BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042237
         (115 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q09644|NDUF7_CAEEL NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
          homolog OS=Caenorhabditis elegans GN=ZK1128.1 PE=3 SV=4
          Length = 426

 Score = 30.0 bits (66), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 21 APPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGK 63
          A PE+T  + + + D ++  GP+TVAE  +    A + G  G+
Sbjct: 27 ASPEKTNHLKKFLVDKIRVSGPITVAEYMKTCVSAPLVGYYGQ 69


>sp|P20703|UVSW_BPT4 ATP-dependent DNA helicase uvsW OS=Enterobacteria phage T4 GN=uvsW
           PE=1 SV=2
          Length = 587

 Score = 29.6 bits (65), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 27  QTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIV 69
           QTI RV+    ++HG  T+A  W+ +  AGV   +  +  K V
Sbjct: 434 QTIGRVL----RKHGSKTIATVWDLIDSAGVKPKSANTKKKYV 472


>sp|B1I012|UNG_LYSSC Uracil-DNA glycosylase OS=Lysinibacillus sphaericus (strain C3-41)
           GN=ung PE=3 SV=1
          Length = 225

 Score = 29.3 bits (64), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 47  ETWERVQQAGVSGLTGKSHMKIVLRWMRERQ-KLRLICNHVGPH 89
           + WE+   A +  L  +    I + W +  Q K +LIC H  PH
Sbjct: 139 QGWEQFTDAVIDKLAAREEPLIFVLWGKPAQRKKQLICKHATPH 182


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,218,372
Number of Sequences: 539616
Number of extensions: 1619206
Number of successful extensions: 3422
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3419
Number of HSP's gapped (non-prelim): 5
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)