BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042237
MFVRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGL
TGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPNNLNQAKSGKDLSP

High Scoring Gene Products

Symbol, full name Information P value
AT5G49410 protein from Arabidopsis thaliana 5.0e-44
AT1G73940 protein from Arabidopsis thaliana 1.3e-20

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042237
        (115 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2158034 - symbol:AT5G49410 "AT5G49410" species...   464  5.0e-44   1
TAIR|locus:2031481 - symbol:AT1G73940 "AT1G73940" species...   243  1.3e-20   1


>TAIR|locus:2158034 [details] [associations]
            symbol:AT5G49410 "AT5G49410" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 EMBL:AB023034 EMBL:BT025506
            EMBL:AK176066 IPI:IPI00542094 RefSeq:NP_001032044.1
            RefSeq:NP_199752.1 UniGene:At.29785 EnsemblPlants:AT5G49410.1
            EnsemblPlants:AT5G49410.2 GeneID:835001 KEGG:ath:AT5G49410
            TAIR:At5g49410 HOGENOM:HOG000006293 InParanoid:Q9FGX6 OMA:ICNHVGP
            PhylomeDB:Q9FGX6 ProtClustDB:CLSN2686821 ArrayExpress:Q9FGX6
            Genevestigator:Q9FGX6 Uniprot:Q9FGX6
        Length = 145

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 81/102 (79%), Positives = 92/102 (90%)

Query:     1 MFVRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGL 60
             M  R+ +TKPKPKMKPIEL  PPEQTQTITRVIFDI+K+HGPLT+AETW+RV++ G+ GL
Sbjct:    19 MLTRHFATKPKPKMKPIELNTPPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGLRGL 78

Query:    61 TGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPN 102
             T K HMKI+LRWMRERQKL+LICNHVGPHKQFLYTTWFTK N
Sbjct:    79 TSKRHMKIILRWMRERQKLKLICNHVGPHKQFLYTTWFTKHN 120


>TAIR|locus:2031481 [details] [associations]
            symbol:AT1G73940 "AT1G73940" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] [GO:0006364 "rRNA processing" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC016662 EMBL:AY057650
            EMBL:AY113017 EMBL:AY087181 IPI:IPI00521297 PIR:A96767
            RefSeq:NP_565076.1 UniGene:At.18208 STRING:Q9C9B5 PaxDb:Q9C9B5
            PRIDE:Q9C9B5 EnsemblPlants:AT1G73940.1 GeneID:843731
            KEGG:ath:AT1G73940 TAIR:At1g73940 eggNOG:NOG251561
            HOGENOM:HOG000147097 InParanoid:Q9C9B5 OMA:KTHMKIM PhylomeDB:Q9C9B5
            ProtClustDB:CLSN2689188 Genevestigator:Q9C9B5 Uniprot:Q9C9B5
        Length = 151

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 43/95 (45%), Positives = 65/95 (68%)

Query:     1 MFVRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGL 60
             + VRY+S +    ++ I  K P ++   I+  ++D+ K HGPL+V  TW R Q+AGVSGL
Sbjct:    29 LLVRYMSRERAVNVRKINPKVPIQEAYAISNSLYDLFKLHGPLSVPNTWLRAQEAGVSGL 88

Query:    61 TGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYT 95
               K+HMK++L+WMR ++ L+LICN VG  K+F +T
Sbjct:    89 NSKTHMKLLLKWMRGKKMLKLICNQVGSSKKFFHT 123


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      115       115   0.00091  102 3  11 22  0.47    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  138 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.43u 0.14s 13.57t   Elapsed:  00:00:01
  Total cpu time:  13.43u 0.14s 13.57t   Elapsed:  00:00:01
  Start:  Mon May 20 22:55:00 2013   End:  Mon May 20 22:55:01 2013

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