Query 042235
Match_columns 225
No_of_seqs 177 out of 1482
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:51:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 5.9E-35 2E-39 207.2 1.7 74 5-80 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 1.2E-34 4.2E-39 210.6 2.1 76 5-82 1-76 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 3.9E-33 1.3E-37 206.0 0.9 73 3-77 15-87 (100)
4 1hbx_A SRF, serum response fac 100.0 5.5E-33 1.9E-37 202.6 0.0 72 3-76 9-80 (92)
5 1k6o_B SRF, serum response fac 100.0 2.1E-32 7.3E-37 203.3 0.4 70 3-74 8-77 (103)
6 3twe_A Alpha4H; unknown functi 89.3 0.65 2.2E-05 24.7 3.8 23 92-114 4-26 (27)
7 2rpa_A Katanin P60 ATPase-cont 73.1 3.2 0.00011 28.6 3.3 46 32-90 16-61 (78)
8 2k48_A Nucleoprotein; viral pr 60.3 12 0.00042 27.0 4.4 72 85-162 31-102 (107)
9 1a93_B MAX protein, coiled coi 50.0 34 0.0012 19.6 4.6 28 87-114 5-32 (34)
10 1p9i_A Cortexillin I/GCN4 hybr 48.7 24 0.00081 19.2 3.2 25 138-162 2-26 (31)
11 4g3b_A Alpha4F3D; alpha helix, 43.1 35 0.0012 17.7 3.8 21 93-113 5-25 (26)
12 4fi5_A Nucleoprotein; structur 40.4 57 0.0019 23.8 5.2 66 92-163 25-90 (113)
13 2ic6_A Nucleocapsid protein; h 36.9 74 0.0025 21.7 5.1 67 91-163 7-73 (78)
14 2yy0_A C-MYC-binding protein; 36.0 79 0.0027 19.7 4.9 40 70-109 6-46 (53)
15 2ic9_A Nucleocapsid protein; h 33.5 84 0.0029 22.3 5.1 67 91-163 7-73 (96)
16 1m1j_C Fibrinogen gamma chain; 28.9 2.3E+02 0.0079 25.2 8.5 42 66-113 24-65 (409)
17 2l5g_A GPS2 protein, G protein 23.1 1E+02 0.0035 17.9 3.3 28 135-162 8-35 (38)
18 1g6u_A Domain swapped dimer; d 21.8 1.3E+02 0.0045 17.7 3.7 28 134-161 16-46 (48)
19 3ra3_B P2F; coiled coil domain 21.5 1E+02 0.0035 16.2 3.3 23 86-108 4-26 (28)
20 1ov9_A VICH protein; dimer, he 20.5 1.5E+02 0.005 18.3 3.9 21 134-154 19-39 (50)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=5.9e-35 Score=207.21 Aligned_cols=74 Identities=26% Similarity=0.552 Sum_probs=69.6
Q ss_pred CccccceeecCCCCCcccchhccccchhhhhhhhhcccCcceeeeeccCCCCCceeeeCCCchhhHHHHHhhcCcc
Q 042235 5 GKRRIPLKRRDTKEQRAVSFSKRRHGLLNKAAEYCLRTRSQLALLVSSPVSDTTFYTFGHSSVDAVLDAFVNNRAP 80 (225)
Q Consensus 5 gr~ki~i~~I~~~~~R~~tf~kRr~gl~KKa~ELs~LC~~~valIvfs~~~~gk~~~f~spsv~~Vl~Ry~~~~~~ 80 (225)
||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||. |++|+|+||+|+.||+||...+.+
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~--gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSS--NKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTT--CCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCC--CCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999998 599999999999999999988643
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=1.2e-34 Score=210.55 Aligned_cols=76 Identities=25% Similarity=0.539 Sum_probs=72.8
Q ss_pred CccccceeecCCCCCcccchhccccchhhhhhhhhcccCcceeeeeccCCCCCceeeeCCCchhhHHHHHhhcCccch
Q 042235 5 GKRRIPLKRRDTKEQRAVSFSKRRHGLLNKAAEYCLRTRSQLALLVSSPVSDTTFYTFGHSSVDAVLDAFVNNRAPEA 82 (225)
Q Consensus 5 gr~ki~i~~I~~~~~R~~tf~kRr~gl~KKa~ELs~LC~~~valIvfs~~~~gk~~~f~spsv~~Vl~Ry~~~~~~e~ 82 (225)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||. |++|+|+||+|+.||+||...+.+..
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~--gk~~~f~s~~~~~il~rY~~~~~~~~ 76 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSS--NKLFQYASTDMDKVLLKYTEYNEPHE 76 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTT--CCEEEEESSCHHHHHHHHHHCCSCCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCC--CCEEEeCCCCHHHHHHHHHhcCcccc
Confidence 89999999999999999999999999999999999999999999999998 58999999999999999999886654
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.97 E-value=3.9e-33 Score=206.02 Aligned_cols=73 Identities=33% Similarity=0.509 Sum_probs=69.9
Q ss_pred CCCccccceeecCCCCCcccchhccccchhhhhhhhhcccCcceeeeeccCCCCCceeeeCCCchhhHHHHHhhc
Q 042235 3 AVGKRRIPLKRRDTKEQRAVSFSKRRHGLLNKAAEYCLRTRSQLALLVSSPVSDTTFYTFGHSSVDAVLDAFVNN 77 (225)
Q Consensus 3 ~mgr~ki~i~~I~~~~~R~~tf~kRr~gl~KKa~ELs~LC~~~valIvfs~~~~gk~~~f~spsv~~Vl~Ry~~~ 77 (225)
.|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||. |++|+|+||++..||++|...
T Consensus 15 ~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~--gk~~~f~sps~~~il~r~~G~ 87 (100)
T 1mnm_A 15 QKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSET--GLVYTFSTPKFEPIVTQQEGR 87 (100)
T ss_dssp CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTT--CCEEEEECTTTTHHHHSHHHH
T ss_pred CCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCC--CCcceecCCCHHHHHHHhhCC
Confidence 4999999999999999999999999999999999999999999999999998 599999999999999998654
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.97 E-value=5.5e-33 Score=202.65 Aligned_cols=72 Identities=31% Similarity=0.460 Sum_probs=68.5
Q ss_pred CCCccccceeecCCCCCcccchhccccchhhhhhhhhcccCcceeeeeccCCCCCceeeeCCCchhhHHHHHhh
Q 042235 3 AVGKRRIPLKRRDTKEQRAVSFSKRRHGLLNKAAEYCLRTRSQLALLVSSPVSDTTFYTFGHSSVDAVLDAFVN 76 (225)
Q Consensus 3 ~mgr~ki~i~~I~~~~~R~~tf~kRr~gl~KKa~ELs~LC~~~valIvfs~~~~gk~~~f~spsv~~Vl~Ry~~ 76 (225)
.|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||. |++|+|+||+|+.+|++|..
T Consensus 9 ~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~--gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 9 TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASET--GHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp SCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTT--SCEEEEECGGGGGGTSSHHH
T ss_pred CCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCC--CCEEEecCCCHHHHHhhhcc
Confidence 3999999999999999999999999999999999999999999999999998 59999999999999996643
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=2.1e-32 Score=203.26 Aligned_cols=70 Identities=31% Similarity=0.471 Sum_probs=67.5
Q ss_pred CCCccccceeecCCCCCcccchhccccchhhhhhhhhcccCcceeeeeccCCCCCceeeeCCCchhhHHHHH
Q 042235 3 AVGKRRIPLKRRDTKEQRAVSFSKRRHGLLNKAAEYCLRTRSQLALLVSSPVSDTTFYTFGHSSVDAVLDAF 74 (225)
Q Consensus 3 ~mgr~ki~i~~I~~~~~R~~tf~kRr~gl~KKa~ELs~LC~~~valIvfs~~~~gk~~~f~spsv~~Vl~Ry 74 (225)
.|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||. |++|+|++|+|+.||+++
T Consensus 8 ~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~--gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 8 TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASET--GHVYTFATRKLQPMITSE 77 (103)
T ss_dssp SCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSS--SCEEEEECGGGGGGTSSH
T ss_pred CCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCC--CCeeeecCccHHHHHHhh
Confidence 3999999999999999999999999999999999999999999999999998 599999999999999874
No 6
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=89.31 E-value=0.65 Score=24.67 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHh
Q 042235 92 ISMFNEVKDLELYDKKISKAIKS 114 (225)
Q Consensus 92 ~~l~kEl~~Le~qle~l~k~~r~ 114 (225)
..+.+|++.|++.+.++++..|+
T Consensus 4 delykeledlqerlrklrkklrs 26 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 45789999999999999888765
No 7
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=73.09 E-value=3.2 Score=28.61 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=33.5
Q ss_pred hhhhhhhhcccCcceeeeeccCCCCCceeeeCCCchhhHHHHHhhcCccchhhHHHHHH
Q 042235 32 LNKAAEYCLRTRSQLALLVSSPVSDTTFYTFGHSSVDAVLDAFVNNRAPEAADKELVRL 90 (225)
Q Consensus 32 ~KKa~ELs~LC~~~valIvfs~~~~gk~~~f~spsv~~Vl~Ry~~~~~~e~~~~~l~~~ 90 (225)
.|+|+|.+.+++=+.|++.|. ++..-|++|.....+.....+|.+.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~-------------g~~~qI~k~l~~~~d~~~r~kW~~~ 61 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ-------------GVLDQMNKYLYSVKDTHLRQKWQQV 61 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-------------HHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHH-------------HHHHHHHHHHHhcCCHHHHHhHHHH
Confidence 589999999999999988884 3556788998887543333455443
No 8
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=60.32 E-value=12 Score=27.04 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=46.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042235 85 KELVRLGISMFNEVKDLELYDKKISKAIKSDGNLEREGFWEDYEKLGNSDESIGELGVIVDKLAKAKEKAILRLTDLL 162 (225)
Q Consensus 85 ~~l~~~~~~l~kEl~~Le~qle~l~k~~r~~k~l~~~~~~~~i~~Lq~~~lsl~EL~~l~~~Le~~l~~i~~R~~~l~ 162 (225)
+.....+..+++|+...|.||-.++++.+... ..+..+-+++.+ -+++.-......|+.++..+++.+....
T Consensus 31 ~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe----~~~E~DPDevNK--~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 31 PFTMSTLQELQENITAHEQQLVTARQKLKDAE----KAVEVDPDDVNK--STLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667889999999999988877665432 222222233321 4566666677788888888777776654
No 9
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=50.05 E-value=34 Score=19.59 Aligned_cols=28 Identities=11% Similarity=0.258 Sum_probs=19.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 042235 87 LVRLGISMFNEVKDLELYDKKISKAIKS 114 (225)
Q Consensus 87 l~~~~~~l~kEl~~Le~qle~l~k~~r~ 114 (225)
+..+.+..+++|+.|+.|...|...+|.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 3445566778888888888877666653
No 10
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=48.72 E-value=24 Score=19.17 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042235 138 GELGVIVDKLAKAKEKAILRLTDLL 162 (225)
Q Consensus 138 ~EL~~l~~~Le~~l~~i~~R~~~l~ 162 (225)
++|+.++..|+..-+.++.+..++.
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888877777777777664
No 11
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=43.09 E-value=35 Score=17.75 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 042235 93 SMFNEVKDLELYDKKISKAIK 113 (225)
Q Consensus 93 ~l~kEl~~Le~qle~l~k~~r 113 (225)
...+|++..++.+.+.++..|
T Consensus 5 e~ykeled~qerlrk~rkklr 25 (26)
T 4g3b_A 5 EXYKELEDXQERLRKXRKKLR 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 356777777777777766655
No 12
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=40.41 E-value=57 Score=23.81 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=42.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 042235 92 ISMFNEVKDLELYDKKISKAIKSDGNLEREGFWEDYEKLGNSDESIGELGVIVDKLAKAKEKAILRLTDLLA 163 (225)
Q Consensus 92 ~~l~kEl~~Le~qle~l~k~~r~~k~l~~~~~~~~i~~Lq~~~lsl~EL~~l~~~Le~~l~~i~~R~~~l~~ 163 (225)
..+++|+...|.||-.++++.+... ..+..+-+++.+ -+++.-......|+.++..+++.+.....
T Consensus 25 eeLq~Ei~~~E~QL~~ArQKLkdA~----~~~e~DPDevNK--~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 25 EELQREINAHEGQLVIARQKVRDAE----KQYEKDPDELNK--RTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888887776665432 122112222221 45666666788888888888888877765
No 13
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=36.91 E-value=74 Score=21.71 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=40.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 042235 91 GISMFNEVKDLELYDKKISKAIKSDGNLEREGFWEDYEKLGNSDESIGELGVIVDKLAKAKEKAILRLTDLLA 163 (225)
Q Consensus 91 ~~~l~kEl~~Le~qle~l~k~~r~~k~l~~~~~~~~i~~Lq~~~lsl~EL~~l~~~Le~~l~~i~~R~~~l~~ 163 (225)
+..+++|+...|.||-.+.++.+... ..+..+-+++.+ -+++.-......|..++..++..+.....
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~----~~~e~DPDevNK--~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAE----RAVELDPDDVNK--STLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888887766655432 122222222221 45556566777777777777776666543
No 14
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=36.03 E-value=79 Score=19.73 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=19.2
Q ss_pred HHHHHhhcCcc-chhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042235 70 VLDAFVNNRAP-EAADKELVRLGISMFNEVKDLELYDKKIS 109 (225)
Q Consensus 70 Vl~Ry~~~~~~-e~~~~~l~~~~~~l~kEl~~Le~qle~l~ 109 (225)
-|.+|.....| ......|..+...+..++..|.++++.+.
T Consensus 6 fIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 6 FLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566653222 23345666777777777777777776663
No 15
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=33.47 E-value=84 Score=22.28 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=41.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 042235 91 GISMFNEVKDLELYDKKISKAIKSDGNLEREGFWEDYEKLGNSDESIGELGVIVDKLAKAKEKAILRLTDLLA 163 (225)
Q Consensus 91 ~~~l~kEl~~Le~qle~l~k~~r~~k~l~~~~~~~~i~~Lq~~~lsl~EL~~l~~~Le~~l~~i~~R~~~l~~ 163 (225)
+..+++|+...|.||-.++++.+... ..+..+-+++.+ -+++.-......|..++..++..+.....
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~----~~~e~DPDevNk--~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAE----RAVELDPDDVNK--STLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888887766655432 112112222221 45556666777888888888877777654
No 16
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.91 E-value=2.3e+02 Score=25.17 Aligned_cols=42 Identities=10% Similarity=0.057 Sum_probs=26.4
Q ss_pred chhhHHHHHhhcCccchhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042235 66 SVDAVLDAFVNNRAPEAADKELVRLGISMFNEVKDLELYDKKISKAIK 113 (225)
Q Consensus 66 sv~~Vl~Ry~~~~~~e~~~~~l~~~~~~l~kEl~~Le~qle~l~k~~r 113 (225)
.+...|.+|+...+ +.+ ++++.+.++|+.+......+++.++
T Consensus 24 ~i~d~L~k~e~~V~-----~~l-~~LE~~l~elsn~ts~v~~Lvk~iq 65 (409)
T 1m1j_C 24 GIADFFNKYRLTTD-----GEL-LEIEGLLQQATNSTGSIEYLIQHIK 65 (409)
T ss_dssp HHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcch-----hHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999988643 222 3335566677766666555555443
No 17
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.11 E-value=1e+02 Score=17.95 Aligned_cols=28 Identities=18% Similarity=0.007 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042235 135 ESIGELGVIVDKLAKAKEKAILRLTDLL 162 (225)
Q Consensus 135 lsl~EL~~l~~~Le~~l~~i~~R~~~l~ 162 (225)
++++|-.....++...+..++..+.+|.
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888764
No 18
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.81 E-value=1.3e+02 Score=17.74 Aligned_cols=28 Identities=25% Similarity=0.163 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 042235 134 DESIGELGVIVD---KLAKAKEKAILRLTDL 161 (225)
Q Consensus 134 ~lsl~EL~~l~~---~Le~~l~~i~~R~~~l 161 (225)
+.|.+||..++. .|++++..++.++..+
T Consensus 16 gfspeelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366677666554 4455566666555443
No 19
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.46 E-value=1e+02 Score=16.24 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=15.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 042235 86 ELVRLGISMFNEVKDLELYDKKI 108 (225)
Q Consensus 86 ~l~~~~~~l~kEl~~Le~qle~l 108 (225)
.+++....+.+|+..|+-++..+
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 35566667777888777766543
No 20
>1ov9_A VICH protein; dimer, helix, coiled-coil, DNA binding protein; 2.30A {Vibrio cholerae} SCOP: a.155.1.1
Probab=20.52 E-value=1.5e+02 Score=18.29 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 042235 134 DESIGELGVIVDKLAKAKEKA 154 (225)
Q Consensus 134 ~lsl~EL~~l~~~Le~~l~~i 154 (225)
++++++|..+..+|...++.-
T Consensus 19 elsle~Lee~~eKl~~Vv~Er 39 (50)
T 1ov9_A 19 ELTIEQLEEALDKLTTVVQER 39 (50)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHH
Confidence 699999999988888766553
Done!