BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042234
(658 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 282 bits (722), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 186/480 (38%), Positives = 262/480 (54%), Gaps = 56/480 (11%)
Query: 188 RSFLWSLVFTIPVFLTSMVFMYIPGIKHGLDTKIVNMLTIGEIIRWVLSTPVQFIIGRRF 247
R F +L+ TIPV + M HGL I I+ +L+TPV G F
Sbjct: 83 RRFWIALMLTIPVVILEMG-------GHGLKHFISG--NGSSWIQLLLATPVVLWGGWPF 133
Query: 248 YTGSYKALRHGSANLDVLISLGTNAAYFYSMYSVLRAATSPH-FEGTD-----FFETSSM 301
+ +++L+ G N+ LI++G A+ YSM +VL PH F + +FE +++
Sbjct: 134 FKRGWQSLKTGQLNMFTLIAMGIGVAWIYSMVAVLWPGVFPHAFRSQEGVVAVYFEAAAV 193
Query: 302 LISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRND 361
+ + +LLG+ LE+ A+ +T AI L+ L PE+A + EDG SEEE+ + D
Sbjct: 194 ITTLVLLGQVLELKAREQTGSAIRALLKLVPESAH--RIKEDG---SEEEVSLDNVAVGD 248
Query: 362 VIKIIPGAKVASDGYVLWGQSHVNESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATR 421
++++ PG K+ DG V G+S V+ESM+TGE PVAK VIG T+N+ G +KA
Sbjct: 249 LLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIPVAKEASAKVIGATINQTGSFVMKALH 308
Query: 422 VGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYP 481
VGS++ LA+IV++V AQ ++AP+Q+ AD +S +FVP VI+++ +++ W L G
Sbjct: 309 VGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALLGP----- 363
Query: 482 ESWIPSSMDSFQLALQFG----ISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQ 537
Q AL +G +SV++IACPCALGLATP ++MVG G GA GVLIK +
Sbjct: 364 -----------QPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAE 412
Query: 538 ALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYE-----VVAATEVNSEHPL 592
ALE KVN +V DKTGTLT G P L +V DF E + AA E SEHPL
Sbjct: 413 ALERMEKVNTLVVDKTGTLTEGHPK------LTRIVTDDFVEDNALALAAALEHQSEHPL 466
Query: 593 AKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMVGNKSLMLDNNIDIPP 652
A AIV AK E F + TG GV V + +GN LM ++ D P
Sbjct: 467 ANAIVHAAK-----EKGLSLGSVEAFEAPTGKGVVGQVDGHHVAIGNARLMQEHGGDNAP 521
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 275 bits (702), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 195/557 (35%), Positives = 291/557 (52%), Gaps = 60/557 (10%)
Query: 101 LQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTGS 160
++V G+ ++ IE ++ +L GV + V+ I + +VIE G
Sbjct: 6 VRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65
Query: 161 GRF--KARIFPEGGGGRENLKQEEIKQYYRSFLWSLVFTIPVFLTSMVFMYIPGIKHGLD 218
G +A + E E+L + + K Y +F L+ + F++
Sbjct: 66 GVVDEQAAVSAE----VEHLSRMKRKLYVAAFAGVLLLFLAHFIS--------------- 106
Query: 219 TKIVNMLTIGEIIRWVLSTPVQFIIGRRFYTGSYKALRHGSANLDVLISLGTNAAYFYSM 278
L + ++ +++ P F G + ++ ALR + N+DV+ S+G AA+ S+
Sbjct: 107 ------LPYEDFVQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVMYSMGVGAAFLASV 160
Query: 279 YSVLRAATSPHFEGTDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLL 338
S A P F+ETS +L++F+LLG+ LE AK +T EAI KL+ L +TA ++
Sbjct: 161 LST--AGVLPR--EYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVI 216
Query: 339 TLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQSHVNESMITGEARPVAK 398
DG I+ + + D++ + PG K+ DG V+ G+S+V+ESMI+GE PV K
Sbjct: 217 ---RDGKEIA---VPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLK 270
Query: 399 RKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVP 458
KG V G T+N GVL I+ATRVG E+ LAQIV+LVE A +K P+Q+ AD++ YF+P
Sbjct: 271 SKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIP 330
Query: 459 LVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTA 518
V++++ S ++ W+ H+ A I+V+V+ACPCA GLATPTA
Sbjct: 331 TVLLVAISAFIYWYFIA--HA-----------PLLFAFTTLIAVLVVACPCAFGLATPTA 377
Query: 519 VMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFY 578
+ VG G GA G+LIK ALE A KV ++FDKTGTLT GKP V L N R+
Sbjct: 378 LTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL-NGDERELL 436
Query: 579 EVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMVG 638
+ A E SEHP+A+AIV+ A + + P E I G GV A I+VG
Sbjct: 437 RLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEV-----IAGEGVVA----DGILVG 487
Query: 639 NKSLMLDNNIDIPPDAE 655
NK LM D + + + E
Sbjct: 488 NKRLMEDFGVAVSNEVE 504
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 26 IGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGF 85
+ + GMTC C ++E A+ ++ GV+ VRV LATE A + +D K +++ I IED G+
Sbjct: 6 VRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 269 bits (687), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 171/427 (40%), Positives = 245/427 (57%), Gaps = 33/427 (7%)
Query: 229 EIIRWVLSTPVQFIIGRRFYTGSYKALRHGSANLDVLISLGTNAAYFYSMYSVLRAATSP 288
+ ++ +++ P F G + ++ ALR + N+DV+ S+G AA+ S+ S A P
Sbjct: 33 DFVQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVMYSMGVGAAFLASVLST--AGVLP 90
Query: 289 HFEGTDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVIS 348
F+ETS +L++F+LLG+ LE AK +T EAI KL+ L +TA ++ ++ V
Sbjct: 91 R--EYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPV 148
Query: 349 EEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQSHVNESMITGEARPVAKRKGYTVIGGT 408
EE + D++ + PG K+ DG V+ G+S+V+ESMI+GE PV K KG V G T
Sbjct: 149 EE------VAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGAT 202
Query: 409 VNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTW 468
+N GVL I+ATRVG E+ LAQIV+LVE A +K P+Q+ AD++ YF+P V++++ S +
Sbjct: 203 INNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAF 262
Query: 469 LAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGAS 528
+ W+ H+ A I+V+V+ACPCA GLATPTA+ VG G GA
Sbjct: 263 IYWYFIA--HA-----------PLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAE 309
Query: 529 QGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNS 588
G+LIK ALE A KV ++FDKTGTLT GKP V L N R+ + A E S
Sbjct: 310 LGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL-NGDERELLRLAAIAERRS 368
Query: 589 EHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMVGNKSLMLDNNI 648
EHP+A+AIV+ A + + P E I G GV A I+VGNK LM D +
Sbjct: 369 EHPIAEAIVKKALEHGIELGEPEKVEV-----IAGEGVVA----DGILVGNKRLMEDFGV 419
Query: 649 DIPPDAE 655
+ + E
Sbjct: 420 AVSNEVE 426
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 90/119 (75%)
Query: 321 SEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWG 380
SEA+AKL+ L AT++TLD D ++SEE++D L+QR D+IK++PG K DG V+ G
Sbjct: 6 SEALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEG 65
Query: 381 QSHVNESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQ 439
S V+ES+ITGEA PVAK+ G TVI G++N+NG L I AT VG+++ L+QIV+LVE AQ
Sbjct: 66 HSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLICATHVGADTTLSQIVKLVEEAQ 124
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 6/117 (5%)
Query: 322 EAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQ 381
EAI KL+ L +TA ++ DG I+ + + D++ + PG K+ DG V+ G+
Sbjct: 1 EAIKKLVGLQAKTAVVI---RDGKEIA---VPVEEVAVGDIVIVRPGEKIPVDGVVVEGE 54
Query: 382 SHVNESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESA 438
S+V+ESMI+GE PV K KG V G T+N GVL I+ATRVG E+ LAQIV+LVE A
Sbjct: 55 SYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDA 111
>pdb|2EW9|A Chain A, Solution Structure Of Apowln5-6
Length = 149
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 22 QLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIE 81
Q C + I GMTC +C + +E+ LQ GV +V VAL AE+ YDP+++ +I I+
Sbjct: 4 QKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQ 63
Query: 82 DTGFEATLIS--TGEDMSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAI 139
D GFEA ++ G D I L + G+ + IE+ L G+ V K +
Sbjct: 64 DLGFEAAVMEDYAGSD-GNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALV 122
Query: 140 SYKPDMTGPRNFMKVIESTG 159
+ P++ GPR+ +K+IE G
Sbjct: 123 KFDPEIIGPRDIIKIIEEIG 142
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 2 IEDVGFQATLIQDET-SDKSTQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATE 60
I+D+GF+A +++D SD + +L I GMTC +C +E L G+ VALAT
Sbjct: 62 IQDLGFEAAVMEDYAGSDGNIEL---TITGMTCASCVHNIESKLTRTNGITYASVALATS 118
Query: 61 AAEVHYDPKILNYNQILAAIEDTGFEATL 89
A V +DP+I+ I+ IE+ GF A+L
Sbjct: 119 KALVKFDPEIIGPRDIIKIIEEIGFHASL 147
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 522 GTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVV 581
G+ GA G+LIK ALE A KV ++FDKTGTLT GKP V L N R+ +
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL-NGDERELLRLA 67
Query: 582 AATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMVGNKS 641
A E SEHP+A+AIV+ A + + P E I G GV A I+VGNK
Sbjct: 68 AIAERRSEHPIAEAIVKKALEHGIELGEPEKVEV-----IAGEGVVAD----GILVGNKR 118
Query: 642 LMLDNNIDIPPDAE 655
LM D + + + E
Sbjct: 119 LMEDFGVAVSNEVE 132
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 522 GTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVV 581
G+ GA G+LIK ALE A KV ++FDKTGTLT GKP V L N R+ +
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL-NGDERELLRLA 67
Query: 582 AATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMVGNKS 641
A E SE P+A+AIV KK E PE + I+ G GV A I+VGNK
Sbjct: 68 AIAERRSEQPIAEAIV---KKALEHGIELGEPEKVEVIA--GEGVVAD----GILVGNKR 118
Query: 642 LMLDNNIDIPPDAE 655
LM D + + + E
Sbjct: 119 LMEDFGVAVSNEVE 132
>pdb|1AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
pdb|2AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
Length = 72
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 21 TQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAI 80
TQ I I+GMTC +C ++E + PGV+++RV+LA V YDP + + + AI
Sbjct: 2 TQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAI 61
Query: 81 EDTGFEATL 89
ED GF+ATL
Sbjct: 62 EDMGFDATL 70
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 101 LQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTG 159
+ +DG+ + ++ IE + PGV I V + Y P +T P IE G
Sbjct: 7 INIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMG 65
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 529 QGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNS 588
+G++IK E +++ I+FDKTGTLT G P+V T+ + + + + A+ E S
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFDKTGTLTYGTPIV--TQFIGDSLSLAY---AASVEALS 66
Query: 589 EHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMVGNKSLMLDNNI 648
HP+AKAIV+YAK E E DF I+G GV+ + +K I V +NN
Sbjct: 67 SHPIAKAIVKYAK-----EQGVKILEVKDFKEISGIGVRGKISDKIIEVKKA----ENNN 117
Query: 649 DI 650
DI
Sbjct: 118 DI 119
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 26 IGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGF 85
I I GMTC +C ++E + + GVQ + V+LA A V Y+P +++ ++ AAIED GF
Sbjct: 126 IAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGF 185
Query: 86 EATLIS 91
EA+++S
Sbjct: 186 EASVVS 191
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 30/173 (17%)
Query: 25 RIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDT- 83
++ I+GM C +C +E+ + + GVQ+++V+L + A+V YDP + + AIE
Sbjct: 23 QLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALP 82
Query: 84 --GFEATLISTGEDMSKIH------------------------LQVDGIRTDHSMRMIEN 117
F+ +L E H + + G+ + IE
Sbjct: 83 PGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEG 142
Query: 118 SLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTGSGRFKARIFPE 170
+ L GV I V + Y P + P IE G F+A + E
Sbjct: 143 MISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMG---FEASVVSE 192
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 88 TLISTGEDMSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTG 147
TL G + + L++DG+ + IE ++ L GV I V + Y P T
Sbjct: 11 TLGHQGSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTS 70
Query: 148 PRNFMKVIESTGSGRFKARIFPEGGGG 174
P + IE+ G FK + P+G G
Sbjct: 71 PVALQRAIEALPPGNFKVSL-PDGAEG 96
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 28 INGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEA 87
++GMTC C+ +EK L+ +PGV + V LATE + V YDP I IE G+
Sbjct: 12 VSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIEKLGYHV 71
Query: 88 TLISTGEDMSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTG 147
K ++G+ IE L + GV V+ + + + Y P
Sbjct: 72 V-------TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEAS 124
Query: 148 PRNFMKVIESTG 159
+ + ++ G
Sbjct: 125 VSDLKEAVDKLG 136
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 21 TQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAI 80
T+ I GMTC C+ +EK L I GV N V A E V Y+PK + + + A+
Sbjct: 73 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAV 132
Query: 81 EDTGFEATL 89
+ G++ L
Sbjct: 133 DKLGYKLKL 141
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 95 DMSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKV 154
+ +I +QV G+ IE L+ +PGV V+ + Y P TG +
Sbjct: 4 EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEK 63
Query: 155 IESTG 159
IE G
Sbjct: 64 IEKLG 68
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 7/132 (5%)
Query: 28 INGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEA 87
++GMTC C+ +EK L+ +PGV + V LATE V YDP I IE G+
Sbjct: 12 VSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV 71
Query: 88 TLISTGEDMSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTG 147
K ++G+ IE L + GV V+ + + + Y P
Sbjct: 72 V-------TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEAS 124
Query: 148 PRNFMKVIESTG 159
+ + ++ G
Sbjct: 125 VSDLKEAVDKLG 136
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 21 TQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAI 80
T+ I GMTC C+ +EK L I GV N V A E V Y+PK + + + A+
Sbjct: 73 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAV 132
Query: 81 EDTGFEATL 89
+ G++ L
Sbjct: 133 DKLGYKLKL 141
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 95 DMSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKV 154
+ +I +QV G+ IE L+ +PGV V+ + + Y P TG +
Sbjct: 4 EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEK 63
Query: 155 IESTG 159
IE G
Sbjct: 64 IEKLG 68
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 529 QGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNS 588
+G++IK E +++ I+F+KTGTLT G P+V T+ + + + + A+ E S
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIV--TQFIGDSLSLAY---AASVEALS 66
Query: 589 EHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMVGNKSLMLDNNI 648
HP+AKAIV+YAK E E DF I+G GV+ + +K I V +NN
Sbjct: 67 SHPIAKAIVKYAK-----EQGVKILEVKDFKEISGIGVRGKISDKIIEVKK----AENNN 117
Query: 649 DI 650
DI
Sbjct: 118 DI 119
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 529 QGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNS 588
+G++IK E +++ I+F+KTGTLT G P+V T+ + + + + A+ E S
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFNKTGTLTYGTPIV--TQFIGDSLSLAY---AASVEALS 66
Query: 589 EHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMVGNKSLMLDNNI 648
HP+AKAIV+YAK E E DF I+G GV+ + +K I V +NN
Sbjct: 67 SHPIAKAIVKYAK-----EQGVKILEVKDFKEISGIGVRGKISDKIIEVKKA----ENNN 117
Query: 649 DI 650
DI
Sbjct: 118 DI 119
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 16/213 (7%)
Query: 350 EEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQS--HVNESMITGEARPVAKRKGYTVIGG 407
+EI++ + D++++ G + +DG ++ + V++S +TGE+ V K KG V
Sbjct: 189 KEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFAS 248
Query: 408 TVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFST 467
+ + G + T G + + + LV +A + + I + LVI
Sbjct: 249 SAVKRGEAFVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIV 308
Query: 468 WLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGA 527
W++ F + S P I L+F +++ +I P L T + VG A
Sbjct: 309 WVSSF----YRSNPIVQI----------LEFTLAITIIGVPVGLPAVVTTTMAVGAAYLA 354
Query: 528 SQGVLIKGGQALESAHKVNCIVFDKTGTLTVGK 560
+ +++ A+ES V + DKTGTLT K
Sbjct: 355 KKKAIVQKLSAIESLAGVEILCSDKTGTLTKNK 387
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 534 KGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLA 593
K ALE A KV ++FDKTGTLT GKP V L N R+ + A E SEHP+A
Sbjct: 1 KNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL-NGDERELLRLAAIAERRSEHPIA 59
Query: 594 KAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMVGNKSLMLDNNIDIPPD 653
+AIV+ A + + P E I G GV A I+VGNK L D + + +
Sbjct: 60 EAIVKKALEHGIELGEPEKVEV-----IAGEGVVAD----GILVGNKRLXEDFGVAVSNE 110
Query: 654 AE 655
E
Sbjct: 111 VE 112
>pdb|1YJU|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain Of Menkes Protein
pdb|1YJV|A Chain A, Solution Structure Of The Cu(i) Form Of The Sixth
Soluble Domain Of Menkes Protein
Length = 75
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 28 INGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEA 87
+ GMTC +C +E +L G+ VALAT A + YDP+I+ I+ IE GFEA
Sbjct: 10 VRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEA 69
Query: 88 TLI 90
+L+
Sbjct: 70 SLV 72
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 99 IHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIEST 158
+ L V G+ + IE+SL G+ V +K I Y P++ GPR+ + IES
Sbjct: 6 LELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESL 65
Query: 159 G 159
G
Sbjct: 66 G 66
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 537 QALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAI 596
QA E A + ++FDKTGTLT G+ V+ + N + ++ A+ E SEHP+A AI
Sbjct: 5 QAFERAKDLQAVIFDKTGTLTEGR-FGVTDIVGFNHSEDELLQIAASLEARSEHPIAAAI 63
Query: 597 VEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMV 637
VE A+K E +F +I G GV+ V+ + MV
Sbjct: 64 VEEAEK-----RGFGLTEVEEFRAIPGKGVEGIVNGRRYMV 99
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 537 QALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAI 596
QA E A + ++FDKTGTLT G+ V+ + N + ++ A+ E SEHP+A AI
Sbjct: 5 QAFERAKDLQAVIFDKTGTLTEGR-FGVTDIVGFNHSEDELLQIAASLEARSEHPIAAAI 63
Query: 597 VEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMV 637
VE A+K E +F +I G GV+ V+ + MV
Sbjct: 64 VEEAEK-----RGFGLTEVEEFRAIPGKGVEGIVNGRRYMV 99
>pdb|1KVI|A Chain A, Solution Structure Of The Reduced Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
pdb|1KVJ|A Chain A, Solution Structure Of The Cu(I) Bound Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
Length = 79
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 26 IGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGF 85
I + GMTC +C T+E+ + + GV +++V+L + A + YDPK+ + AI+D GF
Sbjct: 12 ISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 71
Query: 86 EATL 89
+A +
Sbjct: 72 DAVI 75
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 96 MSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVI 155
++ + + V+G+ + + IE + + GVH I V I Y P + P+ + I
Sbjct: 7 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 66
Query: 156 ESTG 159
+ G
Sbjct: 67 DDMG 70
>pdb|3CJK|B Chain B, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 75
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 26 IGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGF 85
I + GMTC +C T+E+ + + GV +++V+L + A + YDPK+ + AI+D GF
Sbjct: 6 ISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 65
Query: 86 EATL 89
+A +
Sbjct: 66 DAVI 69
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 96 MSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVI 155
++ + + V+G+ + + IE + + GVH I V I Y P + P+ + I
Sbjct: 1 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 60
Query: 156 ESTG 159
+ G
Sbjct: 61 DDMG 64
>pdb|1YJR|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
pdb|1YJT|A Chain A, Solution Structure Of The Cu(I) Form Of The Sixth
Soluble Domain A69p Mutant Of Menkes Protein
Length = 75
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 28 INGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEA 87
+ GMTC +C +E +L G+ VALAT A + YDP+I+ I+ IE GFE
Sbjct: 10 VRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEP 69
Query: 88 TLI 90
+L+
Sbjct: 70 SLV 72
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 99 IHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIEST 158
+ L V G+ + IE+SL G+ V +K I Y P++ GPR+ + IES
Sbjct: 6 LELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESL 65
Query: 159 G 159
G
Sbjct: 66 G 66
>pdb|2K1R|A Chain A, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
Length = 73
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 26 IGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGF 85
I + GMTC +C T+E+ + + GV +++V+L + A + YDPK+ + AI+D GF
Sbjct: 8 ISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 67
Query: 86 EATL 89
+A +
Sbjct: 68 DAVI 71
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 96 MSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVI 155
++ + + V+G+ + + IE + + GVH I V I Y P + P+ + I
Sbjct: 3 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 62
Query: 156 ESTG 159
+ G
Sbjct: 63 DDMG 66
>pdb|1Y3K|A Chain A, Solution Structure Of The Apo Form Of The Fifth Domain
Of Menkes Protein
pdb|1Y3J|A Chain A, Solution Structure Of The Copper(I) Form Of The Fifth
Domain Of Menkes Protein
Length = 77
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 24 CRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDT 83
C I + GMTC +C +E+ L+ G+ ++ VAL AEV Y+P ++ I I +
Sbjct: 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64
Query: 84 GFEATLISTGE 94
GF AT+I E
Sbjct: 65 GFGATVIENIE 75
>pdb|3DXS|X Chain X, Crystal Structure Of A Copper Binding Domain From Hma7,
A P- Type Atpase
Length = 74
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 25 RIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTG 84
++G+ GMTC CS +VE AL + GV VAL A+V +DP ++ I IED G
Sbjct: 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAG 64
Query: 85 FEATLIS 91
FEA +++
Sbjct: 65 FEAEILA 71
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 25 RIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTG 84
++ + GMTC +C++T+E + + GVQ ++V+L + A + Y P +++ ++ IE G
Sbjct: 12 KMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMG 71
Query: 85 FEA 87
F A
Sbjct: 72 FPA 74
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I)
Form Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
Length = 76
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 25 RIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTG 84
++ + GMTC +C++T+E + + GVQ ++V+L + A + Y P +++ ++ IE G
Sbjct: 6 KMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMG 65
Query: 85 FEA 87
F A
Sbjct: 66 FPA 68
>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
Subtilis
Length = 76
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%)
Query: 28 INGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGF 85
++GMTC C+ +EK L+ +PGV + V LATE V YDP I IE G+
Sbjct: 12 VSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 95 DMSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKV 154
+ +I +QV G+ IE L+ +PGV V+ + + Y P TG +
Sbjct: 4 EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEK 63
Query: 155 IESTG 159
IE G
Sbjct: 64 IEKLG 68
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 124/279 (44%), Gaps = 34/279 (12%)
Query: 301 MLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRN 360
+LI+ ++G + E A+ AI L + PE + D S + I +R I
Sbjct: 98 ILIANAIVGVWQERNAEN----AIEALKEYEPEMGKVYRADRK----SVQRIKARDIVPG 149
Query: 361 DVIKIIPGAKVASDGYVLWGQS---HVNESMITGEARPVAK--------------RKGYT 403
D++++ G KV +D +L +S V++S++TGE+ V K +K
Sbjct: 150 DIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 209
Query: 404 VIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIIL 463
G + L I AT G + + +I + + + K P+Q+ D + ++ ++
Sbjct: 210 FSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLI 268
Query: 464 SFSTWLAWFLAGKFHS--YPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMV 521
+ WL G F+ + SWI ++ F++A+ ++ + P L T + +
Sbjct: 269 CVAVWL--INIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAI----PEGLPAVITTCLAL 322
Query: 522 GTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGK 560
GT A + +++ ++E+ + I DKTGTLT +
Sbjct: 323 GTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 361
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 124/279 (44%), Gaps = 34/279 (12%)
Query: 301 MLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRN 360
+LI+ ++G + E A+ AI L + PE + D S + I +R I
Sbjct: 97 ILIANAIVGVWQERNAEN----AIEALKEYEPEMGKVYRADRK----SVQRIKARDIVPG 148
Query: 361 DVIKIIPGAKVASDGYVLWGQS---HVNESMITGEARPVAK--------------RKGYT 403
D++++ G KV +D +L +S V++S++TGE+ V K +K
Sbjct: 149 DIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 208
Query: 404 VIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIIL 463
G + L I AT G + + +I + + + K P+Q+ D + ++ ++
Sbjct: 209 FSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLI 267
Query: 464 SFSTWLAWFLAGKFHS--YPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMV 521
+ WL G F+ + SWI ++ F++A+ ++ + P L T + +
Sbjct: 268 CVAVWL--INIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAI----PEGLPAVITTCLAL 321
Query: 522 GTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGK 560
GT A + +++ ++E+ + I DKTGTLT +
Sbjct: 322 GTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 360
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 21 TQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAI 80
T+ I GMTC C+ +EK L I GV N V A E V Y+PK + + + A+
Sbjct: 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAV 61
Query: 81 EDTGFEATL 89
+ G++ L
Sbjct: 62 DKLGYKLKL 70
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis In The Cu(I)loaded State
Length = 80
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 21 TQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAI 80
T+ I GMTC C+ +EK L I GV N V A E V Y+PK + + + A+
Sbjct: 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAV 61
Query: 81 EDTGFEATL 89
+ G++ L
Sbjct: 62 DKLGYKLKL 70
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 126/280 (45%), Gaps = 36/280 (12%)
Query: 301 MLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRN 360
+LI+ ++G + E A+ AI L + PE + D S + I +R I
Sbjct: 97 ILIANAIVGVWQERNAEN----AIEALKEYEPEMGKVYRADRK----SVQRIKARDIVPG 148
Query: 361 DVIKIIPGAKVASDGYVLWGQS---HVNESMITGEARPVAK--------------RKGYT 403
D++++ G KV +D +L +S V++S++TGE+ V K +K
Sbjct: 149 DIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 208
Query: 404 VIGGTVNENGVLHIKATR-VGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVII 462
G + + I AT VG+E + +I + + + K P+Q+ D + ++ +
Sbjct: 209 FSGTNIAAGKAIGIVATTGVGTE--IGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL 266
Query: 463 LSFSTWLAWFLAGKFHS--YPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVM 520
+ + WL G F+ + SWI ++ F++A+ ++ + P L T +
Sbjct: 267 ICVAVWL--INIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAI----PEGLPAVITTCLA 320
Query: 521 VGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGK 560
+GT A + +++ ++E+ + I DKTGTLT +
Sbjct: 321 LGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 360
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 22 QLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHY----DPKILNYNQIL 77
Q + + GM CT+C++++E+A+ +PGVQ+ +V A E A V Y P+IL
Sbjct: 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILT----- 56
Query: 78 AAIEDTGFEATLI 90
A+E G+ A ++
Sbjct: 57 DAVERAGYHARVL 69
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 99 IHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIEST 158
I+LQ++G+ IE ++ +PGV V+ + + +SY + T P+ +E
Sbjct: 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETT-PQILTDAVERA 62
Query: 159 GSGRFKARIF 168
G + AR+
Sbjct: 63 G---YHARVL 69
>pdb|2GGP|B Chain B, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FVQ|A Chain A, Solution Structure Of The Yeast Copper Transporter
Domain Ccc2a In The Apo And Cu(I) Loaded States
Length = 72
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 26 IGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGF 85
+ ++GMTC+ C+ T+ L+A+ GV ++L T +V YD ++ + I IED GF
Sbjct: 6 LAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEV-TADSIKEIIEDCGF 64
Query: 86 EATLI 90
+ ++
Sbjct: 65 DCEIL 69
>pdb|1FVS|A Chain A, Solution Structure Of The Yeast Copper Transporter
Domain Ccc2a In The Apo And Cu(I) Load States
Length = 72
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 26 IGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGF 85
+ ++GMTC+ C+ T+ L+A+ GV ++L T +V YD ++ + I IED GF
Sbjct: 6 LAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEV-TADSIKEIIEDCGF 64
Query: 86 EATLI 90
+ ++
Sbjct: 65 DCEIL 69
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 119/274 (43%), Gaps = 33/274 (12%)
Query: 302 LISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRND 361
LI+ +++ + K++ IA +L P+ AT++ DG+ +I++ + D
Sbjct: 146 LIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVI---RDGDKF---QINADQLVVGD 199
Query: 362 VIKIIPGAKVASDGYVLWGQSH-VNESMITGEARPVAKRKGYT----------VIGGTVN 410
++++ G +V +D +L Q V+ S +TGE+ P + T T+
Sbjct: 200 LVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMC 259
Query: 411 ENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLA 470
G G + + +I L + K P+ A I ++FV ++ L+
Sbjct: 260 LEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPI---AIEI-EHFVDIIAGLAILFGAT 315
Query: 471 WFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVG-ASQ 529
+F+ Y +F A+ F ++++V P L LAT T + T AS+
Sbjct: 316 FFIVAMCIGY----------TFLRAMVFFMAIVVAYVPEGL-LATVTVCLSLTAKRLASK 364
Query: 530 GVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVV 563
++K +A+E+ + I DKTGTLT + V
Sbjct: 365 NCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTV 398
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 123/279 (44%), Gaps = 34/279 (12%)
Query: 301 MLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRN 360
+LI+ ++G + E A+ AI L + PE + D S + I +R I
Sbjct: 97 ILIANAIVGVWQERNAEN----AIEALKEYEPEMGKVYRADRK----SVQRIKARDIVPG 148
Query: 361 DVIKIIPGAKVASDGYVLWGQS---HVNESMITGEARPVAK--------------RKGYT 403
D++++ G KV +D +L +S V++S++TGE+ V K +K
Sbjct: 149 DIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 208
Query: 404 VIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIIL 463
G + L I AT G + + +I + + + K P+Q+ D + ++ ++
Sbjct: 209 FSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLI 267
Query: 464 SFSTWLAWFLAGKFHS--YPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMV 521
+ WL G F+ + SWI ++ F++A+ ++ + P L T + +
Sbjct: 268 CVAVWL--INIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAI----PEGLPAVITTCLAL 321
Query: 522 GTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGK 560
GT A + +++ ++E+ + I KTGTLT +
Sbjct: 322 GTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQ 360
>pdb|2L3M|A Chain A, Solution Structure Of The Putative Copper-Ion-Binding
Protein From Bacillus Anthracis Str. Ames
Length = 71
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 28 INGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFE 86
+ GM+C C +E +++ + GV+ V+V LA EV D ++ I+A IED G++
Sbjct: 11 VEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYD 69
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 22 QLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHY----DPKILNYNQIL 77
Q + + GM C C++++E+A+ +PGVQ+ +V A E A V Y P+IL
Sbjct: 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILT----- 57
Query: 78 AAIEDTGFEATLI 90
A+E G+ A ++
Sbjct: 58 DAVERAGYHARVL 70
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 99 IHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIEST 158
I+LQ++G+R IE ++ +PGV V+ + + +SY + T P+ +E
Sbjct: 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETT-PQILTDAVERA 63
Query: 159 GSGRFKARIFPE 170
G + AR+ +
Sbjct: 64 G---YHARVLKQ 72
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 22 QLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHY----DPKILNYNQIL 77
Q + + GM C C++++E+A+ +PGVQ+ +V A E A V Y P+IL
Sbjct: 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILT----- 57
Query: 78 AAIEDTGFEATLI 90
A+E G+ A ++
Sbjct: 58 DAVERAGYHARVL 70
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 99 IHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIEST 158
I+LQ++G+R IE ++ +PGV V+ + + +SY + T P+ +E
Sbjct: 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETT-PQILTDAVERA 63
Query: 159 GSGRFKARIF 168
G + AR+
Sbjct: 64 G---YHARVL 70
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 20 STQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAA 79
+TQ + + GMTC+ C TV+KA+ + GV V V T A V +D + ++ A
Sbjct: 1 ATQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKA 60
Query: 80 IEDTGFEATL 89
D G+ +++
Sbjct: 61 TADAGYPSSV 70
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 23 LCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVH--YDPKILNYNQILAAI 80
+ ++ + GMTC C V KAL+ +PGV+ V V+L A V DPK L + A+
Sbjct: 1 MLKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKAL-----VQAV 55
Query: 81 EDTGFEATLIS 91
E+ G++A +++
Sbjct: 56 EEEGYKAEVLA 66
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 86/211 (40%), Gaps = 15/211 (7%)
Query: 351 EIDSRLIQRNDVIKIIPGAKVASDGYVLWGQS-HVNESMITGEARPVAKRKGYTVIGGTV 409
E ++ ++ D++ I G + +D +L G V++S +TGE+ PV K G V G+
Sbjct: 142 EQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGST 201
Query: 410 NENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWL 469
+ G + G + + LV+S QK I + + + I +
Sbjct: 202 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQV-GHFQKVLTAIGNFCICSIAIGMVIEII 260
Query: 470 AWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQ 529
+ P ++ + + +++ P A+ + +G+ + Q
Sbjct: 261 VMY-------------PIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQ 307
Query: 530 GVLIKGGQALESAHKVNCIVFDKTGTLTVGK 560
G + K A+E ++ + DKTGTLT+ K
Sbjct: 308 GAITKRMTAIEEMAGMDVLCSDKTGTLTLNK 338
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 20 STQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAA 79
+TQ + + GMTC C TV+KAL + GV V V A V +D + ++ A
Sbjct: 1 ATQTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFDDTKASVQKLTKA 60
Query: 80 IEDTGFEATL 89
D G+ +++
Sbjct: 61 TADAGYPSSV 70
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 25 RIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTG 84
+ I GMTC +C+ V++AL+ +PGVQ+ V+ A++ P + + + AA+ G
Sbjct: 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGT-SPDALTAAVAGLG 61
Query: 85 FEATL 89
++ATL
Sbjct: 62 YKATL 66
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 21 TQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAI 80
TQ ++G GM C C++++E+AL+ + GV V +AT V YDPK ++ I I
Sbjct: 4 TQQMQVG--GMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERI 61
Query: 81 EDTGF 85
G+
Sbjct: 62 AALGY 66
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 31 MTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLI 90
MTC +C V K+LQ + GVQ+V V L + VH L ++ A +E TG +A L
Sbjct: 27 MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVH---TTLPSQEVQALLEGTGRQAVLK 83
Query: 91 STG 93
G
Sbjct: 84 GMG 86
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 33/259 (12%)
Query: 317 KGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGY 376
+ K+S + ++ P+ A ++ DG + I++ + D++++ G ++ +D
Sbjct: 156 EAKSSRIMDSFKNMVPQQALVI---RDGE---KSTINAEFVVAGDLVEVKGGDRIPADLR 209
Query: 377 VLWGQ-SHVNESMITGEARPVAKRKGYTVIGGTVNEN----------GVLHIKATRVGSE 425
++ V+ S +TGE+ P + ++ N G G
Sbjct: 210 IISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDR 269
Query: 426 SALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWI 485
+ + +I L ++ + P+ + + + L S ++ + G SW+
Sbjct: 270 TVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGY------SWL 323
Query: 486 PSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVG-ASQGVLIKGGQALESAHK 544
A+ F I ++V P L LAT T + T A + L+K +A+E+
Sbjct: 324 E--------AVIFLIGIIVANVPEGL-LATVTVCLTLTAKRMARKNCLVKNLEAVETLGS 374
Query: 545 VNCIVFDKTGTLTVGKPVV 563
+ I DKTGTLT + V
Sbjct: 375 TSTICSDKTGTLTQNRMTV 393
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 127/300 (42%), Gaps = 46/300 (15%)
Query: 282 LRAATSPHFEGTDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLD 341
++AAT + + + +L + +++ + K+S+ + ++ P+ A ++
Sbjct: 92 IQAATEEEPQNDNLY-LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNG 150
Query: 342 EDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQ-SHVNESMITGEARPVAKRK 400
E ++ +EE + D++++ G ++ +D ++ V+ S +TGE+ P +
Sbjct: 151 EKMSINAEE------VVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSP 204
Query: 401 GYTVIGGTVNEN----------------GVLHIKATRVGSESALAQIVRLVESAQMAKAP 444
+T NEN G G + + +I L + + P
Sbjct: 205 DFT------NENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTP 258
Query: 445 VQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMV 504
+ A I ++F+ ++ ++ +++F+ Y +W+ A+ F I ++V
Sbjct: 259 I---AAEI-EHFIHIITGVAVFLGVSFFILSLILEY--TWLE--------AVIFLIGIIV 304
Query: 505 IACPCALGLATPTAVMVGTGVG-ASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVV 563
P L LAT T + T A + L+K +A+E+ + I DKTGTLT + V
Sbjct: 305 ANVPEGL-LATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTV 363
>pdb|2KOY|A Chain A, Structure Of The E1064a Mutant Of The N-Domain Of Wilson
Disease Associated Protein
Length = 141
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 17/112 (15%)
Query: 561 PVVVSTKLLKNMV---LRDFYEVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHD 617
P V+ LL ++ LR VV +SEHPL A+ +Y K E+ D
Sbjct: 6 PRVMRVLLLGDVATLPLRKVLAVVGTAAASSEHPLGVAVTKYCK---EELGTETLGYCTD 62
Query: 618 FISITGHGVKATVHNKE-----------IMVGNKSLMLDNNIDIPPDAEEML 658
F ++ G G+ V N E +++GN+ + N + I D + +
Sbjct: 63 FQAVPGCGIGCKVSNVEGILAAVPQTFSVLIGNREWLRRNGLTISSDVSDAM 114
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 15 ETSDKSTQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYN 74
++S TQ ++G GM CT+C +E +L+ + GV V +AT V YDPK ++
Sbjct: 3 QSSPLKTQQMQVG--GMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEI 60
Query: 75 QILAAIEDTGFEATLISTGEDMSKIHLQVDGIRTDHSMR 113
I I G+ + E S + L +G + HS R
Sbjct: 61 TIQERIAALGY-----TLAEPKSSVTL--NGHKHPHSHR 92
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus
Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 28 INGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEA 87
+ GM+C C VE ++ + GV V V L +V +D ++ I AIED G++
Sbjct: 8 VEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67
Query: 88 TLI 90
I
Sbjct: 68 AKI 70
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 25 RIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTG 84
++ + GM CT+C +E +L+ + GV V +AT V YDPK ++ I I G
Sbjct: 6 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALG 65
Query: 85 FEATLISTGEDMSKIHLQVDGIRTDHSMR 113
+ + E S + L +G + HS R
Sbjct: 66 Y-----TLAEPKSSVTL--NGHKHPHSHR 87
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Zn(Ii)-Form
Length = 73
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 28 INGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGF 85
++GM C C+ VE A++ + GV V+V ATE V D I Q+ +A++ G+
Sbjct: 9 VSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI--RAQVESALQKAGY 64
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A
Trinuclear Cu(I) Cluster
Length = 69
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 28 INGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFE 86
+ GM+C C VE ++ + GV V V L +V +D ++ I AIED G++
Sbjct: 8 VEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYD 66
>pdb|2KMV|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Free Form
pdb|2KMX|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Bound Form
Length = 185
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 559 GKPVVVSTKLL---KNMVLRDFYEVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEA 615
G PVV K+L + +V E NSEHPL AI +Y K ++ D
Sbjct: 6 GTPVVNQVKVLTESNRISHHKILAIVGTAESNSEHPLGTAITKYCK---QELDTETLGTC 62
Query: 616 HDFISITGHGVKATVHNKE-IMVGNKSLMLDNNI 648
DF + G G+ V N E ++ N + DNNI
Sbjct: 63 IDFQVVPGCGISCKVTNIEGLLHKNNWNIEDNNI 96
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 126/300 (42%), Gaps = 46/300 (15%)
Query: 282 LRAATSPHFEGTDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLD 341
++AAT + + + +L + +++ + K+S+ + ++ P+ A ++
Sbjct: 86 IQAATEEEPQNDNLY-LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNG 144
Query: 342 EDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQ-SHVNESMITGEARPVAKRK 400
E ++ +EE + D++++ G ++ +D ++ V+ S +TGE+ P +
Sbjct: 145 EKMSINAEE------VVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSP 198
Query: 401 GYTVIGGTVNEN----------------GVLHIKATRVGSESALAQIVRLVESAQMAKAP 444
+T NEN G G + + +I L + + P
Sbjct: 199 DFT------NENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTP 252
Query: 445 VQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMV 504
+ A I ++F+ ++ ++ +++F+ Y +W+ A+ F I ++V
Sbjct: 253 I---AAEI-EHFIHIITGVAVFLGVSFFILSLILEY--TWLE--------AVIFLIGIIV 298
Query: 505 IACPCALGLATPTAVMVGTGVG-ASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVV 563
P L LAT T + T A + L+K +A+E+ + I KTGTLT + V
Sbjct: 299 ANVPEGL-LATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTV 357
>pdb|2ARF|A Chain A, Solution Structure Of The Wilson Atpase N-Domain In The
Presence Of Atp
Length = 165
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 561 PVVVSTKLLKNMV---LRDFYEVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHD 617
P V+ LL ++ LR VV E +SEHPL A+ +Y K E+ D
Sbjct: 6 PRVMRVLLLGDVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCK---EELGTETLGYCTD 62
Query: 618 FISITGHGVKATVHNKE 634
F ++ G G+ V N E
Sbjct: 63 FQAVPGCGIGCKVSNVE 79
>pdb|1CPZ|A Chain A, Copper Chaperone Of Enterococcus Hirae (Apo-Form)
Length = 68
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 28 INGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEA 87
+ GM+C C +E+A+ I GV+ V+V L E A V +D + +I AI + G++A
Sbjct: 6 VKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQA 65
Query: 88 TLI 90
+I
Sbjct: 66 EVI 68
>pdb|2VOY|J Chain J, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 118
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 559 GKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHDF 618
GKP V L N R+ + A E SEHP+A+AIV+ A + + P E
Sbjct: 1 GKPEVTDLVPL-NGDERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEV--- 56
Query: 619 ISITGHGVKATVHNKEIMVGNKSLMLDNNIDIPPDAEEML 658
I G GV A I+VGNK L D + + + E L
Sbjct: 57 --IAGEGVVA----DGILVGNKRLXEDFGVAVSNEVELAL 90
>pdb|2G9O|A Chain A, Solution Structure Of The Apo Form Of The Third Metal-
Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
pdb|2GA7|A Chain A, Solution Structure Of The Copper(I) Form Of The Third
Metal- Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
Length = 90
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 28 INGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIE 81
I+GM C +C + +E L A+ V ++ V+L +A V Y+ + + AIE
Sbjct: 9 IDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIE 62
>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast
Metallochaperone, Atx1
Length = 73
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 31 MTCTTCSTTVEKALQAI-PGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFE 86
MTC+ CS V K L + P V + ++L + +V+ L Y+ IL I+ TG E
Sbjct: 13 MTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVY---TTLPYDFILEKIKKTGKE 66
>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
Metallochaperone, Atx1
pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
Length = 73
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 31 MTCTTCSTTVEKALQAI-PGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFE 86
MTC+ CS V K L + P V + ++L + +V+ L Y+ IL I+ TG E
Sbjct: 13 MTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVY---TTLPYDFILEKIKKTGKE 66
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 538 ALESAHKVNCIVFDKTGTLT----VGKPVVVSTK 567
ALE A KV ++FDKTGTLT KP V K
Sbjct: 2 ALEVAEKVTAVIFDKTGTLTKLKESAKPAVQELK 35
>pdb|2KKH|A Chain A, Structure Of The Zinc Binding Domain Of The Atpase Hma4
Length = 95
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 30 GMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATL 89
G+ CT+ +E L+++ GV+ V + + V +D +++ QI A+ + EA +
Sbjct: 24 GICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANV 83
Query: 90 ISTGE 94
GE
Sbjct: 84 RVNGE 88
>pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis
pdb|3L76|B Chain B, Crystal Structure Of Aspartate Kinase From Synechocystis
Length = 600
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 15/81 (18%)
Query: 80 IEDTGFEATLISTGEDMSKIHLQVDGIRTDHSMRMIENSL-------------QALPGVH 126
+ D G +IST E K+ +D D ++ + N+ LP V
Sbjct: 379 LADVGVNIEMISTSE--VKVSCVIDQRDADRAIAALSNAFGVTLSPPKNQTDTSHLPAVR 436
Query: 127 GIGVDSGVHKIAISYKPDMTG 147
G+ +D +IAI + PD G
Sbjct: 437 GVALDQDQAQIAIRHVPDRPG 457
>pdb|1JF2|A Chain A, Crystal Structure Of W92f Obelin Mutant From Obelia
Longissima At 1.72 Angstrom Resolution
pdb|1S36|A Chain A, Crystal Structure Of A Ca2+-Discharged Photoprotein:
Implications For The Mechanisms Of The Calcium Trigger
And The Bioluminescence
Length = 195
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 598 EYAKKFREDEDNPLWPEAH----DFISITGHG 625
+YA K + D DNP W + H DF+ I G+G
Sbjct: 4 KYAVKLKTDFDNPRWIKRHKHMFDFLDINGNG 35
>pdb|1JF0|A Chain A, The Crystal Structure Of Obelin From Obelia Geniculata At
1.82 A Resolution
Length = 195
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 598 EYAKKFREDEDNPLWPEAH----DFISITGHG 625
+YA K + D DNP W + H D++ I G+G
Sbjct: 4 KYAVKLQTDFDNPKWIKRHKFMFDYLDINGNG 35
>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
Determined By Sulfur Sas
Length = 195
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 598 EYAKKFREDEDNPLWPEAH----DFISITGHG 625
+YA K + D DNP W + H DF+ I G+G
Sbjct: 4 KYAVKLKTDFDNPRWIKRHKHMFDFLDINGNG 35
>pdb|1QV0|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1QV1|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1SL9|A Chain A, Obelin From Obelia Longissima
Length = 195
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 598 EYAKKFREDEDNPLWPEAH----DFISITGHG 625
+YA K + D DNP W + H DF+ I G+G
Sbjct: 4 KYAVKLKTDFDNPRWIKRHKHMFDFLDINGNG 35
>pdb|2F8P|A Chain A, Crystal Structure Of Obelin Following Ca2+ Triggered
Bioluminescence Suggests Neutral Coelenteramide As The
Primary Excited State
Length = 195
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 598 EYAKKFREDEDNPLWPEAH----DFISITGHG 625
+YA K + D DNP W + H DF+ I G+G
Sbjct: 4 KYAVKLKTDFDNPRWIKRHKHMFDFLDINGNG 35
>pdb|1SL7|A Chain A, Crystal Structure Of Calcium-Loaded Apo-Obelin From Obelia
Longissima
Length = 195
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 598 EYAKKFREDEDNPLWPEAH----DFISITGHG 625
+YA K + D DNP W + H DF+ I G+G
Sbjct: 4 KYAVKLKTDFDNPRWIKRHKHMFDFLDINGNG 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,769,808
Number of Sequences: 62578
Number of extensions: 761447
Number of successful extensions: 2313
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2180
Number of HSP's gapped (non-prelim): 130
length of query: 658
length of database: 14,973,337
effective HSP length: 105
effective length of query: 553
effective length of database: 8,402,647
effective search space: 4646663791
effective search space used: 4646663791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)