
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEEC--------------CCCC
Confidence 467899999999999999999998 999999999999999999999999999999998754 2234
Q ss_pred ccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 325 TRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 325 ~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
+.++..+.+|++||+.+++. +.+++.++++|.++|+++.|++++|.++++++|++..
T Consensus 83 ~~~l~~~~~G~~fG~~~~~~--------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 139 (232)
T 1zyb_A 83 YTVIEQIEAPYLIEPQSLFG--------MNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRL 139 (232)
T ss_dssp CEEEEEEESSEEECGGGGSS--------SCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHH
T ss_pred EEEEEEccCCCeeeehHHhC--------CCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHH
Confidence 57888999999999998742 2233678999999999999999999999999998764
No 28
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.63 E-value=2.2e-15 Score=144.18 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=105.1
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
.+.|+++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++..+.+ +++
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~--------------g~~- 76 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDD--------------GVA- 76 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTT--------------CCE-
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCC--------------CcE-
Confidence 46889999999999999999999999999999999999999999999999999999976532 122
Q ss_pred ccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 327 KEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 327 ~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
++..+.+|++||+.+++. ..+++++++|.++|+++.|++++|.+++ ++|++..
T Consensus 77 ~~~~~~~G~~fGe~~l~~---------~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~ 129 (333)
T 4ava_A 77 IIARALPGMIVGEIALLR---------DSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGE 129 (333)
T ss_dssp EEEEECTTCEESHHHHHH---------TCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHH
T ss_pred EEEEecCCCEeeHHHhcC---------CCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHH
Confidence 778999999999998853 2347789999999999999999999999 9998764
No 29
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.62 E-value=2.9e-15 Score=135.21 Aligned_cols=121 Identities=15% Similarity=0.218 Sum_probs=96.6
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
...+++.++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+. ++++.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~--------------~G~~~ 75 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEED--------------DDREL 75 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECT--------------TSCEE
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECC--------------CCCEE
Confidence 4578889999999999999999999999999999999999999999999999999997542 23457
Q ss_pred ccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHc-----HHhhc
Q 042233 327 KEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDM-----MNQLG 389 (392)
Q Consensus 327 ~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~-----P~~~~ 389 (392)
++..+.+|++||+.+++. +.+++.++++|.++|+++.|++++|.++++++ |++..
T Consensus 76 ~~~~~~~g~~~G~~~~~~--------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~ 135 (230)
T 3iwz_A 76 VLGYFGSGEFVGEMGLFI--------ESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILY 135 (230)
T ss_dssp EEEEECTTCEESCGGGTS--------CCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHH
T ss_pred EEEEecCCCEEEehhhhc--------CCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHH
Confidence 888999999999998742 22346789999999999999999999999999 98753
No 30
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.62 E-value=7.2e-16 Score=138.95 Aligned_cols=121 Identities=17% Similarity=0.259 Sum_probs=106.4
Q ss_pred HHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 247 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 247 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
.++|+++|+|++++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +++++.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--------------~~G~~~ 73 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLT--------------PEGQEK 73 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCC--------------GGGCCB
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEEC--------------CCCCEE
Confidence 467899999999999999999999999999999999999999999999999999998643 223456
Q ss_pred ccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 327 KEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 327 ~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
++..+++|++||+.+++. +.+.+.++++|.++|+++.|++++|.++++++|++..
T Consensus 74 ~~~~~~~g~~~G~~~~~~--------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 128 (227)
T 3dkw_A 74 ILEVTNERNTFAEAMMFM--------DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLAL 128 (227)
T ss_dssp CCCEECTTEEESCTTTTT--------TCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHH
T ss_pred EEEEcCCCCEeeeHHhcC--------CCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence 788999999999998742 2222678999999999999999999999999998764
No 31
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.61 E-value=2.1e-15 Score=141.98 Aligned_cols=124 Identities=20% Similarity=0.310 Sum_probs=109.2
Q ss_pred HHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCc
Q 042233 244 ELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGK 323 (392)
Q Consensus 244 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~ 323 (392)
..+..+++++|+|+.++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++..+. +++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~-------------~~g 219 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDS-------------PNE 219 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCS-------------SSC
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecC-------------CCC
Confidence 4457889999999999999999999999999999999999999999999999999999998541 123
Q ss_pred cccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 324 NTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 324 ~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
++..+..+.+|++|||.+++. ..+|+++++|.++|+++.|++++|.++++++|++..
T Consensus 220 ~~~~~~~l~~G~~fGe~~ll~---------~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~ 276 (299)
T 3shr_A 220 DPVFLRTLGKGDWFGEKALQG---------EDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSN 276 (299)
T ss_dssp CCEEEEEEETTCEECGGGGSS---------SEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCH
T ss_pred cceEEEEcCCCCEeChHHHhC---------CCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHH
Confidence 456788999999999998842 235789999999999999999999999999998754
No 32
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.61 E-value=3.5e-15 Score=135.05 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=100.4
Q ss_pred cccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccc
Q 042233 252 KVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLL 331 (392)
Q Consensus 252 ~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 331 (392)
++|+|+.++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+. ++++.++..+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~--------------~g~~~~~~~~ 79 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGV--------------YGRFHISRIV 79 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-------------------CCCEEEEE
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECC--------------CCCEEEEEEe
Confidence 57999999999999999999999999999999999999999999999999986532 2345678899
Q ss_pred cCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 332 QDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 332 ~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
.+|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|++..
T Consensus 80 ~~G~~~G~~~~~~---------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 128 (232)
T 2gau_A 80 KPGQFFGMRPYFA---------EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCR 128 (232)
T ss_dssp CTTCEESHHHHHH---------TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred CCCCEeeeehhhC---------CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHH
Confidence 9999999998753 123678999999999999999999999999998764
No 33
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.6e-15 Score=135.78 Aligned_cols=113 Identities=16% Similarity=0.198 Sum_probs=101.3
Q ss_pred HHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccc
Q 042233 246 CWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNT 325 (392)
Q Consensus 246 ~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~ 325 (392)
..++|+++|+|++++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~------------------- 65 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVND------------------- 65 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTT-------------------
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECC-------------------
Confidence 3578899999999999999999999999999999999999999999999999999998632
Q ss_pred cccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHH
Q 042233 326 RKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMN 386 (392)
Q Consensus 326 ~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~ 386 (392)
..+..+.+|++||+.+++. ..+++++++|.++|+++.|++++|.+++.++|.
T Consensus 66 ~~~~~~~~g~~fGe~~l~~---------~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~ 117 (246)
T 3of1_A 66 NKVNSSGPGSSFGELALMY---------NSPRAATVVATSDCLLWALDRLTFRKILLGSSF 117 (246)
T ss_dssp SCCEEECTTCEECHHHHHH---------TCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTS
T ss_pred EEEEecCCCCeeehhHHhc---------CCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHH
Confidence 2356899999999998854 234778999999999999999999999998884
No 34
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.59 E-value=9.3e-15 Score=144.44 Aligned_cols=123 Identities=17% Similarity=0.192 Sum_probs=109.0
Q ss_pred HHHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCccccc
Q 042233 242 KRELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYD 321 (392)
Q Consensus 242 ~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~ 321 (392)
..+...+.|+++++|++++++.+..|+..++.+.|.+|++|+++||.++.+|||.+|.|+++...+
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~-------------- 204 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCD-------------- 204 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECS--------------
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecC--------------
Confidence 344567899999999999999999999999999999999999999999999999999999997433
Q ss_pred CccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhh
Q 042233 322 GKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQL 388 (392)
Q Consensus 322 ~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~ 388 (392)
+++..+..+.+|++||+.+++. ..+|.++++|.++|+++.|++++|.+++.++|..-
T Consensus 205 -G~~~~v~~l~~G~~fGe~all~---------~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~ 261 (416)
T 3tnp_B 205 -GVGRCVGNYDNRGSFGELALMY---------NTPKAATITATSPGALWGLDRVTFRRIIVKNNAKK 261 (416)
T ss_dssp -SCEEEEEEEESCCEECGGGGTS---------CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEecCCCEEeeHHHhc---------CCCcccEEEEccCeEEEEEeehhhhhhhhcchhHH
Confidence 2346788999999999998842 23578999999999999999999999999999864
No 35
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.58 E-value=1.5e-14 Score=135.47 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=104.5
Q ss_pred HHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCc
Q 042233 244 ELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGK 323 (392)
Q Consensus 244 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~ 323 (392)
+...++|+++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++. ++
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g---------------- 97 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NN---------------- 97 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TT----------------
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CC----------------
Confidence 4457889999999999999999999999999999999999999999999999999999988 22
Q ss_pred cccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhh
Q 042233 324 NTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQL 388 (392)
Q Consensus 324 ~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~ 388 (392)
..+..+.+|++||+.+++. ..++.++++|.++|+++.|++++|.+++.++|.+.
T Consensus 98 --~~~~~l~~G~~fGe~~l~~---------~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (291)
T 2qcs_B 98 --EWATSVGEGGSFGELALIY---------GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRK 151 (291)
T ss_dssp --EEEEEECTTCEECGGGGTC---------CCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHH
T ss_pred --eEEEEcCCCCccchHHHhc---------CCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHH
Confidence 2466899999999998742 23578999999999999999999999999998763
No 36
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.57 E-value=4.9e-15 Score=144.79 Aligned_cols=125 Identities=17% Similarity=0.251 Sum_probs=109.6
Q ss_pred HHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccC
Q 042233 243 RELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDG 322 (392)
Q Consensus 243 ~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~ 322 (392)
..++..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+.. +
T Consensus 243 ~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~-------------~ 309 (381)
T 4din_B 243 RKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSP-------------N 309 (381)
T ss_dssp HHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSS-------------S
T ss_pred HHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCC-------------C
Confidence 355678899999999999999999999999999999999999999999999999999999975421 1
Q ss_pred ccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 323 KNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 323 ~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
+++..+..+++|++|||.+++. ..+|+++++|.++|+++.|++++|.+++..+|++++
T Consensus 310 ~~~~~v~~l~~Gd~fGe~all~---------~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~ 367 (381)
T 4din_B 310 EEYVEVGRLGPSDYFGEIALLL---------NRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILK 367 (381)
T ss_dssp SCCCEEEEECTTCEECTTGGGS---------CCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHH
T ss_pred CceEEEEEeCCCCEechHHHhC---------CCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHH
Confidence 2245688999999999998852 235789999999999999999999999999999865
No 37
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.57 E-value=1.7e-14 Score=128.23 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=96.6
Q ss_pred cccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccC
Q 042233 254 QGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQD 333 (392)
Q Consensus 254 ~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 333 (392)
++++.+|++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+. ++++.++..+.+
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~--------------~g~~~~~~~~~~ 67 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDE--------------EGKEMILSYLNQ 67 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECT--------------TCCEEEEEEEET
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECC--------------CCCEEEEEEcCC
Confidence 466779999999999999999999999999999999999999999999997642 234578889999
Q ss_pred CCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 334 GDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 334 G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
|++||+.+++. +.+++.++++|.++|+++.|++++|.++++++|++..
T Consensus 68 g~~~G~~~~~~--------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 115 (210)
T 3ryp_A 68 GDFIGELGLFE--------EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM 115 (210)
T ss_dssp TCEESCTTTTS--------TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred CCEeeeHHHhc--------CCCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHH
Confidence 99999998742 2224778999999999999999999999999998764
No 38
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.56 E-value=1.6e-14 Score=144.57 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=117.0
Q ss_pred CcHHHHHHHHHHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCc
Q 042233 233 LPNELRRELKRELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGS 312 (392)
Q Consensus 233 Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~ 312 (392)
.|+..|.+-..+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++..+...
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g--- 103 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSS--- 103 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSC---
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCC---
Confidence 56777777777788899999999999999999999999999999999999999999999999999999999754211
Q ss_pred ccCCcccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 313 TSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 313 ~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
.+++..+..+.+|++||+.+ +. ..+++++++|.++|+++.|++++|.++++++|++..
T Consensus 104 ---------~~~~~~~~~~~~G~~fGe~~-l~---------~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~ 161 (469)
T 1o7f_A 104 ---------HQDAVTICTLGIGTAFGESI-LD---------NTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (469)
T ss_dssp ---------GGGCEEEEEECTTCEECGGG-GG---------TCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTT
T ss_pred ---------CCcceEEEEccCCCCcchhh-hC---------CCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHH
Confidence 01246788999999999987 43 234779999999999999999999999999998754
No 39
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.56 E-value=1.7e-14 Score=120.65 Aligned_cols=57 Identities=9% Similarity=0.217 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
.|..|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.+++.+.+.
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~ 96 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 96 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999877555
No 40
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.54 E-value=5.2e-14 Score=124.81 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=94.8
Q ss_pred CcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeec
Q 042233 259 LNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYG 338 (392)
Q Consensus 259 ~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FG 338 (392)
+|++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+. ++++.++..+.+|++||
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~--------------~G~~~~~~~~~~g~~~G 66 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDD--------------DGREMIIGYLNSGDFFG 66 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECT--------------TSCEEEEEEEETTCEES
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECC--------------CCCEEEEEEcCCCCCcc
Confidence 5789999999999999999999999999999999999999999997542 23457888999999999
Q ss_pred hhhhhhhhccCCCCCCC---CcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 339 EELIDWALRDRFSFDIP---KSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 339 e~~ll~~l~~~~~~~~~---~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
+.+++. +.+ ++.++++|.++|+++.|++++|.++++++|++..
T Consensus 67 ~~~~~~--------~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 112 (207)
T 2oz6_A 67 ELGLFE--------KEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILY 112 (207)
T ss_dssp CTTTCC-------------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred cHHHhc--------CCCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHH
Confidence 998742 121 4678999999999999999999999999998754
No 41
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.53 E-value=3.6e-14 Score=140.24 Aligned_cols=128 Identities=12% Similarity=0.202 Sum_probs=105.9
Q ss_pred HHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccc
Q 042233 246 CWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNT 325 (392)
Q Consensus 246 ~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~ 325 (392)
+..+++++++|+.+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+.... ....+++
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~--------~~~~g~~ 336 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKS--------EVEENGA 336 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC--------------------
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcc--------cccCCce
Confidence 34578889999999999999999999999999999999999999999999999999986542100 0012345
Q ss_pred cccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhcc
Q 042233 326 RKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLGL 390 (392)
Q Consensus 326 ~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 390 (392)
..+..+++|++|||.+++. ..+|+++|+|.++|+++.|++++|.+++..+|++...
T Consensus 337 ~~l~~l~~G~~fGE~all~---------~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~ 392 (416)
T 3tnp_B 337 VEIARCFRGQYFGELALVT---------NKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKR 392 (416)
T ss_dssp CEEEEECTTCEESGGGGTC---------CSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTC
T ss_pred eEEEEeCCCCEecHHHHhC---------CCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHH
Confidence 6788999999999998842 2357899999999999999999999999999998754
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=140.77 Aligned_cols=117 Identities=16% Similarity=0.207 Sum_probs=104.5
Q ss_pred HHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCc
Q 042233 244 ELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGK 323 (392)
Q Consensus 244 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~ 323 (392)
+...++|+++++|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++..+
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~----------------- 188 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNG----------------- 188 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETT-----------------
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECC-----------------
Confidence 345688999999999999999999999999999999999999999999999999999999722
Q ss_pred cccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhh
Q 042233 324 NTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQL 388 (392)
Q Consensus 324 ~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~ 388 (392)
..+..+.+|++||+.+++. ..+|.++++|.++|+++.|++++|.+++.++|..-
T Consensus 189 --~~v~~l~~G~~fGe~all~---------~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~ 242 (381)
T 4din_B 189 --EWVTNISEGGSFGELALIY---------GTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRK 242 (381)
T ss_dssp --EEEEEEESSCCBCGGGGTS---------CCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred --eEeeeCCCCCEEEchHHhc---------CCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHH
Confidence 2456899999999998843 23578999999999999999999999999998753
No 43
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.51 E-value=6.3e-14 Score=153.00 Aligned_cols=129 Identities=19% Similarity=0.239 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCc
Q 042233 238 RRELKRELCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDH 317 (392)
Q Consensus 238 r~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~ 317 (392)
|.+=-.++-...|+++++|+++++..+.+|+..|+.+.|++|++|+++||.++++|+|.+|.|.|+..+..
T Consensus 32 Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~--------- 102 (999)
T 4f7z_A 32 RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS--------- 102 (999)
T ss_dssp CCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS---------
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC---------
Confidence 43333344467899999999999999999999999999999999999999999999999999999975321
Q ss_pred ccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhh
Q 042233 318 KRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQL 388 (392)
Q Consensus 318 ~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~ 388 (392)
..+.+.+++.+.+|++||| +++. ..+|++|++|.++|++++|++++|..++++||+..
T Consensus 103 ---~~~~~~~v~~l~~G~sFGE-all~---------n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 103 ---SHQDAVTICTLGIGTAFGE-SILD---------NTPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp ---CTTSCEEEEEEETTCEECG-GGGG---------TCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ---CCCCceeEEEecCCcchhh-hhcc---------CCCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 1234567889999999999 6643 23489999999999999999999999999999864
No 44
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.50 E-value=9.5e-14 Score=128.27 Aligned_cols=111 Identities=14% Similarity=0.200 Sum_probs=94.7
Q ss_pred ccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCe
Q 042233 257 RKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDF 336 (392)
Q Consensus 257 ~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~ 336 (392)
..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+. ++++.++..+.+|++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~--------------~G~e~~~~~~~~G~~ 120 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDE--------------EGKEMILSYLNQGDF 120 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECT--------------TCCEEEEEEEETTCE
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECC--------------CCCEEEEEEcCCCCE
Confidence 458999999999999999999999999999999999999999999997542 234568889999999
Q ss_pred echhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 337 YGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 337 FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
||+.+++. +.+++.++++|.++|+++.|++++|.++++++|++..
T Consensus 121 ~Ge~~~~~--------~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~ 165 (260)
T 3kcc_A 121 IGELGLFE--------EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM 165 (260)
T ss_dssp ESCTTTTS--------TTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred EeehHHhC--------CCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHH
Confidence 99998742 2224778999999999999999999999999998864
No 45
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.50 E-value=7.9e-14 Score=139.58 Aligned_cols=119 Identities=13% Similarity=0.192 Sum_probs=103.2
Q ss_pred HHHHHHhhcccccccCcHHHHHHHhhhcce-eeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccC
Q 042233 244 ELCWNLLKKVQGFRKLNEVTLDALCDCVKP-TFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDG 322 (392)
Q Consensus 244 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~-~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~ 322 (392)
+...+.++++|+|.+++++.+..++..++. +.|.+|++|+++||.++.+|||.+|.|+++..+.
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~--------------- 397 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK--------------- 397 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT---------------
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC---------------
Confidence 344678999999999999999999999985 4899999999999999999999999999987421
Q ss_pred ccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcc-eEEEEEecHHHHHHHHHHcHHhhc
Q 042233 323 KNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALT-NVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 323 ~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~-~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
.++..+.+|++||+.+++. ..+|.++++|.+ +|+++.|++++|.+++.++|++..
T Consensus 398 ---~~~~~l~~G~~fGe~~ll~---------~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~ 453 (469)
T 1o7f_A 398 ---GVVCTLHEGDDFGKLALVN---------DAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTV 453 (469)
T ss_dssp ---EEEEEEETTCEECGGGGTC---------CSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC--
T ss_pred ---eeEEEecCCCEEEEehhhc---------CCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHH
Confidence 2567899999999998842 235789999998 799999999999999999998754
No 46
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.49 E-value=4.1e-14 Score=127.01 Aligned_cols=111 Identities=13% Similarity=0.167 Sum_probs=99.2
Q ss_pred HHhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccc
Q 042233 248 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRK 327 (392)
Q Consensus 248 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (392)
.+|+++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++... ++++.+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---------------~G~~~~ 68 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAY---------------EDKEFT 68 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEEC---------------SSCEEE
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECC---------------CCCEEE
Confidence 45788999999999999999999999999999999999999999999999999996332 234577
Q ss_pred cccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 328 EDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 328 i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
+..+.+|++||+. +.++++|.++|+++.|++++|.++++++|++..
T Consensus 69 ~~~~~~G~~~G~~----------------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 114 (220)
T 2fmy_A 69 LAILEAGDIFCTH----------------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSL 114 (220)
T ss_dssp EEEEETTCEEESC----------------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred EEEcCCCCEeCCc----------------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence 8899999999991 457899999999999999999999999998754
No 47
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.49 E-value=6.8e-14 Score=125.14 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=92.7
Q ss_pred ccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccccccccc
Q 042233 253 VQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQ 332 (392)
Q Consensus 253 i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 332 (392)
-|.|+..++.....+...++.+.|.+|++|+++|++++.+|||.+|.|+++..+. ++++.++..+.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~--------------~G~~~~~~~~~ 69 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSE--------------NGKTLEIDEIK 69 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECT--------------TSCEEEEEEEC
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECC--------------CCCEEEEEEec
Confidence 4778888899999999999999999999999999999999999999999997542 23457788999
Q ss_pred CCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhh
Q 042233 333 DGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQL 388 (392)
Q Consensus 333 ~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~ 388 (392)
+|++||+.+++. +.+++.++++|.++|+++.|++++|.++++++|++.
T Consensus 70 ~G~~~G~~~~~~--------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 117 (213)
T 1o5l_A 70 PVQIIASGFIFS--------SEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELL 117 (213)
T ss_dssp SSEESSGGGTTS--------SSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHH
T ss_pred CCCEeeeHHHhc--------CCCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHH
Confidence 999999998742 222467899999999999999999999999999985
No 48
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.48 E-value=3.2e-14 Score=127.99 Aligned_cols=110 Identities=11% Similarity=0.111 Sum_probs=97.4
Q ss_pred HhhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccccc
Q 042233 249 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKE 328 (392)
Q Consensus 249 ~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i 328 (392)
+|+++|+|+.++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++...+ +++.++
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~---------------G~~~~~ 65 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGE---------------EREISL 65 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEET---------------TEEEEE
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCC---------------CCEEEE
Confidence 36789999999999999999999999999999999999999999999999999973222 345678
Q ss_pred ccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 329 DLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 329 ~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
..+.+|++|| . ++.++++|.++|+++.|++++|.++++++|++..
T Consensus 66 ~~~~~G~~fG-~---------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 110 (222)
T 1ft9_A 66 FYLTSGDMFC-M---------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAW 110 (222)
T ss_dssp EEEETTCEEE-S---------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHH
T ss_pred EEcCCCCEec-C---------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHH
Confidence 8999999999 1 2568999999999999999999999999998754
No 49
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.47 E-value=1.9e-13 Score=123.47 Aligned_cols=56 Identities=14% Similarity=0.309 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKL 182 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~ 182 (392)
.|..|+||+++||||+||||++|.|..+++++++.|++|.+++|+.+|.+++.+++
T Consensus 165 ~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 165 SVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999998865
No 50
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.44 E-value=4e-13 Score=113.95 Aligned_cols=58 Identities=7% Similarity=0.170 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 126 QKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 126 ~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
..|..|+||+++|||||||||++|.|..+++++++.+++|.+++++.++.+++.+.+.
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~ 140 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGR 140 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999999999999888654
No 51
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.43 E-value=1.9e-13 Score=125.19 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=98.5
Q ss_pred hhcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccc
Q 042233 250 LKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKED 329 (392)
Q Consensus 250 l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 329 (392)
+.++..+..+|++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+. ++++.++.
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~--------------~G~~~~~~ 76 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFE--------------DGSEKLLY 76 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECT--------------TSCEEEEE
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECC--------------CCCEEEEE
Confidence 4444445889999999999999999999999999999999999999999999997642 23457888
Q ss_pred cccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 330 LLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 330 ~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
.+.+|++||+ .+ ... +.++++|.++|+++.|++++|.++++++|++..
T Consensus 77 ~~~~G~~~G~-~l----------~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 124 (250)
T 3e6c_C 77 YAGGNSLIGK-LY----------PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIF 124 (250)
T ss_dssp EECTTCEECC-CS----------CCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHH
T ss_pred EecCCCEEee-ec----------CCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHH
Confidence 9999999999 33 123 678999999999999999999999999998754
No 52
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.42 E-value=9.7e-13 Score=107.25 Aligned_cols=57 Identities=9% Similarity=0.202 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
.|..|+||++.|+|||||||++|.|..+++++++.+++|..++++.+|.+++.+.+.
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999999999999999999988765
No 53
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.40 E-value=6.1e-13 Score=139.11 Aligned_cols=133 Identities=14% Similarity=0.203 Sum_probs=110.2
Q ss_pred HHHhhCcHHHHHHHHHHHHHHHhhcccccccCcHHHHHHHhhhcc-eeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEec
Q 042233 228 NLLNNLPNELRRELKRELCWNLLKKVQGFRKLNEVTLDALCDCVK-PTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFK 306 (392)
Q Consensus 228 ~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~-~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~ 306 (392)
.++...| ..|.+-..+...+.++++++|++++++.+..++..+. .+.|++|++|+++||.++.+|||.+|.|+++..+
T Consensus 13 ~iL~k~p-~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g 91 (694)
T 3cf6_E 13 MILRKPP-GQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG 91 (694)
T ss_dssp HHHHSCG-GGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT
T ss_pred HHHcCCh-hhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC
Confidence 3443333 3344444445577899999999999999999999998 7899999999999999999999999999998742
Q ss_pred CCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcc-eEEEEEecHHHHHHHHHHcH
Q 042233 307 DIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALT-NVDAFMLMADDLKIVFNDMM 385 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~-~~~l~~L~~~~f~~ll~~~P 385 (392)
. .++..+.+|++||+.+++. ..++.++++|.+ +|+++.|++++|.++++++|
T Consensus 92 ~------------------~il~~l~~Gd~fGe~al~~---------~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p 144 (694)
T 3cf6_E 92 K------------------GVVCTLHEGDDFGKLALVN---------DAPRAASIVLREDNCHFLRVDKEDFNRILRDVE 144 (694)
T ss_dssp T------------------EEEEEEETTCEECHHHHHH---------TCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTC
T ss_pred C------------------EEEEEeCCCCEeehHHHhC---------CCCceEEEEEeeCceEEEEEeHHHHHHHHHHCH
Confidence 1 3567999999999998853 124678999999 59999999999999999999
Q ss_pred Hhh
Q 042233 386 NQL 388 (392)
Q Consensus 386 ~~~ 388 (392)
++.
T Consensus 145 ~l~ 147 (694)
T 3cf6_E 145 ANT 147 (694)
T ss_dssp CCC
T ss_pred HHH
Confidence 873
No 54
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.39 E-value=1.3e-13 Score=109.08 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
.|..|+||++.|+|||||||++|.|..+++++++.+++|..++++.++.+.+.+.+.
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 96 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRR 96 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999887665
No 55
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.38 E-value=3.8e-12 Score=99.35 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
|..|+||+++|+|||||||+.|.|..+++++++.+++|..++++.++.++..++..
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88999999999999999999999999999999999999999999999999877643
No 56
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.37 E-value=3.2e-12 Score=116.58 Aligned_cols=107 Identities=11% Similarity=0.155 Sum_probs=91.8
Q ss_pred HHHHHHHhhhcc---eeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCee
Q 042233 261 EVTLDALCDCVK---PTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFY 337 (392)
Q Consensus 261 ~~~l~~l~~~l~---~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~F 337 (392)
+++++.+..... .+.|++|++|+.+|++++.+|||.+|.|+++..+. ++++.++..+.+|++|
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~--------------~G~~~~l~~~~~g~~~ 95 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYE--------------AGEEITVALLRENSVF 95 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECT--------------TCCEEEEEEECTTCEE
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECC--------------CCCEEEEEEecCCCEE
Confidence 678888888888 99999999999999999999999999999997542 2345788899999999
Q ss_pred chhhhhhhhccCCCCCCC-CcceeEEEcceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 338 GEELIDWALRDRFSFDIP-KSNRTIQALTNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 338 Ge~~ll~~l~~~~~~~~~-~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
|+.+++. +.+ .+.++++|.++|+++.|++++|.++++++|++..
T Consensus 96 G~~~~~~--------~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 140 (243)
T 3la7_A 96 GVLSLLT--------GNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSM 140 (243)
T ss_dssp SCHHHHS--------SCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHH
T ss_pred cchHHhC--------CCCCcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHH
Confidence 9998752 112 2457899999999999999999999999999764
No 57
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.36 E-value=3.5e-12 Score=102.58 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++.++..
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999877544
No 58
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.35 E-value=6e-12 Score=114.35 Aligned_cols=110 Identities=12% Similarity=0.203 Sum_probs=89.3
Q ss_pred ccCcHHHHHHHhh--hcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCC
Q 042233 257 RKLNEVTLDALCD--CVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDG 334 (392)
Q Consensus 257 ~~~s~~~l~~l~~--~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G 334 (392)
++++++.++.+.. .++.+.|.+|++|+++||+++.+|||.+|.|+++..+. ++++.++..+ +|
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~--------------~G~e~~~~~~-~G 66 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISE--------------NGTIMNLQYY-KG 66 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECT--------------TSCEEEEEEE-ES
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECC--------------CCCEEEEEEc-CC
Confidence 3678888998885 59999999999999999999999999999999997542 2345677788 99
Q ss_pred CeechhhhhhhhccCCCCCCCC-cceeEEEc-ceEEEEEecHHHHHHHHHHcHHhhc
Q 042233 335 DFYGEELIDWALRDRFSFDIPK-SNRTIQAL-TNVDAFMLMADDLKIVFNDMMNQLG 389 (392)
Q Consensus 335 ~~FGe~~ll~~l~~~~~~~~~~-r~~tv~A~-~~~~l~~L~~~~f~~ll~~~P~~~~ 389 (392)
++||+.+++. +.++ +..++.|. ++|+++.|++++|.++++++|++..
T Consensus 67 ~~~Ge~~~~~--------~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~ 115 (238)
T 2bgc_A 67 AFVIMSGFID--------TETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFF 115 (238)
T ss_dssp SEEEESBCTT--------TCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred CEecchhhhc--------CCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHH
Confidence 9999998742 1111 14567777 5999999999999999999998754
No 59
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.35 E-value=5.3e-12 Score=137.81 Aligned_cols=116 Identities=13% Similarity=0.173 Sum_probs=100.0
Q ss_pred HHHHHHhhcccccccCcHHHHHHHhhhcceee-eCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccC
Q 042233 244 ELCWNLLKKVQGFRKLNEVTLDALCDCVKPTF-FTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDG 322 (392)
Q Consensus 244 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~-~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~ 322 (392)
+...+.+.++|.|++++...++.|+..+.... +.+|++|+++||.++.+|||.+|.|+|+...+
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~--------------- 397 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK--------------- 397 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTT---------------
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCC---------------
Confidence 44567899999999999999999999999765 57799999999999999999999999986432
Q ss_pred ccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcce-EEEEEecHHHHHHHHHHcHH
Q 042233 323 KNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTN-VDAFMLMADDLKIVFNDMMN 386 (392)
Q Consensus 323 ~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~-~~l~~L~~~~f~~ll~~~P~ 386 (392)
..+..+++||+|||.+++. ..+|.+||+|.++ |++++|+|++|.+++.+-.+
T Consensus 398 ---~~v~~L~~Gd~FGElALL~---------~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~e~ 450 (999)
T 4f7z_A 398 ---GVVCTLHEGDDFGKLALVN---------DAPRAASIVLREDNCHFLRVDKEDGNRILRDVEA 450 (999)
T ss_dssp ---EEEEEEETTCEECGGGGTC---------SCBCSSEEEESSSSEEEEEEEHHHHHHHHHHHHH
T ss_pred ---cceEEecCCCcccchhhcc---------CCCeeEEEEEecCceEEEEeeHHHHHHHHhHHHH
Confidence 3567899999999999842 3458899999985 99999999999999987543
No 60
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.33 E-value=1.4e-11 Score=92.97 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYL 180 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il 180 (392)
|..|+||+++|+||+||||+.|.|..+++++++.+++|..++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999998865
No 61
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.24 E-value=1.7e-11 Score=115.13 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=83.8
Q ss_pred cceeeeccCCcchhhhhHHhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHhccCCCCCCCccccc
Q 042233 3 GTLLIETMGGPKICGFTIRSLRKHATATWARFAFNLF-VYLQAANVFGGLWYFMAIERQTECWTKACINYTGRSHCSFNC 81 (392)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~-~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (392)
|..=|..-|.|+.. ++.+.+......-|..++..++ +++++..++|++|+.++- .
T Consensus 19 G~~nv~~~~~~~~~-~l~d~~~~~l~~~~~~ll~~~~~~~~~~~l~fa~ly~~~~~--~--------------------- 74 (301)
T 1xl4_A 19 GSSNITRLGLEKRG-WLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGD--V--------------------- 74 (301)
T ss_dssp SCBCCEESSCCCCC-SSCSSTTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCS--C---------------------
T ss_pred CcEEEEECCcchhH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--c---------------------
Confidence 44445555666543 4555555555666776665444 445566889999776640 0
Q ss_pred CCCCcccchhccccCCCCCCCCcccccceeccccccccCCcchHHHHHHHHHHHHHhhcccccccccCCChhhHHHHHHH
Q 042233 82 HDNLEDYTFLNEFCPMKTRNVTIHDFGIFHGALESGILEGKNFLQKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILV 161 (392)
Q Consensus 82 ~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~ 161 (392)
+.. +....|..|+|||+.|||||||||++|.+...++++++.
T Consensus 75 ---------~~~-----------------------------~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~ 116 (301)
T 1xl4_A 75 ---------IEN-----------------------------ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLE 116 (301)
T ss_dssp ---------STT-----------------------------SCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHH
T ss_pred ---------cCC-----------------------------CCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHH
Confidence 000 001238899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042233 162 VSSGFLLFALLIGNMQRYLK 181 (392)
Q Consensus 162 ~i~g~~~~a~iig~i~~il~ 181 (392)
+++|.+++|+++|.+.+.+.
T Consensus 117 ~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 117 ALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987776553
No 62
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.22 E-value=3.2e-11 Score=121.81 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 126 QKILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 126 ~~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
..|..|+||++.|||||||||+.|.|..+++++++++++|++++++.++.+.+.+...
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~ 431 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYF 431 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488999999999999999999999999999999999999999999999998877766
No 63
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.16 E-value=2e-11 Score=115.83 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
|..|+||++.|+|||||||++|.+...++++++.+++|.+++|+++|.+.+.+...
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999888766543
No 64
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.13 E-value=9.5e-11 Score=102.96 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=69.6
Q ss_pred eeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCCC
Q 042233 274 TFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFD 353 (392)
Q Consensus 274 ~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~ 353 (392)
+.|++|++|+++||+++.+|||.+|.|+++..+. ++++.++..+.+|++||+ +++.
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~--------------~g~~~~~~~~~~G~~~Ge-~~~~--------- 57 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLP--------------DGRLITLRHVLPGDYFGE-EALE--------- 57 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECT--------------TSCEEEEEEECTTCEECG-GGGT---------
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECC--------------CCCEEEEEEecCCCEech-hhhC---------
Confidence 5789999999999999999999999999997542 234567889999999999 8842
Q ss_pred CCCcceeEEEcceEEEEEecHHHHH
Q 042233 354 IPKSNRTIQALTNVDAFMLMADDLK 378 (392)
Q Consensus 354 ~~~r~~tv~A~~~~~l~~L~~~~f~ 378 (392)
..++.++++|.++|+++.|++++|.
T Consensus 58 ~~~~~~~~~A~~~~~v~~i~~~~~~ 82 (195)
T 3b02_A 58 GKAYRYTAEAMTEAVVQGLEPRAMD 82 (195)
T ss_dssp CSBCSSEEEESSSEEEEEECGGGCC
T ss_pred CCCceeEEEECCcEEEEEEcHHHcC
Confidence 2346789999999999999999986
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.10 E-value=3.1e-12 Score=110.09 Aligned_cols=57 Identities=9% Similarity=0.217 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
.|..|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.+++.+.+.
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999998877544
No 66
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.04 E-value=4.6e-10 Score=105.03 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
.|..|+||+++|+|||||||++|.|...++++++.+++|..+++++++.+++.+.+.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999888665
No 67
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.00 E-value=1.2e-09 Score=103.30 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
.|..|+|||+.|||||||||+.|.+...++++++.+++|.+++|+++|.+.+.+...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999999999999999999999999999999999999988776543
No 68
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.99 E-value=4.8e-10 Score=98.88 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=69.8
Q ss_pred HhhhcceeeeCCCCEEEecCCCC--CeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhh
Q 042233 267 LCDCVKPTFFTEHTHLIREGDPI--DEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDW 344 (392)
Q Consensus 267 l~~~l~~~~~~~ge~I~~~gd~~--~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~ 344 (392)
|...++.+.|++|++|+++||++ +.+|||.+|.|+++..+. ++++.++..+.+|++||+ +++.
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~--------------~G~~~~~~~~~~g~~~G~-~~l~ 65 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDE--------------EGNALTLRLVRPGGFFGE-EALF 65 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECT--------------TSCEEEEEEECTTCEECT-HHHH
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECC--------------CCcEEEEEEecCCCEeee-hhcC
Confidence 34668899999999999999999 999999999999987542 234577889999999999 7643
Q ss_pred hhccCCCCCCCCcceeEEEcceEEEEEecHHHHH
Q 042233 345 ALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLK 378 (392)
Q Consensus 345 ~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~ 378 (392)
..++.++++|.++|+++.| +++|.
T Consensus 66 ---------~~~~~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 66 ---------GQERIYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp ---------TCCBCSEEEESSCEEEEEC-CSSCC
T ss_pred ---------CCCcceEEEEcccEEEEEE-hHhcC
Confidence 1236789999999999999 88775
No 69
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.95 E-value=7.7e-09 Score=97.95 Aligned_cols=56 Identities=13% Similarity=0.258 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhcccccccccCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSG--NVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~--~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
+..+||||+.|+|||||||+.|. +..-++++++.+++|.++.|+.+|.+..-+...
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 67899999999999999999996 678899999999999999999998776655443
No 70
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.93 E-value=3.7e-09 Score=108.28 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGN-MQRYLKL 182 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~-i~~il~~ 182 (392)
|..|+||+++|||||||||++|.|..+++++++++++|.+++++.++. +.+.+..
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 107 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLA 107 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999998 5554433
No 71
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.81 E-value=3.6e-08 Score=93.49 Aligned_cols=132 Identities=11% Similarity=0.244 Sum_probs=83.3
Q ss_pred ceeeeccCCcch-hhhhHHhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHhccCCCCCCCccccc
Q 042233 4 TLLIETMGGPKI-CGFTIRSLRKHATATWARFAFNL-FVYLQAANVFGGLWYFMAIERQTECWTKACINYTGRSHCSFNC 81 (392)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~l-~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (392)
..-++.-++|.. ..++.+.+-.+...-|..++..+ +.+++..=++|.+||++|....+ ++
T Consensus 16 ~~nv~~~~~~~~~~~~l~Dif~tlv~l~Wr~~ll~f~~~y~~swl~Fally~~ia~~~gd-----------------l~- 77 (343)
T 3spc_A 16 QCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALIHGD-----------------LE- 77 (343)
T ss_dssp CBCCCCCSCCCCC-----CHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG-----------------GG-
T ss_pred cEEEEecCCCccchhHHHHHHHHHeeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------------cc-
Confidence 333444455542 34455556656666787655544 34555667789999999843221 00
Q ss_pred CCCCcccchhccccCCCCCCCCcccccceeccccccccCCcchHHHHHHHHHHHHHhhcccccccccC--CChhhHHHHH
Q 042233 82 HDNLEDYTFLNEFCPMKTRNVTIHDFGIFHGALESGILEGKNFLQKILHCFIWGLQNLSNLSHNLQTS--GNVEENIFVI 159 (392)
Q Consensus 82 ~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~Yi~s~Ywa~~t~ttvGyGdi~p--~~~~E~~~~i 159 (392)
.....++|-. |. .+ ...+..+||||+.|+|||||||+.| .+..-++++.
T Consensus 78 -~~~~~~~~~~--Cv-----------------------~~---~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~ 128 (343)
T 3spc_A 78 -NPGGDDTFKP--CV-----------------------LQ---VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVV 128 (343)
T ss_dssp -CTTCCSSCCC--SE-----------------------ET---CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHH
T ss_pred -cccccccccc--cc-----------------------cc---cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHH
Confidence 0011122311 11 11 1237889999999999999999986 4889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042233 160 LVVSSGFLLFALLIGNMQRYLKL 182 (392)
Q Consensus 160 ~~~i~g~~~~a~iig~i~~il~~ 182 (392)
+.+++|.++.|...|.+..-+..
T Consensus 129 ~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 129 VQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999877665543
No 72
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.80 E-value=8.7e-09 Score=94.99 Aligned_cols=57 Identities=11% Similarity=0.125 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
.|..|+||+++|+|||||||++|.|...++++++.+++|+.+++++++.+++.+...
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~ 149 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVH 149 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999998766543
No 73
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.78 E-value=2.7e-09 Score=99.85 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhcccccccccCCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSGNVEEN------IFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~------~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
|+.|+||+++|+|||||||++|.+...+ +++++++++|..+++++++.+++.+...
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~ 286 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVV 286 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999887 5999999999999999999988877654
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.71 E-value=1.4e-08 Score=93.62 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhcccccccccCCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSGNVE-------ENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~~~~-------E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
|+.|+||++.|+|||||||+.|.+.. -++++++++++|.++++++++.+.+++...
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999885 499999999999999999999999877654
No 75
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.48 E-value=8.3e-09 Score=98.69 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 128 ILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 128 Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
|..|+||+++|+||+||||+.|.|..+++++++++++|.++++++++.+.+.+.+.
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999998877654
No 76
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.60 E-value=0.00011 Score=68.19 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhhcccccc-ccc-CCChhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042233 125 LQKILHCFIWGLQNLSNLSHN-LQT-SGNVEE----NIFVILVVSSGFLLFALLIGNMQRYLKLG 183 (392)
Q Consensus 125 ~~~Yi~s~Ywa~~t~ttvGyG-di~-p~~~~E----~~~~i~~~i~g~~~~a~iig~i~~il~~~ 183 (392)
+..+..|++|++.|+||+||| |+. |.+..- ..+++++++.|.++.+..++.+.+-+.+.
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~ 242 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAIL 242 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455889999999999999999 985 765544 78889999999999999998888766554
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=84.51 E-value=6.3 Score=34.34 Aligned_cols=21 Identities=19% Similarity=-0.040 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhcccccccc
Q 042233 127 KILHCFIWGLQNLSNLSHNLQ 147 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi 147 (392)
....|++|.+.++|+.|++|+
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i 185 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETV 185 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHH
T ss_pred CHHHHHHHHHHHHccCCHHHH
Confidence 477899999999999999997
No 78
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=79.41 E-value=6.5 Score=30.11 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=45.3
Q ss_pred cceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCC
Q 042233 271 VKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRF 350 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~ 350 (392)
+....+.||..+-..--..+++++|++|.+++...+. . ..+.+||.+=-..
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-~-------------------~~l~~Gd~i~ip~--------- 88 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGA-Q-------------------RRLHQGDLLYLGA--------- 88 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTE-E-------------------EEECTTEEEEECT---------
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEECCE-E-------------------EEECCCCEEEECC---------
Confidence 4455678888876655566799999999999987432 1 2789998764331
Q ss_pred CCCCCCcceeEEEcceEEEEE
Q 042233 351 SFDIPKSNRTIQALTNVDAFM 371 (392)
Q Consensus 351 ~~~~~~r~~tv~A~~~~~l~~ 371 (392)
.....+++.+++.++.
T Consensus 89 -----~~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 89 -----GAAHDVNAITNTSLLV 104 (114)
T ss_dssp -----TCCEEEEESSSEEEEE
T ss_pred -----CCcEEEEeCCCcEEEE
Confidence 1235677777766443
No 79
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=77.28 E-value=8.2 Score=33.66 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=51.1
Q ss_pred cceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCC
Q 042233 271 VKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRF 350 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~ 350 (392)
+....+.||+.+-..--+.+.+.+|++|.+++...+. . ..+.+||++=-.
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~-~-------------------~~l~~Gd~~~~p---------- 88 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENN-K-------------------KTISNGDFLEIT---------- 88 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSC-E-------------------EEEETTEEEEEC----------
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCE-E-------------------EEECCCCEEEEC----------
Confidence 4456689999998777788999999999999988532 1 279999876322
Q ss_pred CCCCCCcceeEEEcceEEEEEe
Q 042233 351 SFDIPKSNRTIQALTNVDAFML 372 (392)
Q Consensus 351 ~~~~~~r~~tv~A~~~~~l~~L 372 (392)
+.....++|.+++.++.+
T Consensus 89 ----~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 89 ----ANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp ----SSCCEEEEESSSEEEEEE
T ss_pred ----CCCCEEEEECCCcEEEEE
Confidence 113467899999998876
No 80
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=74.57 E-value=3.6 Score=43.09 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhcccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhhc
Q 042233 127 KILHCFIWGLQNLSNLSHNLQTSGNVEENIFVILVVSSGFLLFALLIGNMQRYLKLGKEMTLKPREIEEWQ 197 (392)
Q Consensus 127 ~Yi~s~Ywa~~t~ttvGyGdi~p~~~~E~~~~i~~~i~g~~~~a~iig~i~~il~~~~~~~~~~~~l~~~m 197 (392)
....++++++.+++..| ++..|.+...+++.+++++++.++.+...++++++++.- .+...++.+++..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~-~~~~~I~s~~dL~ 631 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVE-RMVSPIESAEDLS 631 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCSSHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc-ccCCCCCCHHHHh
Confidence 45678999999999888 688999999999999999999999999999999988763 3333444444433
No 81
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=72.54 E-value=8.6 Score=29.07 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=21.4
Q ss_pred eCCCCEEEecCCCCCeEEEEEeeeEEEEEe
Q 042233 276 FTEHTHLIREGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 276 ~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~ 305 (392)
+.||..+-...-..+++++|++|.+.+...
T Consensus 45 ~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~ 74 (114)
T 2ozj_A 45 FADGESVSEEEYFGDTLYLILQGEAVITFD 74 (114)
T ss_dssp EETTSSCCCBCCSSCEEEEEEEEEEEEEET
T ss_pred ECCCCccccEECCCCeEEEEEeCEEEEEEC
Confidence 456655443344567899999999998874
No 82
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=72.46 E-value=13 Score=27.89 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=43.3
Q ss_pred cceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCC
Q 042233 271 VKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRF 350 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~ 350 (392)
+....+.||..+-..--...++++|++|.+.+...+. . ..+.+|+.+=-.
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~-------------------~~l~~Gd~~~ip---------- 91 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQE-T-------------------YRVAEGQTIVMP---------- 91 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTE-E-------------------EEEETTCEEEEC----------
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCE-E-------------------EEECCCCEEEEC----------
Confidence 3445577887765443345789999999999886331 1 278999987332
Q ss_pred CCCCCCcceeEEEcceEEEEEe
Q 042233 351 SFDIPKSNRTIQALTNVDAFML 372 (392)
Q Consensus 351 ~~~~~~r~~tv~A~~~~~l~~L 372 (392)
+.....+++.+++.++.+
T Consensus 92 ----~~~~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 92 ----AGIPHALYAVEAFQMLLV 109 (115)
T ss_dssp ----TTSCEEEEESSCEEEEEE
T ss_pred ----CCCCEEEEECCCceEEEE
Confidence 112345677677766554
No 83
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=67.33 E-value=18 Score=27.12 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=43.0
Q ss_pred cceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCC
Q 042233 271 VKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRF 350 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~ 350 (392)
+....+.||..+-..--...++++|++|.+.+...+. . ..+.+|+.+=-.
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~-------------------~~l~~Gd~~~ip---------- 85 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGV-I-------------------KVLTAGDSFFVP---------- 85 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEETTE-E-------------------EEECTTCEEEEC----------
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEECCE-E-------------------EEeCCCCEEEEC----------
Confidence 3445567887654333346789999999999887321 1 279999985322
Q ss_pred CCCCCCcceeEEEcceEEEEEe
Q 042233 351 SFDIPKSNRTIQALTNVDAFML 372 (392)
Q Consensus 351 ~~~~~~r~~tv~A~~~~~l~~L 372 (392)
+.....+++.+++.++.+
T Consensus 86 ----~~~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 86 ----PHVDHGAVCPTGGILIDT 103 (116)
T ss_dssp ----TTCCEEEEESSCEEEEEE
T ss_pred ----cCCceeeEeCCCcEEEEE
Confidence 112345677777776665
No 84
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=66.54 E-value=19 Score=27.59 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=47.9
Q ss_pred cceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCC
Q 042233 271 VKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRF 350 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~ 350 (392)
+....+.||..+-..--...++++|++|.+.+...+. . ..+.+|+.+=...
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~-------------------~~l~~Gd~~~ip~--------- 93 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEE-T-------------------RVLRPGMAYTIPG--------- 93 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTE-E-------------------EEECTTEEEEECT---------
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCE-E-------------------EEeCCCCEEEECC---------
Confidence 3445577887765444445789999999999987432 1 2789998763321
Q ss_pred CCCCCCcceeEEEcce-EEEE---EecHHHHHHHHHH
Q 042233 351 SFDIPKSNRTIQALTN-VDAF---MLMADDLKIVFND 383 (392)
Q Consensus 351 ~~~~~~r~~tv~A~~~-~~l~---~L~~~~f~~ll~~ 383 (392)
.....+++.+. +.++ .-.+++|.+.+++
T Consensus 94 -----~~~H~~~~~~~~~~~l~v~~p~~~d~~~~~~~ 125 (126)
T 4e2g_A 94 -----GVRHRARTFEDGCLVLDIFSPPREDYARMAED 125 (126)
T ss_dssp -----TCCEEEECCTTCEEEEEEEESCCHHHHHHHHH
T ss_pred -----CCcEEeEECCCCEEEEEEECCCCcchhhhhcc
Confidence 12244555554 4433 3356777766543
No 85
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=65.21 E-value=8.9 Score=29.79 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=32.9
Q ss_pred eeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeech
Q 042233 273 PTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339 (392)
Q Consensus 273 ~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe 339 (392)
...+.||..+-.. ...+++++|++|++.+... +.. ..+++||.+--
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~-g~~-------------------~~l~~GD~v~i 89 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVSTD-GET-------------------VTAGPGEIVYM 89 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEET-TEE-------------------EEECTTCEEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEEC-CEE-------------------EEECCCCEEEE
Confidence 3456788766544 3678999999999999873 211 27999998743
No 86
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=59.36 E-value=11 Score=28.13 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=25.1
Q ss_pred cceeeeCCCCEEEec--CCC-CCeEEEEEeeeEEEEEe
Q 042233 271 VKPTFFTEHTHLIRE--GDP-IDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 271 l~~~~~~~ge~I~~~--gd~-~~~lyfI~~G~V~v~~~ 305 (392)
+....+.||..+-.. --. ..++++|++|.+.+...
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~ 60 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD 60 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC
Confidence 344567888876543 333 67899999999998874
No 87
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=58.80 E-value=12 Score=27.12 Aligned_cols=34 Identities=6% Similarity=-0.021 Sum_probs=23.8
Q ss_pred ceeeeCCCCEEEecCCC-CCeEEEEEeeeEEEEEe
Q 042233 272 KPTFFTEHTHLIREGDP-IDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 272 ~~~~~~~ge~I~~~gd~-~~~lyfI~~G~V~v~~~ 305 (392)
....+.||..+-..--. .+++++|++|.+.+...
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~ 65 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG 65 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC
Confidence 34557788776443323 35799999999998874
No 88
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=58.23 E-value=28 Score=26.02 Aligned_cols=48 Identities=13% Similarity=0.038 Sum_probs=33.1
Q ss_pred cceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeech
Q 042233 271 VKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe 339 (392)
.-.....||+.-.. -..+++++|++|.+.+...++.. ..+++||.+=-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g~~-------------------~~l~~GD~i~i 80 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDGKK-------------------YVIEKGDLVTF 80 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTCCE-------------------EEEETTCEEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEECCCCE-------------------EEECCCCEEEE
Confidence 33455677775543 34679999999999998742222 17999998743
No 89
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=54.57 E-value=14 Score=28.40 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=23.5
Q ss_pred cceeeeCCCCEEEecCCC-CCeEEEEEeeeEEEEE
Q 042233 271 VKPTFFTEHTHLIREGDP-IDEMIFVVQGKLRTYT 304 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~-~~~lyfI~~G~V~v~~ 304 (392)
+....+.||..+-..--. ..++++|++|.+.+..
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~ 75 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ 75 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE
Confidence 444567788776444333 3678999999999876
No 90
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=51.75 E-value=9.5 Score=29.71 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=29.7
Q ss_pred CCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechh
Q 042233 277 TEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEE 340 (392)
Q Consensus 277 ~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~ 340 (392)
.||..-... +..++++.|++|.+.+...++.. ..+++||.|--.
T Consensus 50 tPG~~~~~~-~~~~E~~~iLeG~~~lt~ddG~~-------------------~~l~aGD~~~~P 93 (116)
T 3es4_A 50 EPGIYNYAG-RDLEETFVVVEGEALYSQADADP-------------------VKIGPGSIVSIA 93 (116)
T ss_dssp CSEEEEECC-CSEEEEEEEEECCEEEEETTCCC-------------------EEECTTEEEEEC
T ss_pred CCceeECee-CCCcEEEEEEEeEEEEEeCCCeE-------------------EEECCCCEEEEC
Confidence 444443333 33458999999999998765432 279999987544
No 91
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=50.57 E-value=32 Score=29.70 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=45.6
Q ss_pred cceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCC
Q 042233 271 VKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRF 350 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~ 350 (392)
+....+.||..+-..--+.+.+++|++|.+++...+. . ..+.+||.+=-.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~-~-------------------~~l~~Gd~i~ip~--------- 205 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGK-P-------------------FIVKKGESAVLPA--------- 205 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTE-E-------------------EEEETTEEEEECT---------
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCE-E-------------------EEECCCCEEEECC---------
Confidence 4456688998876555556789999999999987432 1 1789999863331
Q ss_pred CCCCCCcceeEEE-cceEEEEE
Q 042233 351 SFDIPKSNRTIQA-LTNVDAFM 371 (392)
Q Consensus 351 ~~~~~~r~~tv~A-~~~~~l~~ 371 (392)
.....+++ .+.+.++.
T Consensus 206 -----~~~H~~~~~~~~~~~ll 222 (227)
T 3rns_A 206 -----NIPHAVEAETENFKMLL 222 (227)
T ss_dssp -----TSCEEEECCSSCEEEEE
T ss_pred -----CCcEEEEeCCCCEEEEE
Confidence 12356777 77776553
No 92
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=50.39 E-value=26 Score=25.29 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=33.4
Q ss_pred CeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEEE
Q 042233 290 DEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDA 369 (392)
Q Consensus 290 ~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l 369 (392)
.++++|++|.+.+...+. . ..+.+|+.+=-. +.....+.+.+++.+
T Consensus 51 ~e~~~v~~G~~~~~~~~~-~-------------------~~l~~Gd~~~ip--------------~~~~H~~~~~~~~~~ 96 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFRDQ-N-------------------ITLQAGEMYVIP--------------KGVEHKPMAKEECKI 96 (102)
T ss_dssp CEEEEEEESEEEEECSSC-E-------------------EEEETTEEEEEC--------------TTCCBEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEECCE-E-------------------EEEcCCCEEEEC--------------CCCeEeeEcCCCCEE
Confidence 789999999999876432 1 168999876322 112245666678888
Q ss_pred EEec
Q 042233 370 FMLM 373 (392)
Q Consensus 370 ~~L~ 373 (392)
+.++
T Consensus 97 l~i~ 100 (102)
T 3d82_A 97 MIIE 100 (102)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 93
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=46.89 E-value=15 Score=27.93 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=25.2
Q ss_pred CCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechh
Q 042233 287 DPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEE 340 (392)
Q Consensus 287 d~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~ 340 (392)
...+++++|++|.+++...+... ...+++||.+=-.
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~------------------~~~l~~Gd~i~ip 86 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTA------------------PRVMRPGDWLHVP 86 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSS------------------CEEECTTEEEEEC
T ss_pred CCccEEEEEEeCeEEEEECCEEE------------------EEEECCCCEEEEC
Confidence 34568999999999998754320 0179999987443
No 94
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=46.05 E-value=36 Score=27.31 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=18.3
Q ss_pred ecCCCCCeEEEEEeeeEEEEEec
Q 042233 284 REGDPIDEMIFVVQGKLRTYTFK 306 (392)
Q Consensus 284 ~~gd~~~~lyfI~~G~V~v~~~~ 306 (392)
..-+..|++|+|++|.+.+...+
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd 67 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAE 67 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEE
T ss_pred ccCCCCCeEEEEEecEEEEEEec
Confidence 34456789999999999998753
No 95
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=45.13 E-value=85 Score=22.72 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=22.1
Q ss_pred eeeeCCCCEEEecCCC-CCeE-EEEEeeeEEEEEe
Q 042233 273 PTFFTEHTHLIREGDP-IDEM-IFVVQGKLRTYTF 305 (392)
Q Consensus 273 ~~~~~~ge~I~~~gd~-~~~l-yfI~~G~V~v~~~ 305 (392)
...+.||..+-..--. ..++ ++|++|.+.+...
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~ 71 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGD 71 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECG
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeC
Confidence 3456788776443322 2466 8999999998874
No 96
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=44.58 E-value=30 Score=30.03 Aligned_cols=44 Identities=14% Similarity=-0.004 Sum_probs=28.4
Q ss_pred eCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeec
Q 042233 276 FTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYG 338 (392)
Q Consensus 276 ~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FG 338 (392)
+.||..+=.-.-+.+++|+|++|.+++...++.. ..+++|+.+=
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~~-------------------~~l~pGd~v~ 182 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHLRNAPD-------------------LMLEPGQTRF 182 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEETTSCC-------------------EEECTTCEEE
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEECCCCE-------------------EecCCCCEEE
Confidence 3444333222345679999999999988753322 1788998763
No 97
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=43.71 E-value=32 Score=27.45 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=23.0
Q ss_pred eeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEec
Q 042233 273 PTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFK 306 (392)
Q Consensus 273 ~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~ 306 (392)
...+.||..+-..--...++++|++|.+.+...+
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~ 85 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQERG 85 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEETT
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEECC
Confidence 4456677665322223468999999999988743
No 98
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=43.57 E-value=18 Score=26.80 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=35.4
Q ss_pred CCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCCCCCCcceeEEEcceEE
Q 042233 289 IDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVD 368 (392)
Q Consensus 289 ~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~ 368 (392)
.+++++|++|.+.+...++.. ..+.+||.+=-.. + ....+++.+.+.
T Consensus 48 ~~E~~~Vl~G~~~~~~~~~~~-------------------~~l~~Gd~~~ip~-----------~---~~H~~~~~~~~~ 94 (107)
T 2i45_A 48 SDKVLFAVEGDMAVDFADGGS-------------------MTIREGEMAVVPK-----------S---VSHRPRSENGCS 94 (107)
T ss_dssp CCEEEEESSSCEEEEETTSCE-------------------EEECTTEEEEECT-----------T---CCEEEEEEEEEE
T ss_pred CCEEEEEEeCEEEEEECCCcE-------------------EEECCCCEEEECC-----------C---CcEeeEeCCCeE
Confidence 378999999999998754121 1799999863321 1 123455556788
Q ss_pred EEEecHHHH
Q 042233 369 AFMLMADDL 377 (392)
Q Consensus 369 l~~L~~~~f 377 (392)
++.++....
T Consensus 95 ~l~i~~~~~ 103 (107)
T 2i45_A 95 LVLIELSDP 103 (107)
T ss_dssp EEEEECC--
T ss_pred EEEEECCCc
Confidence 877765543
No 99
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=43.11 E-value=15 Score=28.77 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=29.1
Q ss_pred eCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechh
Q 042233 276 FTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEE 340 (392)
Q Consensus 276 ~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~ 340 (392)
..||..-....+ .+++++|++|.+.+...++.. ..+++||.+--.
T Consensus 56 ~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g~~-------------------~~l~~GD~~~ip 100 (123)
T 3bcw_A 56 STSGSFQSNTTG-YIEYCHIIEGEARLVDPDGTV-------------------HAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEECCCTT-EEEEEEEEEEEEEEECTTCCE-------------------EEEETTCEEEEC
T ss_pred ECCCceeeEcCC-CcEEEEEEEEEEEEEECCCeE-------------------EEECCCCEEEEC
Confidence 344544433222 278999999999998744321 279999987543
No 100
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=43.03 E-value=21 Score=29.34 Aligned_cols=33 Identities=12% Similarity=-0.035 Sum_probs=22.4
Q ss_pred eeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEe
Q 042233 273 PTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 273 ~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~ 305 (392)
...+.||..+-..--...++++|++|.+.+...
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~ 92 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD 92 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEET
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC
Confidence 344566665433223467899999999998874
No 101
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=42.63 E-value=17 Score=30.35 Aligned_cols=47 Identities=6% Similarity=0.001 Sum_probs=30.1
Q ss_pred ceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCee
Q 042233 272 KPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFY 337 (392)
Q Consensus 272 ~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~F 337 (392)
....+.||...-.-.-...+..+|++|++++...++.. ..+++||.+
T Consensus 82 ~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~-------------------~~L~~GDsi 128 (172)
T 3es1_A 82 RVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGAK-------------------RTVRQGGII 128 (172)
T ss_dssp EEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGCE-------------------EEECTTCEE
T ss_pred EEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCeE-------------------EEECCCCEE
Confidence 34456666543222233446889999999998753322 179999998
No 102
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=42.27 E-value=20 Score=27.67 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=21.8
Q ss_pred eeeCCCCEEEecCCCCCeEEEEEeeeEEEEEe
Q 042233 274 TFFTEHTHLIREGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 274 ~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~ 305 (392)
..+.||..+-.---...++++|++|.+.+...
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~ 84 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE 84 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEECS
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEEC
Confidence 34566655533333467899999999998864
No 103
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=41.78 E-value=26 Score=29.21 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=25.7
Q ss_pred CCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeech
Q 042233 288 PIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339 (392)
Q Consensus 288 ~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe 339 (392)
+.++++++++|.+.+...+++. ..-..+++|++|=-
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~----------------~~~v~l~eGE~f~l 89 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGR----------------RERADLKEGDIFLL 89 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTE----------------EEEEEECTTCEEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCc----------------eeeEEECCCCEEEe
Confidence 4578999999999998766331 01127999998843
No 104
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=40.77 E-value=22 Score=27.73 Aligned_cols=33 Identities=6% Similarity=-0.083 Sum_probs=22.9
Q ss_pred eeeeCCCCEEEecCCC-CCeEEEEEeeeEEEEEe
Q 042233 273 PTFFTEHTHLIREGDP-IDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 273 ~~~~~~ge~I~~~gd~-~~~lyfI~~G~V~v~~~ 305 (392)
...+.||..+-.---. ..++++|++|.+.+...
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~ 94 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN 94 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEET
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEEC
Confidence 4457788766432222 36899999999998874
No 105
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=39.22 E-value=12 Score=27.50 Aligned_cols=50 Identities=14% Similarity=0.013 Sum_probs=30.7
Q ss_pred ceeeeCCCCEEEecCCCC-CeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeech
Q 042233 272 KPTFFTEHTHLIREGDPI-DEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339 (392)
Q Consensus 272 ~~~~~~~ge~I~~~gd~~-~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe 339 (392)
....+.||...-..--.. +++++|++|.+++...++.+ ...+.+||.+=.
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~------------------~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSV------------------TSQLTRGVSYTR 71 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEE------------------EEEECTTCCEEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCE------------------EEEEcCCCEEEe
Confidence 344567776542222223 35999999999998744201 127999998743
No 106
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=39.12 E-value=9.4 Score=28.47 Aligned_cols=37 Identities=5% Similarity=-0.086 Sum_probs=25.0
Q ss_pred cceeeeCCCCEEEecC-CCCCeEEEEEeeeEEEEEecC
Q 042233 271 VKPTFFTEHTHLIREG-DPIDEMIFVVQGKLRTYTFKD 307 (392)
Q Consensus 271 l~~~~~~~ge~I~~~g-d~~~~lyfI~~G~V~v~~~~~ 307 (392)
++...+.||+-+-..- ......|+|.+|.+.+...++
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~ 56 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDG 56 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTS
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCC
Confidence 4566788888875443 334568889999999887543
No 107
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=38.45 E-value=16 Score=30.42 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=24.1
Q ss_pred CCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeech
Q 042233 288 PIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339 (392)
Q Consensus 288 ~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe 339 (392)
.++.++||++|.+++...+.. -.+.+|++|=-
T Consensus 109 ~gEE~~yVLeG~v~vtl~g~~--------------------~~L~~Gds~~i 140 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVCKNK--------------------FLSVKGSTFQI 140 (166)
T ss_dssp SEEEEEEEEESEEEEEETTEE--------------------EEEETTCEEEE
T ss_pred CceEEEEEEEeEEEEEECCEE--------------------EEEcCCCEEEE
Confidence 456799999999999984321 17999998743
No 108
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=37.75 E-value=1.2e+02 Score=22.81 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=45.6
Q ss_pred eeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCCC
Q 042233 274 TFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFD 353 (392)
Q Consensus 274 ~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~~ 353 (392)
..+.||...-..--...++++|++|.+.+...+. . -.+.+|+.+=-.. +
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~-~-------------------~~l~~Gd~~~i~~-----------~ 87 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRINDE-D-------------------FPVTKGDLIIIPL-----------D 87 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEETTE-E-------------------EEEETTCEEEECT-----------T
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEECCE-E-------------------EEECCCcEEEECC-----------C
Confidence 3455665332222345689999999999987432 1 1789998763321 1
Q ss_pred CCCcceeEEEc--ceE--EEEEecHHHHHHHHHHcHH
Q 042233 354 IPKSNRTIQAL--TNV--DAFMLMADDLKIVFNDMMN 386 (392)
Q Consensus 354 ~~~r~~tv~A~--~~~--~l~~L~~~~f~~ll~~~P~ 386 (392)
....+.+. +.+ .++.++.+-+..++.+-++
T Consensus 88 ---~~H~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~ 121 (128)
T 4i4a_A 88 ---SEHHVINNNQEDFHFYTIWWDKESTLNFLTRLEQ 121 (128)
T ss_dssp ---CCEEEEECSSSCEEEEEEEECHHHHHHHHHHHHH
T ss_pred ---CcEEeEeCCCCCEEEEEEEECHHHHHHHHHhccc
Confidence 12334443 333 3556777777777666543
No 109
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=37.39 E-value=36 Score=28.25 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=29.7
Q ss_pred eeeCCCCEEEe--cCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCee
Q 042233 274 TFFTEHTHLIR--EGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFY 337 (392)
Q Consensus 274 ~~~~~ge~I~~--~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~F 337 (392)
..+.||...-. -....+++++|++|.+.+...+. . -.+.+||.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~-~-------------------~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQ-W-------------------HELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTE-E-------------------EEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCE-E-------------------EEeCCCCEE
Confidence 44667766542 12334689999999999887431 1 179999976
No 110
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=37.36 E-value=32 Score=28.56 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=25.8
Q ss_pred cceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEe
Q 042233 271 VKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~ 305 (392)
+....+.||......-..++++++|++|++.+...
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~ 77 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLV 77 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEE
Confidence 44556788887655433457999999999988764
No 111
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=36.90 E-value=20 Score=29.27 Aligned_cols=31 Identities=10% Similarity=-0.062 Sum_probs=20.5
Q ss_pred eeCCCCEEEecCCCCCeEEEEEeeeEEEEEe
Q 042233 275 FFTEHTHLIREGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 275 ~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~ 305 (392)
.+.||..+-..--...++++|++|.+++...
T Consensus 50 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~ 80 (156)
T 3kgz_A 50 EVDEGGYSTLERHAHVHAVMIHRGHGQCLVG 80 (156)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEEEEEEEET
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEEC
Confidence 3455554432223456799999999999874
No 112
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=36.49 E-value=48 Score=26.25 Aligned_cols=34 Identities=12% Similarity=-0.045 Sum_probs=22.5
Q ss_pred eeeeCCCCEEEecC-CCCCeEEEEEeeeEEEEEec
Q 042233 273 PTFFTEHTHLIREG-DPIDEMIFVVQGKLRTYTFK 306 (392)
Q Consensus 273 ~~~~~~ge~I~~~g-d~~~~lyfI~~G~V~v~~~~ 306 (392)
...+.||..+-..- ...+++++|++|.+.+...+
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~ 81 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGH 81 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEES
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECC
Confidence 34566776543222 22458999999999998754
No 113
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=36.48 E-value=19 Score=29.70 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=20.5
Q ss_pred eeCCCCEEEecCCCCCeEEEEEeeeEEEEEe
Q 042233 275 FFTEHTHLIREGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 275 ~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~ 305 (392)
.+.||..+-..--...++++|++|.+++...
T Consensus 59 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~ 89 (166)
T 3jzv_A 59 EVGPGGHSTLERHQHAHGVMILKGRGHAMVG 89 (166)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEECEEEEET
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEEC
Confidence 4456655433223346799999999998764
No 114
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=35.55 E-value=23 Score=28.01 Aligned_cols=45 Identities=16% Similarity=0.078 Sum_probs=29.9
Q ss_pred eeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechh
Q 042233 274 TFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEE 340 (392)
Q Consensus 274 ~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~ 340 (392)
..+.||..-.. -..+++++|++|.+.+... +.. -.+++||.+--.
T Consensus 62 ~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~-g~~-------------------~~l~~GD~i~~p 106 (133)
T 2pyt_A 62 MQWDNAFFPWT--LNYDEIDMVLEGELHVRHE-GET-------------------MIAKAGDVMFIP 106 (133)
T ss_dssp EEEEEEEEEEE--CSSEEEEEEEEEEEEEEET-TEE-------------------EEEETTCEEEEC
T ss_pred EEECCCCcccc--CCCCEEEEEEECEEEEEEC-CEE-------------------EEECCCcEEEEC
Confidence 34667732222 2367999999999999874 211 179999987543
No 115
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=35.48 E-value=22 Score=29.06 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=22.3
Q ss_pred eeeeCCCCEEE--ecCCCCCeEEEEEeeeEEEEEec
Q 042233 273 PTFFTEHTHLI--REGDPIDEMIFVVQGKLRTYTFK 306 (392)
Q Consensus 273 ~~~~~~ge~I~--~~gd~~~~lyfI~~G~V~v~~~~ 306 (392)
...+.||.... ..-...+++++|++|.+++...+
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~ 82 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQ 82 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETT
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECC
Confidence 44566776442 12223368999999999998743
No 116
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=35.01 E-value=20 Score=34.27 Aligned_cols=36 Identities=6% Similarity=0.004 Sum_probs=25.0
Q ss_pred ceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecC
Q 042233 272 KPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKD 307 (392)
Q Consensus 272 ~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~ 307 (392)
....+.||+.+-..--...++|||++|+-.....++
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G 161 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDG 161 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETT
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECC
Confidence 566788888875444445589999999876644333
No 117
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=34.08 E-value=38 Score=28.29 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=39.1
Q ss_pred HHHHHHhhhcce----eeeCCCCEEEe-cCC----------CCCeEEEEEeeeEEEEEecCCccCcccCCcccccCcccc
Q 042233 262 VTLDALCDCVKP----TFFTEHTHLIR-EGD----------PIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTR 326 (392)
Q Consensus 262 ~~l~~l~~~l~~----~~~~~ge~I~~-~gd----------~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
+-+.+....+++ +....+++++. -|. +.++++++++|.+.+...+++..+ ...
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~------------~~~ 79 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAE------------PKF 79 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSS------------CEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcc------------cce
Confidence 345556666776 44434666532 222 345899999999999876633100 001
Q ss_pred ccccccCCCeech
Q 042233 327 KEDLLQDGDFYGE 339 (392)
Q Consensus 327 ~i~~l~~G~~FGe 339 (392)
.-..+++||+|=-
T Consensus 80 ~dv~i~eGdmfll 92 (176)
T 1zvf_A 80 IDIIINEGDSYLL 92 (176)
T ss_dssp EEEEECTTEEEEE
T ss_pred eeEEECCCCEEEc
Confidence 1237999998843
No 118
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=33.43 E-value=56 Score=29.27 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=41.4
Q ss_pred eeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCC
Q 042233 273 PTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSF 352 (392)
Q Consensus 273 ~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~ 352 (392)
...+.||..--......+++.||++|++++...++.. -.+.+|+++=..+
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~~-------------------~~L~~Gds~y~p~----------- 123 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSS-------------------KKLTVDSYAYLPP----------- 123 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CCC-------------------EEECTTEEEEECT-----------
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCcE-------------------EEEcCCCEEEECC-----------
Confidence 4456777653222334568999999999998752221 1799999863331
Q ss_pred CCCCcceeEEEcceEEEEEecH
Q 042233 353 DIPKSNRTIQALTNVDAFMLMA 374 (392)
Q Consensus 353 ~~~~r~~tv~A~~~~~l~~L~~ 374 (392)
+ ...+++..+.++++.+.+
T Consensus 124 ~---~~H~~~N~~~Ar~l~V~k 142 (266)
T 4e2q_A 124 N---FHHSLDCVESATLVVFER 142 (266)
T ss_dssp T---CCCEEEESSCEEEEEEEE
T ss_pred C---CCEEEEeCCCEEEEEEEe
Confidence 1 223455556777776643
No 119
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=32.96 E-value=34 Score=30.00 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=35.8
Q ss_pred hcceeeeCCCCEEEe-cCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechh
Q 042233 270 CVKPTFFTEHTHLIR-EGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEE 340 (392)
Q Consensus 270 ~l~~~~~~~ge~I~~-~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~ 340 (392)
.+....++||..+-. .--..++.++|++|++.+...+. . -.+.+||++--.
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~-~-------------------~~l~~GD~~~~~ 217 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEEN-Y-------------------YPVTAGDIIWMG 217 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTE-E-------------------EEEETTCEEEEC
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCE-E-------------------EEcCCCCEEEEC
Confidence 455667889887653 33456789999999999987432 1 179999986543
No 120
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=32.90 E-value=28 Score=29.07 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=29.3
Q ss_pred eeCCCCEEEe---cCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeec
Q 042233 275 FFTEHTHLIR---EGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYG 338 (392)
Q Consensus 275 ~~~~ge~I~~---~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FG 338 (392)
.+.||...-. ..-..+++++|++|.+.+...+++. .....+.+||.+=
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~----------------~~~~~l~~GD~~~ 173 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKEN----------------PKEALLPTGASMF 173 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTS----------------CEEEEECTTCEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCC----------------cccEEECCCCEEE
Confidence 3456554321 1223468999999999998754211 0122799999873
No 121
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=32.53 E-value=47 Score=29.11 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=31.6
Q ss_pred eeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeech
Q 042233 273 PTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339 (392)
Q Consensus 273 ~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe 339 (392)
...+.||...-..- .+++.+|++|++++...+. . ..+.+||++=-
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~~~-~-------------------~~l~~Gd~~~~ 98 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAVGGE-T-------------------RTLREYDYVYL 98 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEECSSC-E-------------------EEECTTEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEECCE-E-------------------EEECCCCEEEE
Confidence 34567877665442 7789999999999987432 1 17999987643
No 122
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=32.48 E-value=41 Score=29.34 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=26.3
Q ss_pred cceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEe
Q 042233 271 VKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~ 305 (392)
+....+.||..+-.---...++++|++|.+++...
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~ 70 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVG 70 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEET
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEEC
Confidence 44455788887755444567899999999999873
No 123
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=32.38 E-value=23 Score=26.50 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=33.4
Q ss_pred hhHHHhhcccccCcHHHHHHHHHHHHHHHhhcCCCcHHHHH--------hhCcHHHHHHHHHHH
Q 042233 190 PREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTDYIDVQNLL--------NNLPNELRRELKREL 245 (392)
Q Consensus 190 ~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~~~~il--------~~Lp~~Lr~ei~~~~ 245 (392)
.+.+++.|+.+=....-+.+|+.+..-..+.....+-++++ ...|.+.|.++...+
T Consensus 22 ~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~I 85 (96)
T 3mhs_B 22 YELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQI 85 (96)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHH
Confidence 34566666665555555556666655555544556655555 456777777776665
No 124
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=31.30 E-value=45 Score=24.98 Aligned_cols=31 Identities=3% Similarity=0.076 Sum_probs=19.8
Q ss_pred eeCCCCEEEecCCCCCeEEEEEeeeEEEEEe
Q 042233 275 FFTEHTHLIREGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 275 ~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~ 305 (392)
.+.||..+-..--...++++|++|.+.+...
T Consensus 33 ~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~ 63 (117)
T 2b8m_A 33 VLPRGEQMPKHYSNSYVHLIIIKGEMTLTLE 63 (117)
T ss_dssp EEETTCBCCCEECSSCEEEEEEESEEEEEET
T ss_pred EECCCCcCCCEeCCCcEEEEEEeCEEEEEEC
Confidence 3455554321122346799999999998874
No 125
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=31.24 E-value=77 Score=26.47 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=31.0
Q ss_pred hcccccccCcHHHHHHHhhhcceeeeCCCCEEEecCCCCCeEEEEE
Q 042233 251 KKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVV 296 (392)
Q Consensus 251 ~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~lyfI~ 296 (392)
-+.|.|++++-....+++.. .+||.|+++...++.+-+..
T Consensus 12 I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit~ 51 (178)
T 2xp1_A 12 YKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLVI 51 (178)
T ss_dssp GGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEEE
T ss_pred ccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEEE
Confidence 46799999998877777766 36999999988777655543
No 126
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=31.17 E-value=29 Score=28.21 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=23.2
Q ss_pred CCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeec
Q 042233 288 PIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYG 338 (392)
Q Consensus 288 ~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FG 338 (392)
..+++++|++|.+++.. ++.. ..+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i-~g~~-------------------~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII-DGRK-------------------VSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE-TTEE-------------------EEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE-CCEE-------------------EEEcCCCEEE
Confidence 35689999999999987 3321 2799999873
No 127
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=30.76 E-value=31 Score=26.34 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=20.2
Q ss_pred eeeeCCCCEEE--ecCCCCCeEEEEEeeeEEEEEe
Q 042233 273 PTFFTEHTHLI--REGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 273 ~~~~~~ge~I~--~~gd~~~~lyfI~~G~V~v~~~ 305 (392)
...+.||..+- ..-+..+.+|+|++|.+.+...
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~ 64 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFITID 64 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEET
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEEEC
Confidence 34566776542 1222234577799999998874
No 128
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=30.34 E-value=99 Score=25.98 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=26.2
Q ss_pred hcceeeeCCCCEEEecCCCCCeEEEEEeeeEE
Q 042233 270 CVKPTFFTEHTHLIREGDPIDEMIFVVQGKLR 301 (392)
Q Consensus 270 ~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~ 301 (392)
.+....+.||..+-...-.+.++.+|++|...
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~ 157 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR 157 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE
Confidence 44567788999988777788899999999965
No 129
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=29.50 E-value=31 Score=27.91 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=22.3
Q ss_pred eeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEec
Q 042233 273 PTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFK 306 (392)
Q Consensus 273 ~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~ 306 (392)
...+.||..+-..--...++++|++|.+.+...+
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~ 78 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGS 78 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECC
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECC
Confidence 4456677654221123467999999999998754
No 130
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=29.32 E-value=36 Score=27.42 Aligned_cols=34 Identities=12% Similarity=-0.014 Sum_probs=22.4
Q ss_pred ceeeeCCCCE-EE-ecCCCCCeEEEEEeeeEEEEEe
Q 042233 272 KPTFFTEHTH-LI-REGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 272 ~~~~~~~ge~-I~-~~gd~~~~lyfI~~G~V~v~~~ 305 (392)
....+.||.. .- ..-...+++++|++|.+.+...
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~ 84 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTME 84 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEET
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEEC
Confidence 3455677763 21 1112457899999999999864
No 131
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=27.28 E-value=50 Score=29.59 Aligned_cols=51 Identities=20% Similarity=0.145 Sum_probs=36.2
Q ss_pred hhcceeeeCCCCEEEe-cCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeech
Q 042233 269 DCVKPTFFTEHTHLIR-EGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGE 339 (392)
Q Consensus 269 ~~l~~~~~~~ge~I~~-~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe 339 (392)
..+....+.||..|-. +--..++.++|++|+..+...+. . ..+++||++--
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~~-~-------------------~~v~~GD~~~~ 242 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQD-W-------------------VEVEAGDFMWL 242 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTE-E-------------------EEEETTCEEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECCE-E-------------------EEeCCCCEEEE
Confidence 3456677899999864 34444578999999999887432 1 27999998643
No 132
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=26.64 E-value=50 Score=29.40 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=32.6
Q ss_pred cceeeeCCCCEEEe-cCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeec
Q 042233 271 VKPTFFTEHTHLIR-EGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYG 338 (392)
Q Consensus 271 l~~~~~~~ge~I~~-~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FG 338 (392)
+....+.||..+-. .--..+++++|++|++.+...+. . -.+++||++=
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~-~-------------------~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNE-W-------------------YPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTE-E-------------------EEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECCE-E-------------------EEECCCCEEE
Confidence 34455778876633 22345789999999999987432 1 2799999863
No 133
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=26.05 E-value=42 Score=31.66 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=25.2
Q ss_pred cceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecC
Q 042233 271 VKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKD 307 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~ 307 (392)
+....+.||+.+-..--..+++|||++|+-.....++
T Consensus 105 a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG 141 (368)
T 3nw4_A 105 AAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNG 141 (368)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETT
T ss_pred EEEEEECCCCccCceecccceEEEEEecceEEEEECC
Confidence 3346688888876554456799999999975333333
No 134
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=25.58 E-value=36 Score=32.46 Aligned_cols=76 Identities=7% Similarity=-0.066 Sum_probs=47.2
Q ss_pred ceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCC
Q 042233 272 KPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFS 351 (392)
Q Consensus 272 ~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~ 351 (392)
....+.||+..-..--..+++|||++|+..+.. ++.+ ..+++||+|=...-
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V-~ge~-------------------~~~~~GD~~~iP~g--------- 347 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV-GGKR-------------------FDWSEHDIFCVPAW--------- 347 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE-TTEE-------------------EEECTTCEEEECTT---------
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE-CCEE-------------------EEEeCCCEEEECCC---------
Confidence 455677877765544456689999999986655 2222 27999998754421
Q ss_pred CCCCCcceeEEE---cceEEEEEecHHHHHHHH
Q 042233 352 FDIPKSNRTIQA---LTNVDAFMLMADDLKIVF 381 (392)
Q Consensus 352 ~~~~~r~~tv~A---~~~~~l~~L~~~~f~~ll 381 (392)
....+.. .+++.++.++-.-+.+-|
T Consensus 348 -----~~H~~~N~g~~e~~~ll~i~D~Pl~~~L 375 (394)
T 3bu7_A 348 -----TWHEHCNTQERDDACLFSFNDFPVMEKL 375 (394)
T ss_dssp -----CCEEEEECCSSCCEEEEEEESHHHHHHT
T ss_pred -----CeEEeEeCCCCCCeEEEEeeCHHHHHHh
Confidence 1133333 356778877765555444
No 135
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=25.47 E-value=48 Score=28.89 Aligned_cols=48 Identities=8% Similarity=-0.082 Sum_probs=33.3
Q ss_pred eeeeCC-CCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechh
Q 042233 273 PTFFTE-HTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEE 340 (392)
Q Consensus 273 ~~~~~~-ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~ 340 (392)
...+.| |..+-..--...++++|++|.+++...+. . ..+.+||.+--.
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-~-------------------~~l~~Gd~i~ip 197 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGC-T-------------------VEMKFGTAYFCE 197 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEETTE-E-------------------EEECTTCEEEEC
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEECCE-E-------------------EEECCCCEEEEC
Confidence 344788 77665444445789999999999987432 1 169999987544
No 136
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=25.11 E-value=57 Score=28.68 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=25.1
Q ss_pred CCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechh
Q 042233 289 IDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEE 340 (392)
Q Consensus 289 ~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~ 340 (392)
.+++..|++|.+.+...++.. ..+++||.|--.
T Consensus 186 ~~E~~~ILeG~v~lt~~~G~~-------------------~~~~aGD~~~~P 218 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENGSS-------------------LTVNTGDTVFVA 218 (238)
T ss_dssp SCEEEEEEECCEEEEETTSCE-------------------EEECTTCEEEEC
T ss_pred CCEEEEEEEeEEEEEeCCCCE-------------------EEECCCCEEEEC
Confidence 468999999999998755432 279999987543
No 137
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=24.93 E-value=1.1e+02 Score=25.63 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=25.1
Q ss_pred cceeeeCCCCEEEec-CCCCCeEEEEEeeeEEEEEec
Q 042233 271 VKPTFFTEHTHLIRE-GDPIDEMIFVVQGKLRTYTFK 306 (392)
Q Consensus 271 l~~~~~~~ge~I~~~-gd~~~~lyfI~~G~V~v~~~~ 306 (392)
+....+.||...-.- -...+++++|++|.+++...+
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~ 110 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILG 110 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEEC
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEc
Confidence 445567888765433 233579999999999987643
No 138
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=24.56 E-value=20 Score=22.75 Aligned_cols=17 Identities=24% Similarity=0.622 Sum_probs=13.9
Q ss_pred HHHHhhCcHHHHHHHHH
Q 042233 227 QNLLNNLPNELRRELKR 243 (392)
Q Consensus 227 ~~il~~Lp~~Lr~ei~~ 243 (392)
.++++.||..++.|+..
T Consensus 18 ~eVF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 18 QEVFKQLPADIQEEILS 34 (48)
T ss_dssp GGGTTTSCHHHHHHHTT
T ss_pred HHHHHHCcHHHHHHHHh
Confidence 56899999999988753
No 139
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=24.48 E-value=49 Score=25.43 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=15.2
Q ss_pred CCeEEEEEeeeEEEEEec
Q 042233 289 IDEMIFVVQGKLRTYTFK 306 (392)
Q Consensus 289 ~~~lyfI~~G~V~v~~~~ 306 (392)
..++++|++|.+.+...+
T Consensus 64 ~~E~~~vl~G~~~~~~~~ 81 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFEYED 81 (134)
T ss_dssp SCEEEEEEESEEEEEETT
T ss_pred CcEEEEEEeCEEEEEECC
Confidence 378999999999998744
No 140
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=23.81 E-value=74 Score=28.84 Aligned_cols=33 Identities=18% Similarity=0.026 Sum_probs=23.6
Q ss_pred ceeeeCCCCEEEec-CCCCCeEEEEEeeeEEEEE
Q 042233 272 KPTFFTEHTHLIRE-GDPIDEMIFVVQGKLRTYT 304 (392)
Q Consensus 272 ~~~~~~~ge~I~~~-gd~~~~lyfI~~G~V~v~~ 304 (392)
......||...-.. -+..+++++|++|.+++..
T Consensus 49 ~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~ 82 (337)
T 1y3t_A 49 VLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL 82 (337)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE
T ss_pred EEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE
Confidence 34456788766332 3337899999999999986
No 141
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=22.94 E-value=55 Score=30.52 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=21.7
Q ss_pred ceeeeCCCCEEEecCCCCCeEEEEEeeeEEE
Q 042233 272 KPTFFTEHTHLIREGDPIDEMIFVVQGKLRT 302 (392)
Q Consensus 272 ~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v 302 (392)
....+.||...-..--...++++|++|+..+
T Consensus 103 ~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~ 133 (354)
T 2d40_A 103 GLQLIMPGEVAPSHRHNQSALRFIVEGKGAF 133 (354)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEECSSCE
T ss_pred EEEEECCCCCcCCeecCcceEEEEEEEEEEE
Confidence 3455778877643333456999999999877
No 142
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=22.57 E-value=72 Score=28.76 Aligned_cols=32 Identities=9% Similarity=0.422 Sum_probs=0.0
Q ss_pred CCCCeEEEEEeeeEEEEEecCC---ccCcccCCcccccCccccccccccCCCee
Q 042233 287 DPIDEMIFVVQGKLRTYTFKDI---QSGSTSSDHKRYDGKNTRKEDLLQDGDFY 337 (392)
Q Consensus 287 d~~~~lyfI~~G~V~v~~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~G~~F 337 (392)
+..+++|++++|.+.+...+++ .. .+++|++|
T Consensus 49 ~~~dE~FyqlkG~m~l~~~d~g~~~~V-------------------~i~eGemf 83 (286)
T 2qnk_A 49 EEGEEVFYQLEGDMVLRVLEQGKHRDV-------------------VIRQGEIF 83 (286)
T ss_dssp CSSCEEEEEEESCEEEEEEETTEEEEE-------------------EECTTEEE
T ss_pred CCCCeEEEEEeCeEEEEEEeCCceeeE-------------------EECCCeEE
No 143
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=22.20 E-value=33 Score=26.70 Aligned_cols=15 Identities=20% Similarity=0.477 Sum_probs=12.2
Q ss_pred CCeEEEEEeeeEEEE
Q 042233 289 IDEMIFVVQGKLRTY 303 (392)
Q Consensus 289 ~~~lyfI~~G~V~v~ 303 (392)
..++++|++|.+.+.
T Consensus 59 ~~e~~~vl~G~~~~~ 73 (145)
T 3ht1_A 59 WEHEIYVLEGSMGLV 73 (145)
T ss_dssp SCEEEEEEEECEEEE
T ss_pred CceEEEEEEeEEEEE
Confidence 345678999999988
No 144
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=21.94 E-value=79 Score=25.10 Aligned_cols=32 Identities=9% Similarity=-0.001 Sum_probs=24.5
Q ss_pred cceeeeCCCCEEEecCCCCCeEEEEEeeeEEE
Q 042233 271 VKPTFFTEHTHLIREGDPIDEMIFVVQGKLRT 302 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v 302 (392)
+....+.||..+-.-.-...+.++|++|....
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~ 77 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV 77 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE
Confidence 45567888888865555567789999999984
No 145
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=21.63 E-value=58 Score=28.66 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=32.5
Q ss_pred cceeeeCCCCEEEecC-CCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeec
Q 042233 271 VKPTFFTEHTHLIREG-DPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYG 338 (392)
Q Consensus 271 l~~~~~~~ge~I~~~g-d~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FG 338 (392)
+....+.||..+-..- ...+++++|++|++++...+. . ..+.+||++=
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~-~-------------------~~l~~GD~i~ 229 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNN-W-------------------IPVKKGDYIF 229 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSC-E-------------------EEEETTCEEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECCE-E-------------------EEeCCCCEEE
Confidence 3456678887653222 235789999999999886432 1 1799999863
No 146
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=21.37 E-value=1e+02 Score=28.68 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=24.7
Q ss_pred cceeeeCCCCEEEecCCCC-CeEEEEEeeeEEEEEe
Q 042233 271 VKPTFFTEHTHLIREGDPI-DEMIFVVQGKLRTYTF 305 (392)
Q Consensus 271 l~~~~~~~ge~I~~~gd~~-~~lyfI~~G~V~v~~~ 305 (392)
+....+.||...-..--.. +++++|++|++++...
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~ 294 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVF 294 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEE
Confidence 3445578887764433344 7999999999988764
No 147
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=21.08 E-value=49 Score=29.65 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=21.6
Q ss_pred eeeeCCCCEEEe--cCCCCCeEEEEEeeeEEEEEe
Q 042233 273 PTFFTEHTHLIR--EGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 273 ~~~~~~ge~I~~--~gd~~~~lyfI~~G~V~v~~~ 305 (392)
...+.||...-. ..-..+++++|++|++++...
T Consensus 72 ~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~ 106 (278)
T 1sq4_A 72 IVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQ 106 (278)
T ss_dssp EEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEES
T ss_pred EEEECCCCccCCCCcCCCceEEEEEEeCEEEEEEC
Confidence 344566665511 112356899999999999874
No 148
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=21.04 E-value=56 Score=21.64 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=22.8
Q ss_pred cchhHHHhhcccccCcH-----HHHHHHHHHHHH
Q 042233 188 LKPREIEEWQPFQKLSK-----NLQQKVKKYKSY 216 (392)
Q Consensus 188 ~~~~~l~~~m~~~~lp~-----~L~~ri~~y~~~ 216 (392)
-++.++.++++.+++|. +|..|+..|+.-
T Consensus 13 lkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 13 LKLAELKQECLARGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp SCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 45677889999998875 888888888763
No 149
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=20.97 E-value=79 Score=30.43 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=28.3
Q ss_pred hcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEe
Q 042233 270 CVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 270 ~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~ 305 (392)
.+....+.||..+-..-...+++++|++|++.+...
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v 97 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLV 97 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEE
Confidence 455677899988876655577899999999988764
No 150
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=20.80 E-value=1.2e+02 Score=28.58 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=51.5
Q ss_pred eeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeechhhhhhhhccCCCC
Q 042233 273 PTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSF 352 (392)
Q Consensus 273 ~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~l~~~~~~ 352 (392)
.....||+..-..-..+..+|.|.+|.-.+...+ .+ -..++||.|=-.+.
T Consensus 283 ~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I~~-~~-------------------~~w~~gD~fvvP~w---------- 332 (368)
T 3nw4_A 283 FHRLRAGTETATRNEVGSTVFQVFEGAGAVVMNG-ET-------------------TKLEKGDMFVVPSW---------- 332 (368)
T ss_dssp EEEECTTCBCCCEEESSCEEEEEEESCEEEEETT-EE-------------------EEECTTCEEEECTT----------
T ss_pred eEEECCCCccCCeeccccEEEEEEeCcEEEEECC-EE-------------------EEecCCCEEEECCC----------
Confidence 3455666665444455678999999998877632 11 17899999855533
Q ss_pred CCCCcceeEEEcceEEEEEecHHHHHHHH
Q 042233 353 DIPKSNRTIQALTNVDAFMLMADDLKIVF 381 (392)
Q Consensus 353 ~~~~r~~tv~A~~~~~l~~L~~~~f~~ll 381 (392)
...+..+.+++.++.++-.-+.+-|
T Consensus 333 ----~~h~~~n~~~a~Lf~~~D~Pl~~~L 357 (368)
T 3nw4_A 333 ----VPWSLQAETQFDLFRFSDAPIMEAL 357 (368)
T ss_dssp ----CCEEEEESSSEEEEEEESHHHHHHT
T ss_pred ----CcEEEEeCCCEEEEEEeCHHHHHHh
Confidence 2356778899999998877666544
No 151
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=20.78 E-value=1.4e+02 Score=29.12 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=39.7
Q ss_pred HHHHhhhcceeeeCCCCEEEecC-CCCCeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCeec
Q 042233 264 LDALCDCVKPTFFTEHTHLIREG-DPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYG 338 (392)
Q Consensus 264 l~~l~~~l~~~~~~~ge~I~~~g-d~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~FG 338 (392)
+..+-..+....+.||-.+-.-- ..++++++|++|.+.+...+... +......+.+||+|=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g--------------~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQG--------------NAVFDGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTS--------------CEEEEEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCC--------------CEEEeEEEcCCCEEE
Confidence 44555567777788988664332 33689999999999987654211 111224689999873
No 152
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=20.46 E-value=80 Score=30.19 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=27.9
Q ss_pred hcceeeeCCCCEEEecCCCCCeEEEEEeeeEEEEEe
Q 042233 270 CVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTF 305 (392)
Q Consensus 270 ~l~~~~~~~ge~I~~~gd~~~~lyfI~~G~V~v~~~ 305 (392)
.+....+.||..+...-...+++++|++|++.+..-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v 85 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLV 85 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEE
Confidence 355677899987766655677899999999988753
No 153
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=20.40 E-value=62 Score=24.93 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=26.2
Q ss_pred hcchhHHHhhcccccCcH-----HHHHHHHHHHHHHH
Q 042233 187 TLKPREIEEWQPFQKLSK-----NLQQKVKKYKSYIR 218 (392)
Q Consensus 187 ~~~~~~l~~~m~~~~lp~-----~L~~ri~~y~~~~~ 218 (392)
+-++.+++++++.+++|. +|..||..|++...
T Consensus 39 kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~ 75 (114)
T 2rnn_A 39 LLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL 75 (114)
T ss_dssp TCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc
Confidence 456678999999999885 99999999988644
No 154
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=20.26 E-value=92 Score=25.93 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=23.3
Q ss_pred CeEEEEEeeeEEEEEecCCccCcccCCcccccCccccccccccCCCee
Q 042233 290 DEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFY 337 (392)
Q Consensus 290 ~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~G~~F 337 (392)
+++++|++|++.+...+... +.....+++||.+
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g---------------~~~~~~l~~GD~v 129 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEG---------------DAKWISMEPGTVV 129 (190)
T ss_dssp CEEEEEEESCEEEEEECTTC---------------CEEEEEECTTCEE
T ss_pred CEEEEEEcCEEEEEEcCcCC---------------cEEEEEECCCcEE
Confidence 69999999999998754310 0112379999976
No 155
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=20.20 E-value=65 Score=24.24 Aligned_cols=56 Identities=13% Similarity=0.276 Sum_probs=32.0
Q ss_pred hhHHHhhcccccCcHHHHHHHHHHHHHHHhhcC--CCcHHHHHh--------hCcHHHHHHHHHHH
Q 042233 190 PREIEEWQPFQKLSKNLQQKVKKYKSYIRRKTD--YIDVQNLLN--------NLPNELRRELKREL 245 (392)
Q Consensus 190 ~~~l~~~m~~~~lp~~L~~ri~~y~~~~~~~~~--~~~~~~il~--------~Lp~~Lr~ei~~~~ 245 (392)
.+.+++.|+.+=....-+.+|+....-..+.+. ..+-++++. ..|.+.|.++...+
T Consensus 26 ~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~rI 91 (101)
T 4dhx_B 26 RERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRI 91 (101)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHH
Confidence 345666666555555555666666655555432 445555554 46666666666655
Done!