Query 042234
Match_columns 658
No_of_seqs 395 out of 2733
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0207 Cation transport ATPas 100.0 7E-102 2E-106 834.3 49.9 637 1-657 50-694 (951)
2 COG2217 ZntA Cation transport 100.0 4.6E-92 1E-96 776.8 57.5 502 97-652 2-504 (713)
3 PRK10671 copA copper exporting 100.0 4E-86 8.6E-91 767.5 66.6 584 22-651 3-616 (834)
4 PRK11033 zntA zinc/cadmium/mer 100.0 3.3E-74 7E-79 654.7 53.4 479 96-645 52-531 (741)
5 TIGR01511 ATPase-IB1_Cu copper 100.0 6.3E-71 1.4E-75 611.7 45.2 379 243-652 1-379 (562)
6 TIGR01525 ATPase-IB_hvy heavy 100.0 8.3E-59 1.8E-63 516.7 41.6 344 262-650 1-349 (556)
7 TIGR01512 ATPase-IB2_Cd heavy 100.0 6.9E-59 1.5E-63 513.9 39.7 335 262-649 1-335 (536)
8 TIGR01647 ATPase-IIIA_H plasma 100.0 8.3E-53 1.8E-57 480.9 36.7 331 295-646 55-394 (755)
9 TIGR01497 kdpB K+-transporting 100.0 1.9E-51 4.2E-56 453.7 41.9 339 294-654 63-414 (675)
10 PRK01122 potassium-transportin 100.0 1.9E-51 4.2E-56 454.8 41.4 334 299-654 69-413 (679)
11 PRK14010 potassium-transportin 100.0 1.6E-49 3.6E-54 439.0 38.7 323 304-652 74-407 (673)
12 PRK10517 magnesium-transportin 100.0 1.2E-48 2.5E-53 452.0 36.6 330 294-644 121-479 (902)
13 TIGR01524 ATPase-IIIB_Mg magne 100.0 1.4E-48 3.1E-53 451.7 36.7 327 298-645 90-445 (867)
14 PRK15122 magnesium-transportin 100.0 2.9E-48 6.3E-53 449.4 35.3 328 294-643 110-476 (903)
15 TIGR01494 ATPase_P-type ATPase 100.0 2.4E-48 5.1E-53 428.9 30.5 305 303-647 3-312 (499)
16 TIGR01522 ATPase-IIA2_Ca golgi 100.0 4.5E-47 9.7E-52 441.9 34.4 255 295-570 80-349 (884)
17 TIGR01517 ATPase-IIB_Ca plasma 100.0 1.2E-44 2.6E-49 424.0 38.2 342 294-643 127-507 (941)
18 TIGR01116 ATPase-IIA1_Ca sarco 100.0 4.7E-44 1E-48 417.5 38.2 266 293-569 34-313 (917)
19 TIGR01106 ATPase-IIC_X-K sodiu 100.0 5E-44 1.1E-48 419.9 35.9 254 295-568 103-367 (997)
20 COG0474 MgtA Cation transport 100.0 1.7E-43 3.7E-48 410.4 28.4 325 301-644 108-478 (917)
21 TIGR01657 P-ATPase-V P-type AT 100.0 3.5E-42 7.7E-47 406.9 32.6 287 294-601 191-524 (1054)
22 TIGR01523 ATPase-IID_K-Na pota 100.0 4.4E-42 9.4E-47 402.3 32.5 249 298-568 83-382 (1053)
23 KOG0202 Ca2+ transporting ATPa 100.0 1.1E-42 2.4E-47 371.6 15.9 261 296-569 78-356 (972)
24 KOG0204 Calcium transporting A 100.0 1.8E-39 3.8E-44 346.7 23.9 307 292-606 179-524 (1034)
25 KOG0205 Plasma membrane H+-tra 100.0 4.7E-39 1E-43 333.2 18.8 289 291-602 93-388 (942)
26 TIGR01652 ATPase-Plipid phosph 100.0 1E-36 2.2E-41 361.6 26.2 261 292-568 50-382 (1057)
27 PF00122 E1-E2_ATPase: E1-E2 A 100.0 1.1E-36 2.4E-41 302.9 20.1 223 301-541 1-230 (230)
28 KOG0208 Cation transport ATPas 100.0 5.8E-36 1.2E-40 324.3 26.8 282 262-570 186-493 (1140)
29 PLN03190 aminophospholipid tra 100.0 2.4E-34 5.1E-39 338.2 27.8 261 293-568 137-476 (1178)
30 COG2216 KdpB High-affinity K+ 100.0 8.7E-34 1.9E-38 288.1 23.0 345 292-656 61-417 (681)
31 KOG0203 Na+/K+ ATPase, alpha s 100.0 2E-34 4.2E-39 307.9 12.6 253 298-570 128-391 (1019)
32 KOG0209 P-type ATPase [Inorgan 100.0 7.3E-31 1.6E-35 278.8 17.6 288 293-600 214-550 (1160)
33 KOG0210 P-type ATPase [Inorgan 100.0 9.1E-28 2E-32 250.9 20.4 263 293-585 129-451 (1051)
34 KOG0206 P-type ATPase [General 99.9 1.4E-25 3E-30 255.7 15.3 263 293-569 81-411 (1151)
35 KOG0207 Cation transport ATPas 99.4 9.7E-13 2.1E-17 144.7 13.0 136 29-168 1-137 (951)
36 PF00403 HMA: Heavy-metal-asso 99.2 7.4E-11 1.6E-15 90.9 8.1 61 100-160 1-61 (62)
37 PF00403 HMA: Heavy-metal-asso 99.1 3.8E-10 8.1E-15 87.0 8.9 62 25-86 1-62 (62)
38 COG2608 CopZ Copper chaperone 99.0 1.3E-09 2.8E-14 85.9 9.0 67 22-88 2-68 (71)
39 COG2608 CopZ Copper chaperone 99.0 2.1E-09 4.6E-14 84.6 8.1 63 97-159 2-64 (71)
40 PF00702 Hydrolase: haloacid d 98.8 4.7E-09 1E-13 102.9 7.2 91 545-649 1-91 (215)
41 COG2217 ZntA Cation transport 97.8 4.7E-05 1E-09 86.1 8.1 66 23-89 3-69 (713)
42 TIGR00003 copper ion binding p 97.3 0.0019 4.1E-08 48.5 8.8 64 24-87 4-67 (68)
43 TIGR00003 copper ion binding p 97.2 0.0016 3.4E-08 49.0 7.7 62 98-159 3-64 (68)
44 KOG4656 Copper chaperone for s 97.0 0.0015 3.3E-08 60.2 6.0 63 23-89 8-70 (247)
45 KOG4656 Copper chaperone for s 97.0 0.0023 4.9E-08 59.2 7.1 59 97-159 7-65 (247)
46 PLN02957 copper, zinc superoxi 96.9 0.0042 9.1E-08 61.6 9.4 68 22-93 6-73 (238)
47 PLN02957 copper, zinc superoxi 96.8 0.0047 1E-07 61.2 8.8 66 97-169 6-71 (238)
48 KOG1603 Copper chaperone [Inor 96.7 0.0035 7.5E-08 49.7 5.3 53 104-159 11-63 (73)
49 PRK10671 copA copper exporting 96.7 0.0031 6.7E-08 74.6 7.1 63 97-167 3-65 (834)
50 KOG1603 Copper chaperone [Inor 96.3 0.011 2.5E-07 46.7 6.2 55 27-84 9-63 (73)
51 PRK11033 zntA zinc/cadmium/mer 95.8 0.03 6.5E-07 65.2 8.8 66 21-88 52-117 (741)
52 KOG4383 Uncharacterized conser 91.8 2.6 5.7E-05 46.5 12.8 37 342-381 162-198 (1354)
53 TIGR02052 MerP mercuric transp 91.4 1.7 3.8E-05 35.0 9.1 65 23-87 24-88 (92)
54 PRK14054 methionine sulfoxide 88.7 0.62 1.3E-05 43.4 4.5 50 109-158 10-78 (172)
55 TIGR02052 MerP mercuric transp 87.9 3.4 7.4E-05 33.2 8.2 62 98-159 24-85 (92)
56 PRK05528 methionine sulfoxide 86.0 1.3 2.9E-05 40.5 4.9 50 109-158 8-71 (156)
57 COG0225 MsrA Peptide methionin 85.0 1.4 3.1E-05 40.5 4.6 50 109-158 13-81 (174)
58 PRK13748 putative mercuric red 84.6 3.8 8.2E-05 46.4 9.0 59 100-159 3-61 (561)
59 PRK00058 methionine sulfoxide 84.4 1.5 3.3E-05 42.1 4.7 50 109-158 52-120 (213)
60 PRK13014 methionine sulfoxide 83.6 1.3 2.9E-05 41.6 3.9 50 109-158 15-83 (186)
61 TIGR00401 msrA methionine-S-su 82.8 2.3 5E-05 38.6 5.0 50 109-158 7-75 (149)
62 PF01206 TusA: Sulfurtransfera 82.5 6.9 0.00015 30.3 7.1 58 25-92 2-59 (70)
63 PRK13748 putative mercuric red 80.4 6.3 0.00014 44.6 8.7 66 26-92 4-69 (561)
64 PF01625 PMSR: Peptide methion 79.4 3.3 7.2E-05 37.9 4.8 50 109-158 7-75 (155)
65 COG4669 EscJ Type III secretor 73.8 4.6 9.9E-05 39.2 4.2 90 48-145 43-158 (246)
66 cd00371 HMA Heavy-metal-associ 73.5 23 0.00051 23.4 8.0 41 27-67 3-43 (63)
67 PRK05550 bifunctional methioni 71.1 5.6 0.00012 40.1 4.4 50 109-158 134-202 (283)
68 cd00371 HMA Heavy-metal-associ 70.7 24 0.00051 23.3 6.8 42 103-144 4-45 (63)
69 PRK11018 hypothetical protein; 67.4 37 0.00081 27.0 7.6 57 24-90 9-65 (78)
70 TIGR01652 ATPase-Plipid phosph 65.3 95 0.0021 38.2 14.2 67 291-379 46-113 (1057)
71 COG1888 Uncharacterized protei 64.3 32 0.0007 27.9 6.4 64 96-159 5-73 (97)
72 PRK14054 methionine sulfoxide 62.0 16 0.00035 34.0 5.3 50 34-83 10-78 (172)
73 cd03420 SirA_RHOD_Pry_redox Si 60.2 48 0.001 25.6 6.9 56 26-91 2-57 (69)
74 KOG1635 Peptide methionine sul 59.9 17 0.00036 33.4 4.7 50 109-158 31-99 (191)
75 PF02680 DUF211: Uncharacteriz 57.7 41 0.00088 27.8 6.1 63 96-159 4-71 (95)
76 cd03422 YedF YedF is a bacteri 56.5 53 0.0012 25.3 6.6 56 26-91 2-57 (69)
77 cd03423 SirA SirA (also known 55.5 60 0.0013 25.0 6.7 56 26-91 2-57 (69)
78 PRK10929 putative mechanosensi 54.7 2.1E+02 0.0047 35.0 14.1 9 643-651 1069-1077(1109)
79 PRK00299 sulfur transfer prote 54.2 94 0.002 24.9 7.9 57 24-90 10-66 (81)
80 COG0841 AcrB Cation/multidrug 54.0 77 0.0017 38.5 10.4 133 24-157 46-208 (1009)
81 PF00873 ACR_tran: AcrB/AcrD/A 53.6 2.5E+02 0.0054 34.5 15.1 51 36-86 157-213 (1021)
82 cd04888 ACT_PheB-BS C-terminal 52.3 1.1E+02 0.0023 23.6 8.0 59 72-130 13-74 (76)
83 COG2177 FtsX Cell division pro 52.1 2.8E+02 0.0061 28.4 23.9 33 24-56 61-93 (297)
84 cd03421 SirA_like_N SirA_like_ 52.1 67 0.0014 24.5 6.5 53 26-89 2-54 (67)
85 PRK14018 trifunctional thiored 50.1 23 0.00049 39.4 4.8 50 109-158 205-272 (521)
86 PRK05528 methionine sulfoxide 49.6 40 0.00087 30.9 5.6 49 34-82 8-70 (156)
87 PRK10614 multidrug efflux syst 49.1 5.9E+02 0.013 31.3 18.8 61 23-83 660-730 (1025)
88 TIGR01106 ATPase-IIC_X-K sodiu 49.1 3.7E+02 0.0079 33.0 15.3 199 302-522 113-325 (997)
89 PRK10555 aminoglycoside/multid 48.2 1.4E+02 0.0031 36.6 11.7 132 25-157 46-209 (1037)
90 cd00291 SirA_YedF_YeeD SirA, Y 46.9 1E+02 0.0023 23.3 7.0 55 26-90 2-56 (69)
91 PF11491 DUF3213: Protein of u 46.6 29 0.00063 27.6 3.5 51 109-159 10-60 (88)
92 PF03120 DNA_ligase_OB: NAD-de 46.5 11 0.00025 30.3 1.3 22 352-373 45-67 (82)
93 PF15584 Imm44: Immunity prote 46.1 9.9 0.00021 30.9 0.9 19 359-377 13-31 (94)
94 TIGR01517 ATPase-IIB_Ca plasma 44.7 2.9E+02 0.0063 33.6 13.5 158 349-524 189-359 (941)
95 PRK13014 methionine sulfoxide 43.9 36 0.00078 32.2 4.5 49 34-82 15-82 (186)
96 COG0425 SirA Predicted redox p 43.8 1.6E+02 0.0036 23.4 7.9 55 24-88 6-61 (78)
97 PF10173 Mit_KHE1: Mitochondri 42.3 83 0.0018 29.8 6.7 43 116-158 78-126 (187)
98 COG1188 Ribosome-associated he 41.4 97 0.0021 25.9 6.0 25 343-371 39-63 (100)
99 PRK00058 methionine sulfoxide 41.1 48 0.001 32.1 4.9 49 34-82 52-119 (213)
100 PF12710 HAD: haloacid dehalog 40.7 13 0.00029 34.9 1.1 14 548-561 1-14 (192)
101 TIGR01524 ATPase-IIIB_Mg magne 40.5 4.2E+02 0.009 31.9 13.8 78 300-382 96-186 (867)
102 PF12084 DUF3561: Protein of u 37.9 1.1E+02 0.0023 25.8 5.7 41 237-282 65-105 (107)
103 PF01625 PMSR: Peptide methion 37.4 88 0.0019 28.7 5.9 50 34-83 7-75 (155)
104 PF01206 TusA: Sulfurtransfera 37.1 81 0.0018 24.1 4.9 49 100-159 2-51 (70)
105 TIGR00401 msrA methionine-S-su 36.0 80 0.0017 28.7 5.3 49 34-82 7-74 (149)
106 COG1888 Uncharacterized protei 35.5 2.5E+02 0.0054 23.0 7.5 67 23-89 7-78 (97)
107 PF00873 ACR_tran: AcrB/AcrD/A 34.9 5E+02 0.011 31.9 13.6 62 22-83 671-742 (1021)
108 PRK11026 ftsX cell division AB 34.6 3.9E+02 0.0084 27.6 10.8 90 24-128 68-161 (309)
109 PRK14010 potassium-transportin 34.5 7.9E+02 0.017 28.5 14.8 32 349-382 128-159 (673)
110 COG0225 MsrA Peptide methionin 33.2 84 0.0018 29.2 4.9 50 34-83 13-81 (174)
111 PRK11152 ilvM acetolactate syn 33.1 1.3E+02 0.0028 23.9 5.4 50 3-55 25-75 (76)
112 PF02682 AHS1: Allophanate hyd 32.7 81 0.0017 30.4 5.1 47 111-159 26-74 (202)
113 TIGR00915 2A0602 The (Largely 32.3 3.4E+02 0.0073 33.4 11.5 133 24-157 45-209 (1044)
114 PRK10726 hypothetical protein; 31.7 2E+02 0.0043 24.1 6.2 32 251-282 71-102 (105)
115 PRK15348 type III secretion sy 30.5 5.3E+02 0.011 25.7 10.4 33 112-144 109-154 (249)
116 COG0474 MgtA Cation transport 30.0 5.5E+02 0.012 31.1 12.6 207 296-526 107-333 (917)
117 cd04888 ACT_PheB-BS C-terminal 28.9 1.5E+02 0.0033 22.7 5.4 54 2-55 21-74 (76)
118 PRK15127 multidrug efflux syst 28.4 4.9E+02 0.011 32.1 12.0 120 38-157 63-209 (1049)
119 TIGR00439 ftsX putative protei 28.3 5.1E+02 0.011 26.8 10.4 91 23-128 67-161 (309)
120 PRK15385 magnesium transport p 28.0 4E+02 0.0086 26.1 8.9 93 38-133 124-223 (225)
121 PF12794 MscS_TM: Mechanosensi 27.8 7.2E+02 0.016 26.0 12.0 24 233-256 163-186 (340)
122 PRK09577 multidrug efflux prot 27.6 4.7E+02 0.01 32.2 11.6 122 38-159 63-210 (1032)
123 PRK10553 assembly protein for 27.4 3.4E+02 0.0075 22.1 7.3 56 37-130 19-74 (87)
124 TIGR00915 2A0602 The (Largely 27.2 1.3E+03 0.027 28.6 18.5 46 38-83 160-210 (1044)
125 TIGR03527 selenium_YedF seleni 26.5 1.9E+02 0.0042 27.5 6.5 63 28-100 3-65 (194)
126 PRK05550 bifunctional methioni 25.9 1.2E+02 0.0026 30.8 5.1 49 34-82 134-201 (283)
127 COG1862 YajC Preprotein transl 25.7 3.6E+02 0.0079 22.5 7.0 40 300-339 13-52 (97)
128 PF01106 NifU: NifU-like domai 25.6 1.2E+02 0.0026 23.4 4.0 52 74-128 6-65 (68)
129 TIGR02544 III_secr_YscJ type I 25.4 1.3E+02 0.0027 28.8 4.9 34 112-145 109-156 (193)
130 PF01514 YscJ_FliF: Secretory 25.3 1.2E+02 0.0026 29.3 4.8 110 28-146 32-165 (206)
131 PRK11281 hypothetical protein; 25.3 7.3E+02 0.016 30.7 12.3 21 551-571 949-969 (1113)
132 COG4004 Uncharacterized protei 25.2 2.2E+02 0.0048 23.3 5.3 47 71-141 12-58 (96)
133 TIGR01659 sex-lethal sex-letha 25.2 8.1E+02 0.018 25.7 12.3 129 22-158 106-255 (346)
134 PRK15122 magnesium-transportin 24.4 2.5E+02 0.0054 33.9 8.3 185 308-523 126-351 (903)
135 PF01883 DUF59: Domain of unkn 24.2 1E+02 0.0022 23.8 3.4 31 100-130 39-72 (72)
136 PRK11152 ilvM acetolactate syn 23.6 3.6E+02 0.0078 21.4 6.4 56 72-130 16-75 (76)
137 TIGR03028 EpsE polysaccharide 23.4 1.2E+02 0.0026 30.0 4.6 35 332-367 201-236 (239)
138 PF09580 Spore_YhcN_YlaJ: Spor 23.2 1.4E+02 0.0031 27.7 4.9 49 109-157 74-124 (177)
139 PRK11018 hypothetical protein; 23.1 2.5E+02 0.0054 22.2 5.5 52 99-160 9-60 (78)
140 PHA03029 hypothetical protein; 22.7 2.4E+02 0.0053 21.9 4.9 26 450-475 56-81 (92)
141 PRK10503 multidrug efflux syst 22.4 1.5E+03 0.033 27.9 16.9 209 37-275 168-408 (1040)
142 PF09926 DUF2158: Uncharacteri 22.4 59 0.0013 23.8 1.6 12 358-369 2-13 (53)
143 TIGR01657 P-ATPase-V P-type AT 21.6 1.1E+03 0.023 29.2 13.1 34 492-525 399-432 (1054)
144 PRK04435 hypothetical protein; 21.1 4.8E+02 0.01 23.6 7.7 59 72-130 82-143 (147)
145 PRK08433 flagellar motor switc 20.7 88 0.0019 26.9 2.6 21 403-423 77-98 (111)
146 COG1778 Low specificity phosph 20.5 67 0.0015 29.3 1.9 26 539-564 2-27 (170)
147 TIGR00914 2A0601 heavy metal e 20.2 1.7E+03 0.036 27.5 19.3 61 23-83 683-753 (1051)
148 PF01455 HupF_HypC: HupF/HypC 20.2 2.3E+02 0.005 21.9 4.6 32 333-370 17-51 (68)
149 PF13275 S4_2: S4 domain; PDB: 20.2 63 0.0014 24.8 1.4 24 343-370 38-61 (65)
No 1
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-102 Score=834.34 Aligned_cols=637 Identities=49% Similarity=0.787 Sum_probs=567.1
Q ss_pred CcccCCCceeeeccccccCcceEEEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHH
Q 042234 1 TIEDVGFQATLIQDETSDKSTQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAI 80 (658)
Q Consensus 1 ~i~~~g~~~~~~~~~~~~~~~~~~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i 80 (658)
+|||+||++.++.++.... .+..+++.||+|++|+..+++.+++.+|+.++.+.+....+.+.||+...+++.+.+.+
T Consensus 50 ~ied~gf~~~~~~~~~~~~--~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~i 127 (951)
T KOG0207|consen 50 TIEDMGFEASLLSDSEITA--SKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESI 127 (951)
T ss_pred HhhcccceeeecccCcccc--ceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHH
Confidence 5899999998765554443 36779999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcccccccCCcc--eeEEEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhc
Q 042234 81 EDTGFEATLISTGEDM--SKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIEST 158 (658)
Q Consensus 81 ~~~Gy~~~~~~~~~~~--~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~ 158 (658)
+++||.+......+.. ..++|.+.||.|.+|+..||+.+.+++||.+++++..++++.|.|||..+.++++.+.++..
T Consensus 128 e~~gf~a~~i~~~~~~~~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~ 207 (951)
T KOG0207|consen 128 EDLGFSAELIESVNGNSNQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEET 207 (951)
T ss_pred HhcCccceehhcccCCCCCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhh
Confidence 9999999887765433 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeecCCCCCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcchhhhhhhhcHHHHHHHHHH
Q 042234 159 GSGRFKARIFPEGGGGR--ENLKQEEIKQYYRSFLWSLVFTIPVFLTSMVFMYIPGIKHGLDTKIVNMLTIGEIIRWVLS 236 (658)
Q Consensus 159 g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (658)
| +.+...+..+... ......++++|++.|++++.+++|+|++.+.+++..+...... +..+.++...++.++|+
T Consensus 208 ~---~~~~~~~~~~~~~~~~l~~~~ei~~w~~~fl~s~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~ 283 (951)
T KOG0207|consen 208 G---FEASVRPYGDTTFKNSLKHKEEIRKWKRPFLISLGFSLPVSFAMIICPPLAWILALLV-PFLPGLSYGNSLSFVLA 283 (951)
T ss_pred c---ccceeeeccccchhhhhhhhhHHHhcchHHHHHHHHHHHHHHHHHHhccchhhhhhhc-cccccchhhhHHHhhhh
Confidence 9 6554443211111 1223557899999999999999999987766554433110011 22233445578899999
Q ss_pred HhhhhhcCHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 042234 237 TPVQFIIGRRFYTGSYKALRHGSANLDVLISLGTNAAYFYSMYSVLRAATSPHFEGTDFFETSSMLISFILLGKYLEVLA 316 (658)
Q Consensus 237 ~~v~~~~g~~~~~~a~~~l~~~~~~~d~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~y~~~~~~ll~~~~~~~~l~~~~ 316 (658)
+|++|..||+||..||++|++++.|||+|+++++.++|+||++.++..... .. +..||+++.|++.|+.+|+|+|.++
T Consensus 284 ~~vqf~~G~~fy~~A~ksL~~g~~nMdvLv~L~t~aay~~S~~~~~~~~~~-~~-~~tfFdt~~MLi~fi~lgr~LE~~A 361 (951)
T KOG0207|consen 284 TPVQFVGGRPFYLAAYKSLKRGSANMDVLVVLGTTAAYFYSIFSLLAAVVF-DS-PPTFFDTSPMLITFITLGRWLESLA 361 (951)
T ss_pred eeeEEecceeeHHHHHHHHhcCCCCceeehhhHHHHHHHHHHHHHHHHHHc-cC-cchhccccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998877655 33 7899999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEEEecceeeecccccCCCcce
Q 042234 317 KGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQSHVNESMITGEARPV 396 (658)
Q Consensus 317 ~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~g~~~vdes~LtGEs~pv 396 (658)
++|+...+.+|.++.|.++.++. +|+. +++|+.+.+++||+|.|.||++||+||+|++|+++||||.+|||+.|+
T Consensus 362 k~kts~alskLmsl~p~~a~ii~---~g~~--e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss~VDEs~iTGEs~PV 436 (951)
T KOG0207|consen 362 KGKTSEALSKLMSLAPSKATIIE---DGSE--EKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSSEVDESLITGESMPV 436 (951)
T ss_pred hccchHHHHHHhhcCcccceEee---cCCc--ceEeeeeeeccCCEEEECCCCccccccEEEeCceeechhhccCCceec
Confidence 99999999999999999999997 6642 688999999999999999999999999999999999999999999999
Q ss_pred eecCCCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhc
Q 042234 397 AKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGK 476 (658)
Q Consensus 397 ~k~~g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (658)
.|++|+.|.+||+|.+|.+.++++++|.||.+++|.+++++++.+|+|+|+++|+++.+|+|++++++++++++|.+.+.
T Consensus 437 ~Kk~gs~ViaGsiN~nG~l~VkaT~~g~dttla~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~~g~ 516 (951)
T KOG0207|consen 437 PKKKGSTVIAGSINLNGTLLVKATKVGGDTTLAQIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWILIGK 516 (951)
T ss_pred ccCCCCeeeeeeecCCceEEEEEEeccccchHHHHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c-CCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCc
Q 042234 477 F-HSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGT 555 (658)
Q Consensus 477 ~-~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGT 555 (658)
+ ..++..|. ..+..++..++++++++|||+|++++|++.+.+....+++|+++|+.+.+|.+.++++|+||||||
T Consensus 517 ~~~~~~~~~~----~~~~~a~~~aisVlviACPCaLgLATPtAvmvatgvgA~nGvLIKGge~LE~~hkv~tVvFDKTGT 592 (951)
T KOG0207|consen 517 IVFKYPRSFF----DAFSHAFQLAISVLVIACPCALGLATPTAVMVATGVGATNGVLIKGGEALEKAHKVKTVVFDKTGT 592 (951)
T ss_pred ccccCcchhh----HHHHHHHHhhheEEEEECchhhhcCCceEEEEEechhhhcceEEcCcHHHHHHhcCCEEEEcCCCc
Confidence 3 33333443 578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeEEEEEeccC-CCHHHHHHHHHHhhccCCCHHHHHHHHHHHhccCCCCCCCCCCcccceeecCCe--EEEEEcC
Q 042234 556 LTVGKPVVVSTKLLKN-MVLRDFYEVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHG--VKATVHN 632 (658)
Q Consensus 556 LT~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~G--i~~~~~~ 632 (658)
||+|++.+.++..+.+ .+..+++.+++++|.+|+||+++||++||++.+. ......+.++++.||+| +...+++
T Consensus 593 LT~G~~~V~~~~~~~~~~~~~e~l~~v~a~Es~SeHPig~AIv~yak~~~~---~~~~~~~~~~~~~pg~g~~~~~~~~~ 669 (951)
T KOG0207|consen 593 LTEGKPTVVDFKSLSNPISLKEALALVAAMESGSEHPIGKAIVDYAKEKLV---EPNPEGVLSFEYFPGEGIYVTVTVDG 669 (951)
T ss_pred eecceEEEEEEEecCCcccHHHHHHHHHHHhcCCcCchHHHHHHHHHhccc---ccCccccceeecccCCCcccceEEee
Confidence 9999999999999887 7889999999999999999999999999998652 12233456889999999 7789999
Q ss_pred eEEEEcchhhhhhcCCCCChhhhhc
Q 042234 633 KEIMVGNKSLMLDNNIDIPPDAEEM 657 (658)
Q Consensus 633 ~~~~iGs~~~~~~~~i~~~~~~~~~ 657 (658)
+++.+||++||.++|+..+++.++.
T Consensus 670 ~~i~iGN~~~~~r~~~~~~~~i~~~ 694 (951)
T KOG0207|consen 670 NEVLIGNKEWMSRNGCSIPDDILDA 694 (951)
T ss_pred eEEeechHHHHHhcCCCCchhHHHh
Confidence 9999999999999999999887654
No 2
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-92 Score=776.84 Aligned_cols=502 Identities=42% Similarity=0.702 Sum_probs=449.5
Q ss_pred eeEEEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCC-hhhHHHHHHhcCCCCcceeecCCCCCCc
Q 042234 97 SKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTG-PRNFMKVIESTGSGRFKARIFPEGGGGR 175 (658)
Q Consensus 97 ~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~-~~~i~~~i~~~g~~~~~~~~~~~~~~~~ 175 (658)
++..+.++||+|++|+++|| .+.++|||.++++|+.++++.|.||+...+ .+++.+.++..| |............
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~g---y~~~~~~~~~~~~ 77 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAG---YSARLTAALADPA 77 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcC---ccccccccccchh
Confidence 45789999999999999999 999999999999999999999999998777 789999999999 5443311100001
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcchhhhhhhhcHHHHHHHHHHHhhhhhcCHHHHHHHHHHH
Q 042234 176 ENLKQEEIKQYYRSFLWSLVFTIPVFLTSMVFMYIPGIKHGLDTKIVNMLTIGEIIRWVLSTPVQFIIGRRFYTGSYKAL 255 (658)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~g~~~~~~a~~~l 255 (658)
..+.... +...+++++++++++|+++..+..+..+ ....|+++++++|++++.|||||+++|+.+
T Consensus 78 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l 142 (713)
T COG2217 78 EAEARLL-RELLRRLIIAGLLTLPLLLLSLGLLLGA--------------FLLPWVSFLLATPVLFYGGWPFYRGAWRAL 142 (713)
T ss_pred hhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhcch--------------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1011111 4457778888888888877644432221 122578899999999999999999999999
Q ss_pred HcCCCCcchHHHHHHHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Q 042234 256 RHGSANLDVLISLGTNAAYFYSMYSVLRAATSPHFEGTDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETA 335 (658)
Q Consensus 256 ~~~~~~~d~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~ 335 (658)
+++++|||+|++++++.||+||.|.++.. .||+.++++++++++|+++|.+.+.|+.+.+++|.++.|+++
T Consensus 143 ~~~~~~md~Lv~la~~~A~~~s~~~~~~~---------~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A 213 (713)
T COG2217 143 RRGRLNMDTLVALATIGAYAYSLYATLFP---------VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTA 213 (713)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEE
Confidence 99999999999999999999999988753 899999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEEEecceeeecccccCCCcceeecCCCeeeeeceecCceE
Q 042234 336 TLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQSHVNESMITGEARPVAKRKGYTVIGGTVNENGVL 415 (658)
Q Consensus 336 ~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~g~~~vdes~LtGEs~pv~k~~g~~v~~Gt~~~~g~~ 415 (658)
++++. ||+ +++|++++|++||+|.|+|||+||+||+|++|++.||||+|||||.|+.|.+|+.|++||+|.+|.+
T Consensus 214 ~~~~~--~~~---~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s~vDeS~iTGEs~PV~k~~Gd~V~aGtiN~~G~l 288 (713)
T COG2217 214 TVVRG--DGE---EEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSSVDESMLTGESLPVEKKPGDEVFAGTVNLDGSL 288 (713)
T ss_pred EEEec--CCc---EEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcEEeecchhhCCCCCEecCCCCEEeeeEEECCccE
Confidence 88872 665 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHH
Q 042234 416 HIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLA 495 (658)
Q Consensus 416 ~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (658)
.++|+++|.||.+++|.+++++++.+|+|+|+++||++.+|+|.+++++++++++|++.+. .+|..+
T Consensus 289 ~i~vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~-------------~~~~~a 355 (713)
T COG2217 289 TIRVTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGG-------------GDWETA 355 (713)
T ss_pred EEEEEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcC-------------CcHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887653 157779
Q ss_pred HHHHhheeeeeccccccchHHHHHHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccCCCHH
Q 042234 496 LQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLR 575 (658)
Q Consensus 496 ~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~ 575 (658)
+.+++++|+++|||||.+++|+++..++.+++++||++|+++++|.++++|+++||||||||+|+|++.++...++ +++
T Consensus 356 ~~~a~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~~~-~e~ 434 (713)
T COG2217 356 LYRALAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDVVALDG-DED 434 (713)
T ss_pred HHHHHhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEEecCCC-CHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988 889
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHhccCCCCCCCCCCcccceeecCCeEEEEEcCeEEEEcchhhhhhcCCCCCh
Q 042234 576 DFYEVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMVGNKSLMLDNNIDIPP 652 (658)
Q Consensus 576 ~~~~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gi~~~~~~~~~~iGs~~~~~~~~i~~~~ 652 (658)
+++++++++|++|+||+++||++++++.+ .+++.++++++|+||+|.++|+++++||++|+.+++++.+.
T Consensus 435 ~~L~laAalE~~S~HPiA~AIv~~a~~~~-------~~~~~~~~~i~G~Gv~~~v~g~~v~vG~~~~~~~~~~~~~~ 504 (713)
T COG2217 435 ELLALAAALEQHSEHPLAKAIVKAAAERG-------LPDVEDFEEIPGRGVEAEVDGERVLVGNARLLGEEGIDLPL 504 (713)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHhcC-------CCCccceeeeccCcEEEEECCEEEEEcCHHHHhhcCCCccc
Confidence 99999999999999999999999998753 24456699999999999999999999999999999988774
No 3
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=4e-86 Score=767.47 Aligned_cols=584 Identities=30% Similarity=0.543 Sum_probs=490.3
Q ss_pred eEEEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcccccccC--------
Q 042234 22 QLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLISTG-------- 93 (658)
Q Consensus 22 ~~~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~-------- 93 (658)
++.++.|+||+|++|+.++++++++++|+.++.+++.+ ..+... .+.+.+.+.++++||++......
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~~--~~v~~~---~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~ 77 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITE--AHVTGT---ASAEALIETIKQAGYDASVSHPKAKPLTESS 77 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeeeE--EEEEec---CCHHHHHHHHHhcCCcccccccccccccccc
Confidence 35789999999999999999999999999999999954 444432 46789999999999998753210
Q ss_pred ------------------CcceeEEEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHH
Q 042234 94 ------------------EDMSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVI 155 (658)
Q Consensus 94 ------------------~~~~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i 155 (658)
....++++.+.||+|..|++.+++.+.+.+||.++.+|+.+++..+.+ ..+.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I 154 (834)
T PRK10671 78 IPSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAV 154 (834)
T ss_pred cCchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHH
Confidence 001256788999999999999999999999999999999999988873 34577788888
Q ss_pred HhcCCCCcceeecCCCCCCcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcchhhhhhhhcHHHHHH
Q 042234 156 ESTGSGRFKARIFPEGGGGRENL---KQEEIKQYYRSFLWSLVFTIPVFLTSMVFMYIPGIKHGLDTKIVNMLTIGEIIR 232 (658)
Q Consensus 156 ~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (658)
++.| |.+.+..+........ .+.+.+.+.+++++++++++|++++++....+. +++.. ...|+.
T Consensus 155 ~~~G---y~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~ 221 (834)
T PRK10671 155 EKAG---YGAEAIEDDAKRRERQQETAQATMKRFRWQAIVALAVGIPVMVWGMIGDNMM-----VTADN-----RSLWLV 221 (834)
T ss_pred HhcC---CCccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cCccc-----hhHHHH
Confidence 8888 5443222110011000 011223455666777777777766544211110 00000 012543
Q ss_pred -HHHHHhhhhhcCHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHH
Q 042234 233 -WVLSTPVQFIIGRRFYTGSYKALRHGSANLDVLISLGTNAAYFYSMYSVLRAATSPHFEGTDFFETSSMLISFILLGKY 311 (658)
Q Consensus 233 -~~l~~~v~~~~g~~~~~~a~~~l~~~~~~~d~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~y~~~~~~ll~~~~~~~~ 311 (658)
+++++|+++|+|||||++||++++++++|||+|+++++++||+||+|..+.........++.||++++++++++++|++
T Consensus 222 ~~~~~~~~~~~~g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 301 (834)
T PRK10671 222 IGLITLAVMVFAGGHFYRSAWKSLLNGSATMDTLVALGTGAAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHM 301 (834)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999876543111111235699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEEEecceeeecccccC
Q 042234 312 LEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQSHVNESMITG 391 (658)
Q Consensus 312 l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~g~~~vdes~LtG 391 (658)
+|.+.+.|+.+.+++|.++.|.+++++| ||+ +++|+.++|+|||+|.|++||+||+||+|++|++.||||+|||
T Consensus 302 le~~~~~~~~~~~~~L~~l~p~~a~~~~---~~~---~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~~vdeS~lTG 375 (834)
T PRK10671 302 LEARARQRSSKALEKLLDLTPPTARVVT---DEG---EKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTG 375 (834)
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEEe---CCc---EEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEceEEEeehhhcC
Confidence 9999999999999999999999999998 776 7899999999999999999999999999999999999999999
Q ss_pred CCcceeecCCCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHH
Q 042234 392 EARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAW 471 (658)
Q Consensus 392 Es~pv~k~~g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (658)
||.|+.|++||.||+||+|.+|.+.++|+++|.+|.++++.+++++++.+|+++++.+++++++|+|++++++++.+++|
T Consensus 376 Es~pv~k~~gd~V~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~~ 455 (834)
T PRK10671 376 EPIPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIW 455 (834)
T ss_pred CCCCEecCCCCEEEecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHHhcCeEEecchHhhhhcCCcEEEec
Q 042234 472 FLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFD 551 (658)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~D 551 (658)
++.+.. ..+..++.+++++++++|||+|++++|+++..++.+++++||++|+++++|.++++|++|||
T Consensus 456 ~~~~~~------------~~~~~~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~gilvk~~~~le~l~~v~~v~fD 523 (834)
T PRK10671 456 YFFGPA------------PQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFD 523 (834)
T ss_pred HHhCCc------------hHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHCCeEEecHHHHHhhcCCCEEEEc
Confidence 765321 13556788899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCceeEEEEEeccCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhccCCCCCCCCCCcccceeecCCeEEEEEc
Q 042234 552 KTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVH 631 (658)
Q Consensus 552 KTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gi~~~~~ 631 (658)
||||||+|+|++.++...++.+.++++.+++++|+.|+||+++||+++++.. ..+.+.++++++|+|+++.++
T Consensus 524 KTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hp~a~Ai~~~~~~~-------~~~~~~~~~~~~g~Gv~~~~~ 596 (834)
T PRK10671 524 KTGTLTEGKPQVVAVKTFNGVDEAQALRLAAALEQGSSHPLARAILDKAGDM-------TLPQVNGFRTLRGLGVSGEAE 596 (834)
T ss_pred CCCccccCceEEEEEEccCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHhhC-------CCCCcccceEecceEEEEEEC
Confidence 9999999999999998888888889999999999999999999999988642 134567899999999999999
Q ss_pred CeEEEEcchhhhhhcCCCCC
Q 042234 632 NKEIMVGNKSLMLDNNIDIP 651 (658)
Q Consensus 632 ~~~~~iGs~~~~~~~~i~~~ 651 (658)
|+.+.+|+++|+.+++++.+
T Consensus 597 g~~~~~G~~~~~~~~~~~~~ 616 (834)
T PRK10671 597 GHALLLGNQALLNEQQVDTK 616 (834)
T ss_pred CEEEEEeCHHHHHHcCCChH
Confidence 99999999999998887643
No 4
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=3.3e-74 Score=654.68 Aligned_cols=479 Identities=27% Similarity=0.430 Sum_probs=404.9
Q ss_pred ceeEEEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcCCCCcceeecCCCCCCc
Q 042234 96 MSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTGSGRFKARIFPEGGGGR 175 (658)
Q Consensus 96 ~~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~~ 175 (658)
..+.++.+.||+|++|++.+|+.+.+.+||..+++++.++++.+.|++.. . +++.+.+++.| |+...... .
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~G---y~a~~~~~----~ 122 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAG---FSLRDEQA----A 122 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhcc---cccccccc----h
Confidence 35778999999999999999999999999999999999999999998873 3 67778888888 55432211 0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcchhhhhhhhcHHHHHHHHHHHhhhhhcCHHHHHHHHHHH
Q 042234 176 ENLKQEEIKQYYRSFLWSLVFTIPVFLTSMVFMYIPGIKHGLDTKIVNMLTIGEIIRWVLSTPVQFIIGRRFYTGSYKAL 255 (658)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~g~~~~~~a~~~l 255 (658)
..+...+.+ ...+++ ++.+++|++++.+.. .++. ..|+.++++ .++.|+||+++||+.+
T Consensus 123 ~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~-------~~~~-------~~~~~~~~~---~~~~~~~~~~~a~~~l 181 (741)
T PRK11033 123 AAAPESRLK-SENLPL---ITLAVMMAISWGLEQ-------FNHP-------FGQLAFIAT---TLVGLYPIARKALRLI 181 (741)
T ss_pred hhhHHHHHH-HHHHHH---HHHHHHHHHHHHHhh-------hhhH-------HHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 001111111 111111 111222222221100 0000 023444444 3678899999999999
Q ss_pred HcCCC-CcchHHHHHHHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCe
Q 042234 256 RHGSA-NLDVLISLGTNAAYFYSMYSVLRAATSPHFEGTDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPET 334 (658)
Q Consensus 256 ~~~~~-~~d~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~ 334 (658)
|++++ |||+|++++++++++++ . |+.++++++++++++++|.++++|+++.+++|+++.|.+
T Consensus 182 ~~~~~~~~~~L~~~a~~~a~~~~----------------~-~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~ 244 (741)
T PRK11033 182 RSGSPFAIETLMSVAAIGALFIG----------------A-TAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPET 244 (741)
T ss_pred HcCCCCCccHHHHHHHHHHHHHc----------------c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 99885 99999999999887753 1 345678889999999999999999999999999999999
Q ss_pred EEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEEEecceeeecccccCCCcceeecCCCeeeeeceecCce
Q 042234 335 ATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQSHVNESMITGEARPVAKRKGYTVIGGTVNENGV 414 (658)
Q Consensus 335 ~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~g~~~vdes~LtGEs~pv~k~~g~~v~~Gt~~~~g~ 414 (658)
++++| ||+ +++|++++|+|||+|.|++||+||+||+|++|++.||||+|||||.|+.|++|+.||+||++.+|.
T Consensus 245 a~vir---~g~---~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~~vdes~lTGEs~Pv~k~~Gd~V~aGt~~~~G~ 318 (741)
T PRK11033 245 ATRLR---DGE---REEVAIADLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGESIPVERATGEKVPAGATSVDRL 318 (741)
T ss_pred EEEEE---CCE---EEEEEHHHCCCCCEEEECCCCEEecceEEEECcEEeecccccCCCCCEecCCCCeeccCCEEcCce
Confidence 99998 887 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHH
Q 042234 415 LHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQL 494 (658)
Q Consensus 415 ~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (658)
+.++|+++|.+|.++++.+++++++.+++|+++.+|+++++|+|++++++++++++|++... .+|..
T Consensus 319 ~~i~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~~~-------------~~~~~ 385 (741)
T PRK11033 319 VTLEVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLFA-------------APWQE 385 (741)
T ss_pred EEEEEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------------CCHHH
Confidence 99999999999999999999999999999999999999999999999999999988754321 14566
Q ss_pred HHHHHhheeeeeccccccchHHHHHHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccCCCH
Q 042234 495 ALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVL 574 (658)
Q Consensus 495 ~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~ 574 (658)
.+.+++++++++|||+|.+++|+++..++.+++|+||++|+.+++|.|+++|++|||||||||+|+|+|.++.+.++.++
T Consensus 386 ~i~~a~svlviacPcaL~latP~a~~~~l~~aar~gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~ 465 (741)
T PRK11033 386 WIYRGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPATGISE 465 (741)
T ss_pred HHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEecCCCCH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHhccCCCCCCCCCCcccceeecCCeEEEEEcCeEEEEcchhhhhh
Q 042234 575 RDFYEVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMVGNKSLMLD 645 (658)
Q Consensus 575 ~~~~~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gi~~~~~~~~~~iGs~~~~~~ 645 (658)
++++.+++++|+.|+||+++||++++++++. ..+..+++++++|+|+++.++|+++.+|+++|+.+
T Consensus 466 ~~~l~~aa~~e~~s~hPia~Ai~~~a~~~~~-----~~~~~~~~~~~~g~Gv~~~~~g~~~~ig~~~~~~~ 531 (741)
T PRK11033 466 SELLALAAAVEQGSTHPLAQAIVREAQVRGL-----AIPEAESQRALAGSGIEGQVNGERVLICAPGKLPP 531 (741)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-----CCCCCcceEEEeeEEEEEEECCEEEEEecchhhhh
Confidence 9999999999999999999999999987542 23556788999999999999999999999999865
No 5
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=6.3e-71 Score=611.73 Aligned_cols=379 Identities=49% Similarity=0.814 Sum_probs=349.4
Q ss_pred cCHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042234 243 IGRRFYTGSYKALRHGSANLDVLISLGTNAAYFYSMYSVLRAATSPHFEGTDFFETSSMLISFILLGKYLEVLAKGKTSE 322 (658)
Q Consensus 243 ~g~~~~~~a~~~l~~~~~~~d~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~ 322 (658)
+||||+++||++++++++|||+|++++++++|+||+|.++.....+....+.||++++++++++++++++|.++++|+++
T Consensus 1 ~g~~~~~~a~~~l~~~~~~md~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~a~~ 80 (562)
T TIGR01511 1 AGRPFYKSAWKALRHKAPNMDTLIALGTTVAYGYSLVALLANQVLTGLHVHTFFDASAMLITFILLGRWLEMLAKGRASD 80 (562)
T ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999998876432222223579999999999999999999999999999
Q ss_pred HHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEEEecceeeecccccCCCcceeecCCC
Q 042234 323 AIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQSHVNESMITGEARPVAKRKGY 402 (658)
Q Consensus 323 ~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~g~~~vdes~LtGEs~pv~k~~g~ 402 (658)
.+++|.++.|.+++++| ++|+ +++|++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.|++|+
T Consensus 81 ~~~~L~~~~p~~a~~~~--~~~~---~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~gd 155 (562)
T TIGR01511 81 ALSKLAKLQPSTATLLT--KDGS---IEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGESEVDESLVTGESLPVPKKVGD 155 (562)
T ss_pred HHHHHHhcCCCEEEEEE--CCCe---EEEEEHHHCCCCCEEEECCCCEecCceEEEECceEEehHhhcCCCCcEEcCCCC
Confidence 99999999999999987 2454 689999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 042234 403 TVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPE 482 (658)
Q Consensus 403 ~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (658)
.||+||++.+|.+.++|+++|.+|.++++.+++++++.+|+++++.+++++++|+|++++++++.++.|.
T Consensus 156 ~V~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~~~~---------- 225 (562)
T TIGR01511 156 PVIAGTVNGTGSLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWL---------- 225 (562)
T ss_pred EEEeeeEECCceEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999888877664
Q ss_pred CcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCcee
Q 042234 483 SWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPV 562 (658)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~ 562 (658)
.++.+++++++++|||+|++++|+++..++.+++++||++|+++++|.|+++|++|||||||||+|+|+
T Consensus 226 -----------~~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~ 294 (562)
T TIGR01511 226 -----------FALEFAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPT 294 (562)
T ss_pred -----------HHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEECCCCCCcCCCEE
Confidence 256778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhccCCCCCCCCCCcccceeecCCeEEEEEcCeEEEEcchhh
Q 042234 563 VVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMVGNKSL 642 (658)
Q Consensus 563 v~~~~~~~~~~~~~~~~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gi~~~~~~~~~~iGs~~~ 642 (658)
+.++.+.++.++++++.+++++|++|+||+++||++++++.+. ....++++++++|+|+++.++|+++++||++|
T Consensus 295 v~~i~~~~~~~~~~~l~~aa~~e~~s~HPia~Ai~~~~~~~~~-----~~~~~~~~~~~~g~Gi~~~~~g~~~~iG~~~~ 369 (562)
T TIGR01511 295 VTDVHVFGDRDRTELLALAAALEAGSEHPLAKAIVSYAKEKGI-----TLVEVSDFKAIPGIGVEGTVEGTKIQLGNEKL 369 (562)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC-----CcCCCCCeEEECCceEEEEECCEEEEEECHHH
Confidence 9999988888889999999999999999999999999987542 12346788999999999999999999999999
Q ss_pred hhhcCCCCCh
Q 042234 643 MLDNNIDIPP 652 (658)
Q Consensus 643 ~~~~~i~~~~ 652 (658)
++++|+++++
T Consensus 370 ~~~~~~~~~~ 379 (562)
T TIGR01511 370 LGENAIKIDG 379 (562)
T ss_pred HHhCCCCCCh
Confidence 9988887653
No 6
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=8.3e-59 Score=516.69 Aligned_cols=344 Identities=45% Similarity=0.737 Sum_probs=314.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeec
Q 042234 262 LDVLISLGTNAAYFYSMYSVLRAATSPHFEGTDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLD 341 (658)
Q Consensus 262 ~d~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~ 341 (658)
||+|++++++.+|++|.| ..+++++++++++++++.++++|+++.+++|.+..|.+++++|
T Consensus 1 ~d~l~~~~~~~~~~~~~~-----------------~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r-- 61 (556)
T TIGR01525 1 MDLLMALATIAAYAMGLV-----------------LEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQ-- 61 (556)
T ss_pred CcHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE--
Confidence 799999999999988754 2467888999999999999999999999999999999999998
Q ss_pred CCC-CceeeEEeeCCCCCCCCEEEEeCCCeeeecEEEEecceeeecccccCCCcceeecCCCeeeeeceecCceEEEEEE
Q 042234 342 EDG-NVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQSHVNESMITGEARPVAKRKGYTVIGGTVNENGVLHIKAT 420 (658)
Q Consensus 342 ~~g-~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~g~~~vdes~LtGEs~pv~k~~g~~v~~Gt~~~~g~~~~~v~ 420 (658)
|| + ++++++++|+|||+|.+++||+|||||+|++|++.||||+|||||.|+.|.+|+.+|+||.+.+|.++++|+
T Consensus 62 -~~g~---~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~g~~~~~v~ 137 (556)
T TIGR01525 62 -GDGS---EEEVPVEELQVGDIVIVRPGERIPVDGVVISGESEVDESALTGESMPVEKKEGDEVFAGTINGDGSLTIRVT 137 (556)
T ss_pred -CCCe---EEEEEHHHCCCCCEEEECCCCEeccceEEEecceEEeehhccCCCCCEecCCcCEEeeceEECCceEEEEEE
Confidence 64 6 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHh
Q 042234 421 RVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGI 500 (658)
Q Consensus 421 ~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (658)
++|.+|+++++.+++.+++.+++++++.+++++.+++++++++++++++.|++... . .++.+++
T Consensus 138 ~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~~--------------~--~~~~~~~ 201 (556)
T TIGR01525 138 KLGEDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGA--------------L--GALYRAL 201 (556)
T ss_pred EecccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------c--hHHHHHH
Confidence 99999999999999999999999999999999999999999999999888876432 1 5778899
Q ss_pred heeeeeccccccchHHHHHHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccCCC--HHHHH
Q 042234 501 SVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMV--LRDFY 578 (658)
Q Consensus 501 ~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~--~~~~~ 578 (658)
++++++|||+|++++|+++..+..+++++|+++|+++++|.|+++|++|||||||||+|+|++.++.+.++.+ .++++
T Consensus 202 ~vlv~~~P~al~l~~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l 281 (556)
T TIGR01525 202 AVLVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDDASISEEELL 281 (556)
T ss_pred HHHhhccccchhehhHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCCCCccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877655 78899
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHhccCCCCCCCCCCcc-cceeecCCeEEEEEcC-eEEEEcchhhhhhcCCCC
Q 042234 579 EVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAH-DFISITGHGVKATVHN-KEIMVGNKSLMLDNNIDI 650 (658)
Q Consensus 579 ~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~-~~~~~~g~Gi~~~~~~-~~~~iGs~~~~~~~~i~~ 650 (658)
.+++++|+.+.||+++||++++++.+... +. . ++++++|+|+++.++| .++++|+++|++..+.+.
T Consensus 282 ~~a~~~e~~~~hp~~~Ai~~~~~~~~~~~-----~~-~~~~~~~~~~gi~~~~~g~~~~~lg~~~~~~~~~~~~ 349 (556)
T TIGR01525 282 ALAAALEQSSSHPLARAIVRYAKKRGLEL-----PK-QEDVEEVPGKGVEATVDGQEEVRIGNPRLLELAAEPI 349 (556)
T ss_pred HHHHHHhccCCChHHHHHHHHHHhcCCCc-----cc-ccCeeEecCCeEEEEECCeeEEEEecHHHHhhcCCCc
Confidence 99999999999999999999998764321 11 2 6778899999999999 799999999995544444
No 7
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=6.9e-59 Score=513.94 Aligned_cols=335 Identities=38% Similarity=0.627 Sum_probs=308.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeec
Q 042234 262 LDVLISLGTNAAYFYSMYSVLRAATSPHFEGTDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLD 341 (658)
Q Consensus 262 ~d~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~ 341 (658)
||+|+++++.++++++ .||++ ++++++++++++++.++++|+++.+++|.++.|.+++|+|
T Consensus 1 ~~~l~~~a~~~~~~~~----------------~~~~~-~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r-- 61 (536)
T TIGR01512 1 VDLLMALAALGAVAIG----------------EYLEG-ALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLR-- 61 (536)
T ss_pred CcHHHHHHHHHHHHHh----------------hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE--
Confidence 7899999998888764 36666 6778899999999999999999999999999999999998
Q ss_pred CCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEEEecceeeecccccCCCcceeecCCCeeeeeceecCceEEEEEEE
Q 042234 342 EDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQSHVNESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATR 421 (658)
Q Consensus 342 ~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~g~~~vdes~LtGEs~pv~k~~g~~v~~Gt~~~~g~~~~~v~~ 421 (658)
||+ ++++++++|+|||+|.+++||+|||||++++|++.||||+|||||.|+.|++|+.+|+||.+.+|.++++|++
T Consensus 62 -~g~---~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~G~~~~~V~~ 137 (536)
T TIGR01512 62 -GGS---LEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTSTVDESALTGESVPVEKAPGDEVFAGAINLDGVLTIVVTK 137 (536)
T ss_pred -CCE---EEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcEEEEecccCCCCCcEEeCCCCEEEeeeEECCceEEEEEEE
Confidence 886 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhh
Q 042234 422 VGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGIS 501 (658)
Q Consensus 422 ~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (658)
+|.+|.++++.+++++++.+++++++.+++++.++++++++++++.++.|++... +..++.++++
T Consensus 138 ~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~s 202 (536)
T TIGR01512 138 LPADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLKR---------------WPFWVYRALV 202 (536)
T ss_pred eccccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------cHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888877765321 1227788999
Q ss_pred eeeeeccccccchHHHHHHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccCCCHHHHHHHH
Q 042234 502 VMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVV 581 (658)
Q Consensus 502 vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~ 581 (658)
+++++|||+|++++|+++..+..+++++|+++|+++++|.++++|++|||||||||+|+|++.++.+ .+++.++
T Consensus 203 vlv~~~P~aL~la~~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~------~~~l~~a 276 (536)
T TIGR01512 203 LLVVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVP------AEVLRLA 276 (536)
T ss_pred HHhhcCccccccchHHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeH------HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999865 3789999
Q ss_pred HHhhccCCCHHHHHHHHHHHhccCCCCCCCCCCcccceeecCCeEEEEEcCeEEEEcchhhhhhcCCC
Q 042234 582 AATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKATVHNKEIMVGNKSLMLDNNID 649 (658)
Q Consensus 582 ~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gi~~~~~~~~~~iGs~~~~~~~~i~ 649 (658)
+++|+++.||+++||++++++++ .++++++++|+|+++.++|.++++|+++|+++++++
T Consensus 277 ~~~e~~~~hp~~~Ai~~~~~~~~---------~~~~~~~~~g~gi~~~~~g~~~~ig~~~~~~~~~~~ 335 (536)
T TIGR01512 277 AAAEQASSHPLARAIVDYARKRE---------NVESVEEVPGEGVRAVVDGGEVRIGNPRSLEAAVGA 335 (536)
T ss_pred HHHhccCCCcHHHHHHHHHHhcC---------CCcceEEecCCeEEEEECCeEEEEcCHHHHhhcCCc
Confidence 99999999999999999998642 346778999999999999999999999999877754
No 8
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=8.3e-53 Score=480.91 Aligned_cols=331 Identities=23% Similarity=0.337 Sum_probs=284.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeec
Q 042234 295 FFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASD 374 (658)
Q Consensus 295 y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD 374 (658)
|.+ +++++++++++..++.++++|+++.+++|.++.+.+++|+| ||+ +++|++++|+|||+|.+++||+||||
T Consensus 55 ~~~-~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~R---dg~---~~~I~~~~Lv~GDiV~l~~Gd~IPaD 127 (755)
T TIGR01647 55 WVD-FVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVLR---DGK---WQEIPASELVPGDVVRLKIGDIVPAD 127 (755)
T ss_pred hhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE---CCE---EEEEEhhhCcCCCEEEECCCCEEece
Confidence 444 45566777888899999999999999999999999999999 897 89999999999999999999999999
Q ss_pred EEEEecc-eeeecccccCCCcceeecCCCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHh
Q 042234 375 GYVLWGQ-SHVNESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRIS 453 (658)
Q Consensus 375 ~~vl~g~-~~vdes~LtGEs~pv~k~~g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~ 453 (658)
|++++|+ ..||||+|||||.|+.|++||.+|+||.+.+|.++++|++||.+|.+|++.+++++++..++++|+.+++++
T Consensus 128 g~vi~g~~~~VDeS~LTGES~PV~K~~~~~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~ 207 (755)
T TIGR01647 128 CRLFEGDYIQVDQAALTGESLPVTKKTGDIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIG 207 (755)
T ss_pred EEEEecCceEEEcccccCCccceEeccCCeeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHHHHHHHH
Confidence 9999998 799999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHHhcCeEE
Q 042234 454 KYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLI 533 (658)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~ 533 (658)
+++++++++++++.+++|++... .++..++.+++++++++|||+||+++|+++..+.++++|+|+++
T Consensus 208 ~~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~gilv 274 (755)
T TIGR01647 208 LFLIVLIGVLVLIELVVLFFGRG-------------ESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIV 274 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-------------CCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCCeEE
Confidence 99999988888887777665211 14677888999999999999999999999999999999999999
Q ss_pred ecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccC-CCHHHHHHHHHHh-hccCCCHHHHHHHHHHHhccCCCCCCC
Q 042234 534 KGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKN-MVLRDFYEVVAAT-EVNSEHPLAKAIVEYAKKFREDEDNPL 611 (658)
Q Consensus 534 k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~-~~~~~~~~~~~~~-~~~s~hp~~~ai~~~~~~~~~~~~~~~ 611 (658)
|+.+++|.||.+|++|||||||||+|+|++.+++..++ .+.++++.+++.+ +..+.||+++||++++++.+.......
T Consensus 275 k~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~l~~a~~~~~~~~~~pi~~Ai~~~~~~~~~~~~~~~ 354 (755)
T TIGR01647 275 TRLTAIEELAGMDILCSDKTGTLTLNKLSIDEILPFFNGFDKDDVLLYAALASREEDQDAIDTAVLGSAKDLKEARDGYK 354 (755)
T ss_pred cccHHHHhccCCcEEEecCCCccccCceEEEEEEecCCCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhHHHHhcCc
Confidence 99999999999999999999999999999999988654 6778888888765 478899999999998875431100000
Q ss_pred CCCcccceeecCCeEEEEEc----CeE--EEEcchhhhhhc
Q 042234 612 WPEAHDFISITGHGVKATVH----NKE--IMVGNKSLMLDN 646 (658)
Q Consensus 612 ~~~~~~~~~~~g~Gi~~~~~----~~~--~~iGs~~~~~~~ 646 (658)
.....+|. ..++++++.++ |+. +..|+++++.+.
T Consensus 355 ~~~~~pf~-~~~k~~~~~v~~~~~g~~~~~~kGa~e~il~~ 394 (755)
T TIGR01647 355 VLEFVPFD-PVDKRTEATVEDPETGKRFKVTKGAPQVILDL 394 (755)
T ss_pred eEEEeccC-CCCCeEEEEEEeCCCceEEEEEeCChHHHHHh
Confidence 01111222 25889988873 544 457999998543
No 9
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=1.9e-51 Score=453.65 Aligned_cols=339 Identities=23% Similarity=0.339 Sum_probs=277.5
Q ss_pred cchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-eEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCe
Q 042234 294 DFFETSSM--LISFILLGKYLEVLAKGKTSEAIAKLMDLAPE-TATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAK 370 (658)
Q Consensus 294 ~y~~~~~~--ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~-~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~ 370 (658)
.||+.++. +++.++++.++|.++++|+.+.+++|.++.|+ .++|+| +||+ +++|++++|++||+|.+++||+
T Consensus 63 ~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr--~dg~---~~~V~~~~L~~GDiV~V~~Gd~ 137 (675)
T TIGR01497 63 ALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLR--DDGA---IDKVPADQLKKGDIVLVEAGDV 137 (675)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEe--eCCE---EEEEEHHHCCCCCEEEECCCCE
Confidence 57765433 33446899999999999999999999998877 487875 2676 7899999999999999999999
Q ss_pred eeecEEEEecceeeecccccCCCcceeecCCCe---eeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHH
Q 042234 371 VASDGYVLWGQSHVNESMITGEARPVAKRKGYT---VIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQK 447 (658)
Q Consensus 371 iPaD~~vl~g~~~vdes~LtGEs~pv~k~~g~~---v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~ 447 (658)
||+||++++|.+.||||+|||||.|+.|++|+. +|+||.+.+|++.++|+++|.+|.++++.+++++++.+|+|+|.
T Consensus 138 IPaDG~vieG~~~VDESaLTGES~PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~ 217 (675)
T TIGR01497 138 IPCDGEVIEGVASVDESAITGESAPVIKESGGDFASVTGGTRILSDWLVVECTANPGETFLDRMIALVEGAQRRKTPNEI 217 (675)
T ss_pred EeeeEEEEEccEEEEcccccCCCCceeecCCCCcceeecCcEEEeeEEEEEEEEecccCHHHHHHHHHHhcccCCChHHH
Confidence 999999999999999999999999999999974 99999999999999999999999999999999999999999997
Q ss_pred HHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHH
Q 042234 448 FADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGA 527 (658)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~ 527 (658)
..+.+..++..+.++ +. +.+|.+.. +. ....++..++++++++|||+++...+.....++.+++
T Consensus 218 ~l~~l~~~l~~v~li-~~--~~~~~~~~-~~------------~~~~~~~~lvallV~aiP~aLg~l~~av~iag~~r~a 281 (675)
T TIGR01497 218 ALTILLIALTLVFLL-VT--ATLWPFAA-YG------------GNAISVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVL 281 (675)
T ss_pred HHHHHHHHHHHHHHH-HH--HHHHHHHH-hc------------ChhHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHH
Confidence 777665544333222 22 22232211 10 1122466678899999999999888888888999999
Q ss_pred hcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhccCCC
Q 042234 528 SQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAKKFREDE 607 (658)
Q Consensus 528 ~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~hp~~~ai~~~~~~~~~~~ 607 (658)
++|+++|+.+++|.+|++|++|||||||||+|+|++.++++.++.+.++++.+++.++..++||.++||++++++.+...
T Consensus 282 r~gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~aa~~~~~s~hP~a~Aiv~~a~~~~~~~ 361 (675)
T TIGR01497 282 GFNVIATSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPAQGVDEKTLADAAQLASLADDTPEGKSIVILAKQLGIRE 361 (675)
T ss_pred HCCeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEecCCCcHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999988888888899999999999999999999999998754321
Q ss_pred CCCCCCCcccceeecCC-eEEEE--EcCeEEEEcchh----hhhhcCCCCChhh
Q 042234 608 DNPLWPEAHDFISITGH-GVKAT--VHNKEIMVGNKS----LMLDNNIDIPPDA 654 (658)
Q Consensus 608 ~~~~~~~~~~~~~~~g~-Gi~~~--~~~~~~~iGs~~----~~~~~~i~~~~~~ 654 (658)
... .....++.+.+|. |+++. .+|+.+.+|+++ |++++|..+|++.
T Consensus 362 ~~~-~~~~~~~~pf~~~~~~sg~~~~~g~~~~kGa~e~i~~~~~~~g~~~~~~~ 414 (675)
T TIGR01497 362 DDV-QSLHATFVEFTAQTRMSGINLDNGRMIRKGAVDAIKRHVEANGGHIPTDL 414 (675)
T ss_pred ccc-ccccceEEEEcCCCcEEEEEEeCCeEEEECCHHHHHHHHHhcCCCCcHHH
Confidence 111 1122345666666 67775 478899999985 4556677776544
No 10
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=1.9e-51 Score=454.77 Aligned_cols=334 Identities=22% Similarity=0.314 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-eEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEE
Q 042234 299 SSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPE-TATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYV 377 (658)
Q Consensus 299 ~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~-~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~v 377 (658)
.+.+++.++++.++|.++++|+++.+++|+++.|. +++|+| ||+ ++++|++++|++||+|.+++||+||+||+|
T Consensus 69 ~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vir---~g~--~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~v 143 (679)
T PRK01122 69 TLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKLR---EPG--AAEEVPATELRKGDIVLVEAGEIIPADGEV 143 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEE---CCC--EEEEEEHHHcCCCCEEEEcCCCEEEEEEEE
Confidence 34455667899999999999999999999998886 799998 664 268899999999999999999999999999
Q ss_pred EecceeeecccccCCCcceeecCCCe---eeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhh
Q 042234 378 LWGQSHVNESMITGEARPVAKRKGYT---VIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISK 454 (658)
Q Consensus 378 l~g~~~vdes~LtGEs~pv~k~~g~~---v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 454 (658)
++|.+.||||+|||||.|+.|++|+. +|+||.+.+|++.++|+++|.+|.++++.+++++++.+|+|++...+.+..
T Consensus 144 ieG~a~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l~~ 223 (679)
T PRK01122 144 IEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTILLA 223 (679)
T ss_pred EEccEEEEcccccCCCCceEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 99999999999999999999999988 999999999999999999999999999999999999999999987777666
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHHhcCeEEe
Q 042234 455 YFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIK 534 (658)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k 534 (658)
++..+.+++++..+.++++.+. . .++.+++++++++|||+++..+|.....++.+++|+|+++|
T Consensus 224 ~l~~i~l~~~~~~~~~~~~~g~--------------~--~~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak~gvLvk 287 (679)
T PRK01122 224 GLTIIFLLVVATLPPFAAYSGG--------------A--LSITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQANVIAT 287 (679)
T ss_pred hhhHHHHHHHHHHHHHHHHhCc--------------h--HHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhcCCeeec
Confidence 5554433333222222111110 1 26777889999999999999999999999999999999999
Q ss_pred cchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhc-cCCCCCCCCC
Q 042234 535 GGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAKKF-REDEDNPLWP 613 (658)
Q Consensus 535 ~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~hp~~~ai~~~~~~~-~~~~~~~~~~ 613 (658)
+.+++|.+|++|++|||||||||+|+|++.++++.++.+.++++.+++.++..+.||.++||++++++. +........+
T Consensus 288 ~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~a~~~s~~s~hP~~~AIv~~a~~~~~~~~~~~~~~ 367 (679)
T PRK01122 288 SGRAVEAAGDVDTLLLDKTGTITLGNRQASEFLPVPGVTEEELADAAQLSSLADETPEGRSIVVLAKQRFNLRERDLQSL 367 (679)
T ss_pred CchHHHHhcCCCEEEEeCCCCCcCCcEEEEEEEeCCCCCHHHHHHHHHHhcCCCCCchHHHHHHHHHhhcCCCchhhccc
Confidence 999999999999999999999999999999999888888889999999999999999999999998762 2111000001
Q ss_pred CcccceeecC-CeEEEE-EcCeEEEEcchh----hhhhcCCCCChhh
Q 042234 614 EAHDFISITG-HGVKAT-VHNKEIMVGNKS----LMLDNNIDIPPDA 654 (658)
Q Consensus 614 ~~~~~~~~~g-~Gi~~~-~~~~~~~iGs~~----~~~~~~i~~~~~~ 654 (658)
..++...++ +|+++. ++|+.+++|+++ |+++.|.++|++.
T Consensus 368 -~~~~~pF~s~~~~~gv~~~g~~~~kGa~e~il~~~~~~g~~~~~~~ 413 (679)
T PRK01122 368 -HATFVPFSAQTRMSGVDLDGREIRKGAVDAIRRYVESNGGHFPAEL 413 (679)
T ss_pred -cceeEeecCcCceEEEEECCEEEEECCHHHHHHHHHhcCCcChHHH
Confidence 112222223 355664 688999999996 4556677776544
No 11
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=1.6e-49 Score=439.02 Aligned_cols=323 Identities=26% Similarity=0.369 Sum_probs=259.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCC-eEE-EEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEEEecc
Q 042234 304 SFILLGKYLEVLAKGKTSEAIAKLMDLAPE-TAT-LLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQ 381 (658)
Q Consensus 304 ~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~-~~~-v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~g~ 381 (658)
+..+++.++|.++++|+++.+++|+++.+. +++ |.| ||+ +++|++++|+|||+|.+++||+||+||++++|.
T Consensus 74 ~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~r---dg~---~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~ 147 (673)
T PRK14010 74 LTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIKQ---DGS---YEMIDASDLKKGHIVRVATGEQIPNDGKVIKGL 147 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEe---CCE---EEEEEHHHcCCCCEEEECCCCcccCCeEEEEcc
Confidence 344689999999999999999999999886 786 556 887 789999999999999999999999999999999
Q ss_pred eeeecccccCCCcceeecCC---CeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhH
Q 042234 382 SHVNESMITGEARPVAKRKG---YTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVP 458 (658)
Q Consensus 382 ~~vdes~LtGEs~pv~k~~g---~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (658)
+.||||+|||||.|+.|++| +.+|+||.+.+|++.++|+++|.+|.++++.+++++++.+|+|++.....+...+
T Consensus 148 ~~VDESaLTGES~PV~K~~g~d~~~V~aGT~v~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l~~~l-- 225 (673)
T PRK14010 148 ATVDESAITGESAPVIKESGGDFDNVIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTLLMTL-- 225 (673)
T ss_pred eEEecchhcCCCCceeccCCCccCeeecCceeecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHHHHHH--
Confidence 99999999999999999999 8899999999999999999999999999999999999999999986544433222
Q ss_pred HHHHHHHHHHHHHHH-hhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHHhcCeEEecch
Q 042234 459 LVIILSFSTWLAWFL-AGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQ 537 (658)
Q Consensus 459 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~ 537 (658)
.+.++.++.|++ ...+ ..+...+...+++.++.+||+|+..+|+....++.+++|+|+++|+.+
T Consensus 226 ---~ii~l~~~~~~~~~~~~------------~~~~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak~gvLvk~~~ 290 (673)
T PRK14010 226 ---TIIFLVVILTMYPLAKF------------LNFNLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQFNILAKSGR 290 (673)
T ss_pred ---hHHHHHHHHHHHHHHhh------------ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCEEEeCcH
Confidence 112222222221 1100 022334556667777788999999999999999999999999999999
Q ss_pred HhhhhcCCcEEEecCCCcccCCceeEEEEEeccCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhccCCCCCCCCCCccc
Q 042234 538 ALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHD 617 (658)
Q Consensus 538 ~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~ 617 (658)
++|.+|++|++|||||||||+|++.+.++.+.++.+.++++.+++.++..+.||+++||++++++.+.+.. ....+..+
T Consensus 291 avE~lg~v~vI~~DKTGTLT~Gn~~~~~~~~~~~~~~~~ll~~a~~~~~~s~~P~~~AIv~~a~~~~~~~~-~~~~~~~p 369 (673)
T PRK14010 291 SVETCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFERLVKAAYESSIADDTPEGRSIVKLAYKQHIDLP-QEVGEYIP 369 (673)
T ss_pred HHHHhhCCCEEEEeCCCcCCCCCeEEEEEEeCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHcCCCch-hhhcceec
Confidence 99999999999999999999999888888777777777889988888999999999999999987542110 00011122
Q ss_pred ceee-cCCeEEEEEcCeEEEEcchhhhh----hcCCCCCh
Q 042234 618 FISI-TGHGVKATVHNKEIMVGNKSLML----DNNIDIPP 652 (658)
Q Consensus 618 ~~~~-~g~Gi~~~~~~~~~~iGs~~~~~----~~~i~~~~ 652 (658)
|... .++|+. ++|+.+..|+++++. ++|...|.
T Consensus 370 F~~~~k~~gv~--~~g~~i~kGa~~~il~~~~~~g~~~~~ 407 (673)
T PRK14010 370 FTAETRMSGVK--FTTREVYKGAPNSMVKRVKEAGGHIPV 407 (673)
T ss_pred cccccceeEEE--ECCEEEEECCHHHHHHHhhhcCCCCch
Confidence 3222 255654 678899999999884 34444444
No 12
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=1.2e-48 Score=451.99 Aligned_cols=330 Identities=19% Similarity=0.227 Sum_probs=273.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecC---CCCceeeEEeeCCCCCCCCEEEEeCCCe
Q 042234 294 DFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDE---DGNVISEEEIDSRLIQRNDVIKIIPGAK 370 (658)
Q Consensus 294 ~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~---~g~~~~~~~i~~~~l~~GDii~v~~ge~ 370 (658)
.|. .+++++++++++.+++.++++|+.+.+++|.++.+.+++|+|.+. +|+ +++|++++|+|||+|.+++||+
T Consensus 121 ~~~-~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~ViR~g~~~~~g~---~~~I~~~eLvpGDiV~l~~Gd~ 196 (902)
T PRK10517 121 DLF-AAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGENG---WLEIPIDQLVPGDIIKLAAGDM 196 (902)
T ss_pred cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCccCCCCe---EEEEEHHhCCCCCEEEECCCCE
Confidence 344 446677888999999999999999999999999999999999211 055 7899999999999999999999
Q ss_pred eeecEEEEecce-eeecccccCCCcceeecCCC-------------eeeeeceecCceEEEEEEEecCCcHHHHHHHHHH
Q 042234 371 VASDGYVLWGQS-HVNESMITGEARPVAKRKGY-------------TVIGGTVNENGVLHIKATRVGSESALAQIVRLVE 436 (658)
Q Consensus 371 iPaD~~vl~g~~-~vdes~LtGEs~pv~k~~g~-------------~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~ 436 (658)
|||||++++|+. .||||+|||||.|+.|.+++ .+|+||.+.+|.+.++|++||.+|.+|++.+++.
T Consensus 197 IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~GkI~~~v~ 276 (902)
T PRK10517 197 IPADLRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGRVS 276 (902)
T ss_pred EeeeEEEEEcCceEEEecCcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHHHHHHHhh
Confidence 999999999975 99999999999999998874 7999999999999999999999999999999999
Q ss_pred HHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHH
Q 042234 437 SAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATP 516 (658)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~ 516 (658)
++..+++|+++.++++++++..+.++++.++++++++... ++..++.+++++++++|||+||++++
T Consensus 277 ~~~~~~t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~~~~~--------------~~~~~l~~alsv~V~~~Pe~LP~~vt 342 (902)
T PRK10517 277 EQDSEPNAFQQGISRVSWLLIRFMLVMAPVVLLINGYTKG--------------DWWEAALFALSVAVGLTPEMLPMIVT 342 (902)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcC--------------CHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 8888899999999999999988888777776665543321 45678888999999999999999999
Q ss_pred HHHHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccCCCHHHHHHHHHHh---hccCCCHHH
Q 042234 517 TAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAAT---EVNSEHPLA 593 (658)
Q Consensus 517 ~~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~s~hp~~ 593 (658)
+++..+..+++++|+++|+.+++|.||++|++|||||||||+|+|.+.++....+.+.++++.+++.. +....||++
T Consensus 343 ~~la~g~~~mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~~~~~~~~~~ll~~a~l~~~~~~~~~~p~d 422 (902)
T PRK10517 343 STLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGLKNLLD 422 (902)
T ss_pred HHHHHHHHHHHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEecCCCCCHHHHHHHHHhcCCcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999988655555667777776642 234579999
Q ss_pred HHHHHHHHhccCCCCCCCCCCcccceeec----CCeEEEEEc---C--eEEEEcchhhhh
Q 042234 594 KAIVEYAKKFREDEDNPLWPEAHDFISIT----GHGVKATVH---N--KEIMVGNKSLML 644 (658)
Q Consensus 594 ~ai~~~~~~~~~~~~~~~~~~~~~~~~~~----g~Gi~~~~~---~--~~~~iGs~~~~~ 644 (658)
.|++++++...... .......+.++| .++++..++ + ..+..|+++.+.
T Consensus 423 ~All~~a~~~~~~~---~~~~~~~~~~~pFds~~k~msvvv~~~~~~~~~~~KGa~e~il 479 (902)
T PRK10517 423 TAVLEGVDEESARS---LASRWQKIDEIPFDFERRRMSVVVAENTEHHQLICKGALEEIL 479 (902)
T ss_pred HHHHHHHHhcchhh---hhhcCceEEEeeeCCCcceEEEEEEECCCeEEEEEeCchHHHH
Confidence 99999986532110 001112222332 467776653 2 246778887653
No 13
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=1.4e-48 Score=451.67 Aligned_cols=327 Identities=18% Similarity=0.208 Sum_probs=274.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeec---CCCCceeeEEeeCCCCCCCCEEEEeCCCeeeec
Q 042234 298 TSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLD---EDGNVISEEEIDSRLIQRNDVIKIIPGAKVASD 374 (658)
Q Consensus 298 ~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~---~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD 374 (658)
.+++++++++++.+++.++++|+++.+++|.++.+.+++|+|.. .||+ +++|++++|+|||+|.+++||+||||
T Consensus 90 ~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~~dg~---~~~I~~~eLv~GDiV~l~~Gd~VPaD 166 (867)
T TIGR01524 90 ATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVLRVINENGNGS---MDEVPIDALVPGDLIELAAGDIIPAD 166 (867)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEEEecccCCCCe---EEEEEhhcCCCCCEEEECCCCEEccc
Confidence 45667788888999999999999999999999999999999821 1576 88999999999999999999999999
Q ss_pred EEEEecce-eeecccccCCCcceeecCCC-------------eeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhh
Q 042234 375 GYVLWGQS-HVNESMITGEARPVAKRKGY-------------TVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQM 440 (658)
Q Consensus 375 ~~vl~g~~-~vdes~LtGEs~pv~k~~g~-------------~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~ 440 (658)
|++++|+. .||||+|||||.|+.|.+|+ .+|+||.+.+|.+.++|++||.+|.+|++.+++.+ ..
T Consensus 167 g~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~-~~ 245 (867)
T TIGR01524 167 ARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATE-RR 245 (867)
T ss_pred EEEEecCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhC-CC
Confidence 99999975 99999999999999998864 69999999999999999999999999999999988 66
Q ss_pred cCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHH
Q 042234 441 AKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVM 520 (658)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~ 520 (658)
.++|+++.++++.+++.++.++++++.+++|++... ++..++.+++++++++|||+||+++++++.
T Consensus 246 ~~t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~--------------~~~~~~~~al~l~v~~iP~~Lp~~vt~~la 311 (867)
T TIGR01524 246 GQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGLMKG--------------DWLEAFLFALAVAVGLTPEMLPMIVSSNLA 311 (867)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHheehHHHhcC--------------CHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 789999999999999999888888777666544221 456788889999999999999999999999
Q ss_pred HHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccCCCHHHHHHHHHH---hhccCCCHHHHHHH
Q 042234 521 VGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAA---TEVNSEHPLAKAIV 597 (658)
Q Consensus 521 ~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~s~hp~~~ai~ 597 (658)
.+..+++++|+++|+++++|.||++|++|||||||||+|+|++.++...++.+.++++.+++. .+..+.||+++|++
T Consensus 312 ~g~~~mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~~~~~~~~~~~l~~a~l~~~~~~~~~~p~~~Al~ 391 (867)
T TIGR01524 312 KGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHIDSSGETSERVLKMAWLNSYFQTGWKNVLDHAVL 391 (867)
T ss_pred HHHHHHHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEecCCCCCHHHHHHHHHHhCCCCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999876666667777777653 23346799999999
Q ss_pred HHHHhccCCCCCCCCCCcccceeec----CCeEEEEEcC-----eEEEEcchhhhhh
Q 042234 598 EYAKKFREDEDNPLWPEAHDFISIT----GHGVKATVHN-----KEIMVGNKSLMLD 645 (658)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~----g~Gi~~~~~~-----~~~~iGs~~~~~~ 645 (658)
+++....... .......+.++| ++++++.+++ ..+..|+++.+.+
T Consensus 392 ~~~~~~~~~~---~~~~~~~~~~~pF~s~~k~ms~~v~~~~~~~~~~~KGa~e~il~ 445 (867)
T TIGR01524 392 AKLDESAARQ---TASRWKKVDEIPFDFDRRRLSVVVENRAEVTRLICKGAVEEMLT 445 (867)
T ss_pred HHHHhhchhh---HhhcCceEEEeccCCCcCEEEEEEEcCCceEEEEEeCcHHHHHH
Confidence 9987531100 001112233344 6888887754 2478898887643
No 14
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=2.9e-48 Score=449.44 Aligned_cols=328 Identities=18% Similarity=0.227 Sum_probs=268.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecC---CCCceeeEEeeCCCCCCCCEEEEeCCCe
Q 042234 294 DFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDE---DGNVISEEEIDSRLIQRNDVIKIIPGAK 370 (658)
Q Consensus 294 ~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~---~g~~~~~~~i~~~~l~~GDii~v~~ge~ 370 (658)
+|.+ +++++++++++.+++.++++|+++.+++|+++.+.+++|+|.++ +|+ +++|++++|+|||+|.|++||+
T Consensus 110 ~~~~-~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~---~~~I~~~eLv~GDiV~l~~Gd~ 185 (903)
T PRK15122 110 DLTG-VIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPV---RREIPMRELVPGDIVHLSAGDM 185 (903)
T ss_pred cHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCe---EEEEEHHHCCCCCEEEECCCCE
Confidence 4554 46677888889999999999999999999999999999998211 145 7899999999999999999999
Q ss_pred eeecEEEEecce-eeecccccCCCcceeecC-----------------------CCeeeeeceecCceEEEEEEEecCCc
Q 042234 371 VASDGYVLWGQS-HVNESMITGEARPVAKRK-----------------------GYTVIGGTVNENGVLHIKATRVGSES 426 (658)
Q Consensus 371 iPaD~~vl~g~~-~vdes~LtGEs~pv~k~~-----------------------g~~v~~Gt~~~~g~~~~~v~~~g~~T 426 (658)
|||||++++|.. .||||+|||||.|+.|.+ +|.+|+||.+.+|.+.++|++||.+|
T Consensus 186 IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T 265 (903)
T PRK15122 186 IPADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRT 265 (903)
T ss_pred EeeeEEEEEcCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEecccc
Confidence 999999999986 899999999999999975 37899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeee
Q 042234 427 ALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIA 506 (658)
Q Consensus 427 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~ 506 (658)
.+|++.+++.+ ...++++++..+++.+++..+.+.++.+.+++.++.. .++..++.+++++++++
T Consensus 266 ~~gkI~~~v~~-~~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~~~~--------------~~~~~~l~~aisl~V~~ 330 (903)
T PRK15122 266 YFGSLAKSIVG-TRAQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFTK--------------GDWLEALLFALAVAVGL 330 (903)
T ss_pred HhhHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--------------CCHHHHHHHHHHHHHHH
Confidence 99999998877 5567899999999988777666655544443322211 14677888899999999
Q ss_pred ccccccchHHHHHHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccCCCHHHHHHHHHHh--
Q 042234 507 CPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAAT-- 584 (658)
Q Consensus 507 ~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~-- 584 (658)
|||+||+++++++..+..+++++|+++|+.+++|.||++|++|||||||||+|+|.+.+++..++...++++.+++..
T Consensus 331 ~Pe~Lp~~vt~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~~~~~~~~~~l~~a~l~s~ 410 (903)
T PRK15122 331 TPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLDVSGRKDERVLQLAWLNSF 410 (903)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEcCCCCChHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999998876666667777776532
Q ss_pred -hccCCCHHHHHHHHHHHhccCCCCCCCCCCcccceeecCCeEEEE----E---cCeEEEE--cchhhh
Q 042234 585 -EVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGHGVKAT----V---HNKEIMV--GNKSLM 643 (658)
Q Consensus 585 -~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gi~~~----~---~~~~~~i--Gs~~~~ 643 (658)
+..+.||+++|+++++...+... .......+.++|+.|.... + +|+.+.+ |+++.+
T Consensus 411 ~~~~~~~p~e~All~~a~~~~~~~---~~~~~~~~~~~pF~s~~k~ms~v~~~~~~~~~~~~KGa~e~i 476 (903)
T PRK15122 411 HQSGMKNLMDQAVVAFAEGNPEIV---KPAGYRKVDELPFDFVRRRLSVVVEDAQGQHLLICKGAVEEM 476 (903)
T ss_pred CCCCCCChHHHHHHHHHHHcCchh---hhhcCceEEEeeeCCCcCEEEEEEEcCCCcEEEEECCcHHHH
Confidence 34467999999999998654211 1112344566676655432 2 4555555 998754
No 15
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=100.00 E-value=2.4e-48 Score=428.94 Aligned_cols=305 Identities=31% Similarity=0.422 Sum_probs=271.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEEEec
Q 042234 303 ISFILLGKYLEVLAKGKTSEAIAKLMD--LAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWG 380 (658)
Q Consensus 303 l~~~~~~~~l~~~~~~k~~~~~~~l~~--~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~g 380 (658)
+++.+++.+++.++++++.+.++++.+ ..|.+++|+| +| +++|++++|+|||+|.+++||+|||||++++|
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r---~g----~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g 75 (499)
T TIGR01494 3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLR---NG----WKEIPASDLVPGDIVLVKSGEIVPADGVLLSG 75 (499)
T ss_pred EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEE---CC----eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEc
Confidence 456788899999999999999999998 8899999998 66 47899999999999999999999999999999
Q ss_pred ceeeecccccCCCcceeecCCCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHh-hhhhHH
Q 042234 381 QSHVNESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRIS-KYFVPL 459 (658)
Q Consensus 381 ~~~vdes~LtGEs~pv~k~~g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 459 (658)
.+.||||+|||||.|+.|.+|+.+++||.+.+|.+.++|+++|.+|..+++...+.++...++++++..+++. .+++++
T Consensus 76 ~~~vdes~LTGEs~pv~k~~g~~v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~ 155 (499)
T TIGR01494 76 SCFVDESNLTGESVPVLKTAGDAVFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILF 155 (499)
T ss_pred cEEEEcccccCCCCCeeeccCCccccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888899999999999 799999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHHhcCeEEecchHh
Q 042234 460 VIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQAL 539 (658)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~ 539 (658)
+++++++.++.|.+.... . .++..++.+++++++++|||+|++++|+++..+..+++++|+++|+++.+
T Consensus 156 ~~~la~~~~~~~~~~~~~---~--------~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~~gilvk~~~~l 224 (499)
T TIGR01494 156 VLLIALAVFLFWAIGLWD---P--------NSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAKKGIVVRSLNAL 224 (499)
T ss_pred HHHHHHHHHHHHHHHHcc---c--------ccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHCCcEEechhhh
Confidence 988888888777653210 0 03667889999999999999999999999999999999999999999999
Q ss_pred hhhcCCcEEEecCCCcccCCceeEEEEEeccCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhccCCCCCCCCCCcccce
Q 042234 540 ESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHDFI 619 (658)
Q Consensus 540 e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~ 619 (658)
|+||++|++|||||||||+|+|++.++.+.+. |+.+.||+++|++++++... ....++.
T Consensus 225 E~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~-------------~~~s~hp~~~ai~~~~~~~~--------~~~~~f~ 283 (499)
T TIGR01494 225 EELGKVDYICSDKTGTLTKNEMSFKKVSVLGG-------------EYLSGHPDERALVKSAKWKI--------LNVFEFS 283 (499)
T ss_pred hhccCCcEEEeeCCCccccCceEEEEEEecCC-------------CcCCCChHHHHHHHHhhhcC--------cceeccC
Confidence 99999999999999999999999999876543 56789999999999987421 1234567
Q ss_pred eecCCeEEEEEcC--eEEEEcchhhhhhcC
Q 042234 620 SITGHGVKATVHN--KEIMVGNKSLMLDNN 647 (658)
Q Consensus 620 ~~~g~Gi~~~~~~--~~~~iGs~~~~~~~~ 647 (658)
+.+ +|+++.+++ +++.+|+++++.+..
T Consensus 284 ~~~-~~~~~~~~~~~~~~~~G~~~~i~~~~ 312 (499)
T TIGR01494 284 SVR-KRMSVIVRGPDGTYVKGAPEFVLSRV 312 (499)
T ss_pred CCC-ceEEEEEecCCcEEEeCCHHHHHHhh
Confidence 777 799998875 689999999987653
No 16
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=4.5e-47 Score=441.86 Aligned_cols=255 Identities=20% Similarity=0.267 Sum_probs=225.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeec
Q 042234 295 FFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASD 374 (658)
Q Consensus 295 y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD 374 (658)
|.++ +.+++++++...+..++++|+++.+++|.++.|.+++|+| ||+ +++|+++||+|||+|.+++||+||||
T Consensus 80 ~~~~-~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~ViR---dg~---~~~I~~~eLv~GDiv~l~~Gd~IPaD 152 (884)
T TIGR01522 80 IDDA-VSITLAILIVVTVGFVQEYRSEKSLEALNKLVPPECHLIR---EGK---LEHVLASTLVPGDLVCLSVGDRVPAD 152 (884)
T ss_pred hhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEE---CCE---EEEEEHHHCccCCEEEecCCCEEeee
Confidence 4443 3344445555677778888999999999999999999999 897 89999999999999999999999999
Q ss_pred EEEEecc-eeeecccccCCCcceeecCC--------------CeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHh
Q 042234 375 GYVLWGQ-SHVNESMITGEARPVAKRKG--------------YTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQ 439 (658)
Q Consensus 375 ~~vl~g~-~~vdes~LtGEs~pv~k~~g--------------~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~ 439 (658)
|++++|+ ..||||+|||||.|+.|.++ |.+|+||.+.+|.+.++|++||.+|.+|++.++++++.
T Consensus 153 g~ii~g~~l~VDES~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~ 232 (884)
T TIGR01522 153 LRIVEAVDLSIDESNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIE 232 (884)
T ss_pred EEEEEcCceEEEcccccCCCcceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHHHhccCC
Confidence 9999996 69999999999999999886 48999999999999999999999999999999999888
Q ss_pred hcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHH
Q 042234 440 MAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAV 519 (658)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~ 519 (658)
..++|+++.++++++++.++.++++++.++++++.+. ++..++.+++++++++|||+||+++|+++
T Consensus 233 ~~kt~lq~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~v~llv~aiP~~Lp~~vt~~l 298 (884)
T TIGR01522 233 KPKTPLQKSMDLLGKQLSLVSFGVIGVICLVGWFQGK--------------DWLEMFTISVSLAVAAIPEGLPIIVTVTL 298 (884)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 8899999999999999988776555544444333221 46678888999999999999999999999
Q ss_pred HHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEecc
Q 042234 520 MVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLK 570 (658)
Q Consensus 520 ~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~ 570 (658)
..+.++++++|+++|+.+++|.||++|++|||||||||+|+|++.+++..+
T Consensus 299 ~~~~~r~ak~~ilvk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~~ 349 (884)
T TIGR01522 299 ALGVLRMSKKRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSD 349 (884)
T ss_pred HHHHHHHhhcCCcccchHHHHhccCccEEEecCccccccCeEEEEEEEecC
Confidence 999999999999999999999999999999999999999999999987643
No 17
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=1.2e-44 Score=424.01 Aligned_cols=342 Identities=19% Similarity=0.199 Sum_probs=258.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeee
Q 042234 294 DFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDL-APETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVA 372 (658)
Q Consensus 294 ~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~-~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iP 372 (658)
.|++. +++++++++...+..++++++++.++++.+. .+.+++|+| ||+ +++|++++|+|||+|.|++||+||
T Consensus 127 ~~~~~-~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViR---dG~---~~~I~~~~Lv~GDiV~l~~Gd~IP 199 (941)
T TIGR01517 127 GWIEG-VAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIR---GGQ---EQQISIHDIVVGDIVSLSTGDVVP 199 (941)
T ss_pred chHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEE---CCE---EEEEeHHHCCCCCEEEECCCCEec
Confidence 45554 4444555556677778888888888888763 477999999 897 899999999999999999999999
Q ss_pred ecEEEEec-ceeeecccccCCCcceeecCCCe--eeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHH
Q 042234 373 SDGYVLWG-QSHVNESMITGEARPVAKRKGYT--VIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFA 449 (658)
Q Consensus 373 aD~~vl~g-~~~vdes~LtGEs~pv~k~~g~~--v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~ 449 (658)
|||++++| .+.||||+|||||.|+.|.+++. +|+||.+.+|.+.++|++||.+|.+|++.+++.+++ +++|+++.+
T Consensus 200 aD~~li~g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~~~~~~~-~~t~l~~~~ 278 (941)
T TIGR01517 200 ADGVFISGLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRAEG-EDTPLQEKL 278 (941)
T ss_pred ccEEEEEcCcEEEEecccCCCCCcccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHHHHhhccCC-CCCcHHHHH
Confidence 99999999 78999999999999999988765 999999999999999999999999999999887765 567999999
Q ss_pred HhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCC--CcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHH
Q 042234 450 DRISKYFVPLVIILSFSTWLAWFLAGKFHSYPE--SWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGA 527 (658)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~ 527 (658)
+++.+++.+++++++++.+++|++...+..... ........++...+.+++++++++|||+|++++|+++..++.+++
T Consensus 279 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~ma 358 (941)
T TIGR01517 279 SELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMM 358 (941)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHH
Confidence 999999999888888777766643211100000 000001125677888999999999999999999999999999999
Q ss_pred hcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccCC-C-----------HHHHHHHHHHhhc---------
Q 042234 528 SQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNM-V-----------LRDFYEVVAATEV--------- 586 (658)
Q Consensus 528 ~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~-~-----------~~~~~~~~~~~~~--------- 586 (658)
++|+++|+++++|.||++|++|||||||||+|+|++.+++..++. + ..+++..+..+..
T Consensus 359 k~~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~ 438 (941)
T TIGR01517 359 KDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQRFNVRDVLRNVPKHVRNILVEGISLNSSSEEVVDRG 438 (941)
T ss_pred hCCCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEEecceEecCcccccCCHHHHHHHHHHHHhCCCCccccCCC
Confidence 999999999999999999999999999999999999998764321 0 1122222222211
Q ss_pred ----cCCCHHHHHHHHHHHhccCCCC----CCCCCCccccee-ecCCeEEEEEcCe---EEEEcchhhh
Q 042234 587 ----NSEHPLAKAIVEYAKKFREDED----NPLWPEAHDFIS-ITGHGVKATVHNK---EIMVGNKSLM 643 (658)
Q Consensus 587 ----~s~hp~~~ai~~~~~~~~~~~~----~~~~~~~~~~~~-~~g~Gi~~~~~~~---~~~iGs~~~~ 643 (658)
...||++.|++++++..+.+.. ........+|.+ ..++|+....+++ .+.-|+++.+
T Consensus 439 ~~~~~~g~p~e~All~~~~~~~~~~~~~~~~~~~~~~~pF~s~~k~msvv~~~~~~~~~~~~KGA~e~i 507 (941)
T TIGR01517 439 GKRAFIGSKTECALLGFLLLLGRDYQEVRAEEKVVKIYPFNSERKFMSVVVKHSGGKVREFRKGASEIV 507 (941)
T ss_pred CccccCCCccHHHHHHHHHHcCCCHHHHHhhchhccccccCCCCCeEEEEEEeCCCcEEEEEECChHHH
Confidence 1246888999999876542210 001111223433 2355666555544 3455776554
No 18
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=4.7e-44 Score=417.49 Aligned_cols=266 Identities=23% Similarity=0.313 Sum_probs=231.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeee
Q 042234 293 TDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVA 372 (658)
Q Consensus 293 ~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iP 372 (658)
..|++. +++++++++...+..++++|+++.+++|.++.+.+++|+| ||+ +++|+++||+|||+|.+++||+||
T Consensus 34 ~~~~~~-~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViR---dg~---~~~I~~~~Lv~GDiv~l~~Gd~IP 106 (917)
T TIGR01116 34 TAFVEP-FVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVLR---DGR---WSVIKAKDLVPGDIVELAVGDKVP 106 (917)
T ss_pred ccHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEE---CCE---EEEEEHHHCCCCCEEEECCCCEee
Confidence 356665 5566777888899999999999999999999999999999 897 899999999999999999999999
Q ss_pred ecEEEEecc-eeeecccccCCCcceeecCC-------------CeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHH
Q 042234 373 SDGYVLWGQ-SHVNESMITGEARPVAKRKG-------------YTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESA 438 (658)
Q Consensus 373 aD~~vl~g~-~~vdes~LtGEs~pv~k~~g-------------~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~ 438 (658)
|||++++|+ +.||||+|||||.|+.|.++ |.+|+||.+.+|++.++|++||.+|.+|++.+++...
T Consensus 107 aD~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gki~~~~~~~ 186 (917)
T TIGR01116 107 ADIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMRAA 186 (917)
T ss_pred ccEEEEEecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHHHHHHhhcc
Confidence 999999996 79999999999999999875 8899999999999999999999999999999999888
Q ss_pred hhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHH
Q 042234 439 QMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTA 518 (658)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~ 518 (658)
+.+++|+++.+++++.++.++.++++++.++++............|+ ..+...+..++++++++|||+|+++++++
T Consensus 187 ~~~~t~lq~~l~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~l~v~~iP~~Lp~~vti~ 262 (917)
T TIGR01116 187 EQEDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWI----QGAIYYFKIAVALAVAAIPEGLPAVITTC 262 (917)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH----HHHHHHHHHHHhhhhhccccccHHHHHHH
Confidence 88899999999999999888877777666554432111000011121 13445566778899999999999999999
Q ss_pred HHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEec
Q 042234 519 VMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLL 569 (658)
Q Consensus 519 ~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~ 569 (658)
++.+.++++++|+++|+++++|+||++|+||||||||||+|+|++.+++..
T Consensus 263 l~~~~~~m~~~~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~ 313 (917)
T TIGR01116 263 LALGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVAL 313 (917)
T ss_pred HHHHHHHHHHCCcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEec
Confidence 999999999999999999999999999999999999999999999998764
No 19
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=5e-44 Score=419.90 Aligned_cols=254 Identities=19% Similarity=0.305 Sum_probs=231.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeec
Q 042234 295 FFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASD 374 (658)
Q Consensus 295 y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD 374 (658)
+|..+++++++++++..++.++++|+.+.++++.++.+.+++|+| ||+ +++|++++|+|||+|.|++||+||||
T Consensus 103 ~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViR---dg~---~~~I~~~~lv~GDiv~l~~Gd~IPaD 176 (997)
T TIGR01106 103 NLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIR---DGE---KMSINAEQVVVGDLVEVKGGDRIPAD 176 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEE---CCE---EEEeeHHHCCCCCEEEECCCCEEeee
Confidence 344455677788889999999999999999999999999999999 897 89999999999999999999999999
Q ss_pred EEEEecc-eeeecccccCCCcceeecCCC----------eeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCC
Q 042234 375 GYVLWGQ-SHVNESMITGEARPVAKRKGY----------TVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKA 443 (658)
Q Consensus 375 ~~vl~g~-~~vdes~LtGEs~pv~k~~g~----------~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~ 443 (658)
|++++|+ +.||||+|||||.|+.|.+++ .+|+||.+.+|.+.++|++||.+|.+|++.+++++.+.+++
T Consensus 177 ~~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~ 256 (997)
T TIGR01106 177 LRIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLASGLENGKT 256 (997)
T ss_pred EEEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhhhhcccCCC
Confidence 9999997 599999999999999998764 79999999999999999999999999999999988888899
Q ss_pred hhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHH
Q 042234 444 PVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGT 523 (658)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~ 523 (658)
|+++..+++.+++.+++++++++.+++|++.+. ++..++.+++++++++|||+|++++++++..+.
T Consensus 257 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~ 322 (997)
T TIGR01106 257 PIAIEIEHFIHIITGVAVFLGVSFFILSLILGY--------------TWLEAVIFLIGIIVANVPEGLLATVTVCLTLTA 322 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CHHHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 999999999999999888888777766654332 355677888999999999999999999999999
Q ss_pred HHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEe
Q 042234 524 GVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKL 568 (658)
Q Consensus 524 ~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~ 568 (658)
.+++++|+++|+++++|+||+++++|||||||||+|+|+|.+++.
T Consensus 323 ~~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~ 367 (997)
T TIGR01106 323 KRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWF 367 (997)
T ss_pred HHHHHCCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEE
Confidence 999999999999999999999999999999999999999999874
No 20
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=410.36 Aligned_cols=325 Identities=22% Similarity=0.326 Sum_probs=265.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEEEec
Q 042234 301 MLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWG 380 (658)
Q Consensus 301 ~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~g 380 (658)
++++++++...+..++++|+.+.+++|+++.+.+++|+| ||+ +++|++++|+|||+|.+++||+||||++++++
T Consensus 108 ~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~R---~g~---~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~ 181 (917)
T COG0474 108 VILLVVVINALLGFVQEYRAEKALEALKKMSSPKAKVLR---DGK---FVEIPASELVPGDIVLLEAGDVVPADLRLLES 181 (917)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEe---CCc---EEEecHHHCCCCcEEEECCCCccccceEEEEe
Confidence 344555666666777889999999999999999999999 898 89999999999999999999999999999999
Q ss_pred ce-eeecccccCCCcceeec--------------CCCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChh
Q 042234 381 QS-HVNESMITGEARPVAKR--------------KGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPV 445 (658)
Q Consensus 381 ~~-~vdes~LtGEs~pv~k~--------------~g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~ 445 (658)
++ +||||+|||||.|+.|. ..|.+|+||.+.+|.+.+.|++||.+|.+|++.+.+.......+|+
T Consensus 182 ~~l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~l 261 (917)
T COG0474 182 SDLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTPL 261 (917)
T ss_pred cCceEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccccCCcH
Confidence 98 99999999999999995 3588999999999999999999999999999999988876788999
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHH
Q 042234 446 QKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGV 525 (658)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~ 525 (658)
++.++++.+++..+.++++++.++..++.+. ..+..++.+++++++.++|.+||+.+.++++.+..+
T Consensus 262 ~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~ 328 (917)
T COG0474 262 QRKLNKLGKFLLVLALVLGALVFVVGLFRGG-------------NGLLESFLTALALAVAAVPEGLPAVVTIALALGAQR 328 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 9999999999999999988888877655432 126788999999999999999999999999999999
Q ss_pred HHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEecc-CCCHH-----------HHHH---HHHHhhcc---
Q 042234 526 GASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLK-NMVLR-----------DFYE---VVAATEVN--- 587 (658)
Q Consensus 526 ~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~-~~~~~-----------~~~~---~~~~~~~~--- 587 (658)
++++++++|+++++|+||++|+||||||||||+|+|+|.+++..+ ..+.+ +++. +|......
T Consensus 329 mak~~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lc~~~~~~~~~ 408 (917)
T COG0474 329 MAKDNAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKDIDDKDLKDSPALLRFLLAAALCNSVTPEKNG 408 (917)
T ss_pred HHhccchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeCCCcccccccccccchHHHHHHHHHHhcCcccccccC
Confidence 999999999999999999999999999999999999999999984 21111 1222 22222222
Q ss_pred ---CCCHHHHHHHHHHHhccC--CCCCC--CCCCcccceeecCCe-EEEEEc--C---eEEEEcchhhhh
Q 042234 588 ---SEHPLAKAIVEYAKKFRE--DEDNP--LWPEAHDFISITGHG-VKATVH--N---KEIMVGNKSLML 644 (658)
Q Consensus 588 ---s~hp~~~ai~~~~~~~~~--~~~~~--~~~~~~~~~~~~g~G-i~~~~~--~---~~~~iGs~~~~~ 644 (658)
..||.+.||++.+.+.+. +.... ..+.+.++...+-+- ++..++ + ..+.-|+++-+.
T Consensus 409 ~~~~gdptE~Al~~~a~~~~~~~~~~~~~~~~~~~~~~PFdS~rKrMsviv~~~~~~~~~~~KGApe~il 478 (917)
T COG0474 409 WYQAGDPTEGALVEFAEKLGFSLDLSGLEVEYPILAEIPFDSERKRMSVIVKTDEGKYILFVKGAPEVIL 478 (917)
T ss_pred ceecCCccHHHHHHHHHhcCCcCCHHHHhhhcceeEEecCCCCceEEEEEEEcCCCcEEEEEcCChHHHH
Confidence 569999999999987653 21110 111133333334433 334443 2 247789988764
No 21
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=3.5e-42 Score=406.92 Aligned_cols=287 Identities=20% Similarity=0.202 Sum_probs=233.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEe--CCCee
Q 042234 294 DFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKII--PGAKV 371 (658)
Q Consensus 294 ~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~--~ge~i 371 (658)
.||..++++++++++...+..++++|+.+.++++.. .+..++|+| ||+ +++|++++|+|||+|.|+ +|++|
T Consensus 191 ~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~R---dg~---~~~I~s~eLvpGDiv~l~~~~g~~i 263 (1054)
T TIGR01657 191 EYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVIR---NGK---WVTIASDELVPGDIVSIPRPEEKTM 263 (1054)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEEE---CCE---EEEEEcccCCCCCEEEEecCCCCEe
Confidence 466667888888899999999999999999888765 467999999 897 899999999999999999 99999
Q ss_pred eecEEEEecceeeecccccCCCcceeecC------------------CCeeeeeceecC-------ceEEEEEEEecCCc
Q 042234 372 ASDGYVLWGQSHVNESMITGEARPVAKRK------------------GYTVIGGTVNEN-------GVLHIKATRVGSES 426 (658)
Q Consensus 372 PaD~~vl~g~~~vdes~LtGEs~pv~k~~------------------g~~v~~Gt~~~~-------g~~~~~v~~~g~~T 426 (658)
||||++++|++.||||+|||||.|+.|.+ ++.+|+||.+.+ |.+.++|++||.+|
T Consensus 264 PaD~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T 343 (1054)
T TIGR01657 264 PCDSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFST 343 (1054)
T ss_pred cceEEEEeCcEEEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccc
Confidence 99999999999999999999999999975 235999999984 78999999999999
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeee
Q 042234 427 ALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIA 506 (658)
Q Consensus 427 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~ 506 (658)
..|++.+.+..+...++++++...++..++..+.++. ++++++.+.... .++...+.+++++++++
T Consensus 344 ~~G~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~a~i~----~i~~~~~~~~~~----------~~~~~~~l~~l~iiv~~ 409 (1054)
T TIGR01657 344 SKGQLVRSILYPKPRVFKFYKDSFKFILFLAVLALIG----FIYTIIELIKDG----------RPLGKIILRSLDIITIV 409 (1054)
T ss_pred cchHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcC----------CcHHHHHHHHHHHHHhh
Confidence 9999999888777777888887777665444333322 222221111100 14677888899999999
Q ss_pred ccccccchHHHHHHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccCCC-------------
Q 042234 507 CPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMV------------- 573 (658)
Q Consensus 507 ~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~------------- 573 (658)
+|++||+++++++..+..+++++|++||++.++|.+|++|++|||||||||+|+|.|.+++..++..
T Consensus 410 vP~~LP~~~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~~~~~~~~~~~~~~~~~ 489 (1054)
T TIGR01657 410 VPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLSGNQEFLKIVTEDSSLK 489 (1054)
T ss_pred cCchHHHHHHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEecccCccccccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999988754210
Q ss_pred HHHHHHHHHHhh-------ccCCCHHHHHHHHHHH
Q 042234 574 LRDFYEVVAATE-------VNSEHPLAKAIVEYAK 601 (658)
Q Consensus 574 ~~~~~~~~~~~~-------~~s~hp~~~ai~~~~~ 601 (658)
...+...++.+. ....||++.|+++++.
T Consensus 490 ~~~~~~~~a~C~~~~~~~~~~~Gdp~E~al~~~~~ 524 (1054)
T TIGR01657 490 PSITHKALATCHSLTKLEGKLVGDPLDKKMFEATG 524 (1054)
T ss_pred chHHHHHHHhCCeeEEECCEEecCHHHHHHHHhCC
Confidence 111222222221 2346999999999763
No 22
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=4.4e-42 Score=402.32 Aligned_cols=249 Identities=19% Similarity=0.254 Sum_probs=220.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEE
Q 042234 298 TSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYV 377 (658)
Q Consensus 298 ~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~v 377 (658)
.++++++++++...+..++++|+++.+++|+++.+.+++|+| ||+ +++|++++|+|||+|.+++||+|||||++
T Consensus 83 ~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~ViR---dg~---~~~I~a~eLVpGDIv~L~~Gd~VPAD~rL 156 (1053)
T TIGR01523 83 EGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIR---NGK---SDAIDSHDLVPGDICLLKTGDTIPADLRL 156 (1053)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEe---CCe---eeecCHhhCCCCCEEEECCCCEeeccEEE
Confidence 456777888899999999999999999999999999999999 998 89999999999999999999999999999
Q ss_pred Eecc-eeeecccccCCCcceeecC---------------CCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhh-
Q 042234 378 LWGQ-SHVNESMITGEARPVAKRK---------------GYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQM- 440 (658)
Q Consensus 378 l~g~-~~vdes~LtGEs~pv~k~~---------------g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~- 440 (658)
+++. ..||||+|||||.|+.|.+ .|++|+||.+.+|.+.++|++||.+|.+|++.+++.+...
T Consensus 157 i~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa~~~~~~~~~ 236 (1053)
T TIGR01523 157 IETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDGGL 236 (1053)
T ss_pred EEeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHHHHHhhhhhc
Confidence 9985 5999999999999999964 2678999999999999999999999999999998865431
Q ss_pred ----------------------------------cCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCC
Q 042234 441 ----------------------------------AKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIP 486 (658)
Q Consensus 441 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (658)
.++|+|+.++++.+++..+.++++++.++...+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~~~~~------------ 304 (1053)
T TIGR01523 237 FQRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAHKFD------------ 304 (1053)
T ss_pred cccccccccccchhhhcccccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------
Confidence 1489999999999988777777766655432210
Q ss_pred CchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEE
Q 042234 487 SSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVST 566 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~ 566 (658)
.+...+.++++++++++|.+||+.+.++++.+.++|+++|+++|+..++|.||++++||+|||||||+|+|.|.++
T Consensus 305 ----~~~~~~~~av~l~Va~VPegLp~~vti~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i 380 (1053)
T TIGR01523 305 ----VDKEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQI 380 (1053)
T ss_pred ----hhHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcCccccceEEEEEE
Confidence 1234556778999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Ee
Q 042234 567 KL 568 (658)
Q Consensus 567 ~~ 568 (658)
+.
T Consensus 381 ~~ 382 (1053)
T TIGR01523 381 WI 382 (1053)
T ss_pred EE
Confidence 64
No 23
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=371.62 Aligned_cols=261 Identities=24% Similarity=0.367 Sum_probs=226.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecE
Q 042234 296 FETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDG 375 (658)
Q Consensus 296 ~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~ 375 (658)
|+.+..+.+++.+.-....+|++|+.+.++.|+++.|..+.|+| +|+ .+.+++++|||||||.++-||+||||.
T Consensus 78 ~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~R---~gk---~~~i~A~eLVPGDiV~l~vGDkVPADl 151 (972)
T KOG0202|consen 78 FDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVLR---SGK---LQHILARELVPGDIVELKVGDKIPADL 151 (972)
T ss_pred cccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEEe---cCc---ccceehhccCCCCEEEEecCCccccce
Confidence 33445566666777778888999999999999999999999999 887 899999999999999999999999999
Q ss_pred EEEecce-eeecccccCCCcceeecC--------------CCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhh
Q 042234 376 YVLWGQS-HVNESMITGEARPVAKRK--------------GYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQM 440 (658)
Q Consensus 376 ~vl~g~~-~vdes~LtGEs~pv~k~~--------------g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~ 440 (658)
++++-.. .||||.|||||.|+.|+. .|++|+||.+..|.++++|+.||.+|.+|++.+.+.+.+.
T Consensus 152 Rl~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~m~~~e~ 231 (972)
T KOG0202|consen 152 RLIEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKMMQATES 231 (972)
T ss_pred eEEeeeeeeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHHHhccCC
Confidence 9999766 999999999999999942 4789999999999999999999999999999999999999
Q ss_pred cCChhHHHHHhHhhhhhHHHHHHHHHHHHH---HHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHH
Q 042234 441 AKAPVQKFADRISKYFVPLVIILSFSTWLA---WFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPT 517 (658)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~ 517 (658)
.|+|+|+.+|.+.+.+..++.++++.++++ |+. ...+...|+. .+.+.|..++++-++++|.+||..+.+
T Consensus 232 ~kTPLqk~ld~~G~qLs~~is~i~v~v~~~nig~f~---~p~~~g~~fk----~~~~~f~IaVsLAVAAIPEGLPaVvT~ 304 (972)
T KOG0202|consen 232 PKTPLQKKLDEFGKQLSKVISFICVGVWLLNIGHFL---DPVHGGSWFK----GALYYFKIAVSLAVAAIPEGLPAVVTT 304 (972)
T ss_pred CCCcHHHHHHHHHHHHHHHheehhhhHHHhhhhhhc---cccccccchh----chhhhhhHHHHHHHHhccCCCcchhhh
Confidence 999999999999998886555555544332 222 1111223432 456677888999999999999999999
Q ss_pred HHHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEec
Q 042234 518 AVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLL 569 (658)
Q Consensus 518 ~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~ 569 (658)
+++.+.++|+|+++++|...+.|.||.+++||+|||||||+|+|.+.+++..
T Consensus 305 tLALG~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~ 356 (972)
T KOG0202|consen 305 TLALGTRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIP 356 (972)
T ss_pred hHHHhHHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEec
Confidence 9999999999999999999999999999999999999999999999998874
No 24
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-39 Score=346.69 Aligned_cols=307 Identities=20% Similarity=0.289 Sum_probs=243.8
Q ss_pred CccchhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCC
Q 042234 292 GTDFFETSSMLISFI--LLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGA 369 (658)
Q Consensus 292 ~~~y~~~~~~ll~~~--~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge 369 (658)
.++|++.+++++.++ .+-..+.+|++.+.-+.+++. ....+..|+| ||+ .++|++.||++|||+.++.||
T Consensus 179 ~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L~~~--k~~~k~~ViR---~G~---r~~isI~diVVGDIv~lk~GD 250 (1034)
T KOG0204|consen 179 EDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKLQKE--KRNIKFQVIR---GGR---RQQISIYDLVVGDIVQLKIGD 250 (1034)
T ss_pred CcccccchhheeeEEEEEEEeecchhHHhhhhhhhhhh--hhceEEEEEE---CCE---EEEEEEeeeeeccEEEeecCC
Confidence 458999888775533 233344555555444444422 3356889999 997 899999999999999999999
Q ss_pred eeeecEEEEecce-eeecccccCCCcceeecC--CCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhH
Q 042234 370 KVASDGYVLWGQS-HVNESMITGEARPVAKRK--GYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQ 446 (658)
Q Consensus 370 ~iPaD~~vl~g~~-~vdes~LtGEs~pv~k~~--g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~ 446 (658)
.+||||++++|+. .+|||++||||.++.|.+ +.++++||++.+|.+++.|+.+|.+|..|++...+......++|+|
T Consensus 251 qvPADGvli~gn~L~iDESSlTGESd~v~k~~~~dPfLlSGTkv~eGsgkMlVTaVGmnt~wG~~m~~l~~~~~e~tpLQ 330 (1034)
T KOG0204|consen 251 QVPADGVLIQGNSLKIDESSLTGESDHVQKSLDKDPFLLSGTKVMEGSGKMLVTAVGMNTQWGIIMTLLGAGGEEETPLQ 330 (1034)
T ss_pred ccccceEEEeccceeEecccccCCCcceeccCCCCCeEeecceeecCcceEEEEEeeecchHhhHHHhhhcCCCcCCcHH
Confidence 9999999999965 999999999999999976 6789999999999999999999999999999999988887899999
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHH---HHHhhccCCC--C-CCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHH
Q 042234 447 KFADRISKYFVPLVIILSFSTWLA---WFLAGKFHSY--P-ESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVM 520 (658)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~ 520 (658)
-..++++..+-.+.+.++++++++ .++.+.+... + ..|.+.+...+...|..+++++++++|.+||+|+.++++
T Consensus 331 ~kL~~lA~~Igk~Gl~~A~~~~~VL~~r~~~~~~~~~~~~~~~~~~~~~~~~v~~f~i~VTilVVAVPEGLPLAVTLsLA 410 (1034)
T KOG0204|consen 331 VKLNGLATQIGKIGLLFAALTFIVLVIRFFIGKTKIEGGTGTTWSDEYIQEFVKFFIIAVTILVVAVPEGLPLAVTLSLA 410 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCccccHHHHHHHHHHhhheeEEEEEECCCCccHHHHHHHH
Confidence 999999988877777776665544 3333222111 1 234444455677788888999999999999999999999
Q ss_pred HHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccCCCH----------HHHHHH-HHHhhcc--
Q 042234 521 VGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVL----------RDFYEV-VAATEVN-- 587 (658)
Q Consensus 521 ~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~----------~~~~~~-~~~~~~~-- 587 (658)
+++++|.+.+.++|..++.|.+|..++||+|||||||+|+|.+.+.++..+... +.+..+ ..++..+
T Consensus 411 ys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKTGTLT~N~MtVV~~~~~~~~~k~~~~~~~~l~~~~~~ll~~gI~~Nt~ 490 (1034)
T KOG0204|consen 411 YSMKKMMKDNNLVRHLDACETMGSATAICSDKTGTLTTNRMTVVQSYIGSEHYKVNSPKSSNLPPSLLDLLLQGIAQNTT 490 (1034)
T ss_pred HHHHHHhcchhHHHHhHHHhhcCCceEEEecCcCceEeeeEEEEeeeeccccccccCcccccCCHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999777533211 122222 2233222
Q ss_pred ---------------CCCHHHHHHHHHHHhccCC
Q 042234 588 ---------------SEHPLAKAIVEYAKKFRED 606 (658)
Q Consensus 588 ---------------s~hp~~~ai~~~~~~~~~~ 606 (658)
..+|.++||+......|.+
T Consensus 491 g~v~~~~~~g~~~~~~GspTE~AlL~f~~~LG~~ 524 (1034)
T KOG0204|consen 491 GSVVKPEKGGEQPEQLGSPTECALLGFGLKLGMD 524 (1034)
T ss_pred CeEEecCCCCcCccccCCHHHHHHHHHHHHhCcc
Confidence 3489999999999877654
No 25
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-39 Score=333.24 Aligned_cols=289 Identities=21% Similarity=0.292 Sum_probs=240.5
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCe
Q 042234 291 EGTDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAK 370 (658)
Q Consensus 291 ~~~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~ 370 (658)
.+++|-+. ..+..+++++..+...+++.+-+....|+.-...++.|+| ||+ |.++.++.|+||||+.++.|+.
T Consensus 93 ~~~DW~DF-~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVlR---DGk---w~E~eAs~lVPGDIlsik~GdI 165 (942)
T KOG0205|consen 93 RPPDWQDF-VGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVLR---DGK---WSEQEASILVPGDILSIKLGDI 165 (942)
T ss_pred CCcchhhh-hhhheeeeecceeeeeeccccchHHHHHHhccCcccEEee---cCe---eeeeeccccccCceeeeccCCE
Confidence 45677765 4566777888888888899998888889887788999999 998 8999999999999999999999
Q ss_pred eeecEEEEecce-eeecccccCCCcceeecCCCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHH
Q 042234 371 VASDGYVLWGQS-HVNESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFA 449 (658)
Q Consensus 371 iPaD~~vl~g~~-~vdes~LtGEs~pv~k~~g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~ 449 (658)
||||+++++|+- .||+|.|||||.|++|++|+.+|+||.+.+|++.++|+.||.+|..|+-.+++.. ......+++..
T Consensus 166 iPaDaRLl~gD~LkiDQSAlTGESLpvtKh~gd~vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVds-t~~~GHFqkVL 244 (942)
T KOG0205|consen 166 IPADARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKVL 244 (942)
T ss_pred ecCccceecCCccccchhhhcCCccccccCCCCceecccccccceEEEEEEEeccceeehhhHHhhcC-CCCcccHHHHH
Confidence 999999999997 9999999999999999999999999999999999999999999999999999876 55667788988
Q ss_pred HhHhhhhhHHHHHHHHHHHHH-HHHhhccCCCCCCcCCCchhhHHHHHHHHhheeee-eccccccchHHHHHHHHHHHHH
Q 042234 450 DRISKYFVPLVIILSFSTWLA-WFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVI-ACPCALGLATPTAVMVGTGVGA 527 (658)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~-~~P~~l~l~~~~~~~~~~~~~~ 527 (658)
+.+..++++.+.+..++..+. ++... ..++-...-+.++++ .+|.++|..+++.++++..+++
T Consensus 245 t~IGn~ci~si~~g~lie~~vmy~~q~---------------R~~r~~i~nLlvllIGgiPiamPtVlsvTMAiGs~rLa 309 (942)
T KOG0205|consen 245 TGIGNFCICSIALGMLIEITVMYPIQH---------------RLYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLS 309 (942)
T ss_pred HhhhhHHHHHHHHHHHHHHHhhhhhhh---------------hhhhhhhhheheeeecccccccceeeeehhhHHHHHHH
Confidence 888877665554333222222 22211 112222233444444 5999999999999999999999
Q ss_pred hcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEE--E-EeccCCCHHHHHHHHHHhh-ccCCCHHHHHHHHHHHh
Q 042234 528 SQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVS--T-KLLKNMVLRDFYEVVAATE-VNSEHPLAKAIVEYAKK 602 (658)
Q Consensus 528 ~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~--~-~~~~~~~~~~~~~~~~~~~-~~s~hp~~~ai~~~~~~ 602 (658)
++|...|...++|+++.+|++|+|||||||.|++++.+ + ...++.+.++++-.|+.+. ..+.+.+++|++...++
T Consensus 310 qqgAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~~~L~A~rAsr~en~DAID~A~v~~L~d 388 (942)
T KOG0205|consen 310 QQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDDVLLTAARASRKENQDAIDAAIVGMLAD 388 (942)
T ss_pred hcccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHHHHHHHHHHhhhcChhhHHHHHHHhhcC
Confidence 99999999999999999999999999999999999998 5 3456788888877776554 46779999999987754
No 26
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=1e-36 Score=361.63 Aligned_cols=261 Identities=14% Similarity=0.137 Sum_probs=212.8
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCC-CCceeeEEeeCCCCCCCCEEEEeCCCe
Q 042234 292 GTDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDED-GNVISEEEIDSRLIQRNDVIKIIPGAK 370 (658)
Q Consensus 292 ~~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~-g~~~~~~~i~~~~l~~GDii~v~~ge~ 370 (658)
+..++...++++++..+++++|++.|+|+++.++ +..++|+| + |+ +++++++||+|||+|.|++||+
T Consensus 50 ~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~n------~~~~~v~~---~~~~---~~~i~~~~l~~GDiv~l~~g~~ 117 (1057)
T TIGR01652 50 RGTSIVPLAFVLIVTAIKEAIEDIRRRRRDKEVN------NRLTEVLE---GHGQ---FVEIPWKDLRVGDIVKVKKDER 117 (1057)
T ss_pred ccHhHHhHHHHHHHHHHHHHHHHHHHHHhHHHHh------CcEEEEEC---CCCc---EEEeeeecccCCCEEEEcCCCc
Confidence 3455666677777889999999999999987654 57899987 5 66 7899999999999999999999
Q ss_pred eeecEEEEe-----cceeeecccccCCCcceeecC---------------------------------------------
Q 042234 371 VASDGYVLW-----GQSHVNESMITGEARPVAKRK--------------------------------------------- 400 (658)
Q Consensus 371 iPaD~~vl~-----g~~~vdes~LtGEs~pv~k~~--------------------------------------------- 400 (658)
||||+++++ |.++||||.|||||.|+.|.+
T Consensus 118 iPaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~ 197 (1057)
T TIGR01652 118 IPADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYP 197 (1057)
T ss_pred ccceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCccc
Confidence 999999997 678999999999999998853
Q ss_pred ---CCeeeeeceecC-ceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhc
Q 042234 401 ---GYTVIGGTVNEN-GVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGK 476 (658)
Q Consensus 401 ---g~~v~~Gt~~~~-g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (658)
.|.+++||.+.+ |++.+.|++||++|++++... ..+.+++++++.++++..+++.+.++++++++++..++..
T Consensus 198 l~~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk~~~n~~---~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i~~~~~~~ 274 (1057)
T TIGR01652 198 LSPDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRNAT---QAPSKRSRLEKELNFLIIILFCLLFVLCLISSVGAGIWND 274 (1057)
T ss_pred CCHHHhHhcCCEecCCCeEEEEEEEEchhhhhhhcCC---CCcccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHheec
Confidence 156889999999 999999999999998877543 5567789999999999988887777777766665333321
Q ss_pred cCCCCCCcCC-------CchhhHHHHHHHHhheeeeeccccccchHHHHHHHHH------HHHHhc----CeEEecchHh
Q 042234 477 FHSYPESWIP-------SSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGT------GVGASQ----GVLIKGGQAL 539 (658)
Q Consensus 477 ~~~~~~~~~~-------~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~------~~~~~~----gi~~k~~~~~ 539 (658)
.. ....|+- .....+...+.+++.++...+|.+|++.+.++...+. .++.++ ++.+|+.+.+
T Consensus 275 ~~-~~~~~yl~~~~~~~~~~~~~~~~~~~~~~L~~~~IPisL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~vr~~~~~ 353 (1057)
T TIGR01652 275 AH-GKDLWYIRLDVSERNAAANGFFSFLTFLILFSSLIPISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLN 353 (1057)
T ss_pred cc-CCCccceecCcccccchhHHHHHHHHHHHHHhhhcceeeeehHHHHHHHHHHHHhhhhhhhccccCCcceeecCCCh
Confidence 11 1112321 0112344567788888899999999999999999988 667653 5999999999
Q ss_pred hhhcCCcEEEecCCCcccCCceeEEEEEe
Q 042234 540 ESAHKVNCIVFDKTGTLTVGKPVVVSTKL 568 (658)
Q Consensus 540 e~lg~v~~i~~DKTGTLT~~~~~v~~~~~ 568 (658)
|+||++++||+|||||||+|+|+++++..
T Consensus 354 E~LG~v~~I~sDKTGTLT~N~M~~~~~~i 382 (1057)
T TIGR01652 354 EELGQVEYIFSDKTGTLTQNIMEFKKCSI 382 (1057)
T ss_pred HHhcCeeEEEEcCCCceeeeeEEEEEEEE
Confidence 99999999999999999999999999864
No 27
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=1.1e-36 Score=302.89 Aligned_cols=223 Identities=28% Similarity=0.518 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCe-EEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEEEe
Q 042234 301 MLISFILLGKYLEVLAKGKTSEAIAKLMDLAPET-ATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLW 379 (658)
Q Consensus 301 ~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~-~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~ 379 (658)
+++++++++.+++.++++|+++.++++++..+++ ++|+| ||+ ++++++++|+|||+|.+++||++||||++++
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r---~~~---~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~ 74 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIR---DGR---WQKIPSSELVPGDIIILKAGDIVPADGILLE 74 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEE---TTE---EEEEEGGGT-TTSEEEEETTEBESSEEEEEE
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEe---ccc---cccchHhhccceeeeecccccccccCcccee
Confidence 3677889999999999999999999999888887 89998 887 8999999999999999999999999999999
Q ss_pred -cceeeecccccCCCcceeec-----CCCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHh
Q 042234 380 -GQSHVNESMITGEARPVAKR-----KGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRIS 453 (658)
Q Consensus 380 -g~~~vdes~LtGEs~pv~k~-----~g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~ 453 (658)
|.+.||||.+|||+.|+.|. +|+.+|+||.+.+|++.++|++||.+|..+++.+.+...+.+++++++..+++.
T Consensus 75 ~g~~~vd~s~ltGes~pv~k~~~~~~~~~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00122_consen 75 SGSAYVDESALTGESEPVKKTPLPLNPGNIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIA 154 (230)
T ss_dssp SSEEEEECHHHHSBSSEEEESSSCCCTTTEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHH
Confidence 99999999999999999999 999999999999999999999999999999999998888887899999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHHhcCeEE
Q 042234 454 KYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLI 533 (658)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~ 533 (658)
.+++++.++++++++++|++... ..++...+..++++++.+|||++++++++++..+..+++++|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~~~i~v 222 (230)
T PF00122_consen 155 KILIIIILAIAILVFIIWFFNDS------------GISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAKNGIIV 222 (230)
T ss_dssp HHHHHHHHHHHHHHHHHCHTGST------------TCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHhcccccchhhhccceeccc------------ccccccccccccceeeeecccceeehHHHHHHHHHHHHHHCCEEE
Confidence 99999999888888776665210 125667888899999999999999999999999999999999999
Q ss_pred ecchHhhh
Q 042234 534 KGGQALES 541 (658)
Q Consensus 534 k~~~~~e~ 541 (658)
|+++++|.
T Consensus 223 ~~~~a~E~ 230 (230)
T PF00122_consen 223 KNLSALEA 230 (230)
T ss_dssp SSTTHHHH
T ss_pred eCcccccC
Confidence 99999985
No 28
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-36 Score=324.26 Aligned_cols=282 Identities=21% Similarity=0.278 Sum_probs=226.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeec
Q 042234 262 LDVLISLGTNAAYFYSMYSVLRAATSPHFEGTDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLD 341 (658)
Q Consensus 262 ~d~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~ 341 (658)
.++|+-=.+-.-|++.+++++.+. .++|+.+++.++++.+++..+..+..++..+.+++|.+. ...++|+|
T Consensus 186 ~~iLv~EvL~PfYlFQ~fSv~lW~------~d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~-~~~V~V~R-- 256 (1140)
T KOG0208|consen 186 SQILVKEVLNPFYLFQAFSVALWL------ADSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKF-TCPVTVIR-- 256 (1140)
T ss_pred HHHHHHhccchHHHHHhHHhhhhh------cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEE--
Confidence 334444444456777777766663 467888888888899999999999999999998888775 46899999
Q ss_pred CCCCceeeEEeeCCCCCCCCEEEEeC-CCeeeecEEEEecceeeecccccCCCcceeecC-------------------C
Q 042234 342 EDGNVISEEEIDSRLIQRNDVIKIIP-GAKVASDGYVLWGQSHVNESMITGEARPVAKRK-------------------G 401 (658)
Q Consensus 342 ~~g~~~~~~~i~~~~l~~GDii~v~~-ge~iPaD~~vl~g~~~vdes~LtGEs~pv~k~~-------------------g 401 (658)
||. +++|.++||+||||+.+.+ |-..|||+++++|+|.||||+|||||.|+.|.+ .
T Consensus 257 -~g~---~~ti~S~eLVPGDil~i~~~~~~~PcDa~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~r 332 (1140)
T KOG0208|consen 257 -DGF---WETVDSSELVPGDILYIPPPGKIMPCDALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSR 332 (1140)
T ss_pred -CCE---EEEEeccccccccEEEECCCCeEeecceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcCc
Confidence 886 8999999999999999998 999999999999999999999999999999965 4
Q ss_pred CeeeeeceecC------ceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhh
Q 042234 402 YTVIGGTVNEN------GVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAG 475 (658)
Q Consensus 402 ~~v~~Gt~~~~------g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (658)
+.+|+||.+.+ +.+.++|++||.+|..|++.+.+..++....++-+..-++...+ .+++.+.++...+..
T Consensus 333 h~lfcGT~vlq~r~~~g~~v~a~V~RTGF~T~KGqLVRsilyPkP~~fkfyrds~~fi~~l----~~ia~~gfiy~~i~l 408 (1140)
T KOG0208|consen 333 HTLFCGTKVLQARAYLGGPVLAMVLRTGFSTTKGQLVRSILYPKPVNFKFYRDSFKFILFL----VIIALIGFIYTAIVL 408 (1140)
T ss_pred ceeeccceEEEeecCCCCceEEEEEeccccccccHHHHhhcCCCCcccHHHHHHHHHHHHH----HHHHHHHHHHHhHhH
Confidence 67999998864 68999999999999999999977655544333333333333222 222333332211111
Q ss_pred ccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCc
Q 042234 476 KFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGT 555 (658)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGT 555 (658)
... ..++...+.+++.++.+.+|+|||.++.++...+..|++|+||+|-+++.+...|++|++|||||||
T Consensus 409 ~~~----------g~~~~~iiirsLDliTi~VPPALPAaltvG~~~a~~RLkkk~IfCisP~rIn~~G~i~~~cFDKTGT 478 (1140)
T KOG0208|consen 409 NLL----------GVPLKTIIIRSLDLITIVVPPALPAALTVGIIYAQSRLKKKGIFCISPQRINLCGKLNLVCFDKTGT 478 (1140)
T ss_pred HHc----------CCCHHHHhhhhhcEEEEecCCCchhhhhHHHHHHHHHHHhcCeEEcCccceeecceeeEEEEcCCCc
Confidence 100 0256778889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeEEEEEecc
Q 042234 556 LTVGKPVVVSTKLLK 570 (658)
Q Consensus 556 LT~~~~~v~~~~~~~ 570 (658)
||++.+.+-.+.+.+
T Consensus 479 LTEdGLDl~gv~~~~ 493 (1140)
T KOG0208|consen 479 LTEDGLDLWGVVPVE 493 (1140)
T ss_pred ccccceeEEEEEecc
Confidence 999999999888743
No 29
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=2.4e-34 Score=338.17 Aligned_cols=261 Identities=14% Similarity=0.079 Sum_probs=203.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeee
Q 042234 293 TDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVA 372 (658)
Q Consensus 293 ~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iP 372 (658)
..++...++++++.++++.+|++.|+|+++.++ +..++|++ +|+ ++++++++|++||+|.|++||+||
T Consensus 137 ~t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N------~~~~~v~~---~~~---~~~i~~~~i~vGDiv~v~~ge~iP 204 (1178)
T PLN03190 137 GASILPLAFVLLVTAVKDAYEDWRRHRSDRIEN------NRLAWVLV---DDQ---FQEKKWKDIRVGEIIKIQANDTLP 204 (1178)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc------CcEEEEEE---CCe---EEEEeHHHCCCCCEEEECCCCEee
Confidence 345566777888889999999999999999765 57889988 776 789999999999999999999999
Q ss_pred ecEEEEe-----cceeeecccccCCCcceeecC---------------------------------------------CC
Q 042234 373 SDGYVLW-----GQSHVNESMITGEARPVAKRK---------------------------------------------GY 402 (658)
Q Consensus 373 aD~~vl~-----g~~~vdes~LtGEs~pv~k~~---------------------------------------------g~ 402 (658)
||+++++ |.|+|||+.|||||.|+.|.+ +|
T Consensus 205 aD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~n 284 (1178)
T PLN03190 205 CDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSN 284 (1178)
T ss_pred eeEEEEeccCCCceEEEEccccCCeeeeeEecccchhhhcchhhhhceEEEEEeCCCccceeEEEEEEECCCcccCCccc
Confidence 9999998 889999999999999999853 24
Q ss_pred eeeeeceecCc-eEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCC
Q 042234 403 TVIGGTVNENG-VLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYP 481 (658)
Q Consensus 403 ~v~~Gt~~~~g-~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (658)
.+++||.+++. ++++.|++||++|+..+... .++.|++++++.+|++..+++.+.++++++++++...+.......
T Consensus 285 ~llRG~~LrnT~~i~GvVVYTG~dTK~~~N~~---~~~~K~S~le~~~N~~vi~l~~i~~~l~~i~~i~~~~~~~~~~~~ 361 (1178)
T PLN03190 285 IILRGCELKNTAWAIGVAVYCGRETKAMLNNS---GAPSKRSRLETRMNLEIIILSLFLIALCTIVSVCAAVWLRRHRDE 361 (1178)
T ss_pred eeeccceecCCceEEEEEEEechhhhHhhcCC---CCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 56677777764 89999999999998554422 455788999999999998888888777777665532221111100
Q ss_pred ---CCcCCCc---------h--h----hHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHHhcC----------eEE
Q 042234 482 ---ESWIPSS---------M--D----SFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQG----------VLI 533 (658)
Q Consensus 482 ---~~~~~~~---------~--~----~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~~g----------i~~ 533 (658)
-.|+... . . .....+..++.++...+|.+|.+.+.+.......++.++. +.+
T Consensus 362 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~lil~~~~IPISL~Vtleivk~~qa~~I~~D~~m~~~~~~~~~~v 441 (1178)
T PLN03190 362 LDTIPFYRRKDFSEGGPKNYNYYGWGWEIFFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDDQMYDEASNSRFQC 441 (1178)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhhcceeeeeeHHHHHHHHHHHHHhhhhcccccCCCccee
Confidence 0121100 0 0 0122333445566688999999999999987676666543 789
Q ss_pred ecchHhhhhcCCcEEEecCCCcccCCceeEEEEEe
Q 042234 534 KGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKL 568 (658)
Q Consensus 534 k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~ 568 (658)
|+.+.+|+||+|++||+|||||||+|+|+++++..
T Consensus 442 r~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i 476 (1178)
T PLN03190 442 RALNINEDLGQIKYVFSDKTGTLTENKMEFQCASI 476 (1178)
T ss_pred ccCcchhhhccceEEEEcCCCccccceEEEEEEEE
Confidence 99999999999999999999999999999999865
No 30
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-34 Score=288.09 Aligned_cols=345 Identities=23% Similarity=0.342 Sum_probs=261.5
Q ss_pred CccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCC-CeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCC
Q 042234 292 GTDFFETSSMLISF-ILLGKYLEVLAKGKTSEAIAKLMDLAP-ETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGA 369 (658)
Q Consensus 292 ~~~y~~~~~~ll~~-~~~~~~l~~~~~~k~~~~~~~l~~~~~-~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge 369 (658)
...|.....+++++ +++..+-|..++.|...+..+|++.+. ..+++++ .||+ ++.+++.+|+.||+|+|+.||
T Consensus 61 ~~~f~~~i~~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~--~~g~---~~~v~st~Lk~gdiV~V~age 135 (681)
T COG2216 61 SRLFNLAITIILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLR--ADGS---IEMVPATELKKGDIVLVEAGE 135 (681)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhc--CCCC---eeeccccccccCCEEEEecCC
Confidence 34455554444444 468888899988887777777766433 3566665 3576 889999999999999999999
Q ss_pred eeeecEEEEecceeeecccccCCCcceeecCC---CeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhH
Q 042234 370 KVASDGYVLWGQSHVNESMITGEARPVAKRKG---YTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQ 446 (658)
Q Consensus 370 ~iPaD~~vl~g~~~vdes~LtGEs~pv~k~~g---~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~ 446 (658)
.||+||.|++|.+.||||.+||||.|+-|..| +.+-.||.+.+.+++++++....+|.+.|++.+++.++++|+|.+
T Consensus 136 ~IP~DGeVIeG~asVdESAITGESaPViresGgD~ssVtGgT~v~SD~l~irita~pG~sFlDrMI~LVEgA~R~KTPNE 215 (681)
T COG2216 136 IIPSDGEVIEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWLKIRITANPGETFLDRMIALVEGAERQKTPNE 215 (681)
T ss_pred CccCCCeEEeeeeecchhhccCCCcceeeccCCCcccccCCcEEeeeeEEEEEEcCCCccHHHHHHHHhhchhccCChhH
Confidence 99999999999999999999999999999998 889999999999999999999999999999999999999999977
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHH
Q 042234 447 KFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVG 526 (658)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~ 526 (658)
--...+..-+..+.+ +++++ .|.+..+... -...+...++++++.+|..++--++--=..++.|.
T Consensus 216 IAL~iLL~~LTliFL-~~~~T--l~p~a~y~~g------------~~~~i~~LiALlV~LIPTTIGgLLsAIGIAGMdRv 280 (681)
T COG2216 216 IALTILLSGLTLIFL-LAVAT--LYPFAIYSGG------------GAASVTVLVALLVCLIPTTIGGLLSAIGIAGMDRV 280 (681)
T ss_pred HHHHHHHHHHHHHHH-HHHHh--hhhHHHHcCC------------CCcCHHHHHHHHHHHhcccHHHHHHHhhhhhhhHh
Confidence 655544332222211 11111 1222211100 01123445677888888888776666666688899
Q ss_pred HhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhccCC
Q 042234 527 ASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAKKFRED 606 (658)
Q Consensus 527 ~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~hp~~~ai~~~~~~~~~~ 606 (658)
.+.+++-+++.+.|..|.+|+++.|||||+|-|+-.-.++++.++.+.+++...|...+-..+.|-.++|+..|++.+..
T Consensus 281 ~~~NViA~SGRAVEaaGDvdtliLDKTGTIT~GnR~A~~f~p~~gv~~~~la~aa~lsSl~DeTpEGrSIV~LA~~~~~~ 360 (681)
T COG2216 281 TQFNVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFIPVPGVSEEELADAAQLASLADETPEGRSIVELAKKLGIE 360 (681)
T ss_pred hhhceeecCcchhhhcCCccEEEecccCceeecchhhhheecCCCCCHHHHHHHHHHhhhccCCCCcccHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999998888889999999999999987533
Q ss_pred CCCCCCCCcccceeecC-CeEEE-EEc-CeEEEEcch----hhhhhcCCCCChhhhh
Q 042234 607 EDNPLWPEAHDFISITG-HGVKA-TVH-NKEIMVGNK----SLMLDNNIDIPPDAEE 656 (658)
Q Consensus 607 ~~~~~~~~~~~~~~~~g-~Gi~~-~~~-~~~~~iGs~----~~~~~~~i~~~~~~~~ 656 (658)
.+........++.+... -.++| ..+ +++++-|+. +|+++.|-.+|+++..
T Consensus 361 ~~~~~~~~~~~fvpFtA~TRmSGvd~~~~~~irKGA~dai~~~v~~~~g~~p~~l~~ 417 (681)
T COG2216 361 LREDDLQSHAEFVPFTAQTRMSGVDLPGGREIRKGAVDAIRRYVRERGGHIPEDLDA 417 (681)
T ss_pred CCcccccccceeeecceecccccccCCCCceeecccHHHHHHHHHhcCCCCCHHHHH
Confidence 21111110112222221 13333 233 378999994 6778888889988764
No 31
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-34 Score=307.88 Aligned_cols=253 Identities=20% Similarity=0.294 Sum_probs=228.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEE
Q 042234 298 TSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYV 377 (658)
Q Consensus 298 ~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~v 377 (658)
..++++.+..+...+..++..|+.+.++.+.++.|..++|+| ||+ ...+..++|++||++.++.|++||||.++
T Consensus 128 ~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~ViR---dg~---k~~i~~eelVvGD~v~vk~GdrVPADiRi 201 (1019)
T KOG0203|consen 128 LGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVIR---DGE---KMTINAEELVVGDLVEVKGGDRVPADIRI 201 (1019)
T ss_pred EEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheeee---cce---eEEechhhcccccceeeccCCcccceeEE
Confidence 345555555666777888999999999999999999999999 997 78999999999999999999999999999
Q ss_pred Eecce-eeecccccCCCcceeecC----------CCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhH
Q 042234 378 LWGQS-HVNESMITGEARPVAKRK----------GYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQ 446 (658)
Q Consensus 378 l~g~~-~vdes~LtGEs~pv~k~~----------g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~ 446 (658)
+++.. ++|+|+|||||.|..+.+ .|+-|.+|.+.+|.+++.|++||++|.+|++..+-..-+..++|++
T Consensus 202 is~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~st~~veG~~~givi~tGd~Tv~G~ia~l~~~~~~~~t~~~ 281 (1019)
T KOG0203|consen 202 ISATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTGRGIVIATGDRTVMGRIASLASGLEDGKTPIA 281 (1019)
T ss_pred EEecceeEeccccccccCCccCCccccccCchhheeeeeeeeEEecceEEEEEEecCCceEEeehhhhhccCCCCCCcch
Confidence 99875 999999999999999865 4789999999999999999999999999999998777788899999
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHH
Q 042234 447 KFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVG 526 (658)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~ 526 (658)
+.++++..+...+.+.+++..|++....++ .+..++.++++++++.+|.+|+..+...+....+++
T Consensus 282 ~ei~~fi~~it~vAi~~~i~fF~~~~~~gy--------------~~l~avv~~i~iivAnvPeGL~~tvTv~LtltakrM 347 (1019)
T KOG0203|consen 282 KEIEHFIHIITGVAIFLGISFFILALILGY--------------EWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAKRM 347 (1019)
T ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHhhcc--------------hhHHHhhhhheeEEecCcCCccceehhhHHHHHHHH
Confidence 999999998888888888777766554443 467778889999999999999999999999999999
Q ss_pred HhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEecc
Q 042234 527 ASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLK 570 (658)
Q Consensus 527 ~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~ 570 (658)
+++++++|+.++.|.||...+||+|||||||+|.|.|.+++..+
T Consensus 348 a~Knc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw~d~ 391 (1019)
T KOG0203|consen 348 ARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLWFDN 391 (1019)
T ss_pred hhceeEEeeeeheeecccceeEeecceeeEEecceEEEeeccCC
Confidence 99999999999999999999999999999999999999988754
No 32
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.3e-31 Score=278.84 Aligned_cols=288 Identities=21% Similarity=0.190 Sum_probs=216.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeC---CC
Q 042234 293 TDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIP---GA 369 (658)
Q Consensus 293 ~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~---ge 369 (658)
++||.++.+-++++..-+.--.+||.|+...++++.. .|..+.|+| +++ |+.+.++||.|||+|.|.. ..
T Consensus 214 DeyWYySlFtLfMli~fE~tlV~Qrm~~lse~R~Mg~-kpy~I~v~R---~kK---W~~l~seeLlPgDvVSI~r~~ed~ 286 (1160)
T KOG0209|consen 214 DEYWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTMGN-KPYTINVYR---NKK---WVKLMSEELLPGDVVSIGRGAEDS 286 (1160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CceEEEEEe---cCc---ceeccccccCCCceEEeccCcccC
Confidence 5677777777777666666667788888777776644 477888998 777 8999999999999999987 67
Q ss_pred eeeecEEEEecceeeecccccCCCcceeecC-----------------CCeeeeeceec-------------CceEEEEE
Q 042234 370 KVASDGYVLWGQSHVNESMITGEARPVAKRK-----------------GYTVIGGTVNE-------------NGVLHIKA 419 (658)
Q Consensus 370 ~iPaD~~vl~g~~~vdes~LtGEs~pv~k~~-----------------g~~v~~Gt~~~-------------~g~~~~~v 419 (658)
.||||.+++.|+|.|||+||||||.|..|.+ ...+|+||.+. +|.+.+.|
T Consensus 287 ~vPCDllLL~GsciVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~V 366 (1160)
T KOG0209|consen 287 HVPCDLLLLRGSCIVNEAMLTGESVPLMKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYV 366 (1160)
T ss_pred cCCceEEEEecceeechhhhcCCCccccccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEE
Confidence 8999999999999999999999999999954 35699999875 57899999
Q ss_pred EEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHH
Q 042234 420 TRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFG 499 (658)
Q Consensus 420 ~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (658)
++||.+|..|++.+.+.-...+-+...+ +.+ +|+.++++.|++.. |+.+......+ ..+-++.++-+
T Consensus 367 lrTGFeTSQGkLvRtilf~aervTaNn~--Etf--~FILFLlVFAiaAa--~Yvwv~Gskd~-------~RsrYKL~LeC 433 (1160)
T KOG0209|consen 367 LRTGFETSQGKLVRTILFSAERVTANNR--ETF--IFILFLLVFAIAAA--GYVWVEGSKDP-------TRSRYKLFLEC 433 (1160)
T ss_pred EeccccccCCceeeeEEecceeeeeccH--HHH--HHHHHHHHHHHHhh--heEEEecccCc-------chhhhheeeee
Confidence 9999999999998866554444343322 223 33333333333322 22221111111 11334556667
Q ss_pred hheeeeeccccccchHHHHHHHHHHHHHhcCeEEecchHhhhhcCCcEEEecCCCcccCCceeEEEEEeccC--------
Q 042234 500 ISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKN-------- 571 (658)
Q Consensus 500 ~~vli~~~P~~l~l~~~~~~~~~~~~~~~~gi~~k~~~~~e~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~-------- 571 (658)
+.++...+|.-||+-++++...++..++|.|++|..|-.+.-.|++|..|||||||||+..|.|..+.-.+.
T Consensus 434 ~LIlTSVvPpELPmELSmAVNsSL~ALak~~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~~~~~~~~~~~ 513 (1160)
T KOG0209|consen 434 TLILTSVVPPELPMELSMAVNSSLIALAKLGVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGLSADEGALTPA 513 (1160)
T ss_pred eEEEeccCCCCCchhhhHHHHHHHHHHHHhceeecCccccccCCceeEEEecCCCccccccEEEEecccccCCcccccch
Confidence 778888999999999999999999999999999999999999999999999999999999999998765221
Q ss_pred --CCHH--HHHHHHHHhh----ccCCCHHHHHHHHHH
Q 042234 572 --MVLR--DFYEVVAATE----VNSEHPLAKAIVEYA 600 (658)
Q Consensus 572 --~~~~--~~~~~~~~~~----~~s~hp~~~ai~~~~ 600 (658)
.+.+ ++++-|+++- .--.+|+++|.++..
T Consensus 514 s~~p~~t~~vlAscHsLv~le~~lVGDPlEKA~l~~v 550 (1160)
T KOG0209|consen 514 SKAPNETVLVLASCHSLVLLEDKLVGDPLEKATLEAV 550 (1160)
T ss_pred hhCCchHHHHHHHHHHHHHhcCcccCChHHHHHHHhc
Confidence 1222 3444444442 335699999999876
No 33
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.1e-28 Score=250.95 Aligned_cols=263 Identities=16% Similarity=0.181 Sum_probs=211.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeee
Q 042234 293 TDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVA 372 (658)
Q Consensus 293 ~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iP 372 (658)
..||....+++++.++.+.++++.|++.++..++ +.-+++. +||- ...++++|++||+|.+..+++||
T Consensus 129 ~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Ns------e~y~~lt--r~~~----~~~~Ss~i~vGDvi~v~K~~RVP 196 (1051)
T KOG0210|consen 129 STYWGPLGFVLTITLIKEAVDDLKRRRRDRELNS------EKYTKLT--RDGT----RREPSSDIKVGDVIIVHKDERVP 196 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhheeec--cCCc----ccccccccccccEEEEecCCcCC
Confidence 4577778889999999999999999998887663 3334443 3664 34499999999999999999999
Q ss_pred ecEEEEe-----cceeeecccccCCCcceeecC-----------------------------------------------
Q 042234 373 SDGYVLW-----GQSHVNESMITGEARPVAKRK----------------------------------------------- 400 (658)
Q Consensus 373 aD~~vl~-----g~~~vdes~LtGEs~pv~k~~----------------------------------------------- 400 (658)
||.+++. |+|+|.+..|+||+..+.|-|
T Consensus 197 ADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~Lsv 276 (1051)
T KOG0210|consen 197 ADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSV 276 (1051)
T ss_pred cceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEEecCCCCCcccc
Confidence 9999996 788999999999998887721
Q ss_pred CCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCC
Q 042234 401 GYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSY 480 (658)
Q Consensus 401 g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (658)
.|.++++|++.+|.+++.|+|||.+|+...... .++.|-..++..+|.+.+++...++++++++...-.+ +
T Consensus 277 entLWanTVvAs~t~~gvVvYTG~dtRsvMNts---~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~~~g~----~-- 347 (1051)
T KOG0210|consen 277 ENTLWANTVVASGTAIGVVVYTGRDTRSVMNTS---RPRSKVGLLELEINGLTKILFCFVLVLSIVMVAMKGF----G-- 347 (1051)
T ss_pred cceeeeeeeEecCcEEEEEEEecccHHHHhccC---CcccccceeeeecccHHHHHHHHHHHHHHHHHHhhcC----C--
Confidence 578999999999999999999999997543222 3444445577888899999988888888765442211 1
Q ss_pred CCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHHh----cCeEEecchHhhhhcCCcEEEecCCCcc
Q 042234 481 PESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGAS----QGVLIKGGQALESAHKVNCIVFDKTGTL 556 (658)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~~----~gi~~k~~~~~e~lg~v~~i~~DKTGTL 556 (658)
++|+..+.+++.++...+|.+|.+.+.++...-...... .|.++|++..-|+||++.++++||||||
T Consensus 348 ---------~~wyi~~~RfllLFS~IIPISLRvnlDmaK~~ys~~i~~D~~IpgtvvRSstIPEeLGRIsylLtDKTGTL 418 (1051)
T KOG0210|consen 348 ---------SDWYIYIIRFLLLFSSIIPISLRVNLDMAKIVYSWQIEHDKNIPGTVVRSSTIPEELGRISYLLTDKTGTL 418 (1051)
T ss_pred ---------CchHHHHHHHHHHHhhhceeEEEEehhHHHhhHhhhcccCCCCCceeeecCCChHHhcceEEEEecCcCcc
Confidence 257888999999999999999999999998887766654 4889999999999999999999999999
Q ss_pred cCCceeEEEEEecc----CCCHHHHHHHHHHhh
Q 042234 557 TVGKPVVVSTKLLK----NMVLRDFYEVVAATE 585 (658)
Q Consensus 557 T~~~~~v~~~~~~~----~~~~~~~~~~~~~~~ 585 (658)
|+|+|++++++... ....+++-+...++.
T Consensus 419 TqNEM~~KKiHLGTv~~s~e~~~eV~~~i~s~~ 451 (1051)
T KOG0210|consen 419 TQNEMEFKKIHLGTVAYSAETMDEVSQHIQSLY 451 (1051)
T ss_pred ccchheeeeeeeeeeeccHhHHHHHHHHHHHhh
Confidence 99999999998753 223445555555554
No 34
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=255.69 Aligned_cols=263 Identities=14% Similarity=0.125 Sum_probs=209.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCCCCEEEEeCCCeee
Q 042234 293 TDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQRNDVIKIIPGAKVA 372 (658)
Q Consensus 293 ~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iP 372 (658)
.....+.++++.+.++++.+|++.|++.++.++ ..++.|++ ++.. ..+..|++|++||+|.+..+|.+|
T Consensus 81 ~~~~~pl~~vl~~t~iKd~~eD~rR~~~D~~iN------~~~~~v~~---~~~~--~~~~~wk~~~vGd~v~v~~~~~~p 149 (1151)
T KOG0206|consen 81 YTTLVPLLFVLGITAIKDAIEDYRRHKQDKEVN------NRKVEVLR---GDGC--FVEKKWKDVRVGDIVRVEKDEFVP 149 (1151)
T ss_pred cceeeceeeeehHHHHHHHHhhhhhhhccHHhh------cceeEEec---CCce--eeeeccceeeeeeEEEeccCCccc
Confidence 334455666778889999999999999999877 56788886 3221 578899999999999999999999
Q ss_pred ecEEEEe-----cceeeecccccCCCcceeecC-----------------------------------------------
Q 042234 373 SDGYVLW-----GQSHVNESMITGEARPVAKRK----------------------------------------------- 400 (658)
Q Consensus 373 aD~~vl~-----g~~~vdes~LtGEs~pv~k~~----------------------------------------------- 400 (658)
||.++++ |.|+|++++|+||+..+.|+.
T Consensus 150 aD~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~~~ly~f~g~l~~~~~~~pl~~ 229 (1151)
T KOG0206|consen 150 ADLLLLSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPNANLYTFVGNLELQGQIYPLSP 229 (1151)
T ss_pred cceEEecCCCCCceeEEEEeecCCccccceeeehhhhhcccccccccccCCceEEcCCcccHhhhhhheeeccCCCCCcH
Confidence 9999996 668999999999999887721
Q ss_pred CCeeeeeceecCc-eEEEEEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccC-
Q 042234 401 GYTVIGGTVNENG-VLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFH- 478 (658)
Q Consensus 401 g~~v~~Gt~~~~g-~~~~~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 478 (658)
.+.++.|+.+++. ++.+.|+.+|++|++++... .++.+++++++..++....++++.+.++++..+....+....
T Consensus 230 ~~~Llrg~~lrNT~~v~G~vv~tG~dtK~~~n~~---~~~~Krs~ier~~n~~i~~~~~~l~~~~~~~~i~~~~~~~~~~ 306 (1151)
T KOG0206|consen 230 DNLLLRGSRLRNTEWVYGVVVFTGHDTKLMQNSG---KPPSKRSRIERKMNKIIILLFVLLILMCLISAIGFAIWTRQDG 306 (1151)
T ss_pred HHcccCCceeccCcEEEEEEEEcCCcchHHHhcC---CCccccchhhhhhhhhHHHHHHHHHHHHHHHHhhhheeeeecc
Confidence 2457888999885 89999999999998877655 578889999999999988888888887777666543332211
Q ss_pred CC-CCCcCCCch---hhHHHHHHHHhheeeeeccccccchHHHHHHHHHHHHH----------hcCeEEecchHhhhhcC
Q 042234 479 SY-PESWIPSSM---DSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGA----------SQGVLIKGGQALESAHK 544 (658)
Q Consensus 479 ~~-~~~~~~~~~---~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~~~----------~~gi~~k~~~~~e~lg~ 544 (658)
.+ +..|+.... ......+..++.++...+|.+|.+++.+.......... ...+.+|+.+..|+||+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~f~t~~il~~~liPISLyvsiEiik~~qs~fi~~D~~my~~e~d~~~~~rtsnl~eeLGq 386 (1151)
T KOG0206|consen 307 RHNGEWWYLSPSEAAYAGFVHFLTFIILYQYLIPISLYVSIEIVKVLQSIFINNDLDMYDEETDTPAQARTSNLNEELGQ 386 (1151)
T ss_pred cccCchhhhcCchHHHHHHHHHHHHHhhhhceEEEEEEEEeeehHHHHHHHcchHHHhhhccCCCccccccCCchhhhcc
Confidence 11 112222211 13345667777888889999999999999888775554 45788999999999999
Q ss_pred CcEEEecCCCcccCCceeEEEEEec
Q 042234 545 VNCIVFDKTGTLTVGKPVVVSTKLL 569 (658)
Q Consensus 545 v~~i~~DKTGTLT~~~~~v~~~~~~ 569 (658)
+++|++|||||||+|.|++.++.+.
T Consensus 387 v~yIfSDKTGTLT~N~M~F~kCsi~ 411 (1151)
T KOG0206|consen 387 VEYIFSDKTGTLTQNSMEFKKCSIN 411 (1151)
T ss_pred eeEEEEcCcCccccceeeeeccccc
Confidence 9999999999999999999988763
No 35
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.42 E-value=9.7e-13 Score=144.72 Aligned_cols=136 Identities=39% Similarity=0.649 Sum_probs=125.4
Q ss_pred cCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcccccccCCc-ceeEEEeeecCc
Q 042234 29 NGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLISTGED-MSKIHLQVDGIR 107 (658)
Q Consensus 29 ~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~-~~~~~~~v~gm~ 107 (658)
.||+|..|.+.+++++++.+|+.+..+++.++++.+.|+ ...+++.+.+.++++||++....++.. ..+-++++.||+
T Consensus 1 ~gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~-~~~~~~~i~~~ied~gf~~~~~~~~~~~~~~~~l~v~Gmt 79 (951)
T KOG0207|consen 1 KGMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYD-NIVSPESIKETIEDMGFEASLLSDSEITASKCYLSVNGMT 79 (951)
T ss_pred CCccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEe-eccCHHHHHHHhhcccceeeecccCccccceeEEEecCce
Confidence 489999999999999999999999999999999999999 778999999999999999887765432 346789999999
Q ss_pred cchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcCCCCcceeec
Q 042234 108 TDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTGSGRFKARIF 168 (658)
Q Consensus 108 c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g~~~~~~~~~ 168 (658)
|.+|+..||+.+++.+||.++.+.+.++.+.+.|||..++.+.+.+.+++.| |.+...
T Consensus 80 C~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~g---f~a~~i 137 (951)
T KOG0207|consen 80 CASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLG---FSAELI 137 (951)
T ss_pred eHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcC---ccceeh
Confidence 9999999999999999999999999999999999999999999999999999 666544
No 36
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.19 E-value=7.4e-11 Score=90.93 Aligned_cols=61 Identities=28% Similarity=0.580 Sum_probs=58.5
Q ss_pred EEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcCC
Q 042234 100 HLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTGS 160 (658)
Q Consensus 100 ~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g~ 160 (658)
+|.+.||+|++|+.+|++.|+++|||.++.+|+.++++.|.|++..+++++|.++|+++||
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 4789999999999999999999999999999999999999999999899999999999993
No 37
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.12 E-value=3.8e-10 Score=86.96 Aligned_cols=62 Identities=44% Similarity=0.813 Sum_probs=59.1
Q ss_pred EEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCc
Q 042234 25 RIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFE 86 (658)
Q Consensus 25 ~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 86 (658)
+|.|+||+|++|+.+|+++|.++|||.++.+|+.++++.+.+++...+++++.+.++++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 47899999999999999999999999999999999999999998878899999999999994
No 38
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.04 E-value=1.3e-09 Score=85.86 Aligned_cols=67 Identities=37% Similarity=0.663 Sum_probs=62.9
Q ss_pred eEEEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCccc
Q 042234 22 QLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEAT 88 (658)
Q Consensus 22 ~~~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 88 (658)
.+..+.++||+|.+|+..|+++|++++|+..+.+|+..+.+.+.++....+.+++.++++.+||.+.
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~ 68 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVE 68 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCee
Confidence 3567999999999999999999999999999999999999999999977899999999999999874
No 39
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.98 E-value=2.1e-09 Score=84.64 Aligned_cols=63 Identities=22% Similarity=0.478 Sum_probs=60.5
Q ss_pred eeEEEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcC
Q 042234 97 SKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTG 159 (658)
Q Consensus 97 ~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g 159 (658)
.+..+.++||+|..|+..|+++|.+++||.++.+|+..+++.|.||+...+.+++.+++++.|
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aG 64 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAG 64 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcC
Confidence 356899999999999999999999999999999999999999999999999999999999999
No 40
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.85 E-value=4.7e-09 Score=102.90 Aligned_cols=91 Identities=35% Similarity=0.495 Sum_probs=75.6
Q ss_pred CcEEEecCCCcccCCceeEEEEEeccCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhccCCCCCCCCCCcccceeecCC
Q 042234 545 VNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAKKFREDEDNPLWPEAHDFISITGH 624 (658)
Q Consensus 545 v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 624 (658)
|++||||||||||+|++.+ . . ...+.++.++...++.+.||++.++..++...... +...++.+.+|+
T Consensus 1 i~~i~fDktGTLt~~~~~v---~-~--~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 68 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV---A-P--PSNEAALAIAAALEQGSEHPIGKAIVEFAKNHQWS------KSLESFSEFIGR 68 (215)
T ss_dssp ESEEEEECCTTTBESHHEE---E-S--CSHHHHHHHHHHHHCTSTSHHHHHHHHHHHHHHHH------SCCEEEEEETTT
T ss_pred CeEEEEecCCCcccCeEEE---E-e--ccHHHHHHHHHHhhhcCCCcchhhhhhhhhhccch------hhhhhheeeeec
Confidence 5899999999999999999 1 1 66888999999999999999999999998763211 115788999999
Q ss_pred eEEEEEcCeEEEEcchhhhhhcCCC
Q 042234 625 GVKATVHNKEIMVGNKSLMLDNNID 649 (658)
Q Consensus 625 Gi~~~~~~~~~~iGs~~~~~~~~i~ 649 (658)
|+.+.+++. +. |+++|+.+.+..
T Consensus 69 ~~~~~~~~~-~~-g~~~~~~~~~~~ 91 (215)
T PF00702_consen 69 GISGDVDGI-YL-GSPEWIHELGIR 91 (215)
T ss_dssp EEEEEEHCH-EE-HHHHHHHHHHHH
T ss_pred ccccccccc-cc-ccchhhhhcccc
Confidence 999999988 66 999998766543
No 41
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.80 E-value=4.7e-05 Score=86.11 Aligned_cols=66 Identities=44% Similarity=0.809 Sum_probs=60.4
Q ss_pred EEEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCC-HHHHHHHHHhcCCcccc
Q 042234 23 LCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILN-YNQILAAIEDTGFEATL 89 (658)
Q Consensus 23 ~~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~-~~~i~~~i~~~Gy~~~~ 89 (658)
+..+.++||+|++|++++| ++++.|||.++.+|+.++++.+.+++...+ ++++.+.+++.||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 4579999999999999999 999999999999999999999999986555 78999999999998754
No 42
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.30 E-value=0.0019 Score=48.55 Aligned_cols=64 Identities=30% Similarity=0.506 Sum_probs=54.9
Q ss_pred EEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcc
Q 042234 24 CRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEA 87 (658)
Q Consensus 24 ~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 87 (658)
..+.+.|++|..|...+++.+...+++....+++......+.+++.......+...+...||.+
T Consensus 4 ~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 4 FTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 4689999999999999999999999999999999999999998766556677777777888753
No 43
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.24 E-value=0.0016 Score=49.03 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=54.5
Q ss_pred eEEEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcC
Q 042234 98 KIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTG 159 (658)
Q Consensus 98 ~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g 159 (658)
+..+.+.|++|..|+..+++.+...+++....++...+.+.+.|++...+...+...+...|
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 64 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAG 64 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcC
Confidence 45688999999999999999999999999999999999999999987667777766667666
No 44
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.0015 Score=60.24 Aligned_cols=63 Identities=29% Similarity=0.566 Sum_probs=54.3
Q ss_pred EEEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcccc
Q 042234 23 LCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATL 89 (658)
Q Consensus 23 ~~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 89 (658)
+..|.| .|+|.+|++.+++.|+..+|+.++++++..+.+.+... ..+.++++.++.+|-++.+
T Consensus 8 ~~efaV-~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts---~p~s~i~~~le~tGr~Avl 70 (247)
T KOG4656|consen 8 EAEFAV-QMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETS---VPPSEIQNTLENTGRDAVL 70 (247)
T ss_pred eEEEEE-echhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEcc---CChHHHHHHHHhhChheEE
Confidence 345666 58999999999999999999999999999999998843 5688999999999987643
No 45
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.0023 Score=59.15 Aligned_cols=59 Identities=17% Similarity=0.423 Sum_probs=52.6
Q ss_pred eeEEEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcC
Q 042234 97 SKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTG 159 (658)
Q Consensus 97 ~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g 159 (658)
-+.+|.| .|+|.+|+..+.+.|+.++||.+++++.....+.|. .......|.+.|++.|
T Consensus 7 ~~~efaV-~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~---ts~p~s~i~~~le~tG 65 (247)
T KOG4656|consen 7 YEAEFAV-QMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVE---TSVPPSEIQNTLENTG 65 (247)
T ss_pred eeEEEEE-echhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEE---ccCChHHHHHHHHhhC
Confidence 4556666 499999999999999999999999999999999998 5566889999999999
No 46
>PLN02957 copper, zinc superoxide dismutase
Probab=96.94 E-value=0.0042 Score=61.57 Aligned_cols=68 Identities=31% Similarity=0.496 Sum_probs=58.7
Q ss_pred eEEEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcccccccC
Q 042234 22 QLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLISTG 93 (658)
Q Consensus 22 ~~~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~ 93 (658)
+++.+.+ +|+|.+|+..+++.+++.+|+.++.+++..+++.+.++ ...+++.+.+++.||.+.+....
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~~~ 73 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIGQG 73 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEecCC
Confidence 4566888 79999999999999999999999999999999999873 35788899999999998666543
No 47
>PLN02957 copper, zinc superoxide dismutase
Probab=96.85 E-value=0.0047 Score=61.23 Aligned_cols=66 Identities=21% Similarity=0.342 Sum_probs=57.2
Q ss_pred eeEEEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcCCCCcceeecC
Q 042234 97 SKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTGSGRFKARIFP 169 (658)
Q Consensus 97 ~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g~~~~~~~~~~ 169 (658)
+++.+.+ +|+|..|+..+++.+.+++||..+.+|+..+++.|.|+ ...+++.+.+++.| |.+.+..
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~G---y~a~~~~ 71 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTG---RKARLIG 71 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcC---CcEEEec
Confidence 5677888 79999999999999999999999999999999999983 46788899999999 6665543
No 48
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.0035 Score=49.67 Aligned_cols=53 Identities=23% Similarity=0.433 Sum_probs=48.4
Q ss_pred ecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcC
Q 042234 104 DGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTG 159 (658)
Q Consensus 104 ~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g 159 (658)
-.|+|..|+..|++.+..++||.++.++...+.++|.=+ .++..+.+.+.+.|
T Consensus 11 v~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 11 VNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred ECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 479999999999999999999999999999999999843 78899999998865
No 49
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.67 E-value=0.0031 Score=74.61 Aligned_cols=63 Identities=21% Similarity=0.451 Sum_probs=53.0
Q ss_pred eeEEEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcCCCCcceee
Q 042234 97 SKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTGSGRFKARI 167 (658)
Q Consensus 97 ~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g~~~~~~~~ 167 (658)
.++++.++||+|++|+.+|++++++++||.++.+|+. +.+++++ .+.+.+.+.+++.| |++..
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~---~~~~~i~~~i~~~G---y~~~~ 65 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT---ASAEALIETIKQAG---YDASV 65 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec---CCHHHHHHHHHhcC---Ccccc
Confidence 4678999999999999999999999999999999995 4455542 46789999999999 55543
No 50
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.011 Score=46.68 Aligned_cols=55 Identities=24% Similarity=0.478 Sum_probs=49.0
Q ss_pred EecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcC
Q 042234 27 GINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTG 84 (658)
Q Consensus 27 ~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 84 (658)
..-.|+|.+|...+++.++.++||.++..+...+++++.-+ .++..+.+.+.+.|
T Consensus 9 ~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 9 LKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred EEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 34479999999999999999999999999999999999855 56889999998866
No 51
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.77 E-value=0.03 Score=65.17 Aligned_cols=66 Identities=32% Similarity=0.557 Sum_probs=56.6
Q ss_pred ceEEEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCccc
Q 042234 21 TQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEAT 88 (658)
Q Consensus 21 ~~~~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 88 (658)
..+..+.++||+|++|.+.+++.+.+.+|+.++.+++.+++..+.+++.. . +++.+.+.++||.+.
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~Gy~a~ 117 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAGFSLR 117 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhcccccc
Confidence 34677999999999999999999999999999999999999988887652 3 667777888999864
No 52
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=2.6 Score=46.55 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=32.9
Q ss_pred CCCCceeeEEeeCCCCCCCCEEEEeCCCeeeecEEEEecc
Q 042234 342 EDGNVISEEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQ 381 (658)
Q Consensus 342 ~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~g~ 381 (658)
|||. ..++|..-|+.||||-+++|+.-||.+.=++++
T Consensus 162 RDGh---lm~lP~~LLVeGDiIa~RPGQeafan~~g~~dd 198 (1354)
T KOG4383|consen 162 RDGH---LMELPRILLVEGDIIAFRPGQEAFANCEGFDDD 198 (1354)
T ss_pred ccCe---eeecceeEEEeccEEEecCCccccccccccCCC
Confidence 3887 789999999999999999999999998877764
No 53
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=91.44 E-value=1.7 Score=35.01 Aligned_cols=65 Identities=34% Similarity=0.587 Sum_probs=48.6
Q ss_pred EEEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcc
Q 042234 23 LCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEA 87 (658)
Q Consensus 23 ~~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 87 (658)
+..+.+.++.|..|...++..+...+++.....+.......+.++........+.......||..
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPS 88 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCe
Confidence 34577999999999999999999999988888888777766665443234555555556677764
No 54
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=88.71 E-value=0.62 Score=43.36 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=42.2
Q ss_pred chhHHHHHhhhhcCCCceEEeecCCcc-------------------EEEEEeCCCCCChhhHHHHHHhc
Q 042234 109 DHSMRMIENSLQALPGVHGIGVDSGVH-------------------KIAISYKPDMTGPRNFMKVIEST 158 (658)
Q Consensus 109 ~~c~~~ie~~l~~~~GV~~v~v~~~~~-------------------~~~V~~d~~~~~~~~i~~~i~~~ 158 (658)
+.|=|-+|..+.++|||.++.+=.+.+ .|.|.|||..++.+++++..=+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~ 78 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQI 78 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 568999999999999999999855543 48999999999999998865444
No 55
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=87.89 E-value=3.4 Score=33.23 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=48.3
Q ss_pred eEEEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcC
Q 042234 98 KIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTG 159 (658)
Q Consensus 98 ~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g 159 (658)
+..+.+.++.|..|...++..+...+++....++...+...+.+++...+...+...+...|
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 85 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAG 85 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcC
Confidence 44567899999999999999999999999999999888888887665444555545555555
No 56
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=86.00 E-value=1.3 Score=40.46 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=41.6
Q ss_pred chhHHHHHhhhhcCCCceEEeecCCc--------------cEEEEEeCCCCCChhhHHHHHHhc
Q 042234 109 DHSMRMIENSLQALPGVHGIGVDSGV--------------HKIAISYKPDMTGPRNFMKVIEST 158 (658)
Q Consensus 109 ~~c~~~ie~~l~~~~GV~~v~v~~~~--------------~~~~V~~d~~~~~~~~i~~~i~~~ 158 (658)
+.|=|-+|..+++++||.++++=.+. +.|.|.|||..++.+++++..=+.
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~~ 71 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFEI 71 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHHh
Confidence 56899999999999999999984443 348999999999999998866444
No 57
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=85.03 E-value=1.4 Score=40.49 Aligned_cols=50 Identities=14% Similarity=0.285 Sum_probs=42.5
Q ss_pred chhHHHHHhhhhcCCCceEEeecCCc-------------------cEEEEEeCCCCCChhhHHHHHHhc
Q 042234 109 DHSMRMIENSLQALPGVHGIGVDSGV-------------------HKIAISYKPDMTGPRNFMKVIEST 158 (658)
Q Consensus 109 ~~c~~~ie~~l~~~~GV~~v~v~~~~-------------------~~~~V~~d~~~~~~~~i~~~i~~~ 158 (658)
+.|=|-+|+.+.++|||.++.+=.+. +.|.|.|||..++.+++++..=++
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~i 81 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEI 81 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHhee
Confidence 56889999999999999999985543 358999999999999999877554
No 58
>PRK13748 putative mercuric reductase; Provisional
Probab=84.57 E-value=3.8 Score=46.41 Aligned_cols=59 Identities=19% Similarity=0.401 Sum_probs=48.9
Q ss_pred EEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcC
Q 042234 100 HLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTG 159 (658)
Q Consensus 100 ~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g 159 (658)
.+.+.+++|..|...++..+...+++....++...+...+.+++. .+.+.+...++..|
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~~~i~~~i~~~g 61 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLG 61 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCHHHHHHHHHHcC
Confidence 356789999999999999999999999999999999988888753 45566666667777
No 59
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=84.41 E-value=1.5 Score=42.11 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=42.5
Q ss_pred chhHHHHHhhhhcCCCceEEeecCCc-------------------cEEEEEeCCCCCChhhHHHHHHhc
Q 042234 109 DHSMRMIENSLQALPGVHGIGVDSGV-------------------HKIAISYKPDMTGPRNFMKVIEST 158 (658)
Q Consensus 109 ~~c~~~ie~~l~~~~GV~~v~v~~~~-------------------~~~~V~~d~~~~~~~~i~~~i~~~ 158 (658)
+.|=|-+|..+++++||.++.+=++. +.|.|+|||..++.+++++..=+.
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~~ 120 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWEN 120 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHHh
Confidence 56899999999999999999996652 358999999999999998866544
No 60
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=83.56 E-value=1.3 Score=41.60 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=41.9
Q ss_pred chhHHHHHhhhhcCCCceEEeecCCcc-------------------EEEEEeCCCCCChhhHHHHHHhc
Q 042234 109 DHSMRMIENSLQALPGVHGIGVDSGVH-------------------KIAISYKPDMTGPRNFMKVIEST 158 (658)
Q Consensus 109 ~~c~~~ie~~l~~~~GV~~v~v~~~~~-------------------~~~V~~d~~~~~~~~i~~~i~~~ 158 (658)
+.|=|-+|..+.+++||.++++=.+.+ .|.|.|||..++.+++++..=+.
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~~ 83 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFST 83 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHHh
Confidence 468888999999999999999955543 48999999999999998866544
No 61
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=82.77 E-value=2.3 Score=38.61 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=41.6
Q ss_pred chhHHHHHhhhhcCCCceEEeecCC-------------------ccEEEEEeCCCCCChhhHHHHHHhc
Q 042234 109 DHSMRMIENSLQALPGVHGIGVDSG-------------------VHKIAISYKPDMTGPRNFMKVIEST 158 (658)
Q Consensus 109 ~~c~~~ie~~l~~~~GV~~v~v~~~-------------------~~~~~V~~d~~~~~~~~i~~~i~~~ 158 (658)
+.|=|-+|..+.+++||.++++=++ .+.|.|.|||..++.+++++..=+.
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~~ 75 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWEI 75 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHHh
Confidence 4688999999999999999998433 2458999999999999999865444
No 62
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=82.48 E-value=6.9 Score=30.30 Aligned_cols=58 Identities=24% Similarity=0.388 Sum_probs=42.3
Q ss_pred EEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCccccccc
Q 042234 25 RIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLIST 92 (658)
Q Consensus 25 ~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 92 (658)
++.+.|+.|+.....+.+++++++.- ..+.+..+.. .+...+...++..||.......
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~-~~~~di~~~~~~~g~~~~~~~~ 59 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDP-AAVEDIPRWCEENGYEVVEVEE 59 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESST-THHHHHHHHHHHHTEEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCc-cHHHHHHHHHHHCCCEEEEEEE
Confidence 47788999999999999999987432 3455555544 4578899999999998544433
No 63
>PRK13748 putative mercuric reductase; Provisional
Probab=80.40 E-value=6.3 Score=44.60 Aligned_cols=66 Identities=32% Similarity=0.606 Sum_probs=52.3
Q ss_pred EEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCccccccc
Q 042234 26 IGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLIST 92 (658)
Q Consensus 26 ~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 92 (658)
+.+.+|+|++|...++..+...+++.....++..+...+.+++. .....+...+.++||...+...
T Consensus 4 i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~~~i~~~i~~~g~~~~~~~~ 69 (561)
T PRK13748 4 LKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLGYRATLADA 69 (561)
T ss_pred EEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCHHHHHHHHHHcCCeeeccCc
Confidence 56899999999999999999999998889998888877776542 4556666667788887655544
No 64
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=79.39 E-value=3.3 Score=37.94 Aligned_cols=50 Identities=18% Similarity=0.340 Sum_probs=41.4
Q ss_pred chhHHHHHhhhhcCCCceEEeecCCc-------------------cEEEEEeCCCCCChhhHHHHHHhc
Q 042234 109 DHSMRMIENSLQALPGVHGIGVDSGV-------------------HKIAISYKPDMTGPRNFMKVIEST 158 (658)
Q Consensus 109 ~~c~~~ie~~l~~~~GV~~v~v~~~~-------------------~~~~V~~d~~~~~~~~i~~~i~~~ 158 (658)
+.|=|-.|..+.+++||.++++=+.. +.|.|.|||..++.+++++..-+.
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~ 75 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRI 75 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHh
Confidence 46899999999999999999995543 358999999999999998866554
No 65
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=73.81 E-value=4.6 Score=39.15 Aligned_cols=90 Identities=17% Similarity=0.303 Sum_probs=55.7
Q ss_pred CCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCccccccc------------CCcceeEEEeeecCccchhHHHH
Q 042234 48 PGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLIST------------GEDMSKIHLQVDGIRTDHSMRMI 115 (658)
Q Consensus 48 ~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~------------~~~~~~~~~~v~gm~c~~c~~~i 115 (658)
.|+......-.++...+..++. +..+-.+-+...||+.+.... +...++.|+. .+-...+
T Consensus 43 ~gI~A~K~~~~~g~~~l~Ve~~--~fa~Av~iL~~~GlPr~~f~~l~d~Fp~dgLVsSP~eEkaR~~------~~~eQ~l 114 (246)
T COG4669 43 HGINAEKKADKDGGTSLLVEES--DFAEAVEILNQNGLPRKKFTTLGDIFPKDGLVSSPTEEKARLN------YAKEQQL 114 (246)
T ss_pred cCCcceeeccCCCceEEEEcHH--HHHHHHHHHHhcCCCCCCCCcHHHhCCcccccCCcHHHHHHHH------HHHHHHH
Confidence 4666555555666666665443 345566677888998654321 1111222221 2336789
Q ss_pred HhhhhcCCCceEEeecCC--------------ccEEEEEeCCCC
Q 042234 116 ENSLQALPGVHGIGVDSG--------------VHKIAISYKPDM 145 (658)
Q Consensus 116 e~~l~~~~GV~~v~v~~~--------------~~~~~V~~d~~~ 145 (658)
|+.|+.++||.+++|+.. +.++.|.|.|+.
T Consensus 115 e~tLs~mDGVi~ArV~I~lp~~~~~g~~~~P~saSVfIky~~~~ 158 (246)
T COG4669 115 EQTLSKMDGVISARVHISLPEDDDEGKNALPSSASVFIKYSPDV 158 (246)
T ss_pred HHHHHhcCceEEEEEEEEcCCCCccCCCCCCceeEEEEEecCCC
Confidence 999999999988877433 457999998773
No 66
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=73.51 E-value=23 Score=23.36 Aligned_cols=41 Identities=49% Similarity=0.912 Sum_probs=31.9
Q ss_pred EecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeC
Q 042234 27 GINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYD 67 (658)
Q Consensus 27 ~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~ 67 (658)
.+.++.|..|...++..+...+++.....++......+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYD 43 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEEC
Confidence 35788899999999988888888777777776666555554
No 67
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=71.15 E-value=5.6 Score=40.13 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=41.8
Q ss_pred chhHHHHHhhhhcCCCceEEeecCCc-------------------cEEEEEeCCCCCChhhHHHHHHhc
Q 042234 109 DHSMRMIENSLQALPGVHGIGVDSGV-------------------HKIAISYKPDMTGPRNFMKVIEST 158 (658)
Q Consensus 109 ~~c~~~ie~~l~~~~GV~~v~v~~~~-------------------~~~~V~~d~~~~~~~~i~~~i~~~ 158 (658)
+.|=|-+|..+.+++||.++++=++. +.|.|+|||..++.+++++..=+.
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~~~ 202 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFFEI 202 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHhh
Confidence 57899999999999999999984443 358999999999999998766443
No 68
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=70.65 E-value=24 Score=23.34 Aligned_cols=42 Identities=33% Similarity=0.644 Sum_probs=34.8
Q ss_pred eecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCC
Q 042234 103 VDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPD 144 (658)
Q Consensus 103 v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~ 144 (658)
+.++.|..|...++..+...+++.....+.......+.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPE 45 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCC
Confidence 567889999999999999999988888888877777777654
No 69
>PRK11018 hypothetical protein; Provisional
Probab=67.40 E-value=37 Score=27.00 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=43.2
Q ss_pred EEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCccccc
Q 042234 24 CRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLI 90 (658)
Q Consensus 24 ~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 90 (658)
..+...|..|+.-....++++++++. .+.+.+..+.. .+...+...++..||.....
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~-~a~~di~~~~~~~G~~v~~~ 65 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCP-QSINNIPLDARNHGYTVLDI 65 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCc-cHHHHHHHHHHHcCCEEEEE
Confidence 56889999999999999999998752 23345555544 45778888999999987543
No 70
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=65.31 E-value=95 Score=38.20 Aligned_cols=67 Identities=9% Similarity=-0.023 Sum_probs=42.3
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeecCCCCceeeEEeeCCCCCC-CCEEEEeCCC
Q 042234 291 EGTDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLTLDEDGNVISEEEIDSRLIQR-NDVIKIIPGA 369 (658)
Q Consensus 291 ~~~~y~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r~~~~g~~~~~~~i~~~~l~~-GDii~v~~ge 369 (658)
.+...+.+...+++++.+....+.+..++..+.-+ . . +.+ ...+ ++. |....++..|
T Consensus 46 s~~~~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~--------~---~----n~~---~~~v----~~~~~~~~~i~~~~ 103 (1057)
T TIGR01652 46 SPTYRGTSIVPLAFVLIVTAIKEAIEDIRRRRRDK--------E---V----NNR---LTEV----LEGHGQFVEIPWKD 103 (1057)
T ss_pred CCCCccHhHHhHHHHHHHHHHHHHHHHHHHHHhHH--------H---H----hCc---EEEE----ECCCCcEEEeeeec
Confidence 45666766666666777887777777766655411 1 1 121 1111 343 6778888888
Q ss_pred eeeecEEEEe
Q 042234 370 KVASDGYVLW 379 (658)
Q Consensus 370 ~iPaD~~vl~ 379 (658)
..|-|.+.++
T Consensus 104 l~~GDiv~l~ 113 (1057)
T TIGR01652 104 LRVGDIVKVK 113 (1057)
T ss_pred ccCCCEEEEc
Confidence 8888888886
No 71
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.26 E-value=32 Score=27.92 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=47.7
Q ss_pred ceeEEEeeecCccchhHHHHHhhhhcCCCceEEee-----cCCccEEEEEeCCCCCChhhHHHHHHhcC
Q 042234 96 MSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGV-----DSGVHKIAISYKPDMTGPRNFMKVIESTG 159 (658)
Q Consensus 96 ~~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v-----~~~~~~~~V~~d~~~~~~~~i~~~i~~~g 159 (658)
.+|+.+.+---+-.-..-.+-+.|.+++||+.+++ +-.+.-+.|+.....++-+++.+.|++.|
T Consensus 5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~G 73 (97)
T COG1888 5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELG 73 (97)
T ss_pred ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcC
Confidence 45666666544444445556678889999988876 44566677888788899999999999998
No 72
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=62.01 E-value=16 Score=34.02 Aligned_cols=50 Identities=24% Similarity=0.488 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHhCCCCceEEEeeccCCe-------------------EEEEeCCCCCCHHHHHHHHHhc
Q 042234 34 TTCSTTVEKALQAIPGVQNVRVALATEA-------------------AEVHYDPKILNYNQILAAIEDT 83 (658)
Q Consensus 34 ~~C~~~ve~~l~~~~gv~~~~v~~~~~~-------------------~~v~~~~~~~~~~~i~~~i~~~ 83 (658)
++|-|.+|....+++||.++.+-.+.+. +.|.+|+..++.+++.+..-..
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~ 78 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQI 78 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 6799999999999999999998766654 7799999999999988876443
No 73
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=60.21 E-value=48 Score=25.58 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=41.4
Q ss_pred EEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcccccc
Q 042234 26 IGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLIS 91 (658)
Q Consensus 26 ~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 91 (658)
+.+.|+.|+.=.....+++++++. .+.+.+..+.. .+.+.+...++..||......
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~-~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDP-GFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCc-cHHHHHHHHHHHcCCEEEEEE
Confidence 456799999999999999998752 23345555544 467889999999999875433
No 74
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=59.95 E-value=17 Score=33.40 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=41.7
Q ss_pred chhHHHHHhhhhcCCCceEEeecCCc-------------------cEEEEEeCCCCCChhhHHHHHHhc
Q 042234 109 DHSMRMIENSLQALPGVHGIGVDSGV-------------------HKIAISYKPDMTGPRNFMKVIEST 158 (658)
Q Consensus 109 ~~c~~~ie~~l~~~~GV~~v~v~~~~-------------------~~~~V~~d~~~~~~~~i~~~i~~~ 158 (658)
..|-|.+|.+...+|||..-+|-++. +.+.|+|||..++-+++++..=+.
T Consensus 31 ~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw~~ 99 (191)
T KOG1635|consen 31 AGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFWSR 99 (191)
T ss_pred ccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHHHc
Confidence 46899999999999999999886553 358899999999999988766444
No 75
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=57.67 E-value=41 Score=27.79 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=46.9
Q ss_pred ceeEEEeeecCccchhHHHHHhhhhcCCCceEEee-----cCCccEEEEEeCCCCCChhhHHHHHHhcC
Q 042234 96 MSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGV-----DSGVHKIAISYKPDMTGPRNFMKVIESTG 159 (658)
Q Consensus 96 ~~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v-----~~~~~~~~V~~d~~~~~~~~i~~~i~~~g 159 (658)
.+|+.+.+--.+-+ ..-.+-+.|.+++||..+++ +-.+..+.|+.....++.+++.++|++.|
T Consensus 4 irRlVLDVlKP~~p-~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~G 71 (95)
T PF02680_consen 4 IRRLVLDVLKPHEP-SIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELG 71 (95)
T ss_dssp EEEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT
T ss_pred eeEEEEEeecCCCC-CHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcC
Confidence 46677776544333 34566788999999998876 55677888888888899999999999998
No 76
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=56.53 E-value=53 Score=25.33 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=41.2
Q ss_pred EEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcccccc
Q 042234 26 IGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLIS 91 (658)
Q Consensus 26 ~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 91 (658)
+...|..|+.=....++++++++. ...+.+..+.+ .+...+...++..||......
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~---------G~~l~V~~d~~-~s~~ni~~~~~~~g~~v~~~~ 57 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKP---------GEILEVISDCP-QSINNIPIDARNHGYKVLAIE 57 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEecCc-hHHHHHHHHHHHcCCEEEEEE
Confidence 456799999999999999998752 23345555544 567888899999999875433
No 77
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=55.47 E-value=60 Score=25.01 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=41.3
Q ss_pred EEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcccccc
Q 042234 26 IGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLIS 91 (658)
Q Consensus 26 ~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 91 (658)
+...|..|+.=.-..++++++++- .+...+..+.+ .+.+.+...++..||......
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~~---------G~~l~V~~dd~-~s~~di~~~~~~~g~~~~~~~ 57 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMKP---------GDTLLVLATDP-STTRDIPKFCTFLGHELLAQE 57 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCC-chHHHHHHHHHHcCCEEEEEE
Confidence 456789999999999999998742 23345555544 467889999999999875433
No 78
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=54.74 E-value=2.1e+02 Score=35.04 Aligned_cols=9 Identities=33% Similarity=0.833 Sum_probs=6.9
Q ss_pred hhhcCCCCC
Q 042234 643 MLDNNIDIP 651 (658)
Q Consensus 643 ~~~~~i~~~ 651 (658)
++++||++|
T Consensus 1069 F~~~GIeIP 1077 (1109)
T PRK10929 1069 FREHGIDMP 1077 (1109)
T ss_pred HHHCCCcCC
Confidence 468898876
No 79
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=54.25 E-value=94 Score=24.88 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=42.7
Q ss_pred EEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCccccc
Q 042234 24 CRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLI 90 (658)
Q Consensus 24 ~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 90 (658)
..+...|..|+.=....++++++++. .+...+..+.+ ...+.+..-.+..|+.....
T Consensus 10 ~~lD~~Gl~CP~Pll~~kk~l~~l~~---------G~~l~V~~dd~-~~~~di~~~~~~~G~~~~~~ 66 (81)
T PRK00299 10 HTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDP-ATTRDIPSFCRFMDHELLAQ 66 (81)
T ss_pred eEEecCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEeCCc-cHHHHHHHHHHHcCCEEEEE
Confidence 46889999999999999999998742 23344554443 46778888889999987543
No 80
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=53.97 E-value=77 Score=38.47 Aligned_cols=133 Identities=13% Similarity=0.245 Sum_probs=82.6
Q ss_pred EEEEecCCCCh----hhHHHHHHHHhCCCCceEEEeeccCC--eEEEEeCCCCCCHH----HHHHHHHhcC--Ccccccc
Q 042234 24 CRIGINGMTCT----TCSTTVEKALQAIPGVQNVRVALATE--AAEVHYDPKILNYN----QILAAIEDTG--FEATLIS 91 (658)
Q Consensus 24 ~~~~i~gm~C~----~C~~~ve~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~----~i~~~i~~~G--y~~~~~~ 91 (658)
+.-.-+|.+-. .-...+|++++.++|+.+++..-..+ .++++++.+ ++++ ++.+.+.+.. .+.....
T Consensus 46 V~t~ypGAsae~ve~~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~-~d~d~A~~~V~~kv~~~~~~LP~~~~~ 124 (1009)
T COG0841 46 VSATYPGASAETVEDSVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELG-TDPDTAAVQVQNKIQQAESRLPSGVQQ 124 (1009)
T ss_pred EEEecCCCCHHHHHHHHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCC-CChHHHHHHHHHHHHHHHhcCCCccCC
Confidence 33444555532 34567889999999998777654334 556667665 4454 5666666543 2211000
Q ss_pred c------CCcceeEEEeeec--Ccc----chhHHHHHhhhhcCCCceEEeecCC-ccEEEEEeCCCCC-----ChhhHHH
Q 042234 92 T------GEDMSKIHLQVDG--IRT----DHSMRMIENSLQALPGVHGIGVDSG-VHKIAISYKPDMT-----GPRNFMK 153 (658)
Q Consensus 92 ~------~~~~~~~~~~v~g--m~c----~~c~~~ie~~l~~~~GV~~v~v~~~-~~~~~V~~d~~~~-----~~~~i~~ 153 (658)
+ .....-..+.+.+ +.- ..-...++..|+++|||.++.+.=. ...+.|..||.+. ++.++.+
T Consensus 125 p~v~~~~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ 204 (1009)
T COG0841 125 PGVTVEKSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQS 204 (1009)
T ss_pred CceEeccCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHH
Confidence 0 0111223333433 321 1124568899999999999999877 6679999999855 6788999
Q ss_pred HHHh
Q 042234 154 VIES 157 (658)
Q Consensus 154 ~i~~ 157 (658)
+|++
T Consensus 205 ai~~ 208 (1009)
T COG0841 205 AIRA 208 (1009)
T ss_pred HHHH
Confidence 9875
No 81
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=53.63 E-value=2.5e+02 Score=34.45 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=35.3
Q ss_pred hHHHHHHHHhCCCCceEEEeec-cCCeEEEEeCCCC-----CCHHHHHHHHHhcCCc
Q 042234 36 CSTTVEKALQAIPGVQNVRVAL-ATEAAEVHYDPKI-----LNYNQILAAIEDTGFE 86 (658)
Q Consensus 36 C~~~ve~~l~~~~gv~~~~v~~-~~~~~~v~~~~~~-----~~~~~i~~~i~~~Gy~ 86 (658)
..+.+++.|+++|||..+++.= ....+.+..|+.+ .+..++.+.+......
T Consensus 157 ~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~v~~~l~~~n~~ 213 (1021)
T PF00873_consen 157 AEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSDVAQALQANNVN 213 (1021)
T ss_dssp HHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHHHHHHHHHHSCE
T ss_pred HHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHHHHHHHHHhhhh
Confidence 4567889999999999999863 4556777777753 6778888888766553
No 82
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.28 E-value=1.1e+02 Score=23.59 Aligned_cols=59 Identities=12% Similarity=0.234 Sum_probs=38.7
Q ss_pred CHHHHHHHHHhcCCcccccccCC---cceeEEEeeecCccchhHHHHHhhhhcCCCceEEee
Q 042234 72 NYNQILAAIEDTGFEATLISTGE---DMSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGV 130 (658)
Q Consensus 72 ~~~~i~~~i~~~Gy~~~~~~~~~---~~~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v 130 (658)
-..++...+.+.|.......... ...++.|.++--.-......+-+.|+++|||.++++
T Consensus 13 ~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 13 VLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 46778888888888765544321 223455555432222366788999999999998864
No 83
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=52.11 E-value=2.8e+02 Score=28.44 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=24.5
Q ss_pred EEEEecCCCChhhHHHHHHHHhCCCCceEEEee
Q 042234 24 CRIGINGMTCTTCSTTVEKALQAIPGVQNVRVA 56 (658)
Q Consensus 24 ~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~ 56 (658)
++..++.-....|...+++.+++.|||.++++-
T Consensus 61 i~vyL~~~~~~~~~~~v~~~i~~~~gV~~v~~~ 93 (297)
T COG2177 61 ITVYLQIDADQDDAALVREKIEGIPGVKSVRFI 93 (297)
T ss_pred EEEEEecCCChHHHHHHHHHHhcCCCcceEEEe
Confidence 334444334488999999999999999877754
No 84
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=52.09 E-value=67 Score=24.45 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=37.7
Q ss_pred EEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcccc
Q 042234 26 IGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATL 89 (658)
Q Consensus 26 ~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 89 (658)
+.+.|+.|+.-.....+++ ++.. .+.+.+..+.. .+.+.+...++..||....
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~-~s~~~i~~~~~~~G~~~~~ 54 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNE-VAKENVSRFAESRGYEVSV 54 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcCh-hHHHHHHHHHHHcCCEEEE
Confidence 4567999999999999999 5432 22344444433 4567888999999998843
No 85
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=50.07 E-value=23 Score=39.37 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=41.9
Q ss_pred chhHHHHHhhhhcCCCceEEeecCCc------------------cEEEEEeCCCCCChhhHHHHHHhc
Q 042234 109 DHSMRMIENSLQALPGVHGIGVDSGV------------------HKIAISYKPDMTGPRNFMKVIEST 158 (658)
Q Consensus 109 ~~c~~~ie~~l~~~~GV~~v~v~~~~------------------~~~~V~~d~~~~~~~~i~~~i~~~ 158 (658)
+.|=|-+|..+++++||.++++=++. +.|.|+|||..++.+++++..=+.
T Consensus 205 gGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f~~~ 272 (521)
T PRK14018 205 GGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYYFRV 272 (521)
T ss_pred cCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHHHHh
Confidence 57899999999999999999984443 348999999999999998866544
No 86
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=49.59 E-value=40 Score=30.90 Aligned_cols=49 Identities=18% Similarity=0.470 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHhCCCCceEEEeeccCC--------------eEEEEeCCCCCCHHHHHHHHHh
Q 042234 34 TTCSTTVEKALQAIPGVQNVRVALATE--------------AAEVHYDPKILNYNQILAAIED 82 (658)
Q Consensus 34 ~~C~~~ve~~l~~~~gv~~~~v~~~~~--------------~~~v~~~~~~~~~~~i~~~i~~ 82 (658)
++|-|.+|....+++||.++.+-.+.+ .+.|.||+..++.+++.+..-.
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~ 70 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFE 70 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHH
Confidence 679999999999999999998865442 2678899999999998887644
No 87
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=49.10 E-value=5.9e+02 Score=31.29 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=41.6
Q ss_pred EEEEEecCCCCh---hhHHHHHHHHhCCCCceEEEeeccCC--eEEEEeCCC-----CCCHHHHHHHHHhc
Q 042234 23 LCRIGINGMTCT---TCSTTVEKALQAIPGVQNVRVALATE--AAEVHYDPK-----ILNYNQILAAIEDT 83 (658)
Q Consensus 23 ~~~~~i~gm~C~---~C~~~ve~~l~~~~gv~~~~v~~~~~--~~~v~~~~~-----~~~~~~i~~~i~~~ 83 (658)
.+.+.+.|-+=. .-+..+++.+++.||+.++..+...+ ...+..|+. ..+++++.+.++..
T Consensus 660 ~i~i~l~G~d~~~L~~~a~~i~~~L~~~pgv~~v~~~~~~~~~el~i~id~~ka~~~Gls~~~v~~~l~~~ 730 (1025)
T PRK10614 660 SYQYTLLSDDLAALREWEPKIRKALAALPELADVNSDQQDKGAEMALTYDRDTMARLGIDVQAANSLLNNA 730 (1025)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 466777765422 24577888999999999999887665 444555443 25667777777654
No 88
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=49.05 E-value=3.7e+02 Score=32.95 Aligned_cols=199 Identities=12% Similarity=0.031 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCCeEEEEee--cCCCCceeeEEeeCCCCCCCCEEEEeCCCeeeec
Q 042234 302 LISFILLGKYLEVLAKGKTSEAIAKLMDL-----APETATLLTL--DEDGNVISEEEIDSRLIQRNDVIKIIPGAKVASD 374 (658)
Q Consensus 302 ll~~~~~~~~l~~~~~~k~~~~~~~l~~~-----~~~~~~v~r~--~~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD 374 (658)
++++..+-.+++.+..+++.+.++++... ...+...+.. -.-|. ...+..-+..|.|.+.++... +-+|
T Consensus 113 vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~lv~GD---iv~l~~Gd~IPaD~~il~~~~-l~Vd 188 (997)
T TIGR01106 113 VVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGD---LVEVKGGDRIPADLRIISAQG-CKVD 188 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHCCCCC---EEEECCCCEEeeeEEEEEccC-cEEE
Confidence 44455555566667777787778877431 1111111110 01355 677888889999999887653 4456
Q ss_pred EEEEecce-eeecccccCCCcce----eecCCCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHH-hhcCChhHHH
Q 042234 375 GYVLWGQS-HVNESMITGEARPV----AKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESA-QMAKAPVQKF 448 (658)
Q Consensus 375 ~~vl~g~~-~vdes~LtGEs~pv----~k~~g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~-~~~~~~~~~~ 448 (658)
=-.|.|++ .+.-..-.-+..|. .--.|..+..|+...-=...+.=+..|.-. ++.+..+.. ..-...+++.
T Consensus 189 eS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~---~~~~~~~~~~~pl~~~~~~~ 265 (997)
T TIGR01106 189 NSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIA---SLASGLENGKTPIAIEIEHF 265 (997)
T ss_pred ccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHH---hhhhhcccCCCcHHHHHHHH
Confidence 66666775 22211100011111 123567777776322111122222333221 111111111 1111234566
Q ss_pred HHhHhhhhhHHHHHHHHHHHHH-HHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchHHHHHHHH
Q 042234 449 ADRISKYFVPLVIILSFSTWLA-WFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVG 522 (658)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~ 522 (658)
.+.+..+.+.+.+++.++.++. +.+.. .+..++...++..-.+.|.+++++...+....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~m 325 (997)
T TIGR01106 266 IHIITGVAVFLGVSFFILSLILGYTWLE---------------AVIFLIGIIVANVPEGLLATVTVCLTLTAKRM 325 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHH---------------HHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 6666665555444444433322 11111 22334444555566677888877777765543
No 89
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=48.21 E-value=1.4e+02 Score=36.56 Aligned_cols=132 Identities=14% Similarity=0.238 Sum_probs=78.8
Q ss_pred EEEecCCCChh----hHHHHHHHHhCCCCceEEEeecc-C--CeEEEEeCCCCCCH----HHHHHHHHhc--CCccc---
Q 042234 25 RIGINGMTCTT----CSTTVEKALQAIPGVQNVRVALA-T--EAAEVHYDPKILNY----NQILAAIEDT--GFEAT--- 88 (658)
Q Consensus 25 ~~~i~gm~C~~----C~~~ve~~l~~~~gv~~~~v~~~-~--~~~~v~~~~~~~~~----~~i~~~i~~~--Gy~~~--- 88 (658)
...-+|.+-.. -...+|++++.++|+.+++..-. . ..+.+.++... +. .++.+.+... ..+..
T Consensus 46 ~t~ypGasp~~vE~~Vt~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~v~~ 124 (1037)
T PRK10555 46 TANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGT-DPDEAVQQVQNQLQSAMRKLPQAVQN 124 (1037)
T ss_pred EEecCCCCHHHHHHHHhHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECCC-CHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 33445654333 34678889999999999987432 3 44667776653 43 3455555433 22211
Q ss_pred --ccccC-CcceeEEEeee---c-Ccc----chhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCC-----ChhhHH
Q 042234 89 --LISTG-EDMSKIHLQVD---G-IRT----DHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMT-----GPRNFM 152 (658)
Q Consensus 89 --~~~~~-~~~~~~~~~v~---g-m~c----~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~-----~~~~i~ 152 (658)
+...+ ....-..+.+. + +.- ..-++.++..|+++|||.++.++-....+.|..||.+. +..++.
T Consensus 125 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~ 204 (1037)
T PRK10555 125 QGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVT 204 (1037)
T ss_pred CCceEeCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHH
Confidence 11111 11112233332 2 221 11246788999999999999998766779999999744 678888
Q ss_pred HHHHh
Q 042234 153 KVIES 157 (658)
Q Consensus 153 ~~i~~ 157 (658)
++|++
T Consensus 205 ~al~~ 209 (1037)
T PRK10555 205 DAIES 209 (1037)
T ss_pred HHHHH
Confidence 88874
No 90
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=46.94 E-value=1e+02 Score=23.32 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=40.0
Q ss_pred EEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCccccc
Q 042234 26 IGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLI 90 (658)
Q Consensus 26 ~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 90 (658)
+...|+.|+.=.....+++++++. .....+..+.. .+...+...++..||.....
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~~---------g~~l~v~~d~~-~~~~~i~~~~~~~g~~~~~~ 56 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLKS---------GEVLEVLLDDP-GAVEDIPAWAKETGHEVLEV 56 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCCC---------CCEEEEEecCC-cHHHHHHHHHHHcCCEEEEE
Confidence 456789999999999999988642 23345555544 46788999999999986433
No 91
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=46.63 E-value=29 Score=27.63 Aligned_cols=51 Identities=6% Similarity=0.061 Sum_probs=31.2
Q ss_pred chhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcC
Q 042234 109 DHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTG 159 (658)
Q Consensus 109 ~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g 159 (658)
+.-+..++=.|...++|-++-+|.=.....|.|||...+.+++++.++...
T Consensus 10 ~eeA~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~k 60 (88)
T PF11491_consen 10 PEEAMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFK 60 (88)
T ss_dssp TTTTHHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTT
T ss_pred HHHHHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcC
Confidence 445667777899999999999999999999999999999999999999886
No 92
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=46.50 E-value=11 Score=30.28 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=16.5
Q ss_pred eeCCCCCCCCEEEE-eCCCeeee
Q 042234 352 IDSRLIQRNDVIKI-IPGAKVAS 373 (658)
Q Consensus 352 i~~~~l~~GDii~v-~~ge~iPa 373 (658)
+.-.+|.+||.|.| ++||.||-
T Consensus 45 i~~~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 45 IKELDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp HHHTT-BBT-EEEEEEETTTEEE
T ss_pred HHHcCCCCCCEEEEEECCCccce
Confidence 44678999999998 57999995
No 93
>PF15584 Imm44: Immunity protein 44
Probab=46.07 E-value=9.9 Score=30.94 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=15.7
Q ss_pred CCCEEEEeCCCeeeecEEE
Q 042234 359 RNDVIKIIPGAKVASDGYV 377 (658)
Q Consensus 359 ~GDii~v~~ge~iPaD~~v 377 (658)
+.+-.+|+.|++|||||+-
T Consensus 13 ~~~~~~I~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEEecCCCcccCCeE
Confidence 3455678999999999986
No 94
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=44.73 E-value=2.9e+02 Score=33.55 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=75.4
Q ss_pred eEEeeCCCCCCCCEEEEeCCCeeeecEEEEeccee-eecccccCCCcceeecCCCeeeeeceecC----------ceEEE
Q 042234 349 EEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQSH-VNESMITGEARPVAKRKGYTVIGGTVNEN----------GVLHI 417 (658)
Q Consensus 349 ~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~g~~~-vdes~LtGEs~pv~k~~g~~v~~Gt~~~~----------g~~~~ 417 (658)
...+...|.+|.|.+.++. +..-+|=-.|.|++. ++-. .|+.. ..-.|..+..|+...- |++.-
T Consensus 189 iV~l~~Gd~IPaD~~li~g-~~l~VdES~LTGES~pv~K~--~~~~n--~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~ 263 (941)
T TIGR01517 189 IVSLSTGDVVPADGVFISG-LSLEIDESSITGESDPIKKG--APKDS--FLLSGTVVNEGSGRMLVTAVGVNSFGGKLMM 263 (941)
T ss_pred EEEECCCCEecccEEEEEc-CcEEEEecccCCCCCccccc--CCCCc--eEEeCCeEEeeEEEEEEEEeCCCcHHHHHHH
Confidence 6778888999999998864 444566666667662 2211 12211 1345666666653211 11111
Q ss_pred EEEEecCCcHHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccC--CCCCCcCCCchhhHHHH
Q 042234 418 KATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFH--SYPESWIPSSMDSFQLA 495 (658)
Q Consensus 418 ~v~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 495 (658)
.+......|.+. ..+++..+.+..+.+.+.++..++.++.|++..... ..+..+..+....+..+
T Consensus 264 ~~~~~~~~t~l~-------------~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 330 (941)
T TIGR01517 264 ELRAEGEDTPLQ-------------EKLSELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIA 330 (941)
T ss_pred hhccCCCCCcHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHH
Confidence 111111222221 223444444544444333333333322222211000 00000011112356667
Q ss_pred HHHHhheeeeeccccccchHHHHHHHHHH
Q 042234 496 LQFGISVMVIACPCALGLATPTAVMVGTG 524 (658)
Q Consensus 496 ~~~~~~vli~~~P~~l~l~~~~~~~~~~~ 524 (658)
+..+++..-.+.|.++++++..+.....+
T Consensus 331 l~llv~~iP~~Lp~~vti~l~~~~~~mak 359 (941)
T TIGR01517 331 VTIVVVAVPEGLPLAVTIALAYSMKKMMK 359 (941)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHHHHHHh
Confidence 77777777778888888888888765554
No 95
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=43.95 E-value=36 Score=32.15 Aligned_cols=49 Identities=29% Similarity=0.495 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHhCCCCceEEEeeccCCe-------------------EEEEeCCCCCCHHHHHHHHHh
Q 042234 34 TTCSTTVEKALQAIPGVQNVRVALATEA-------------------AEVHYDPKILNYNQILAAIED 82 (658)
Q Consensus 34 ~~C~~~ve~~l~~~~gv~~~~v~~~~~~-------------------~~v~~~~~~~~~~~i~~~i~~ 82 (658)
++|-|.+|....+++||.++.+-.+.+. +.|.||+..++.+++.+..-.
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~ 82 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFS 82 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHH
Confidence 5788899999999999999998765553 779999999999998887644
No 96
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=43.84 E-value=1.6e+02 Score=23.37 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=39.7
Q ss_pred EEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcC-Cccc
Q 042234 24 CRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTG-FEAT 88 (658)
Q Consensus 24 ~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G-y~~~ 88 (658)
..+.+.|+.|+.=...+.+++++++ ......|..+.+ .+..++...+...| |...
T Consensus 6 ~~LD~rG~~CP~Pv~~~kk~l~~m~---------~Ge~LeV~~ddp-~~~~dIp~~~~~~~~~~ll 61 (78)
T COG0425 6 KVLDLRGLRCPGPVVETKKALAKLK---------PGEILEVIADDP-AAKEDIPAWAKKEGGHELL 61 (78)
T ss_pred eEEeccCCcCCccHHHHHHHHHcCC---------CCCEEEEEecCc-chHHHHHHHHHHcCCcEEE
Confidence 4689999999999999999999885 234455555544 34577777777455 6543
No 97
>PF10173 Mit_KHE1: Mitochondrial K+-H+ exchange-related; InterPro: IPR018786 This entry represents a family of proteins conserved from plants to humans. Their function is not known.
Probab=42.25 E-value=83 Score=29.85 Aligned_cols=43 Identities=16% Similarity=0.392 Sum_probs=25.3
Q ss_pred HhhhhcCCCceEE-ee-cCC----ccEEEEEeCCCCCChhhHHHHHHhc
Q 042234 116 ENSLQALPGVHGI-GV-DSG----VHKIAISYKPDMTGPRNFMKVIEST 158 (658)
Q Consensus 116 e~~l~~~~GV~~v-~v-~~~----~~~~~V~~d~~~~~~~~i~~~i~~~ 158 (658)
|..|+++|..... +. +.. .+.+.|-|-++..+.+.+.+.++..
T Consensus 78 E~~LKsiP~~~~~~~~~~~~~~~~~~~i~v~yP~~~~~~~~v~~~L~~l 126 (187)
T PF10173_consen 78 EWALKSIPSLSHLRRRINEEHESQKKPIEVYYPGSVISPREVLRQLRKL 126 (187)
T ss_pred HHHHhcCCCcccccchhhhhccccccceeEecCcccCCHHHHHHHHHHH
Confidence 5566676665441 11 111 1267777765777777777777655
No 98
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=41.43 E-value=97 Score=25.94 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=20.8
Q ss_pred CCCceeeEEeeCCCCCCCCEEEEeCCCee
Q 042234 343 DGNVISEEEIDSRLIQRNDVIKIIPGAKV 371 (658)
Q Consensus 343 ~g~~~~~~~i~~~~l~~GDii~v~~ge~i 371 (658)
||+ .--++.++++||+|.|.-|...
T Consensus 39 NG~----~aKpS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 39 NGQ----RAKPSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred CCE----EcccccccCCCCEEEEEeCCcE
Confidence 775 3478999999999999988764
No 99
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=41.07 E-value=48 Score=32.05 Aligned_cols=49 Identities=29% Similarity=0.519 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHhCCCCceEEEeeccCC-------------------eEEEEeCCCCCCHHHHHHHHHh
Q 042234 34 TTCSTTVEKALQAIPGVQNVRVALATE-------------------AAEVHYDPKILNYNQILAAIED 82 (658)
Q Consensus 34 ~~C~~~ve~~l~~~~gv~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~ 82 (658)
++|-|.+|....+++||.++.+-.+.+ .+.|.||+...+.+++.+..-+
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~ 119 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWE 119 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHH
Confidence 679999999999999999999977633 3778999998999998887643
No 100
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=40.69 E-value=13 Score=34.92 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=12.8
Q ss_pred EEecCCCcccCCce
Q 042234 548 IVFDKTGTLTVGKP 561 (658)
Q Consensus 548 i~~DKTGTLT~~~~ 561 (658)
+|||.+||||.+.+
T Consensus 1 v~fD~DGTL~~~~~ 14 (192)
T PF12710_consen 1 VIFDFDGTLTDSDS 14 (192)
T ss_dssp EEEESBTTTBSSHH
T ss_pred eEEecCcCeecCCC
Confidence 68999999999993
No 101
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=40.53 E-value=4.2e+02 Score=31.89 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEE-----------EEeec--CCCCceeeEEeeCCCCCCCCEEEEe
Q 042234 300 SMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETAT-----------LLTLD--EDGNVISEEEIDSRLIQRNDVIKII 366 (658)
Q Consensus 300 ~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~-----------v~r~~--~~g~~~~~~~i~~~~l~~GDii~v~ 366 (658)
+++++...++.+.|.+++ |+.+.++++....+.-.+ .+... .-|. ...+..-|.+|-|.+.++
T Consensus 96 ~iv~~~~~i~~~~e~~a~-ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GD---iV~l~~Gd~VPaDg~li~ 171 (867)
T TIGR01524 96 LMVLASGLLGFIQESRAE-RAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGD---LIELAAGDIIPADARVIS 171 (867)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCC---EEEECCCCEEcccEEEEe
Confidence 445556677888887775 777778888653332222 11100 1355 567788888888988876
Q ss_pred CCCeeeecEEEEecce
Q 042234 367 PGAKVASDGYVLWGQS 382 (658)
Q Consensus 367 ~ge~iPaD~~vl~g~~ 382 (658)
|+-+-+|=-.+-|++
T Consensus 172 -g~~l~VDES~LTGES 186 (867)
T TIGR01524 172 -ARDLFINQSALTGES 186 (867)
T ss_pred -cCceEEEcccccCCC
Confidence 444556766777776
No 102
>PF12084 DUF3561: Protein of unknown function (DUF3561); InterPro: IPR022721 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=37.91 E-value=1.1e+02 Score=25.78 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=27.5
Q ss_pred HhhhhhcCHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHH
Q 042234 237 TPVQFIIGRRFYTGSYKALRHGSANLDVLISLGTNAAYFYSMYSVL 282 (658)
Q Consensus 237 ~~v~~~~g~~~~~~a~~~l~~~~~~~d~l~~~~~~~a~~~s~~~~~ 282 (658)
.|+.+..| -++..+.+++.-.+++.+..+..++++-+++++
T Consensus 65 mPvsVl~G-----i~l~~ll~g~l~~s~~~t~l~V~~lFwllF~~L 105 (107)
T PF12084_consen 65 MPVSVLIG-----IALSSLLRGKLLWSLLATGLAVGCLFWLLFSWL 105 (107)
T ss_pred HHHHHHHH-----HHHHHHcCCcEeeehhhHHHHHHHHHHHHHHHH
Confidence 46555443 366778888887777777777777777666554
No 103
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=37.38 E-value=88 Score=28.67 Aligned_cols=50 Identities=34% Similarity=0.591 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHhCCCCceEEEeeccCC-------------------eEEEEeCCCCCCHHHHHHHHHhc
Q 042234 34 TTCSTTVEKALQAIPGVQNVRVALATE-------------------AAEVHYDPKILNYNQILAAIEDT 83 (658)
Q Consensus 34 ~~C~~~ve~~l~~~~gv~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 83 (658)
++|-|.+|....+++||.+..+-.+.+ .+.|.+|+...+.+++.+..-..
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~ 75 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRI 75 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHh
Confidence 579999999999999999999976555 35677888878777777766433
No 104
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=37.05 E-value=81 Score=24.14 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=37.4
Q ss_pred EEeeecCccchhHHHHHhhhhcCC-CceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcC
Q 042234 100 HLQVDGIRTDHSMRMIENSLQALP-GVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTG 159 (658)
Q Consensus 100 ~~~v~gm~c~~c~~~ie~~l~~~~-GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g 159 (658)
.+.++|+.|+...-.+.+++++++ | ..+.|..|.. ...+++.+.++..|
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G----------~~l~v~~d~~-~~~~di~~~~~~~g 51 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG----------EVLEVLVDDP-AAVEDIPRWCEENG 51 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT-----------EEEEEESST-THHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC----------CEEEEEECCc-cHHHHHHHHHHHCC
Confidence 467899999999999999999873 4 3455665544 45688999999999
No 105
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=36.04 E-value=80 Score=28.72 Aligned_cols=49 Identities=35% Similarity=0.576 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHhCCCCceEEEeeccCC-------------------eEEEEeCCCCCCHHHHHHHHHh
Q 042234 34 TTCSTTVEKALQAIPGVQNVRVALATE-------------------AAEVHYDPKILNYNQILAAIED 82 (658)
Q Consensus 34 ~~C~~~ve~~l~~~~gv~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~ 82 (658)
++|-|.+|....+++||.++.+-.+.+ .+.|.+|+..++.+++.+..-+
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~ 74 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWE 74 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHH
Confidence 579999999999999999988864433 3567888888888888876543
No 106
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.52 E-value=2.5e+02 Score=23.02 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=47.8
Q ss_pred EEEEEecCCCChhhHHHHHHHHhCCCCceEEEee-----ccCCeEEEEeCCCCCCHHHHHHHHHhcCCcccc
Q 042234 23 LCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVA-----LATEAAEVHYDPKILNYNQILAAIEDTGFEATL 89 (658)
Q Consensus 23 ~~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~-----~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 89 (658)
+..+.+--.+...-.-.+-+.+++++||..++.. ..+....++......+-+++.+.+++.|-..+.
T Consensus 7 RlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHS 78 (97)
T COG1888 7 RLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHS 78 (97)
T ss_pred eeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeee
Confidence 4445555445445555667788999998877664 455666677777778899999999999987653
No 107
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=34.87 E-value=5e+02 Score=31.91 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=42.9
Q ss_pred eEEEEEecCCCC---hhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCC-------CCHHHHHHHHHhc
Q 042234 22 QLCRIGINGMTC---TTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKI-------LNYNQILAAIEDT 83 (658)
Q Consensus 22 ~~~~~~i~gm~C---~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~-------~~~~~i~~~i~~~ 83 (658)
..+++.+.|-+= ..-+.++++.+++.||+.++..+.......+..+... .+.+++...+..+
T Consensus 671 ~~i~v~i~G~d~~~L~~~a~~v~~~l~~~pgv~dv~~~~~~~~~el~i~~dreka~~~Gls~~~va~~l~~a 742 (1021)
T PF00873_consen 671 APIQVEIYGDDLEELRKAAEKVKAKLAEIPGVTDVRDDWEDGQPELRIDPDREKAARLGLSPADVARTLRTA 742 (1021)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHHHHHHSTTEEEEEESSSSBEEEEEEEE-HHHHHHTTB-HHHHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHHHHHHHHhCCCcccccccccccCcceEEEecHHHHHHcCCCHHHHHHHHHHH
Confidence 356666788663 3356778888999999999999998888776665432 4556666666543
No 108
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=34.59 E-value=3.9e+02 Score=27.59 Aligned_cols=90 Identities=13% Similarity=0.261 Sum_probs=50.4
Q ss_pred EEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHh-cCCcc--cccccCCcceeEE
Q 042234 24 CRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIED-TGFEA--TLISTGEDMSKIH 100 (658)
Q Consensus 24 ~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~-~Gy~~--~~~~~~~~~~~~~ 100 (658)
+.+..+.-.-..-...+++.+++.|||.+++.- +.++..+.+++ .|.+. .....+.-+..+.
T Consensus 68 i~vyl~~~~~~~~~~~l~~~L~~~~~V~~v~~v---------------skeeal~~l~~~~g~~~~l~~l~~nPLP~si~ 132 (309)
T PRK11026 68 LTVYLDKTLDDDAANAVVEQLKAEDGVEKVNYL---------------SREEALGEFRNWSGFGGALDMLEENPLPAVAI 132 (309)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCcceEEEE---------------CHHHHHHHHHHhhCchHHHhhCcCCCCCCeEE
Confidence 445554433455566888999999999766632 33444444432 23321 1111111223344
Q ss_pred Eeee-cCccchhHHHHHhhhhcCCCceEE
Q 042234 101 LQVD-GIRTDHSMRMIENSLQALPGVHGI 128 (658)
Q Consensus 101 ~~v~-gm~c~~c~~~ie~~l~~~~GV~~v 128 (658)
+..+ +...+.-...+.+.+++.|||.++
T Consensus 133 V~~~~~~~~~~~~~~i~~~l~~~~~V~~v 161 (309)
T PRK11026 133 IIPKLDFQSSEKLNTLRDRLAQIKGVDEV 161 (309)
T ss_pred EEecCCCCCHHHHHHHHHHHhcCCCCcee
Confidence 4443 444566678888888888888765
No 109
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=34.46 E-value=7.9e+02 Score=28.53 Aligned_cols=32 Identities=19% Similarity=0.036 Sum_probs=20.9
Q ss_pred eEEeeCCCCCCCCEEEEeCCCeeeecEEEEecce
Q 042234 349 EEEIDSRLIQRNDVIKIIPGAKVASDGYVLWGQS 382 (658)
Q Consensus 349 ~~~i~~~~l~~GDii~v~~ge~iPaD~~vl~g~~ 382 (658)
...+..-|..|.|-..++. +- -+|==.+-|++
T Consensus 128 iV~v~~Gd~IPaDG~vieG-~~-~VDESaLTGES 159 (673)
T PRK14010 128 IVRVATGEQIPNDGKVIKG-LA-TVDESAITGES 159 (673)
T ss_pred EEEECCCCcccCCeEEEEc-ce-EEecchhcCCC
Confidence 5677777788888777653 32 55655566665
No 110
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=33.18 E-value=84 Score=29.20 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHhCCCCceEEEeeccCC-------------------eEEEEeCCCCCCHHHHHHHHHhc
Q 042234 34 TTCSTTVEKALQAIPGVQNVRVALATE-------------------AAEVHYDPKILNYNQILAAIEDT 83 (658)
Q Consensus 34 ~~C~~~ve~~l~~~~gv~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 83 (658)
.+|-|-+|+...++|||.++.+-.+.+ .+.|.+|+...+.+++.+..-+.
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~i 81 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEI 81 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHhee
Confidence 578899999999999999988864443 35688999989888888877544
No 111
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=33.09 E-value=1.3e+02 Score=23.87 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=37.0
Q ss_pred ccCCCceeee-ccccccCcceEEEEEecCCCChhhHHHHHHHHhCCCCceEEEe
Q 042234 3 EDVGFQATLI-QDETSDKSTQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRV 55 (658)
Q Consensus 3 ~~~g~~~~~~-~~~~~~~~~~~~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v 55 (658)
+.-||.++.+ ...+.+.+..++.+.+. ...+...+.+.|+++.+|..+++
T Consensus 25 ~rRGfnI~sl~v~~t~~~~~sriti~v~---~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 25 RHRGFQVCSMNMTQNTDAQNINIELTVA---SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred hcCCeeeeeEEeeecCCCCEEEEEEEEC---CCchHHHHHHHHhcCcCeEEEEE
Confidence 4568888755 23334556677878884 48889999999999999988765
No 112
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=32.75 E-value=81 Score=30.36 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=36.0
Q ss_pred hHHHHHhhhhc--CCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcC
Q 042234 111 SMRMIENSLQA--LPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTG 159 (658)
Q Consensus 111 c~~~ie~~l~~--~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g 159 (658)
.+..+.+.|++ .+||.++.... .++.|.|||..++.+++.+.|++..
T Consensus 26 ~v~al~~~l~~~~~~gi~e~vp~~--~sllV~fdp~~~~~~~l~~~l~~~~ 74 (202)
T PF02682_consen 26 RVLALARALRAAPLPGIVEVVPAY--RSLLVHFDPLRIDRAALRAALEELL 74 (202)
T ss_dssp HHHHHHHHHHHHT-TTEEEEEEES--SEEEEEESTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEEeeccc--cEEEEEEcCCcCCHHHHHHHHHHhh
Confidence 45667777776 88887665544 6899999999999999998888763
No 113
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=32.30 E-value=3.4e+02 Score=33.45 Aligned_cols=133 Identities=11% Similarity=0.160 Sum_probs=77.2
Q ss_pred EEEEecCCCChh----hHHHHHHHHhCCCCceEEEeecc-C--CeEEEEeCCCCCC----HHHHHHHHHhc--CCccc--
Q 042234 24 CRIGINGMTCTT----CSTTVEKALQAIPGVQNVRVALA-T--EAAEVHYDPKILN----YNQILAAIEDT--GFEAT-- 88 (658)
Q Consensus 24 ~~~~i~gm~C~~----C~~~ve~~l~~~~gv~~~~v~~~-~--~~~~v~~~~~~~~----~~~i~~~i~~~--Gy~~~-- 88 (658)
+...-+|.+-.. -...+|+.++.++|+.+++..-. . ....+.++.+. + ..++.+.+... .++..
T Consensus 45 V~~~~pGas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~~-d~~~a~~~v~~~l~~~~~~LP~~~~ 123 (1044)
T TIGR00915 45 VSASYPGASAQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQGT-DPDIAQVQVQNKLQLATPLLPQEVQ 123 (1044)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCccc
Confidence 334445554322 23566778899999998886432 3 34556665542 3 24455555532 22211
Q ss_pred ---ccccC-CcceeEEEeeec---Cccc----h-hHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCC-----ChhhH
Q 042234 89 ---LISTG-EDMSKIHLQVDG---IRTD----H-SMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMT-----GPRNF 151 (658)
Q Consensus 89 ---~~~~~-~~~~~~~~~v~g---m~c~----~-c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~-----~~~~i 151 (658)
+.... ....-..+.+.+ .... . -.+.++..|+++|||.++++.-....+.|..||.+. +..++
T Consensus 124 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~dV 203 (1044)
T TIGR00915 124 RQGVRVEKASSNFLMVIGLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPADV 203 (1044)
T ss_pred CCCcEEeCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHHHH
Confidence 00000 111122233322 1111 1 235689999999999999998886779999999854 67888
Q ss_pred HHHHHh
Q 042234 152 MKVIES 157 (658)
Q Consensus 152 ~~~i~~ 157 (658)
.+.|++
T Consensus 204 ~~~i~~ 209 (1044)
T TIGR00915 204 ISAIQA 209 (1044)
T ss_pred HHHHHH
Confidence 888886
No 114
>PRK10726 hypothetical protein; Provisional
Probab=31.70 E-value=2e+02 Score=24.12 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=19.8
Q ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHHHHHHH
Q 042234 251 SYKALRHGSANLDVLISLGTNAAYFYSMYSVL 282 (658)
Q Consensus 251 a~~~l~~~~~~~d~l~~~~~~~a~~~s~~~~~ 282 (658)
++..+.+++.-..++.......++++-+++++
T Consensus 71 ~l~~Ll~g~l~~s~l~t~l~V~~lFwllF~~L 102 (105)
T PRK10726 71 ALHSLLRGKLLYSILFTLLTVGCLFWLLFSWL 102 (105)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777766656666655666666555544
No 115
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=30.52 E-value=5.3e+02 Score=25.72 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=28.0
Q ss_pred HHHHHhhhhcCCCceEEeecCC-------------ccEEEEEeCCC
Q 042234 112 MRMIENSLQALPGVHGIGVDSG-------------VHKIAISYKPD 144 (658)
Q Consensus 112 ~~~ie~~l~~~~GV~~v~v~~~-------------~~~~~V~~d~~ 144 (658)
...+++.+..++||.+++|+.. +.++.|++.|.
T Consensus 109 egELarTI~~idgV~~ArVhL~lP~~~~~~~~~~asASV~I~~~~~ 154 (249)
T PRK15348 109 EQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQ 154 (249)
T ss_pred HHHHHHHHHhCCCeeEeEEEEECCCCCcccCCCCccEEEEEEeCCC
Confidence 4678999999999999999654 56799999886
No 116
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=30.04 E-value=5.5e+02 Score=31.10 Aligned_cols=207 Identities=15% Similarity=0.118 Sum_probs=112.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCeEEEEee-cCCCCceeeEEeeCCCCCCCCEEEEeCC
Q 042234 296 FETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLA------PETATLLTL-DEDGNVISEEEIDSRLIQRNDVIKIIPG 368 (658)
Q Consensus 296 ~~~~~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~------~~~~~v~r~-~~~g~~~~~~~i~~~~l~~GDii~v~~g 368 (658)
+...+++++..+++ +.+.+...++.++++++.... .+...+--. -.=|. ...+...|.+|-|...++..
T Consensus 107 ~~I~~~i~~n~~~g-~~qe~~a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpGD---iV~l~~gd~vPAD~rLl~~~ 182 (917)
T COG0474 107 IVILLVVVINALLG-FVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASELVPGD---IVLLEAGDVVPADLRLLESS 182 (917)
T ss_pred eeehHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCceEEEeCCcEEEecHHHCCCCc---EEEECCCCccccceEEEEec
Confidence 33344454555555 677777777777888876622 222222110 01254 67888999999999999988
Q ss_pred CeeeecEEEEecce-eeeccc--ccCC------CcceeecCCCeeeeeceecCceEEEEEEEecCCcHHHHHHHHHHHHh
Q 042234 369 AKVASDGYVLWGQS-HVNESM--ITGE------ARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQ 439 (658)
Q Consensus 369 e~iPaD~~vl~g~~-~vdes~--LtGE------s~pv~k~~g~~v~~Gt~~~~g~~~~~v~~~g~~T~~~~i~~~~~~~~ 439 (658)
+ .-+|=-.|.|++ .++=.. .+.| ...-.--.|..+..|.-..--..++.-+..|+.+......+. ...
T Consensus 183 ~-l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~--~~t 259 (917)
T COG0474 183 D-LEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKE--VKT 259 (917)
T ss_pred C-ceEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccc--cCC
Confidence 7 566666677775 111111 1111 112233567788887733222334444444544433333210 111
Q ss_pred hcCChhHHHHHhHhhhhhHHHHHHHHHHHHH----HHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeeeccccccchH
Q 042234 440 MAKAPVQKFADRISKYFVPLVIILSFSTWLA----WFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLAT 515 (658)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~~P~~l~l~~ 515 (658)
.-...+.+....+..+.+.+.++..+..+.. |.- .+..++..+++++-.+.|..+.++.
T Consensus 260 ~l~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~l~va~IPegLp~~vti~l 322 (917)
T COG0474 260 PLQRKLNKLGKFLLVLALVLGALVFVVGLFRGGNGLLE-----------------SFLTALALAVAAVPEGLPAVVTIAL 322 (917)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH-----------------HHHHHHHHHHhccccchHHHHHHHH
Confidence 1112344555555544444444444443332 221 3556677778888888888888888
Q ss_pred HHHHHHHHHHH
Q 042234 516 PTAVMVGTGVG 526 (658)
Q Consensus 516 ~~~~~~~~~~~ 526 (658)
.++...-.++-
T Consensus 323 a~g~~~mak~~ 333 (917)
T COG0474 323 ALGAQRMAKDN 333 (917)
T ss_pred HHHHHHHHhcc
Confidence 88776655443
No 117
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.94 E-value=1.5e+02 Score=22.66 Aligned_cols=54 Identities=20% Similarity=0.195 Sum_probs=32.5
Q ss_pred cccCCCceeeeccccccCcceEEEEEecCCCChhhHHHHHHHHhCCCCceEEEe
Q 042234 2 IEDVGFQATLIQDETSDKSTQLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRV 55 (658)
Q Consensus 2 i~~~g~~~~~~~~~~~~~~~~~~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v 55 (658)
+.+.|-++..+.......+...+.+.++--.=..-...+.+.|+++|||.++.+
T Consensus 21 la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 21 IAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred HHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 345566665553322222334455666542233377888889999999998764
No 118
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=28.40 E-value=4.9e+02 Score=32.08 Aligned_cols=120 Identities=10% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCceEEEeecc---CCeEEEEeCCCCCC---HHHHHHHHHhc--------CCcccccccCCcceeEEEee
Q 042234 38 TTVEKALQAIPGVQNVRVALA---TEAAEVHYDPKILN---YNQILAAIEDT--------GFEATLISTGEDMSKIHLQV 103 (658)
Q Consensus 38 ~~ve~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~---~~~i~~~i~~~--------Gy~~~~~~~~~~~~~~~~~v 103 (658)
..+|+.++.++|+.+++..-. ...+.+.++..... ..++.+.+... .-..-.........-..+.+
T Consensus 63 ~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g~d~~~a~~~V~~~i~~~~~~LP~~~~~~~~~~~~~~~~~v~~~~l 142 (1049)
T PRK15127 63 QVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGV 142 (1049)
T ss_pred HHHHHHhcCCCCceEEEEEecCCceEEEEEEEECCCChHHHHHHHHHHHHHHHhhCCCcccCCCcEEecCCCCceEEEEE
Q ss_pred ec--------CccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCC-----CCChhhHHHHHHh
Q 042234 104 DG--------IRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPD-----MTGPRNFMKVIES 157 (658)
Q Consensus 104 ~g--------m~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~-----~~~~~~i~~~i~~ 157 (658)
.+ --+.--.+.++..|+++|||.++++.-....+.|..||. .++..++.+++++
T Consensus 143 ~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~V~~~l~~ 209 (1049)
T PRK15127 143 INTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVINAIKA 209 (1049)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHHHHHHHHH
No 119
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=28.32 E-value=5.1e+02 Score=26.75 Aligned_cols=91 Identities=15% Similarity=0.263 Sum_probs=48.9
Q ss_pred EEEEEecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHh-cCCcc--cccccCCcceeE
Q 042234 23 LCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIED-TGFEA--TLISTGEDMSKI 99 (658)
Q Consensus 23 ~~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~-~Gy~~--~~~~~~~~~~~~ 99 (658)
++++..+.-.-+.-...+++.+++.|||.+++.- ++++..+.+++ .|.+. ....++.-+..+
T Consensus 67 ~i~vyl~~~~~~~~~~~l~~~l~~~~~V~~v~~i---------------skeeAl~~l~~~~g~~~~l~~l~~nPLP~si 131 (309)
T TIGR00439 67 QITVYLEKALAQSDADTVVSLLTRDKGVENINYI---------------SREDGLAEFQSWSGFGNLLSMLDGNPLPAVF 131 (309)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCCCccEEEEE---------------CHHHHHHHHHHhcCCchhhhhcccCCCCCeE
Confidence 3555555544555667888999999999766632 34455555443 34321 111111112333
Q ss_pred EEeee-cCccchhHHHHHhhhhcCCCceEE
Q 042234 100 HLQVD-GIRTDHSMRMIENSLQALPGVHGI 128 (658)
Q Consensus 100 ~~~v~-gm~c~~c~~~ie~~l~~~~GV~~v 128 (658)
.+..+ +..-..-...+++.+++.|||.++
T Consensus 132 ~V~l~~~~~~~~~~~~l~~~l~~~~gV~~v 161 (309)
T TIGR00439 132 IVTPDPAFTPAEMQAILRDNITKIPGVEEV 161 (309)
T ss_pred EEEeCCCCChHHHHHHHHHHHhcCCCCCcc
Confidence 33332 212223346677888888888655
No 120
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=27.96 E-value=4e+02 Score=26.10 Aligned_cols=93 Identities=8% Similarity=0.083 Sum_probs=51.6
Q ss_pred HHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCC--HHHHHHHHHhcCCcccccccC----CcceeEEEeeecC-ccch
Q 042234 38 TTVEKALQAIPGVQNVRVALATEAAEVHYDPKILN--YNQILAAIEDTGFEATLISTG----EDMSKIHLQVDGI-RTDH 110 (658)
Q Consensus 38 ~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~--~~~i~~~i~~~Gy~~~~~~~~----~~~~~~~~~v~gm-~c~~ 110 (658)
..+++.+++.|.-.. .-..-.+.+..+++... .+.+.+.+++.+|..+..+.. ++..+++..+... ....
T Consensus 124 ~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~ 200 (225)
T PRK15385 124 REAAQRINQLPVSAE---GEKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRK 200 (225)
T ss_pred HHHHHHHhhcccccc---cceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchh
Confidence 445566655554211 10112334554443221 366778888889987665542 1222333333322 2345
Q ss_pred hHHHHHhhhhcCCCceEEeecCC
Q 042234 111 SMRMIENSLQALPGVHGIGVDSG 133 (658)
Q Consensus 111 c~~~ie~~l~~~~GV~~v~v~~~ 133 (658)
-...+-..|...|||.+++++..
T Consensus 201 ~le~iv~~L~~~pgV~~v~W~~~ 223 (225)
T PRK15385 201 TRELIISRIGDNDNITAIHWSID 223 (225)
T ss_pred hHHHHHHHHhCCCCeEEEEEEec
Confidence 56777788999999999998854
No 121
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=27.84 E-value=7.2e+02 Score=26.00 Aligned_cols=24 Identities=4% Similarity=0.119 Sum_probs=11.2
Q ss_pred HHHHHhhhhhcCHHHHHHHHHHHH
Q 042234 233 WVLSTPVQFIIGRRFYTGSYKALR 256 (658)
Q Consensus 233 ~~l~~~v~~~~g~~~~~~a~~~l~ 256 (658)
++++...+.+.-++.++.+.....
T Consensus 163 ~ii~~~~l~~~~~~l~~~~~~~~~ 186 (340)
T PF12794_consen 163 FIILLLLLAVFLWRLLRPGWGLYQ 186 (340)
T ss_pred HHHHHHHHHHHHHHHHcccccccc
Confidence 333333344444566665554443
No 122
>PRK09577 multidrug efflux protein; Reviewed
Probab=27.57 E-value=4.7e+02 Score=32.18 Aligned_cols=122 Identities=10% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCceEEEeeccCCeEEEEeCCCC-----CCHHHHHHHHHhc--------CCcccccccCCcceeEEEeee
Q 042234 38 TTVEKALQAIPGVQNVRVALATEAAEVHYDPKI-----LNYNQILAAIEDT--------GFEATLISTGEDMSKIHLQVD 104 (658)
Q Consensus 38 ~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~-----~~~~~i~~~i~~~--------Gy~~~~~~~~~~~~~~~~~v~ 104 (658)
..+|+.++.++|+.+++..-..+...+...-+. ....++.+.+... +...-.........-..+.+.
T Consensus 63 ~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g~d~~~a~~~V~~~v~~~~~~LP~~~~~~~~~~~~~~~~~~~~~~l~ 142 (1032)
T PRK09577 63 ALIEREMNGAPGLLYTSATSSAGQASLSLTFKQGVNADLAAVEVQNRLKTVEARLPEPVRRDGIQVEKAADNIQLIVSLT 142 (1032)
T ss_pred HHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCCChHHHHHHHHHHHHHHHHhCCcccccCCceEeccCCCceEEEEEE
Q ss_pred cCccchh--------HHHHHhhhhcCCCceEEeecCCccEEEEEeCCC-----CCChhhHHHHHHhcC
Q 042234 105 GIRTDHS--------MRMIENSLQALPGVHGIGVDSGVHKIAISYKPD-----MTGPRNFMKVIESTG 159 (658)
Q Consensus 105 gm~c~~c--------~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~-----~~~~~~i~~~i~~~g 159 (658)
+-.-... ...++..|+++|||.+++++-....+.|..||. .++..++.+.|++.+
T Consensus 143 ~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~~~n 210 (1032)
T PRK09577 143 SDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRAHN 210 (1032)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHhC
No 123
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=27.44 E-value=3.4e+02 Score=22.14 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcccccccCCcceeEEEeeecCccchhHHHHH
Q 042234 37 STTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLISTGEDMSKIHLQVDGIRTDHSMRMIE 116 (658)
Q Consensus 37 ~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~v~gm~c~~c~~~ie 116 (658)
...+.+.+.++||+.-...+-..++..++.+.. +.+++.+.+
T Consensus 19 ~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~--~~~~~~~~i------------------------------------ 60 (87)
T PRK10553 19 ISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAE--DSETLLQTI------------------------------------ 60 (87)
T ss_pred HHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeC--ChHHHHHHH------------------------------------
Q ss_pred hhhhcCCCceEEee
Q 042234 117 NSLQALPGVHGIGV 130 (658)
Q Consensus 117 ~~l~~~~GV~~v~v 130 (658)
+.++.+|||.++..
T Consensus 61 ~~I~~l~GVlsa~l 74 (87)
T PRK10553 61 ESVRNVEGVLAVSL 74 (87)
T ss_pred HHHHcCCCceEEEE
No 124
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=27.25 E-value=1.3e+03 Score=28.58 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCCceEEEeeccCCeEEEEeCCCC-----CCHHHHHHHHHhc
Q 042234 38 TTVEKALQAIPGVQNVRVALATEAAEVHYDPKI-----LNYNQILAAIEDT 83 (658)
Q Consensus 38 ~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~-----~~~~~i~~~i~~~ 83 (658)
+.++..|+++|||.++++.-....+.+..|+++ .++.++.+.+...
T Consensus 160 ~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~dV~~~i~~~ 210 (1044)
T TIGR00915 160 SNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPADVISAIQAQ 210 (1044)
T ss_pred HHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHHHHHHHHHHh
Confidence 568889999999999999766666778877753 6778888888764
No 125
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=26.49 E-value=1.9e+02 Score=27.54 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=43.3
Q ss_pred ecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcccccccCCcceeEE
Q 042234 28 INGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLISTGEDMSKIH 100 (658)
Q Consensus 28 i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~ 100 (658)
..|+.|+.-....++++++++. .+.+.+..+.+ .+.+.+...++..||.......++...++.
T Consensus 3 ~rGl~CP~Pvi~tKkal~~l~~---------g~~L~VlvD~~-~a~~nV~~~~~~~G~~v~~~e~~~~~~~i~ 65 (194)
T TIGR03527 3 ARGLACPQPVILTKKALDELGE---------EGVLTVIVDNE-AAKENVSKFATSLGYEVEVEEKEEGYWILI 65 (194)
T ss_pred CCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEECCc-cHHHHHHHHHHHcCCEEEEEEecCCEEEEE
Confidence 5689999999999999998752 22344554444 467788999999999885443333333333
No 126
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=25.88 E-value=1.2e+02 Score=30.80 Aligned_cols=49 Identities=27% Similarity=0.475 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHhCCCCceEEEeeccCC-------------------eEEEEeCCCCCCHHHHHHHHHh
Q 042234 34 TTCSTTVEKALQAIPGVQNVRVALATE-------------------AAEVHYDPKILNYNQILAAIED 82 (658)
Q Consensus 34 ~~C~~~ve~~l~~~~gv~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~ 82 (658)
++|-|.+|....+++||.++.+-.+.+ .+.|.||+..++.+++.+..-+
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~~ 201 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFFE 201 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHh
Confidence 689999999999999999998865443 3678899998888888876633
No 127
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=25.73 E-value=3.6e+02 Score=22.53 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEe
Q 042234 300 SMLISFILLGKYLEVLAKGKTSEAIAKLMDLAPETATLLT 339 (658)
Q Consensus 300 ~~ll~~~~~~~~l~~~~~~k~~~~~~~l~~~~~~~~~v~r 339 (658)
+++++++.+-.++-.+-.+|..++.+++.+.....-+|+.
T Consensus 13 l~~vl~~~ifyFli~RPQrKr~K~~~~ml~sL~kGD~VvT 52 (97)
T COG1862 13 LPLVLIFAIFYFLIIRPQRKRMKEHQELLNSLKKGDEVVT 52 (97)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhccCCCEEEE
Confidence 3333333333333333334444444555443333334444
No 128
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=25.62 E-value=1.2e+02 Score=23.42 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCcccccccCCcceeEEEeeecCccchh---H----HHHHhhhh-cCCCceEE
Q 042234 74 NQILAAIEDTGFEATLISTGEDMSKIHLQVDGIRTDHS---M----RMIENSLQ-ALPGVHGI 128 (658)
Q Consensus 74 ~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~v~gm~c~~c---~----~~ie~~l~-~~~GV~~v 128 (658)
+++...+...|-+.+...-++. +++++..| .|.+| . ..||+.|+ ..|.+..|
T Consensus 6 ~~IrP~L~~dGGdv~lv~v~~~--~V~V~l~G-aC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V 65 (68)
T PF01106_consen 6 EEIRPYLQSDGGDVELVDVDDG--VVYVRLTG-ACSGCPSSDMTLKQGIEQALREAVPEVKRV 65 (68)
T ss_dssp HHCHHHHHHTTEEEEEEEEETT--EEEEEEES-SCCSSCCHHHHHHHHHHHHHHHHSTT-SEE
T ss_pred HHhChHHHhcCCcEEEEEecCC--EEEEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCCCceE
Confidence 3466677777777766655444 66666666 45555 2 34566565 56666655
No 129
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=25.36 E-value=1.3e+02 Score=28.80 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=25.0
Q ss_pred HHHHHhhhhcCCCceEEeecCC--------------ccEEEEEeCCCC
Q 042234 112 MRMIENSLQALPGVHGIGVDSG--------------VHKIAISYKPDM 145 (658)
Q Consensus 112 ~~~ie~~l~~~~GV~~v~v~~~--------------~~~~~V~~d~~~ 145 (658)
...+++.+..++||++++|+.. +.++.+++.|+.
T Consensus 109 e~EL~rtI~~i~~V~~ArVhl~~P~~~~f~~~~~~~sASV~l~~~~g~ 156 (193)
T TIGR02544 109 EQRLEQTLSQIDGVISARVHVVLPENDNNGRPKKPSSASVFIKYRPGL 156 (193)
T ss_pred HHHHHHHHHhcCCeeeeEEEEECCCCCcccccCCCCcEEEEEEeCCCC
Confidence 4577889999999999988653 345666666654
No 130
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=25.33 E-value=1.2e+02 Score=29.31 Aligned_cols=110 Identities=12% Similarity=0.161 Sum_probs=53.7
Q ss_pred ecCCCChhhHHHHHHHHhCCCCceEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcccccccCCcceeEEEeeecCc
Q 042234 28 INGMTCTTCSTTVEKALQAIPGVQNVRVALATEAAEVHYDPKILNYNQILAAIEDTGFEATLISTGEDMSKIHLQVDGIR 107 (658)
Q Consensus 28 i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~v~gm~ 107 (658)
..|++ ..-+..|...|.+. |+.. +.+-......+..+.. ...+....+...|++.....+-+. .|.-.++.
T Consensus 32 ~~~l~-~~da~~i~~~L~~~-gI~y-~~~~~g~~~~I~Vp~~--~~~~ar~~La~~glp~~~~~g~~~----~~~~~~~~ 102 (206)
T PF01514_consen 32 YSGLD-EEDANEIVAALDEN-GIPY-KLSDDGGTWTILVPED--QVARARMLLASQGLPKSGFSGFEE----LFDNSSFG 102 (206)
T ss_dssp EEEE--HHHHHHHHHHHHHT-T--E-EEEE-TTSEEEEEEGG--GHHHHHHHHHHTT-S------CCH----HTTT-S--
T ss_pred ccCCC-HHHHHHHHHHHHHC-CCCc-EecCCCCeeEEEeCHH--HHHHHHHHHHHcCCCCCCCCCHHH----HhccCCCC
Confidence 34543 44578888888764 6643 3332333422322222 355666677777776432211000 00000111
Q ss_pred ----------cchhHHHHHhhhhcCCCceEEeecCC--------------ccEEEEEeCCCCC
Q 042234 108 ----------TDHSMRMIENSLQALPGVHGIGVDSG--------------VHKIAISYKPDMT 146 (658)
Q Consensus 108 ----------c~~c~~~ie~~l~~~~GV~~v~v~~~--------------~~~~~V~~d~~~~ 146 (658)
-.+=...+++.++.++||.+++|+.. +.++.+++.|+..
T Consensus 103 ~T~~~~~~~~~~ale~eL~~tI~~i~gV~~A~V~l~~Pe~~~f~~~~~~~sASV~l~~~~g~~ 165 (206)
T PF01514_consen 103 TTDFEEKVNYQRALEGELERTIESIDGVESARVHLVLPERSVFGENQQPPSASVVLKLKPGSE 165 (206)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEE----BTTB----EEEEEEEEE-TTS-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCeeEEEEEEecCCccccccCCCCCeEEEEEEECCCCC
Confidence 12234678999999999999999754 4457777766643
No 131
>PRK11281 hypothetical protein; Provisional
Probab=25.31 E-value=7.3e+02 Score=30.73 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=11.8
Q ss_pred cCCCcccCCceeEEEEEeccC
Q 042234 551 DKTGTLTVGKPVVVSTKLLKN 571 (658)
Q Consensus 551 DKTGTLT~~~~~v~~~~~~~~ 571 (658)
|-+||.++=.+....+...++
T Consensus 949 ~~~G~V~~I~lRsT~Irt~D~ 969 (1113)
T PRK11281 949 TFSGTVSKIRIRATTITDFDR 969 (1113)
T ss_pred CEEEEEEEEEeEEEEEEcCCC
Confidence 456666665555555555443
No 132
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.21 E-value=2.2e+02 Score=23.32 Aligned_cols=47 Identities=13% Similarity=0.321 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHhcCCcccccccCCcceeEEEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEe
Q 042234 71 LNYNQILAAIEDTGFEATLISTGEDMSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISY 141 (658)
Q Consensus 71 ~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~ 141 (658)
.+++.+.+.+..+|+.++.-.. ....+.||+..+++++.++++.|.-
T Consensus 12 ~~~dri~~~l~e~g~~v~~eGD------------------------~ivas~pgis~ieik~E~kkL~v~t 58 (96)
T COG4004 12 PDPDRIMRGLSELGWTVSEEGD------------------------RIVASSPGISRIEIKPENKKLLVNT 58 (96)
T ss_pred CCHHHHHHHHHHhCeeEeeccc------------------------EEEEecCCceEEEEecccceEEEec
Confidence 4688999999999987643211 1234679999999999999999873
No 133
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=25.19 E-value=8.1e+02 Score=25.72 Aligned_cols=129 Identities=11% Similarity=0.123 Sum_probs=82.1
Q ss_pred eEEEEEecCCCChhhHHHHHHHHhCCCCceEEEeecc--C----CeEEEEeCCCCCCHHHHHHHHHh-cCCcc--cccc-
Q 042234 22 QLCRIGINGMTCTTCSTTVEKALQAIPGVQNVRVALA--T----EAAEVHYDPKILNYNQILAAIED-TGFEA--TLIS- 91 (658)
Q Consensus 22 ~~~~~~i~gm~C~~C~~~ve~~l~~~~gv~~~~v~~~--~----~~~~v~~~~~~~~~~~i~~~i~~-~Gy~~--~~~~- 91 (658)
...++.|.++.-..-...+++.++..-.|.++.+-.. + +-+.|++.. .++...+++. .|... ..+.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~----~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGS----EADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEcc----HHHHHHHHHHcCCCccCCceeee
Confidence 3457899999888888899999998877888877432 2 347788754 3444444443 12211 1111
Q ss_pred ----cC-CcceeEEEeeecCccchhHHHHHhhhhcCCCceEEeecCCc------cEEEEEeCCCCCChhhHHHHHHhc
Q 042234 92 ----TG-EDMSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGV------HKIAISYKPDMTGPRNFMKVIEST 158 (658)
Q Consensus 92 ----~~-~~~~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~------~~~~V~~d~~~~~~~~i~~~i~~~ 158 (658)
.. .......+.|.++.-......+++.+.+.-.|..+++-... +.+.|+|+ +.++-.++|+.+
T Consensus 182 ~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~----~~e~A~~Ai~~l 255 (346)
T TIGR01659 182 SYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFN----KREEAQEAISAL 255 (346)
T ss_pred ecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEEC----CHHHHHHHHHHh
Confidence 00 11233457788886655667888888888778888775442 46889984 445566666654
No 134
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=24.44 E-value=2.5e+02 Score=33.94 Aligned_cols=185 Identities=15% Similarity=0.165 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCC-----------eEEEEeec--CCCCceeeEEeeCCCCCCCCEEEEeCCCeeeec
Q 042234 308 LGKYLEVLAKGKTSEAIAKLMDLAPE-----------TATLLTLD--EDGNVISEEEIDSRLIQRNDVIKIIPGAKVASD 374 (658)
Q Consensus 308 ~~~~l~~~~~~k~~~~~~~l~~~~~~-----------~~~v~r~~--~~g~~~~~~~i~~~~l~~GDii~v~~ge~iPaD 374 (658)
+-.+++.+...++.+.++++...... +...+... .-|. ...+..-|.+|-|.+.++. +-+-+|
T Consensus 126 ~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GD---iV~l~~Gd~IPaDg~li~g-~~l~VD 201 (903)
T PRK15122 126 LLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGD---IVHLSAGDMIPADVRLIES-RDLFIS 201 (903)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCC---EEEECCCCEEeeeEEEEEc-CceEEE
Confidence 33444555556777777777542211 11111110 1354 6777888888888887764 334556
Q ss_pred EEEEecce-eeecccc------------cCCCcc-----eeecCCCeeeeeceecCceEEEE----------EEEecCCc
Q 042234 375 GYVLWGQS-HVNESMI------------TGEARP-----VAKRKGYTVIGGTVNENGVLHIK----------ATRVGSES 426 (658)
Q Consensus 375 ~~vl~g~~-~vdes~L------------tGEs~p-----v~k~~g~~v~~Gt~~~~g~~~~~----------v~~~g~~T 426 (658)
=-.|-|++ .|+-... .++..+ -..-.|..+..|+...-=...+. +...-..|
T Consensus 202 ES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~~~v~~~~~~t 281 (903)
T PRK15122 202 QAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLAKSIVGTRAQT 281 (903)
T ss_pred ccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHHHHhcCCCCCC
Confidence 55666765 2332211 122111 13466788888774321111111 11111223
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHhHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCcCCCchhhHHHHHHHHhheeeee
Q 042234 427 ALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIA 506 (658)
Q Consensus 427 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli~~ 506 (658)
.+.+ +-.++.+.+.+++.++++++++++.+...-|.- .+..++..+++..-.+
T Consensus 282 ~l~~----------~l~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~~-----------------~l~~aisl~V~~~Pe~ 334 (903)
T PRK15122 282 AFDR----------GVNSVSWLLIRFMLVMVPVVLLINGFTKGDWLE-----------------ALLFALAVAVGLTPEM 334 (903)
T ss_pred cHHH----------HHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHH-----------------HHHHHHHHHHHHccch
Confidence 2221 112355667777777777776665432211211 2333445556666666
Q ss_pred ccccccchHHHHHHHHH
Q 042234 507 CPCALGLATPTAVMVGT 523 (658)
Q Consensus 507 ~P~~l~l~~~~~~~~~~ 523 (658)
.|.++++++..+.....
T Consensus 335 Lp~~vt~~La~g~~~ma 351 (903)
T PRK15122 335 LPMIVSSNLAKGAIAMA 351 (903)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777654443
No 135
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=24.18 E-value=1e+02 Score=23.81 Aligned_cols=31 Identities=29% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEeeecCccchh---HHHHHhhhhcCCCceEEee
Q 042234 100 HLQVDGIRTDHS---MRMIENSLQALPGVHGIGV 130 (658)
Q Consensus 100 ~~~v~gm~c~~c---~~~ie~~l~~~~GV~~v~v 130 (658)
.+......|+.. ...|+++|..+|||.+++|
T Consensus 39 ~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 39 SLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 333344455532 4688999999999998875
No 136
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=23.63 E-value=3.6e+02 Score=21.35 Aligned_cols=56 Identities=16% Similarity=0.376 Sum_probs=41.4
Q ss_pred CHHHHHHHHHhcCCccccccc----CCcceeEEEeeecCccchhHHHHHhhhhcCCCceEEee
Q 042234 72 NYNQILAAIEDTGFEATLIST----GEDMSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGV 130 (658)
Q Consensus 72 ~~~~i~~~i~~~Gy~~~~~~~----~~~~~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v 130 (658)
-.+.+...+.+-||...-... +....|+.+-+. .......+.++|.++..|.++++
T Consensus 16 VL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~---~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 16 VLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA---SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred HHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC---CCchHHHHHHHHhcCcCeEEEEE
Confidence 356777778889998754432 233467777763 47788899999999999998875
No 137
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.35 E-value=1.2e+02 Score=30.03 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCeEEEEeecCCCCceeeEEeeCC-CCCCCCEEEEeC
Q 042234 332 PETATLLTLDEDGNVISEEEIDSR-LIQRNDVIKIIP 367 (658)
Q Consensus 332 ~~~~~v~r~~~~g~~~~~~~i~~~-~l~~GDii~v~~ 367 (658)
+..+.++|...+|+. ...++... .|+|||+|.|.+
T Consensus 201 ~~~v~i~R~~~~g~~-~~~~~~~~~~l~~gDii~V~~ 236 (239)
T TIGR03028 201 ERGIRVMRRDDKGAV-EEVSGELGDLVQPDDVIYVRE 236 (239)
T ss_pred cceEEEEEECCCCcE-EEEecCCCcccCCCCEEEEeC
Confidence 467888887667762 12334444 389999998865
No 138
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=23.17 E-value=1.4e+02 Score=27.70 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=37.8
Q ss_pred chhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCC--CCChhhHHHHHHh
Q 042234 109 DHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPD--MTGPRNFMKVIES 157 (658)
Q Consensus 109 ~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~--~~~~~~i~~~i~~ 157 (658)
..-+..|.+.+.+++||.++.|=.....+.|-+++. ....+++.+.+++
T Consensus 74 ~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav~~~~~~~~~~~i~~~V~~ 124 (177)
T PF09580_consen 74 QQLADRIANRVKKVPGVEDATVVVTDDNAYVAVDLDFNRFNTKKIKKKVEK 124 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEECCEEEEEEEecccccchhHHHHHHHH
Confidence 344788999999999999999999999999888777 4445555544443
No 139
>PRK11018 hypothetical protein; Provisional
Probab=23.10 E-value=2.5e+02 Score=22.23 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=39.3
Q ss_pred EEEeeecCccchhHHHHHhhhhcCCCceEEeecCCccEEEEEeCCCCCChhhHHHHHHhcCC
Q 042234 99 IHLQVDGIRTDHSMRMIENSLQALPGVHGIGVDSGVHKIAISYKPDMTGPRNFMKVIESTGS 160 (658)
Q Consensus 99 ~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g~ 160 (658)
.++.++|..|+.-.-+..++|++++. ...+.|..|.. ...+++-...++.||
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~-~a~~di~~~~~~~G~ 60 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCP-QSINNIPLDARNHGY 60 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCc-cHHHHHHHHHHHcCC
Confidence 46889999999999999999998752 12345555533 457889999999993
No 140
>PHA03029 hypothetical protein; Provisional
Probab=22.70 E-value=2.4e+02 Score=21.92 Aligned_cols=26 Identities=15% Similarity=0.497 Sum_probs=18.5
Q ss_pred HhHhhhhhHHHHHHHHHHHHHHHHhh
Q 042234 450 DRISKYFVPLVIILSFSTWLAWFLAG 475 (658)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (658)
-.+..|++|+.+..+.-.+-+|+.+.
T Consensus 56 lnf~fwllp~al~a~fyffsiw~imn 81 (92)
T PHA03029 56 LNFLFWLLPFALAAAFYFFSIWFIMN 81 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheec
Confidence 34667788888887777777777653
No 141
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=22.41 E-value=1.5e+03 Score=27.86 Aligned_cols=209 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCceEEEee-ccCCeEEEEeCCCC-----CCHHHHHHHHHhcCCcccccccCCcceeEEEeeecCccch
Q 042234 37 STTVEKALQAIPGVQNVRVA-LATEAAEVHYDPKI-----LNYNQILAAIEDTGFEATLISTGEDMSKIHLQVDGIRTDH 110 (658)
Q Consensus 37 ~~~ve~~l~~~~gv~~~~v~-~~~~~~~v~~~~~~-----~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~v~gm~c~~ 110 (658)
.+.++..|+++|||.++++. .......+..|+.+ .++.++.+.+.......-.=.-.....++.++..|- ..
T Consensus 168 ~~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v~~ai~~~n~~~~~G~~~~~~~~~~v~~~~~--~~ 245 (1040)
T PRK10503 168 ETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGPTRAVTLSANDQ--MQ 245 (1040)
T ss_pred HHHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHHHHHHHHhCCcCCCEEEecCCEEEEEEECCc--cC
Q ss_pred hHHHHHhhhhc--------CCCceEEeecCCccEEEEEeCCCCC------------------ChhhHHHHHHhcCCCCcc
Q 042234 111 SMRMIENSLQA--------LPGVHGIGVDSGVHKIAISYKPDMT------------------GPRNFMKVIESTGSGRFK 164 (658)
Q Consensus 111 c~~~ie~~l~~--------~~GV~~v~v~~~~~~~~V~~d~~~~------------------~~~~i~~~i~~~g~~~~~ 164 (658)
....+++..-. +.-|.+++..........++|.... ..++.++.+++.-...++
T Consensus 246 ~~~~l~~i~I~~~~G~~v~L~dvA~V~~~~~~~~~~~~~nG~~av~l~v~~~~g~n~~~v~~~v~~~l~~~~~~lP~g~~ 325 (1040)
T PRK10503 246 SAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVK 325 (1040)
T ss_pred CHHHHhCcEEecCCCcEEEeeceEEEEeccccchhheeECCccEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCcE
Q ss_pred eeecCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcchhhhhhhhcHHHHHHHHHHHhhhhhcC
Q 042234 165 ARIFPEGGGGRENLKQEEIKQYYRSFLWSLVFTIPVFLTSMVFMYIPGIKHGLDTKIVNMLTIGEIIRWVLSTPVQFIIG 244 (658)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~g 244 (658)
.....+ .....++.+......++.++++.+.++++.+. .+...+...++.|+.+..+
T Consensus 326 ~~~~~d----~~~~i~~~i~~~~~~l~~~~~lv~~vl~lfl~-------------------~~r~~~i~~~~ip~s~~~~ 382 (1040)
T PRK10503 326 VTVLSD----RTTNIRASVDDTQFELMLAIALVVMIIYLFLR-------------------NIPATIIPGVAVPLSLIGT 382 (1040)
T ss_pred EEEEec----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------------chHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Q 042234 245 RRFYTGSYKALRHGSANLDVLISLGTNAAYF 275 (658)
Q Consensus 245 ~~~~~~a~~~l~~~~~~~d~l~~~~~~~a~~ 275 (658)
.-+..- ....+|+-+|+++.+.++.+
T Consensus 383 ~~~l~~-----~g~~ln~~sl~gl~~~iG~~ 408 (1040)
T PRK10503 383 FAVMVF-----LDFSINNLTLMALTIATGFV 408 (1040)
T ss_pred HHHHHH-----hCCCHHHHHHHHHHHheeee
No 142
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=22.38 E-value=59 Score=23.78 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=10.3
Q ss_pred CCCCEEEEeCCC
Q 042234 358 QRNDVIKIIPGA 369 (658)
Q Consensus 358 ~~GDii~v~~ge 369 (658)
.+||+|.++.|-
T Consensus 2 ~~GDvV~LKSGG 13 (53)
T PF09926_consen 2 KIGDVVQLKSGG 13 (53)
T ss_pred CCCCEEEEccCC
Confidence 589999999875
No 143
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=21.57 E-value=1.1e+03 Score=29.21 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=25.5
Q ss_pred HHHHHHHHhheeeeeccccccchHHHHHHHHHHH
Q 042234 492 FQLALQFGISVMVIACPCALGLATPTAVMVGTGV 525 (658)
Q Consensus 492 ~~~~~~~~~~vli~~~P~~l~l~~~~~~~~~~~~ 525 (658)
+..++..++++.--..|.++.+++..+.....++
T Consensus 399 ~l~~l~iiv~~vP~~LP~~~ti~l~~~~~rL~k~ 432 (1054)
T TIGR01657 399 ILRSLDIITIVVPPALPAELSIGINNSLARLKKK 432 (1054)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHC
Confidence 4556666777788888999988888887766653
No 144
>PRK04435 hypothetical protein; Provisional
Probab=21.12 E-value=4.8e+02 Score=23.56 Aligned_cols=59 Identities=15% Similarity=0.330 Sum_probs=39.2
Q ss_pred CHHHHHHHHHhcCCcccccccC---CcceeEEEeeecCccchhHHHHHhhhhcCCCceEEee
Q 042234 72 NYNQILAAIEDTGFEATLISTG---EDMSKIHLQVDGIRTDHSMRMIENSLQALPGVHGIGV 130 (658)
Q Consensus 72 ~~~~i~~~i~~~Gy~~~~~~~~---~~~~~~~~~v~gm~c~~c~~~ie~~l~~~~GV~~v~v 130 (658)
-..++...+.+.|-........ +....+.+.++--........+-+.|++++||.++++
T Consensus 82 lLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i 143 (147)
T PRK04435 82 TLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVEL 143 (147)
T ss_pred HHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEE
Confidence 3677888888888776444321 1224455555543333467889999999999998865
No 145
>PRK08433 flagellar motor switch protein; Validated
Probab=20.74 E-value=88 Score=26.86 Aligned_cols=21 Identities=19% Similarity=0.109 Sum_probs=11.4
Q ss_pred eeeeeceecC-ceEEEEEEEec
Q 042234 403 TVIGGTVNEN-GVLHIKATRVG 423 (658)
Q Consensus 403 ~v~~Gt~~~~-g~~~~~v~~~g 423 (658)
..|.|..... |..-++++..-
T Consensus 77 ~~f~G~~G~~~~k~AVrI~e~i 98 (111)
T PRK08433 77 IIGKGEVMVYEKNLAIRINEIL 98 (111)
T ss_pred EEEEEEEEEECCEEEEEEEEec
Confidence 4566665443 45555566553
No 146
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=20.46 E-value=67 Score=29.34 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.0
Q ss_pred hhhhcCCcEEEecCCCcccCCceeEE
Q 042234 539 LESAHKVNCIVFDKTGTLTVGKPVVV 564 (658)
Q Consensus 539 ~e~lg~v~~i~~DKTGTLT~~~~~v~ 564 (658)
.+.+.++..+++|=-||||.|++.+.
T Consensus 2 ~~ra~~IkLli~DVDGvLTDG~ly~~ 27 (170)
T COG1778 2 IARAKNIKLLILDVDGVLTDGKLYYD 27 (170)
T ss_pred hhhhhhceEEEEeccceeecCeEEEc
Confidence 46788899999999999999999764
No 147
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=20.24 E-value=1.7e+03 Score=27.51 Aligned_cols=61 Identities=16% Similarity=0.286 Sum_probs=41.7
Q ss_pred EEEEEecCCCCh---hhHHHHHHHHhCCCCceEEEeeccCC--eEEEEeCCCC-----CCHHHHHHHHHhc
Q 042234 23 LCRIGINGMTCT---TCSTTVEKALQAIPGVQNVRVALATE--AAEVHYDPKI-----LNYNQILAAIEDT 83 (658)
Q Consensus 23 ~~~~~i~gm~C~---~C~~~ve~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~-----~~~~~i~~~i~~~ 83 (658)
.+.+.+.|-+-. .-+..+++.+++.||+.+++.+...+ ...+..|+.. .+++++.+.+...
T Consensus 683 ~i~i~l~G~d~~~L~~~a~~v~~~l~~~pgv~~v~~~~~~~~~e~~i~id~~~~~~~Glt~~~v~~~l~~~ 753 (1051)
T TIGR00914 683 DVAVKVFGDDLDDLDATAEKISAVLKGVPGAADVKVEQTTGLPYLTVEIDREKAARYGLTVGDVQDTVATA 753 (1051)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHhcCCCceeeeccccCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 467788775422 23567888899999999999986543 4555555432 6677777777644
No 148
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=20.22 E-value=2.3e+02 Score=21.91 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=19.4
Q ss_pred CeEEEEeecCCCCceeeEEee---CCCCCCCCEEEEeCCCe
Q 042234 333 ETATLLTLDEDGNVISEEEID---SRLIQRNDVIKIIPGAK 370 (658)
Q Consensus 333 ~~~~v~r~~~~g~~~~~~~i~---~~~l~~GDii~v~~ge~ 370 (658)
..+++-. +|. .+++. ..++.|||.|.+..|--
T Consensus 17 ~~A~v~~---~G~---~~~V~~~lv~~v~~Gd~VLVHaG~A 51 (68)
T PF01455_consen 17 GMAVVDF---GGV---RREVSLALVPDVKVGDYVLVHAGFA 51 (68)
T ss_dssp TEEEEEE---TTE---EEEEEGTTCTSB-TT-EEEEETTEE
T ss_pred CEEEEEc---CCc---EEEEEEEEeCCCCCCCEEEEecChh
Confidence 3455533 564 45554 45688999999999854
No 149
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=20.19 E-value=63 Score=24.77 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=11.7
Q ss_pred CCCceeeEEeeCCCCCCCCEEEEeCCCe
Q 042234 343 DGNVISEEEIDSRLIQRNDVIKIIPGAK 370 (658)
Q Consensus 343 ~g~~~~~~~i~~~~l~~GDii~v~~ge~ 370 (658)
||+ ...-.-..|.+||+|.+ .|+.
T Consensus 38 NGe---~e~rrg~Kl~~GD~V~~-~~~~ 61 (65)
T PF13275_consen 38 NGE---VETRRGKKLRPGDVVEI-DGEE 61 (65)
T ss_dssp TTB-------SS----SSEEEEE-TTEE
T ss_pred CCE---EccccCCcCCCCCEEEE-CCEE
Confidence 665 44455677999999999 5444
Done!