Query 042237
Match_columns 115
No_of_seqs 23 out of 25
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 06:54:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fu4_A Ferric uptake regulatio 82.7 2.4 8.3E-05 25.8 4.6 50 31-82 20-71 (83)
2 1xmk_A Double-stranded RNA-spe 79.8 2.5 8.4E-05 27.9 4.1 32 24-58 7-38 (79)
3 2pjp_A Selenocysteine-specific 77.1 8.4 0.00029 25.7 6.2 50 21-77 59-108 (121)
4 2p5k_A Arginine repressor; DNA 76.1 3.4 0.00012 23.8 3.6 25 33-57 10-34 (64)
5 1p6r_A Penicillinase repressor 75.1 6 0.0002 24.1 4.7 61 32-99 13-73 (82)
6 1am7_A Lysozyme; glycosidase, 68.7 5.4 0.00018 29.6 3.9 37 46-82 71-108 (158)
7 2cqn_A Formin-binding protein 68.3 3.1 0.0001 27.3 2.3 58 29-89 11-75 (77)
8 2htj_A P fimbrial regulatory p 66.6 12 0.00042 22.8 4.7 51 31-88 3-53 (81)
9 3eyy_A Putative iron uptake re 64.3 6.5 0.00022 27.1 3.4 51 31-83 22-72 (145)
10 1sfx_A Conserved hypothetical 59.4 18 0.00063 21.6 4.5 57 32-96 24-80 (109)
11 1okr_A MECI, methicillin resis 58.3 15 0.00052 23.2 4.2 59 32-97 14-72 (123)
12 4f3n_A Uncharacterized ACR, CO 56.0 14 0.00048 31.0 4.6 37 17-53 45-86 (432)
13 2okq_A Hypothetical protein YB 53.1 3.1 0.00011 31.1 0.2 27 24-50 41-67 (141)
14 1wlx_A Alpha-actinin 4; three- 52.8 20 0.0007 25.8 4.5 32 24-55 69-113 (129)
15 2oxl_A Hypothetical protein YM 52.2 12 0.00041 24.1 2.9 27 21-47 2-28 (64)
16 3b73_A PHIH1 repressor-like pr 51.6 11 0.00037 25.8 2.8 48 29-81 14-61 (111)
17 2fk5_A Fuculose-1-phosphate al 51.4 6.5 0.00022 28.7 1.7 34 21-54 128-171 (200)
18 3f1b_A TETR-like transcription 51.4 30 0.001 22.2 4.8 36 20-58 9-47 (203)
19 2irp_A Putative aldolase class 50.8 3.6 0.00012 29.7 0.2 31 24-54 151-188 (208)
20 1mzb_A Ferric uptake regulatio 50.6 14 0.00049 24.9 3.2 51 31-83 21-73 (136)
21 3mwm_A ZUR, putative metal upt 50.6 13 0.00045 25.4 3.1 52 31-84 17-69 (139)
22 1xn7_A Hypothetical protein YH 50.3 9.6 0.00033 24.6 2.2 46 30-82 4-49 (78)
23 2xig_A Ferric uptake regulatio 50.1 17 0.00059 25.1 3.7 50 32-83 31-81 (150)
24 2fe3_A Peroxide operon regulat 49.2 15 0.0005 25.1 3.1 50 32-83 26-76 (145)
25 2xki_A Neural hemoglobin; oxyg 48.8 20 0.00069 23.5 3.7 36 17-52 71-106 (110)
26 2jt1_A PEFI protein; solution 48.6 32 0.0011 22.1 4.6 55 30-91 6-66 (77)
27 2k4b_A Transcriptional regulat 48.4 11 0.00037 25.0 2.3 58 32-96 39-96 (99)
28 2gmg_A Hypothetical protein PF 48.1 23 0.00079 25.0 4.1 60 26-89 9-76 (105)
29 1t6s_A Conserved hypothetical 47.7 21 0.00074 26.1 4.0 60 27-96 90-152 (162)
30 3cjn_A Transcriptional regulat 46.4 31 0.001 22.5 4.3 55 32-93 56-110 (162)
31 4ets_A Ferric uptake regulatio 46.2 18 0.00063 25.4 3.4 52 31-84 36-90 (162)
32 1oyi_A Double-stranded RNA-bin 46.1 10 0.00035 25.3 1.9 56 25-91 14-69 (82)
33 2o03_A Probable zinc uptake re 46.0 21 0.00072 23.9 3.5 51 31-83 14-65 (131)
34 3k1r_B Usher syndrome type-1G 45.5 26 0.00088 22.2 3.7 40 34-78 18-61 (74)
35 2bk9_A CG9734-PA; oxygen trans 44.9 30 0.001 23.3 4.2 38 17-54 97-136 (153)
36 2w57_A Ferric uptake regulatio 44.8 18 0.00063 24.9 3.1 51 31-83 20-72 (150)
37 2k02_A Ferrous iron transport 44.3 12 0.00042 24.9 2.1 45 31-82 5-49 (87)
38 1tu9_A Hypothetical protein PA 43.8 33 0.0011 22.5 4.2 39 18-56 83-124 (134)
39 2qww_A Transcriptional regulat 43.7 47 0.0016 21.2 4.8 43 32-81 45-87 (154)
40 3bja_A Transcriptional regulat 43.3 29 0.00099 21.6 3.7 44 32-82 37-80 (139)
41 1fp2_A Isoflavone O-methyltran 41.4 38 0.0013 25.4 4.6 45 33-84 41-86 (352)
42 3knw_A Putative transcriptiona 41.2 46 0.0016 21.5 4.5 35 21-58 11-47 (212)
43 2doe_A Transcription elongatio 41.2 22 0.00076 23.2 2.9 27 28-55 18-44 (83)
44 3dp7_A SAM-dependent methyltra 41.1 32 0.0011 26.2 4.2 37 33-76 40-77 (363)
45 3k2z_A LEXA repressor; winged 41.1 28 0.00094 24.5 3.6 46 27-79 8-54 (196)
46 1zg3_A Isoflavanone 4'-O-methy 40.8 33 0.0011 25.8 4.2 47 32-85 34-81 (358)
47 2eth_A Transcriptional regulat 39.4 50 0.0017 21.4 4.5 44 32-82 48-91 (154)
48 2r3s_A Uncharacterized protein 39.0 29 0.00098 25.3 3.5 39 33-79 31-69 (335)
49 1lva_A Selenocysteine-specific 39.0 23 0.0008 26.5 3.1 51 21-79 196-246 (258)
50 3pqk_A Biofilm growth-associat 38.6 48 0.0017 20.5 4.2 34 32-69 27-60 (102)
51 1x19_A CRTF-related protein; m 37.9 36 0.0012 25.5 4.0 42 32-84 55-96 (359)
52 3r0a_A Putative transcriptiona 37.9 45 0.0015 22.0 4.1 59 31-96 29-90 (123)
53 1qbj_A Protein (double-strande 37.9 39 0.0013 21.8 3.7 27 29-58 11-40 (81)
54 2z7b_A MLR6791 protein; class 37.5 5 0.00017 30.8 -0.8 32 23-54 178-213 (270)
55 2opi_A L-fuculose-1-phosphate 37.5 4.8 0.00016 29.3 -0.9 32 23-54 137-172 (212)
56 3bpv_A Transcriptional regulat 37.1 36 0.0012 21.3 3.4 45 32-83 33-77 (138)
57 2fbi_A Probable transcriptiona 37.0 30 0.001 21.6 3.0 44 32-82 40-83 (142)
58 2bv6_A MGRA, HTH-type transcri 36.9 40 0.0014 21.3 3.6 55 32-93 41-95 (142)
59 3dew_A Transcriptional regulat 36.5 42 0.0014 21.3 3.6 32 24-58 8-41 (206)
60 2ip2_A Probable phenazine-spec 35.7 38 0.0013 24.8 3.8 40 33-83 33-72 (334)
61 3f0c_A TETR-molecule A, transc 35.7 46 0.0016 21.7 3.8 33 23-58 10-44 (216)
62 3hta_A EBRA repressor; TETR fa 35.2 61 0.0021 21.8 4.5 31 25-58 29-61 (217)
63 1qgp_A Protein (double strande 35.0 59 0.002 20.3 4.1 26 30-58 16-44 (77)
64 3vp5_A Transcriptional regulat 34.9 69 0.0024 21.0 4.6 34 22-58 10-45 (189)
65 3pt8_B Hemoglobin III; oxygen 34.9 51 0.0017 22.0 4.0 39 17-55 99-139 (152)
66 2c0k_A Hemoglobin; oxygen tran 34.9 59 0.002 21.9 4.4 39 16-54 97-137 (151)
67 3lwj_A Putative TETR-family tr 34.6 52 0.0018 21.2 3.9 33 23-58 11-45 (202)
68 2krc_A DNA-directed RNA polyme 34.5 38 0.0013 23.2 3.4 28 28-55 14-42 (99)
69 2qtq_A Transcriptional regulat 34.4 80 0.0027 20.3 4.8 34 22-58 14-49 (213)
70 3cwr_A Transcriptional regulat 34.4 78 0.0027 20.1 4.7 33 23-58 16-50 (208)
71 3col_A Putative transcription 34.1 48 0.0017 20.9 3.6 33 23-58 9-43 (196)
72 3dcf_A Transcriptional regulat 34.0 59 0.002 21.0 4.1 33 23-58 30-64 (218)
73 1y7y_A C.AHDI; helix-turn-heli 33.8 65 0.0022 18.0 6.4 61 23-94 8-73 (74)
74 4b4y_A Neuroglobin; transport 33.7 79 0.0027 21.3 4.9 38 16-53 103-145 (154)
75 1pb6_A Hypothetical transcript 33.7 54 0.0018 21.2 3.9 32 24-58 18-51 (212)
76 1s3j_A YUSO protein; structura 33.3 67 0.0023 20.4 4.3 44 32-82 41-84 (155)
77 1b0b_A Hemoglobin; hemoprotein 33.3 42 0.0014 22.2 3.4 38 16-55 96-133 (142)
78 2pex_A Transcriptional regulat 33.3 49 0.0017 21.2 3.6 44 33-83 52-95 (153)
79 3zzp_A TS9, ribosomal protein 33.2 43 0.0015 21.6 3.3 25 17-41 52-76 (77)
80 2rae_A Transcriptional regulat 33.2 67 0.0023 20.8 4.3 33 23-58 16-50 (207)
81 3jth_A Transcription activator 33.0 27 0.00092 21.5 2.2 41 32-80 27-67 (98)
82 3kkc_A TETR family transcripti 32.8 39 0.0013 21.4 3.0 31 25-58 13-45 (177)
83 1sgm_A Putative HTH-type trans 32.8 56 0.0019 20.6 3.8 40 24-66 6-54 (191)
84 3gzi_A Transcriptional regulat 32.5 46 0.0016 21.7 3.4 36 21-59 14-51 (218)
85 1yzv_A Hypothetical protein; s 32.3 16 0.00053 26.7 1.2 15 31-45 190-204 (204)
86 3i4p_A Transcriptional regulat 32.3 36 0.0012 23.3 3.0 47 29-82 4-50 (162)
87 3bdd_A Regulatory protein MARR 31.9 77 0.0026 19.7 4.3 44 32-82 35-78 (142)
88 3cdh_A Transcriptional regulat 31.8 46 0.0016 21.4 3.3 44 32-82 47-90 (155)
89 3bru_A Regulatory protein, TET 31.6 67 0.0023 21.0 4.1 32 24-58 30-63 (222)
90 3bro_A Transcriptional regulat 31.4 88 0.003 19.5 4.5 45 32-83 38-84 (141)
91 3o1f_A ATP-dependent CLP prote 31.0 44 0.0015 22.0 3.1 24 21-44 51-75 (81)
92 3lb2_A Dehaloperoxidase A; glo 30.7 76 0.0026 21.7 4.4 35 20-54 91-125 (137)
93 1u2w_A CADC repressor, cadmium 30.7 38 0.0013 22.1 2.8 35 32-69 46-80 (122)
94 2f07_A YVDT; helix-turn-helix, 30.4 75 0.0026 20.8 4.2 32 24-58 10-43 (197)
95 1fp1_D Isoliquiritigenin 2'-O- 30.4 57 0.002 24.6 4.1 48 33-84 49-100 (372)
96 1k0w_A L-ribulose 5 phosphate 30.1 5.1 0.00017 29.5 -1.8 19 36-54 167-185 (231)
97 2v9l_A Rhamnulose-1-phosphate 29.7 9 0.00031 29.2 -0.5 32 23-54 191-226 (274)
98 4fye_A SIDF, inhibitor of grow 29.6 4.8 0.00016 35.7 -2.3 50 20-69 329-380 (761)
99 2rdp_A Putative transcriptiona 29.5 73 0.0025 20.2 3.9 44 32-82 46-89 (150)
100 3r3t_A 30S ribosomal protein S 29.1 52 0.0018 21.7 3.3 34 17-50 13-47 (99)
101 1x46_A Globin chain, hemoglobi 28.6 75 0.0026 21.1 4.0 38 18-55 101-141 (150)
102 2d9a_A B-MYB, MYB-related prot 28.5 92 0.0032 18.2 4.0 35 31-73 17-51 (60)
103 3or1_C Sulfite reductase GAMA; 28.5 9.2 0.00031 26.6 -0.6 61 39-101 15-88 (105)
104 1cqm_A Ribosomal protein S6; a 28.5 56 0.0019 21.5 3.3 33 17-49 10-43 (101)
105 2x4k_A 4-oxalocrotonate tautom 28.5 61 0.0021 17.8 3.1 21 20-40 13-33 (63)
106 3dpj_A Transcription regulator 28.4 74 0.0025 20.3 3.8 32 24-58 8-41 (194)
107 1guu_A C-MYB, MYB proto-oncoge 28.2 86 0.0029 17.7 4.1 35 31-73 12-46 (52)
108 3mvp_A TETR/ACRR transcription 28.2 85 0.0029 20.2 4.1 31 25-58 27-59 (217)
109 2nnn_A Probable transcriptiona 27.9 56 0.0019 20.3 3.1 44 32-82 42-85 (140)
110 2r80_A Hemoglobin subunit alph 27.9 63 0.0022 21.7 3.6 45 19-63 91-139 (141)
111 2zb9_A Putative transcriptiona 27.8 68 0.0023 21.0 3.7 30 26-58 25-56 (214)
112 1otf_A 4-oxalocrotonate tautom 27.7 56 0.0019 18.3 2.8 27 21-47 11-37 (62)
113 3o63_A Probable thiamine-phosp 27.6 35 0.0012 25.8 2.4 38 23-60 78-116 (243)
114 2zkz_A Transcriptional repress 27.6 46 0.0016 21.0 2.7 35 32-69 31-65 (99)
115 3on2_A Probable transcriptiona 27.5 94 0.0032 19.6 4.2 33 23-58 11-45 (199)
116 1y0u_A Arsenical resistance op 27.4 47 0.0016 20.5 2.7 40 32-80 35-74 (96)
117 3qkx_A Uncharacterized HTH-typ 27.3 79 0.0027 19.8 3.8 32 24-58 8-41 (188)
118 3lhq_A Acrab operon repressor 27.3 1.1E+02 0.0037 19.6 4.5 32 24-58 14-47 (220)
119 2z99_A Putative uncharacterize 27.2 45 0.0015 25.7 3.0 40 33-82 105-144 (219)
120 4a6d_A Hydroxyindole O-methylt 27.2 28 0.00097 26.5 1.9 40 33-79 33-73 (353)
121 3on4_A Transcriptional regulat 27.1 96 0.0033 19.5 4.2 33 23-58 9-43 (191)
122 1e4c_P L-fuculose 1-phosphate 27.0 6.2 0.00021 28.8 -1.8 31 24-54 135-169 (215)
123 3reo_A (ISO)eugenol O-methyltr 26.6 85 0.0029 23.9 4.5 44 33-82 46-93 (368)
124 2jr2_A UPF0352 protein CPS_261 26.5 52 0.0018 22.3 2.9 24 17-41 45-72 (76)
125 3rd3_A Probable transcriptiona 26.4 86 0.0029 19.8 3.8 41 22-65 8-56 (197)
126 2dg8_A Putative TETR-family tr 26.2 76 0.0026 20.6 3.6 33 24-59 9-43 (193)
127 1sd4_A Penicillinase repressor 26.1 53 0.0018 20.6 2.8 59 32-97 14-72 (126)
128 2g7l_A TETR-family transcripti 26.0 69 0.0024 22.9 3.7 40 16-58 11-52 (243)
129 3cuo_A Uncharacterized HTH-typ 25.9 46 0.0016 19.9 2.3 43 32-81 28-70 (99)
130 3lst_A CALO1 methyltransferase 25.8 35 0.0012 25.6 2.1 41 33-84 47-87 (348)
131 1jf3_A Monomer hemoglobin comp 25.7 1.1E+02 0.0038 20.1 4.4 36 19-54 96-135 (147)
132 2cfx_A HTH-type transcriptiona 25.7 96 0.0033 20.5 4.1 47 30-83 7-53 (144)
133 1eca_A Erythrocruorin (AQUO Me 25.5 1E+02 0.0034 20.6 4.2 36 17-52 88-124 (136)
134 3i53_A O-methyltransferase; CO 25.2 60 0.002 23.9 3.3 21 33-57 30-50 (332)
135 3ocr_A Class II aldolase/adduc 25.1 9.3 0.00032 29.5 -1.2 31 23-53 169-203 (273)
136 4aci_A HTH-type transcriptiona 25.1 55 0.0019 20.9 2.7 34 22-58 12-47 (191)
137 1ith_A Hemoglobin (cyano Met); 25.1 96 0.0033 20.5 4.0 39 16-54 94-134 (141)
138 1lj9_A Transcriptional regulat 25.1 1.1E+02 0.0036 19.2 4.1 44 33-83 34-77 (144)
139 2fa5_A Transcriptional regulat 24.8 93 0.0032 20.0 3.8 43 33-82 54-96 (162)
140 1gvd_A MYB proto-oncogene prot 24.5 1E+02 0.0036 17.4 3.7 35 31-73 12-46 (52)
141 3s2w_A Transcriptional regulat 24.5 1E+02 0.0036 19.9 4.1 44 32-82 54-97 (159)
142 1yhu_A Hemoglobin A1 chain; gl 24.5 73 0.0025 21.4 3.4 38 16-54 94-133 (145)
143 3ppb_A Putative TETR family tr 24.4 97 0.0033 19.5 3.8 32 24-58 9-42 (195)
144 2dim_A Cell division cycle 5-l 24.2 84 0.0029 19.0 3.4 35 31-73 18-52 (70)
145 2iu5_A DHAS, YCEG, HTH-type dh 24.0 86 0.0029 20.4 3.6 33 24-59 13-47 (195)
146 1jgs_A Multiple antibiotic res 23.9 1.3E+02 0.0045 18.6 4.3 45 33-84 39-83 (138)
147 2p5v_A Transcriptional regulat 23.9 76 0.0026 21.3 3.4 51 29-86 11-61 (162)
148 3m4r_A Uncharacterized protein 23.8 6.6 0.00023 29.2 -2.2 31 24-54 167-202 (222)
149 2kjw_A TS9, 30S ribosomal prot 23.6 83 0.0028 21.2 3.5 33 17-49 52-85 (96)
150 2opa_A Probable tautomerase YW 23.6 68 0.0023 17.9 2.7 19 22-40 12-30 (61)
151 3bj6_A Transcriptional regulat 23.5 1.2E+02 0.0042 19.1 4.2 46 32-84 44-89 (152)
152 2w72_C Human hemoglobin A; iro 23.5 58 0.002 21.6 2.7 40 19-58 91-134 (141)
153 2heo_A Z-DNA binding protein 1 23.4 54 0.0018 19.7 2.3 27 29-58 11-38 (67)
154 2zcm_A Biofilm operon icaabcd 23.3 97 0.0033 19.9 3.7 31 25-58 8-40 (192)
155 2vxz_A Pyrsv_GP04; viral prote 23.3 85 0.0029 24.0 3.8 29 26-58 9-37 (165)
156 1bin_A Leghemoglobin A; heme, 23.2 90 0.0031 20.1 3.6 38 16-53 92-133 (143)
157 3oop_A LIN2960 protein; protei 23.1 1.4E+02 0.0047 18.8 4.3 44 32-82 41-84 (143)
158 3p9c_A Caffeic acid O-methyltr 22.9 39 0.0013 25.9 1.9 45 33-82 45-91 (364)
159 2iai_A Putative transcriptiona 22.9 77 0.0026 21.4 3.2 31 25-58 31-63 (230)
160 3ljl_A Transcriptional regulat 22.8 53 0.0018 21.1 2.3 32 24-58 14-47 (156)
161 1qzz_A RDMB, aclacinomycin-10- 22.8 91 0.0031 23.1 3.9 41 32-83 40-80 (374)
162 2g7g_A RHA04620, putative tran 22.7 86 0.0029 21.5 3.5 33 23-58 10-42 (213)
163 1z91_A Organic hydroperoxide r 22.7 1E+02 0.0035 19.4 3.7 45 32-83 44-88 (147)
164 1h97_A Globin-3; HET: HEM; 1.1 22.7 1.7E+02 0.0058 19.7 5.0 38 16-54 98-137 (147)
165 2gxg_A 146AA long hypothetical 22.6 1.3E+02 0.0045 18.8 4.1 42 33-82 42-83 (146)
166 3he0_A Transcriptional regulat 22.5 1.1E+02 0.0038 19.3 3.8 32 24-58 11-44 (196)
167 3q0w_A HTH-type transcriptiona 22.2 1.1E+02 0.0036 20.7 3.9 32 24-58 44-77 (236)
168 3frq_A Repressor protein MPHR( 22.1 65 0.0022 20.8 2.7 30 26-58 10-41 (195)
169 2g7s_A Transcriptional regulat 22.1 1.3E+02 0.0045 18.8 4.1 32 24-58 8-41 (194)
170 3egq_A TETR family transcripti 22.1 1E+02 0.0035 19.3 3.6 32 24-58 4-37 (170)
171 2hr3_A Probable transcriptiona 21.9 1.2E+02 0.0041 19.0 3.9 46 32-84 39-85 (147)
172 3him_A Probable transcriptiona 21.7 1.4E+02 0.0048 18.9 4.2 33 24-59 16-50 (211)
173 1on2_A Transcriptional regulat 21.7 92 0.0031 20.0 3.3 47 26-79 6-52 (142)
174 2fd5_A Transcriptional regulat 21.7 1.4E+02 0.0049 18.8 4.2 32 25-59 8-41 (180)
175 1zkd_A DUF185; NESG, RPR58, st 21.6 76 0.0026 26.0 3.5 27 28-54 6-32 (387)
176 2j5a_A 30S ribosomal protein S 21.6 87 0.003 21.0 3.3 34 17-50 16-50 (110)
177 1zk8_A Transcriptional regulat 21.3 1.1E+02 0.0038 19.3 3.6 31 25-58 9-41 (183)
178 3d1k_A Hemoglobin subunit alph 21.3 75 0.0026 21.1 2.9 45 19-63 92-140 (142)
179 1u5l_A Prion protein; pRNP, PR 21.2 1.7E+02 0.0059 20.8 4.9 36 45-80 59-99 (108)
180 2cyy_A Putative HTH-type trans 21.2 74 0.0025 21.1 2.9 46 30-82 9-54 (151)
181 3f6w_A XRE-family like protein 21.1 1.3E+02 0.0045 17.4 4.9 62 23-95 9-75 (83)
182 2yve_A Transcriptional regulat 21.1 1.2E+02 0.0042 19.6 3.9 31 25-58 5-37 (185)
183 2a61_A Transcriptional regulat 20.9 82 0.0028 19.7 2.9 44 32-82 37-80 (145)
184 2oqg_A Possible transcriptiona 20.7 58 0.002 20.1 2.1 42 31-80 24-65 (114)
185 3pt8_A Hemoglobin II; oxygen c 20.6 1.3E+02 0.0045 20.0 4.0 39 17-56 99-140 (152)
186 1gyx_A YDCE, B1461, hypothetic 20.5 92 0.0031 18.8 3.0 21 21-41 12-32 (76)
187 3bqz_B HTH-type transcriptiona 20.5 1.3E+02 0.0044 19.0 3.8 29 27-58 5-35 (194)
188 1x9f_B Erythrocruorin, globin 20.3 1.1E+02 0.0039 20.2 3.7 36 18-54 98-135 (145)
189 3hjl_A Flagellar motor switch 20.2 1.1E+02 0.0036 24.6 4.0 63 20-84 51-127 (329)
190 3cjd_A Transcriptional regulat 20.2 1.6E+02 0.0053 19.4 4.3 32 24-58 12-45 (198)
191 2dg7_A Putative transcriptiona 20.1 1.5E+02 0.0053 19.0 4.2 32 24-58 7-40 (195)
192 4a0z_A Transcription factor FA 20.1 47 0.0016 24.2 1.8 49 19-70 6-65 (190)
193 3eyi_A Z-DNA-binding protein 1 20.1 50 0.0017 22.2 1.8 44 30-79 12-55 (72)
No 1
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=82.70 E-value=2.4 Score=25.82 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=39.5
Q ss_pred HHHHHHHHHh--CCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 31 RVIFDIVKEH--GPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 31 r~l~dIvkeH--GPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
..|+++|.++ ||+|+.+.++.+++.+. ++ |+.=.-..|+.|.+...|+.+
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~-~i-s~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGE-EI-GLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTC-CC-CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCC-CC-CHhhHHHHHHHHHHCCCeEEE
Confidence 4578888877 79999999999988743 33 677778888889888887643
No 2
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=79.82 E-value=2.5 Score=27.89 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHhCCcchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGPLTV~~tW~h~ke~g~~ 58 (115)
.+-.++.+.|++.|+.+||+|+.+. +++.|++
T Consensus 7 ~~~~~~~~~IL~~Lk~~g~~ta~ei---A~~Lgit 38 (79)
T 1xmk_A 7 LDMAEIKEKICDYLFNVSDSSALNL---AKNIGLT 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEHHHH---HHHHCGG
T ss_pred ccchhHHHHHHHHHHHcCCcCHHHH---HHHcCCC
Confidence 3445778899999999999998764 5666765
No 3
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=77.12 E-value=8.4 Score=25.68 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=37.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhh
Q 042237 21 APPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQ 77 (115)
Q Consensus 21 ~p~eqa~titr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq 77 (115)
...+.-..+.+.|.+++++||++|+++-=+.. | .|..-.--+|..|-...
T Consensus 59 ~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~l---g----~sRK~ai~lLE~~Dr~g 108 (121)
T 2pjp_A 59 YRNDRIVEFANMIRDLDQECGSTCAADFRDRL---G----VGRKLAIQILEYFDRIG 108 (121)
T ss_dssp EEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHH---T----SCHHHHHHHHHHHHHHT
T ss_pred ECHHHHHHHHHHHHHHHHHCCCccHHHHHHHH---C----CcHHHHHHHHHHHhhcC
Confidence 45566677888999999999999999876655 3 45555557888885443
No 4
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=76.06 E-value=3.4 Score=23.75 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.7
Q ss_pred HHHHHHHhCCcchHhHHHHHHHhcc
Q 042237 33 IFDIVKEHGPLTVAETWERVQQAGV 57 (115)
Q Consensus 33 l~dIvkeHGPLTV~~tW~h~ke~g~ 57 (115)
|..++.++|++|+.+--+.+++.|.
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~~ 34 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDGY 34 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 5667889999999999999998754
No 5
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=75.14 E-value=6 Score=24.05 Aligned_cols=61 Identities=15% Similarity=0.289 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhccCCCcceeeeeccC
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFT 99 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~hvG~~k~FLyttw~~ 99 (115)
.+.++|-++||+|+++.-+++... .++ |+.-+..+|+=|.++..|...- .| +.|.|++-.+
T Consensus 13 ~vL~~L~~~~~~t~~ei~~~l~~~--~~~-s~~Tv~~~l~rL~~kGlv~r~~--~g--r~~~y~~~~~ 73 (82)
T 1p6r_A 13 EVMKVIWKHSSINTNEVIKELSKT--STW-SPKTIQTMLLRLIKKGALNHHK--EG--RVFVYTPNID 73 (82)
T ss_dssp HHHHHHHTSSSEEHHHHHHHHHHH--SCC-CHHHHHHHHHHHHHTTSEEEEE--ET--TEEEEEESCS
T ss_pred HHHHHHHcCCCCCHHHHHHHHhhc--CCc-cHHHHHHHHHHHHHCCCeEEEe--cC--CEEEEEeecC
Confidence 467788889999999999998762 233 6778888899999998887642 33 4788865433
No 6
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=68.72 E-value=5.4 Score=29.60 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=31.5
Q ss_pred HhHHHHHHHh-ccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 46 AETWERVQQA-GVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 46 ~~tW~h~ke~-g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
..||.+++.. |+.+..-..+=++.+.|+++|..|..+
T Consensus 71 ~~Tw~~~~~~lgl~~F~P~~QD~~A~~Li~~rgal~~i 108 (158)
T 1am7_A 71 SRXXDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMI 108 (158)
T ss_dssp HHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCcHHHH
Confidence 4699887755 999999999999999999999876554
No 7
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=68.33 E-value=3.1 Score=27.30 Aligned_cols=58 Identities=21% Similarity=0.483 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhC-CcchHhHHHHHHHh-----ccCCCCc-hhHHHHHHHHHHhhhHHHHhhhccCCC
Q 042237 29 ITRVIFDIVKEHG-PLTVAETWERVQQA-----GVSGLTG-KSHMKIVLRWMRERQKLRLICNHVGPH 89 (115)
Q Consensus 29 itr~l~dIvkeHG-PLTV~~tW~h~ke~-----g~~gL~S-K~HMKi~LrWMreRq~lkl~C~hvG~~ 89 (115)
+-..+.++|+++. ||+...+|+.|+.. .-..+++ -.-..++=..+ +.|+--|.|-.++
T Consensus 11 l~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~~E~eR~~lFeeYi---~~Lkekcsh~~~~ 75 (77)
T 2cqn_A 11 KESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFM---HVLEHECQHSGPS 75 (77)
T ss_dssp HHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCCCHHHHHHHHHHHH---HHHHHHHSCCCSS
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcCCHHHHHHHHHHHH---HHHHHHHcccCCC
Confidence 3446889999995 79999999999986 1223444 23444444454 5688889886543
No 8
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=66.62 E-value=12 Score=22.79 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhccCC
Q 042237 31 RVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGP 88 (115)
Q Consensus 31 r~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~hvG~ 88 (115)
+.|++.|.++||+|+++.=+ ..|+ |+.=....|+-|.+...|.......|.
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~---~lgv----s~~tv~r~L~~L~~~GlI~~~~~~~gr 53 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAE---ALAV----TDYQARYYLLLLEKAGMVQRSPLRRGM 53 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHH---HHTS----CHHHHHHHHHHHHHHTSEEEECCSSSS
T ss_pred HHHHHHHHHcCCCCHHHHHH---HHCc----CHHHHHHHHHHHHHCCCEEEeccCCCC
Confidence 46888999999999987644 4455 466677778888888877654443333
No 9
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=64.32 E-value=6.5 Score=27.13 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 31 RVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 31 r~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
++|+++|.+++++|+.+.++.+++.+-+ -|..=--.-|..+-+...|+.+-
T Consensus 22 ~~Il~~l~~~~h~ta~ei~~~l~~~~~~--is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 22 QLVLEAVDTLEHATPDDILGEVRKTASG--INISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHHTTCTT--CCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhCCC--CCHhHHHHHHHHHHHCCcEEEEE
Confidence 4577888888899999999999987532 25566677888999988877654
No 10
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=59.36 E-value=18 Score=21.60 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhccCCCcceeeee
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTT 96 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~hvG~~k~FLytt 96 (115)
.|+.+|.++||+|+++.=+.+ |+ |+.-.-..|+=|.++..|....+- +....++|.|
T Consensus 24 ~il~~l~~~~~~s~~ela~~l---~i----s~~tv~~~l~~L~~~glv~~~~~~-~~r~~~~~~t 80 (109)
T 1sfx_A 24 RIYSLLLERGGMRVSEIAREL---DL----SARFVRDRLKVLLKRGFVRREIVE-KGWVGYIYSA 80 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHH---TC----CHHHHHHHHHHHHHTTSEEEEEEE-SSSEEEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CC----CHHHHHHHHHHHHHCCCEEEEeec-CCceEEEEec
Confidence 467788889999999874443 54 467788888888888887765544 4445555544
No 11
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=58.27 E-value=15 Score=23.16 Aligned_cols=59 Identities=10% Similarity=0.164 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhccCCCcceeeeec
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTW 97 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~hvG~~k~FLyttw 97 (115)
.+..+|.++||+|+++.-+.+..- .++ |+.-+..+|+=|-++..|...-+ | +.+.|...
T Consensus 14 ~vL~~l~~~~~~t~~ela~~l~~~--~~~-s~~tv~~~l~~L~~~Glv~r~~~--~--rr~~~~~l 72 (123)
T 1okr_A 14 EVMNIIWMKKYASANNIIEEIQMQ--KDW-SPKTIRTLITRLYKKGFIDRKKD--N--KIFQYYSL 72 (123)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHHHH--CCC-CHHHHHHHHHHHHHHTSEEEEEE--T--TEEEEEES
T ss_pred HHHHHHHhCCCcCHHHHHHHHhcc--CCC-cHhhHHHHHHHHHHCCCeEEEec--C--CeEEEEEe
Confidence 466777789999999998887642 222 67888999999999988876644 3 45555443
No 12
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=56.03 E-value=14 Score=31.00 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=27.4
Q ss_pred ccCCCChhHHHHHHHHHHHHHH-----HhCCcchHhHHHHHH
Q 042237 17 IELKAPPEQTQTITRVIFDIVK-----EHGPLTVAETWERVQ 53 (115)
Q Consensus 17 i~~k~p~eqa~titr~l~dIvk-----eHGPLTV~~tW~h~k 53 (115)
..+..|-.+|+..|..|.++|+ ..||||+++-.+.+=
T Consensus 45 ~~lp~p~~~~~~~s~~L~~~i~~~I~~~~GpI~fa~yM~~aL 86 (432)
T 4f3n_A 45 ASLPVPGPDALAQSEALAASLRAEIASAGGWIPFSRYMERVL 86 (432)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHHHHTTSCEEHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHhCCCeeHHHHHHHHh
Confidence 4566777778888777666544 379999999998874
No 13
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=53.09 E-value=3.1 Score=31.07 Aligned_cols=27 Identities=22% Similarity=0.492 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHhCCcchHhHHH
Q 042237 24 EQTQTITRVIFDIVKEHGPLTVAETWE 50 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGPLTV~~tW~ 50 (115)
|.=...++.--.|++|||.|.|-+||.
T Consensus 41 eaY~~~A~~a~~vfke~GAl~~vEcWg 67 (141)
T 2okq_A 41 DAYREMAAKAAPLFKEFGALRIVECWA 67 (141)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCeeeeeeec
Confidence 334456777889999999999999994
No 14
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=52.78 E-value=20 Score=25.77 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHhC-------Ccc------hHhHHHHHHHh
Q 042237 24 EQTQTITRVIFDIVKEHG-------PLT------VAETWERVQQA 55 (115)
Q Consensus 24 eqa~titr~l~dIvkeHG-------PLT------V~~tW~h~ke~ 55 (115)
++-..|++.|-++++.+| |.| +.+.|+.+++.
T Consensus 69 ~~i~~i~~el~~~~~~~~~~~~~~npYT~it~~~l~~~W~~l~~l 113 (129)
T 1wlx_A 69 EAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQL 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCSSSCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCCCCccchHHHHHHHHHHHHHH
Confidence 455678899999999999 777 68999999873
No 15
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=52.20 E-value=12 Score=24.08 Aligned_cols=27 Identities=4% Similarity=0.124 Sum_probs=23.5
Q ss_pred CChhHHHHHHHHHHHHHHHhCCcchHh
Q 042237 21 APPEQTQTITRVIFDIVKEHGPLTVAE 47 (115)
Q Consensus 21 ~p~eqa~titr~l~dIvkeHGPLTV~~ 47 (115)
.++.|.+++.+.+.+|+...+|+|=-.
T Consensus 2 ~~~~E~e~Lg~iv~eil~~g~~vsnKa 28 (64)
T 2oxl_A 2 LLEEESAVLGQAVTNLMLSGDNVNNKN 28 (64)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred cchhHHHHHHHHHHHHHHcCCCCcHHH
Confidence 368899999999999999999998443
No 16
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=51.59 E-value=11 Score=25.79 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHH
Q 042237 29 ITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRL 81 (115)
Q Consensus 29 itr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl 81 (115)
+-+.|+..|+++||+|+++--+.+ +.|+ |.....--|+-+.+.-.|..
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~~l-~~gi----S~~aVs~rL~~Le~~GLV~~ 61 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELEDRD-EIRI----SKSSVSRRLKKLADHDLLQP 61 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHTST-TCCS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-hcCC----CHHHHHHHHHHHHHCCCEEe
Confidence 348899999999999999875422 0033 45666667777777766654
No 17
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Probab=51.41 E-value=6.5 Score=28.68 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=26.8
Q ss_pred CChhHHHHHHHHHHH----HHHHhCCcchH------hHHHHHHH
Q 042237 21 APPEQTQTITRVIFD----IVKEHGPLTVA------ETWERVQQ 54 (115)
Q Consensus 21 ~p~eqa~titr~l~d----IvkeHGPLTV~------~tW~h~ke 54 (115)
.-.|.++.|++.|-+ |++.||+++++ ++++.+-.
T Consensus 128 g~~ela~~i~~~l~~~~avll~nHG~~~~G~~~~~~~~~~eA~~ 171 (200)
T 2fk5_A 128 ATEEAALSVAEALREHRACLLRGHGAFAVGLKEAPEEALLEAYG 171 (200)
T ss_dssp SSHHHHHHHHHHHHHCSEEEETTTEEEEEECCSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCcCCEEEECCCCcEEEeCCCCCcCcHHHHHH
Confidence 345778888888765 57899999999 89887765
No 18
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=51.37 E-value=30 Score=22.17 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCChhHH-HHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 20 KAPPEQT-QTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 20 k~p~eqa-~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+.+.+++ +.|-.+..+++.++|. +||.+. ++++|++
T Consensus 9 ~~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~I---a~~agvs 47 (203)
T 3f1b_A 9 RLPRAVREQQMLDAAVDVFSDRGFHETSMDAI---AAKAEIS 47 (203)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCTTTCCHHHH---HHHTTSC
T ss_pred CCChHHHHHHHHHHHHHHHHHcCcccccHHHH---HHHhCCc
Confidence 3445555 6799999999999995 898875 6777776
No 19
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic mechanism; 2.40A {Aquifex aeolicus}
Probab=50.83 E-value=3.6 Score=29.74 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHH-------HHHHhCCcchHhHHHHHHH
Q 042237 24 EQTQTITRVIFD-------IVKEHGPLTVAETWERVQQ 54 (115)
Q Consensus 24 eqa~titr~l~d-------IvkeHGPLTV~~tW~h~ke 54 (115)
|-++.|+++|-+ |++.||+++++.+++.+-.
T Consensus 151 ~La~~i~~~l~~~~~~~avll~nHG~~~~G~~~~eA~~ 188 (208)
T 2irp_A 151 LLAKEVENYFKTSEDKYGFLIRGHGLYTWGRSMEEALI 188 (208)
T ss_dssp HHHHHHHHHHHHCSCCSCEEETTTEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEcCCCCeEecCCHHHHHH
Confidence 346667777754 4789999999999887765
No 20
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=50.59 E-value=14 Score=24.85 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=38.3
Q ss_pred HHHHHHHHHh--CCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 31 RVIFDIVKEH--GPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 31 r~l~dIvkeH--GPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
++|+++|.++ +|+|+.+.++.+++.+-+ -|..=.-.-|+.|.+--.|+.+-
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~--is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGED--VGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCC--CCHHHHHHHHHHHHHCCcEEEEE
Confidence 3567777764 799999999999987532 25566677788888888877554
No 21
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=50.58 E-value=13 Score=25.36 Aligned_cols=52 Identities=10% Similarity=0.168 Sum_probs=39.8
Q ss_pred HHHHHHHHH-hCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhh
Q 042237 31 RVIFDIVKE-HGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICN 84 (115)
Q Consensus 31 r~l~dIvke-HGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~ 84 (115)
++|+++|.+ ++|+|+.+.++.+++.+-+ -|..=.-..|..|-+...|+.+-.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~--is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDA--VGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHCCCEEEEEc
Confidence 457888877 5899999999999986432 255666778899999988876643
No 22
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=50.26 E-value=9.6 Score=24.62 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 30 TRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 30 tr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
-+.|.+.|++||.+||++- +++.|++ ..=.+.+|.-+-++..|+.+
T Consensus 4 L~~Il~~L~~~g~vsv~eL---a~~l~VS----~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQI---SQTLNTP----QPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHH---HHHTTCC----HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCcHHHH---HHHHCcC----HHHHHHHHHHHHHCCCEEEe
Confidence 3678999999999999985 4455655 45567777777777777665
No 23
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=50.08 E-value=17 Score=25.06 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=38.2
Q ss_pred HHHHHHHH-hCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 32 VIFDIVKE-HGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 32 ~l~dIvke-HGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
.|+++|.+ ++|+|+.+.++.+++.+-+ -|..=--..|+.+-+.-.|+.+-
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~--is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKN--TSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTT--CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC--CCHhhHHHHHHHHHHCCcEEEEE
Confidence 57788876 4899999999999987532 25556677888888888877653
No 24
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.15 E-value=15 Score=25.15 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=36.6
Q ss_pred HHHHHHHH-hCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 32 VIFDIVKE-HGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 32 ~l~dIvke-HGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
.|+++|.+ ++|+|+.+.++.+++.+-+ + |..=--..|+.+.+--.|+.+-
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~-i-s~aTVYR~L~~L~e~Glv~~~~ 76 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPN-M-SVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTT-C-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC-C-ChhhHHHHHHHHHHCCCEEEEe
Confidence 46777765 6899999999999887432 2 4555666788888888776553
No 25
>2xki_A Neural hemoglobin; oxygen storage, metal-binding; HET: HEM SO4; 1.30A {Cerebratulus lacteus} PDB: 1kr7_A* 1v07_A* 2xkg_A* 2xkh_A* 2vyz_A* 2vyy_A*
Probab=48.79 E-value=20 Score=23.54 Aligned_cols=36 Identities=6% Similarity=0.117 Sum_probs=30.3
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHhCCcchHhHHHHH
Q 042237 17 IELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERV 52 (115)
Q Consensus 17 i~~k~p~eqa~titr~l~dIvkeHGPLTV~~tW~h~ 52 (115)
....+.+++=..+...|...|++|++=.+...|+..
T Consensus 71 ~~~gV~~~~F~~~~~~Ll~~L~~~~~~~~~~a~~k~ 106 (110)
T 2xki_A 71 KGRNVGSAEFHNAKACLAKACSAHGAPDLGHAIDDI 106 (110)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 345789999999999999999999887777888764
No 26
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=48.58 E-value=32 Score=22.09 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=33.4
Q ss_pred HHHHHHHHHHh------CCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhccCCCcc
Q 042237 30 TRVIFDIVKEH------GPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQ 91 (115)
Q Consensus 30 tr~l~dIvkeH------GPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~hvG~~k~ 91 (115)
-+.|++.|+++ ||.||.|. ++..|+|. .=.+.-|.-+-+.-.|+..-.--|..++
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EI---a~~lgvS~----~TVrr~L~~Le~kG~I~R~~ggr~~~~~ 66 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDI---ADAAGLSI----YQVRLYLEQLHDVGVLEKVNAGKGVPGL 66 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHH---HHHHTCCH----HHHHHHHHHHHHTTSEEEESCSSSSCCE
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHH---HHHHCCCH----HHHHHHHHHHHHCCcEEecCCCCCcHHH
Confidence 45678888887 99999976 44556652 2245555566666666554433333333
No 27
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=48.42 E-value=11 Score=25.04 Aligned_cols=58 Identities=16% Similarity=0.313 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhccCCCcceeeee
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTT 96 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~hvG~~k~FLytt 96 (115)
.|.++|-++||+|+.+.-+.+.+. .++ |+.-+..+|.=|-++..|+..- ..+.|+|++
T Consensus 39 ~VL~~L~~~~~~t~~eL~~~l~~~--~~~-s~sTVt~~L~rLe~KGlV~R~~----~gR~~~Y~p 96 (99)
T 2k4b_A 39 IVMRVIWSLGEARVDEIYAQIPQE--LEW-SLATVKTLLGRLVKKEMLSTEK----EGRKFVYRP 96 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHTCCGG--GCC-CHHHHHHHHHHHHHTTSCEEEE----ETTEEEEEC
T ss_pred HHHHHHHhCCCCCHHHHHHHHhcc--cCC-CHhhHHHHHHHHHHCCCEEEEe----CCCEEEEEE
Confidence 467788889999999987776542 122 5677888899899888877642 245788865
No 28
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=48.09 E-value=23 Score=25.01 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchh----HHHHHHHHHHhhh----HHHHhhhccCCC
Q 042237 26 TQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKS----HMKIVLRWMRERQ----KLRLICNHVGPH 89 (115)
Q Consensus 26 a~titr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~----HMKi~LrWMreRq----~lkl~C~hvG~~ 89 (115)
..|+=+.|.++|.+ +|+|+.+. ++..|+.|+..|. |.+-+-|=++..- +.--.|.--|..
T Consensus 9 ~~T~Re~Ii~lL~~-~plta~ei---~~~l~i~~~~~ke~Vy~hLeHIaksl~r~g~~L~v~p~~C~~CG~~ 76 (105)
T 2gmg_A 9 SATRREKIIELLLE-GDYSPSEL---ARILDMRGKGSKKVILEDLKVISKIAKREGMVLLIKPAQCRKCGFV 76 (105)
T ss_dssp HHHHHHHHHHHTTT-SCBCTTHH---HHSSCCCSSCCHHHHHHHHHHHHHHHTTTTEEEEECCCBBTTTCCB
T ss_pred cccHHHHHHHHHHc-CCCCHHHH---HHHhCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEECcChhhCcCe
Confidence 35777899999985 99999974 6777999888888 6666655554321 223457666654
No 29
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=47.71 E-value=21 Score=26.10 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=36.6
Q ss_pred HHHHHH---HHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhccCCCcceeeee
Q 042237 27 QTITRV---IFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTT 96 (115)
Q Consensus 27 ~titr~---l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~hvG~~k~FLytt 96 (115)
..+|++ ++.||.-|+|+|-++. ..+.|++|..+++-++ +|..++-.-...++..-.+|.|
T Consensus 90 ~~LS~aaLEtLaiIay~qPiTR~eI------~~irGv~~~~~v~~L~----e~glI~e~g~~~~~GRp~ly~t 152 (162)
T 1t6s_A 90 RRLSRSMLEVLAVVAWHQPVTKGEI------QQIRGASPDYSIDRLL----ARGLIEVRGRADSPGRPLQYGT 152 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCSEEHHHH------HHHHTCCCCSHHHHHH----HTTSEEEEEECSSTTCCEEEEE
T ss_pred CccCHHHHHHHHHHHHcCCcCHHHH------HHHHCCCHHHHHHHHH----HCCCEEEccccCCCCCCeEEEE
Confidence 345554 5789999999998764 3566777888877665 5555543322221222566644
No 30
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=46.37 E-value=31 Score=22.46 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhccCCCccee
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFL 93 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~hvG~~k~FL 93 (115)
.|+.+|.++||+|+++.=+. .|+ |+.-+-.+|+-|.++..|...-+-.+....++
T Consensus 56 ~iL~~l~~~~~~t~~ela~~---l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~ 110 (162)
T 3cjn_A 56 RALAILSAKDGLPIGTLGIF---AVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRV 110 (162)
T ss_dssp HHHHHHHHSCSEEHHHHHHH---HTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEE
T ss_pred HHHHHHHHCCCCCHHHHHHH---HCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEE
Confidence 35667778999999887443 344 47888889999999888776544333333443
No 31
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=46.20 E-value=18 Score=25.45 Aligned_cols=52 Identities=15% Similarity=0.230 Sum_probs=38.6
Q ss_pred HHHHHHHHHh-CCcchHhHHHHHHHh--ccCCCCchhHHHHHHHHHHhhhHHHHhhh
Q 042237 31 RVIFDIVKEH-GPLTVAETWERVQQA--GVSGLTGKSHMKIVLRWMRERQKLRLICN 84 (115)
Q Consensus 31 r~l~dIvkeH-GPLTV~~tW~h~ke~--g~~gL~SK~HMKi~LrWMreRq~lkl~C~ 84 (115)
++|+++|.++ +|+|+.+.++.+++. +-+ + |..=--.-|..+-+-..|+.+-.
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~-i-s~aTVYRtL~~L~e~Glv~~i~~ 90 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLN-V-GIATVYRTLNLLEEAEMVTSISF 90 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGC-C-CHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCC-C-CHHHHHHHHHHHHHCCCEEEEEe
Confidence 4577877764 899999999999987 432 2 45556677888988888876644
No 32
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=46.10 E-value=10 Score=25.32 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhccCCCcc
Q 042237 25 QTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQ 91 (115)
Q Consensus 25 qa~titr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~hvG~~k~ 91 (115)
+.++..+.|.++|+++| +|+.+. +++.|++ |.-....|.=|.+- -+++...|.+++
T Consensus 14 ~~~~~~~~IL~lL~~~g-~sa~eL---Ak~LgiS----k~aVr~~L~~Le~e---G~I~~~~~~PP~ 69 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG-ATAAQL---TRQLNME----KREVNKALYDLQRS---AMVYSSDDIPPR 69 (82)
T ss_dssp CSHHHHHHHHHHHSSST-EEHHHH---HHHSSSC----HHHHHHHHHHHHHH---TSSEECSSSSCE
T ss_pred chHHHHHHHHHHHHHcC-CCHHHH---HHHHCcC----HHHHHHHHHHHHHC---CCEEeCCCCCCc
Confidence 46788899999999999 998864 7777876 33333333323222 345566777664
No 33
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=46.03 E-value=21 Score=23.86 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=38.3
Q ss_pred HHHHHHHHH-hCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 31 RVIFDIVKE-HGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 31 r~l~dIvke-HGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
++|+++|.+ ++|+|+.+.++.+++.+- ++ |+.=--..|+.|.+.-.|+.+-
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~-~i-s~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGE-NI-GLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTC-CC-CHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCC-CC-CHhhHHHHHHHHHHCCCEEEEE
Confidence 356777765 579999999999998743 22 5666777888898888877653
No 34
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=45.54 E-value=26 Score=22.21 Aligned_cols=40 Identities=13% Similarity=0.235 Sum_probs=29.5
Q ss_pred HHHHHHhCCcchHh----HHHHHHHhccCCCCchhHHHHHHHHHHhhhH
Q 042237 34 FDIVKEHGPLTVAE----TWERVQQAGVSGLTGKSHMKIVLRWMRERQK 78 (115)
Q Consensus 34 ~dIvkeHGPLTV~~----tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~ 78 (115)
.+++.+|| ++... +.+.+++.||. + -|-|.+|+...+|+.
T Consensus 18 ~~~F~~~~-id~e~l~~lt~~DL~~lGI~-~---G~RkkIl~ai~~~~~ 61 (74)
T 3k1r_B 18 AALLRQEK-IDLEALMLCSDLDLRSISVP-L---GPREKILGAVRRRRQ 61 (74)
T ss_dssp HHHHHHTT-CCHHHHTTCCHHHHHHTTCC-H---HHHHHHHHHHHHHHH
T ss_pred HHHHHHcC-cCHHHHhHCCHHHHHHcCCC-c---chHHHHHHHHHHHHH
Confidence 46677777 55443 46778888877 4 699999999988853
No 35
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=44.95 E-value=30 Score=23.32 Aligned_cols=38 Identities=24% Similarity=0.443 Sum_probs=31.3
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHhCCcc--hHhHHHHHHH
Q 042237 17 IELKAPPEQTQTITRVIFDIVKEHGPLT--VAETWERVQQ 54 (115)
Q Consensus 17 i~~k~p~eqa~titr~l~dIvkeHGPLT--V~~tW~h~ke 54 (115)
....+.||+=..+...|.+.|+++-+.| +.+.|+.+=.
T Consensus 97 ~~~gV~p~~f~~~~~~Ll~~l~~~lg~t~e~~~AW~~~~~ 136 (153)
T 2bk9_A 97 IPRTVSKESYNQLKGVILDVLTAASSLDESQAATWAKLVD 136 (153)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3457899999999999999999997776 6778887644
No 36
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.76 E-value=18 Score=24.92 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=38.5
Q ss_pred HHHHHHHHHh--CCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 31 RVIFDIVKEH--GPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 31 r~l~dIvkeH--GPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
++|+++|.++ +|+|+.+.++.+++.+-+ -|..=.-..|+.|.+.-.|+.+-
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~--is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEE--IGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHCCcEEEEE
Confidence 3567777654 799999999999987532 25566677888999988887654
No 37
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=44.29 E-value=12 Score=24.90 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 31 RVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 31 r~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
+.|.+.|+++|.+||++- +++.|++ ..=.+.+|.-+-++..|+.+
T Consensus 5 ~~Il~~L~~~g~vsv~eL---A~~l~VS----~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQL---SARLQTP----QPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHHSCSEEHHHH---HHHTTCC----HHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHcCCCcHHHH---HHHHCcC----HHHHHHHHHHHHHCCCEEEE
Confidence 568999999999999984 4555665 34466677777676666665
No 38
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=43.83 E-value=33 Score=22.51 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=32.0
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhCC-cc--hHhHHHHHHHhc
Q 042237 18 ELKAPPEQTQTITRVIFDIVKEHGP-LT--VAETWERVQQAG 56 (115)
Q Consensus 18 ~~k~p~eqa~titr~l~dIvkeHGP-LT--V~~tW~h~ke~g 56 (115)
.+.+.||+=..+...|...|+++|+ .| |.+.|+.+=..-
T Consensus 83 ~~gV~p~~f~~~~~~Ll~~l~~lg~~~t~e~~~AW~~~~~~~ 124 (134)
T 1tu9_A 83 ALDIRPELYDLWLDALLMAVAEHDRDCDAETRDAWRDVMGRG 124 (134)
T ss_dssp TTCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999996 23 567898776543
No 39
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=43.66 E-value=47 Score=21.25 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHH
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRL 81 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl 81 (115)
.++.+|.++||+|+++.=+.+ |+ |+.-+-.+++-|-++..|..
T Consensus 45 ~iL~~l~~~~~~t~~eLa~~l---~~----~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 45 AMINVIYSTPGISVADLTKRL---II----TGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHSTTEEHHHHHHHH---TC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHH---CC----CHHHHHHHHHHHHHCCCEEe
Confidence 356677889999999865544 44 57888889999999887765
No 40
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=43.35 E-value=29 Score=21.63 Aligned_cols=44 Identities=11% Similarity=0.254 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
.++.+|.++||+|+++.= +..|+ |+.-+-.+++-|.++..+...
T Consensus 37 ~iL~~l~~~~~~~~~ela---~~l~~----~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 37 GVIQVLAKSGKVSMSKLI---ENMGC----VPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHHSCSEEHHHHH---HHCSS----CCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCcCHHHHH---HHHCC----ChhHHHHHHHHHHHCCCeeec
Confidence 366677889999999863 34454 466777788888888777654
No 41
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=41.35 E-value=38 Score=25.36 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=27.1
Q ss_pred HHHHHHHh-CCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhh
Q 042237 33 IFDIVKEH-GPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICN 84 (115)
Q Consensus 33 l~dIvkeH-GPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~ 84 (115)
|||+|.++ ||+|+++- ++..|++ -.+-..+-||||-=-.+.+++.
T Consensus 41 if~~L~~~~~~~t~~el---a~~~~~~----~~~~~~l~rlLr~L~~~gll~~ 86 (352)
T 1fp2_A 41 IPNIIQNHGKPISLSNL---VSILQVP----SSKIGNVRRLMRYLAHNGFFEI 86 (352)
T ss_dssp HHHHHHHHTSCEEHHHH---HHHHTCC----GGGHHHHHHHHHHHHHTTSEEE
T ss_pred hhhhhhhcCCCccHHHH---HHHhCcC----CCChHHHHHHHHHHHhCCeEEE
Confidence 68999988 49999963 5555652 2334455556554444444443
No 42
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=41.25 E-value=46 Score=21.48 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=27.9
Q ss_pred CChhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 21 APPEQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 21 ~p~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
-+.+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 11 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~I---A~~agvs 47 (212)
T 3knw_A 11 KSEAKRQHILDSGFHLVLRKGFVGVGLQEI---LKTSGVP 47 (212)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCSTTCCHHHH---HHHHTCC
T ss_pred cchhhHHHHHHHHHHHHHHcCCccCCHHHH---HHHhCCC
Confidence 3446678899999999999996 888875 7777876
No 43
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=41.18 E-value=22 Score=23.16 Aligned_cols=27 Identities=22% Similarity=0.585 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCcchHhHHHHHHHh
Q 042237 28 TITRVIFDIVKEHGPLTVAETWERVQQA 55 (115)
Q Consensus 28 titr~l~dIvkeHGPLTV~~tW~h~ke~ 55 (115)
-+-....++|++++ |+-.-+|..|+..
T Consensus 18 k~~~~F~~mL~e~~-I~~~s~W~~~~~~ 44 (83)
T 2doe_A 18 KIKSDFFELLSNHH-LDSQSRWSKVKDK 44 (83)
T ss_dssp HHHHHHHHHHHHTT-CCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CCCCCcHHHHHHH
Confidence 45567899999999 9999999999987
No 44
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=41.15 E-value=32 Score=26.15 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=23.7
Q ss_pred HHHHHHH-hCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhh
Q 042237 33 IFDIVKE-HGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRER 76 (115)
Q Consensus 33 l~dIvke-HGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreR 76 (115)
|||+|.+ .||+|+++- ++..|++ .+.+..+|+=+-..
T Consensus 40 ifd~L~~~~~~~t~~eL---A~~~g~~----~~~l~rlLr~l~~~ 77 (363)
T 3dp7_A 40 IFQLLSGKREGYTLQEI---SGRTGLT----RYAAQVLLEASLTI 77 (363)
T ss_dssp HHHHHHTCTTCBCHHHH---HHHHTCC----HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHH---HHHhCcC----HHHHHHHHHHHhhC
Confidence 7899998 589999985 5555654 33444444443333
No 45
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=41.13 E-value=28 Score=24.55 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhC-CcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHH
Q 042237 27 QTITRVIFDIVKEHG-PLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKL 79 (115)
Q Consensus 27 ~titr~l~dIvkeHG-PLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~l 79 (115)
+.|-..|.+.++++| |.|+.+.=+ +.|++ |.+ ....|+=|.+.-.|
T Consensus 8 ~~il~~I~~~~~~~g~~~s~~eia~---~lgl~---~~t-v~~~l~~Le~~G~i 54 (196)
T 3k2z_A 8 RKVLLFIEEFIEKNGYPPSVREIAR---RFRIT---PRG-ALLHLIALEKKGYI 54 (196)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHH---HHTSC---HHH-HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHH---HcCCC---cHH-HHHHHHHHHHCCCE
Confidence 456677888889999 999998744 44554 554 55566666555443
No 46
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=40.80 E-value=33 Score=25.76 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=27.5
Q ss_pred HHHHHHHHhC-CcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhc
Q 042237 32 VIFDIVKEHG-PLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNH 85 (115)
Q Consensus 32 ~l~dIvkeHG-PLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~h 85 (115)
-|||+|.++| |+|+++- ++..|+. ...-..+-||||-=-.+.+++..
T Consensus 34 gif~~L~~~~~~~t~~eL---A~~~g~~----~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 34 GIADAIHNHGKPMTLSEL---ASSLKLH----PSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp THHHHHHHHTSCEEHHHH---HHHTTCC----TTTHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHhHHhhcCCCcCHHHH---HHhcCCC----CcchHHHHHHHHHHhhCCcEEEe
Confidence 3799999985 9999963 5555652 11234455555544444444433
No 47
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=39.44 E-value=50 Score=21.37 Aligned_cols=44 Identities=23% Similarity=0.156 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
.|+..|.++||+|+++.=+ ..|+ |+.-+-.+++-|.++..|...
T Consensus 48 ~iL~~l~~~~~~t~~ela~---~l~i----s~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 48 YAFLYVALFGPKKMKEIAE---FLST----TKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHCCBCHHHHHH---HTTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHH---HHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 4667788899999998743 3344 577888889999888777654
No 48
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=39.04 E-value=29 Score=25.26 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=24.4
Q ss_pred HHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHH
Q 042237 33 IFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKL 79 (115)
Q Consensus 33 l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~l 79 (115)
|||+|.+ ||+|+++- ++..|++ .+-+..+|+-+.....|
T Consensus 31 i~~~l~~-~~~t~~el---a~~~~~~----~~~l~r~L~~L~~~g~l 69 (335)
T 2r3s_A 31 VFTAISQ-GIESSQSL---AQKCQTS----ERGMRMLCDYLVIIGFM 69 (335)
T ss_dssp HHHHHTT-SEECHHHH---HHHHTCC----HHHHHHHHHHHHHTTSE
T ss_pred hHHHHhc-CCCCHHHH---HHHhCCC----chHHHHHHHHHHhcCCe
Confidence 6888887 99999863 5555654 44455555555444444
No 49
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=38.98 E-value=23 Score=26.45 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=35.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHH
Q 042237 21 APPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKL 79 (115)
Q Consensus 21 ~p~eqa~titr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~l 79 (115)
...+.-..+.+.|.+++ +||++||++.=+.. |+ |..-.--+|.+|-.....
T Consensus 196 ~~~~~~~~~~~~l~~~~-~~~~it~a~~Rd~l---g~----SRK~aIplLE~~Dr~g~T 246 (258)
T 1lva_A 196 WHRQALGEAREVIKNLA-STGPFGLAEARDAL---GS----SRKYVLPLLEYLDQVKFT 246 (258)
T ss_dssp EEHHHHHHHHHHHHHHH-TTSCBCHHHHHHHH---TC----CHHHHHHHHHHHHHTTSE
T ss_pred EcHHHHHHHHHHHHHHH-hcCCcCHHHHHHHh---CC----cHHHHHHHHHHHhhcCce
Confidence 45666777888889999 99999998754433 43 345555778887544433
No 50
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=38.62 E-value=48 Score=20.50 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHH
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIV 69 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~ 69 (115)
.|...|. .||+|+++--+.+ |++-=+=-+|++.|
T Consensus 27 ~Il~~L~-~~~~~~~ela~~l---~is~~tvs~~L~~L 60 (102)
T 3pqk_A 27 MLVCTLV-EGEFSVGELEQQI---GIGQPTLSQQLGVL 60 (102)
T ss_dssp HHHHHHH-TCCBCHHHHHHHH---TCCTTHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHH---CcCHHHHHHHHHHH
Confidence 3556664 4999999865444 66654445565554
No 51
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=37.94 E-value=36 Score=25.50 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICN 84 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~ 84 (115)
-|||+|.+ ||+|+++- ++..|++ -..+-||||-=-.+.+++.
T Consensus 55 gif~~L~~-~~~t~~eL---A~~~g~~-------~~~l~rlLr~L~~~gll~~ 96 (359)
T 1x19_A 55 DLFSHMAE-GPKDLATL---AADTGSV-------PPRLEMLLETLRQMRVINL 96 (359)
T ss_dssp THHHHHTT-CCBCHHHH---HHHHTCC-------HHHHHHHHHHHHHTTSEEE
T ss_pred CcHHHHcC-CCCCHHHH---HHHhCcC-------hHHHHHHHHHHHhCCCeEe
Confidence 36888876 99999853 4555654 3445555554444444433
No 52
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=37.92 E-value=45 Score=21.95 Aligned_cols=59 Identities=10% Similarity=0.120 Sum_probs=42.0
Q ss_pred HHHHHHHHHhC-C-cchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh-hccCCCcceeeee
Q 042237 31 RVIFDIVKEHG-P-LTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC-NHVGPHKQFLYTT 96 (115)
Q Consensus 31 r~l~dIvkeHG-P-LTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C-~hvG~~k~FLytt 96 (115)
..|+.+|.++| | +|+++.-+.+ |+ |+.-.-..|+-|.++-.|...- ...+....|.|.+
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l---~~----s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~ 90 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSL---KL----DVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKI 90 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHH---TS----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHH---Cc----CHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEec
Confidence 35777887776 4 9999986655 43 7888888899999998887653 3334446677765
No 53
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=37.88 E-value=39 Score=21.78 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhC---CcchHhHHHHHHHhccC
Q 042237 29 ITRVIFDIVKEHG---PLTVAETWERVQQAGVS 58 (115)
Q Consensus 29 itr~l~dIvkeHG---PLTV~~tW~h~ke~g~~ 58 (115)
+-+.|+++|+++| ++|+++. +++.|++
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eL---A~~Lgvs 40 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDL---SGKLGTP 40 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHH---HHHHTCC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHH---HHHHCcC
Confidence 4577999999999 8999875 6666765
No 54
>2z7b_A MLR6791 protein; class II aldolase superfamily, lyase; 1.90A {Mesorhizobium loti}
Probab=37.51 E-value=5 Score=30.81 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHH----HHHHhCCcchHhHHHHHHH
Q 042237 23 PEQTQTITRVIFD----IVKEHGPLTVAETWERVQQ 54 (115)
Q Consensus 23 ~eqa~titr~l~d----IvkeHGPLTV~~tW~h~ke 54 (115)
.|.+..|++.|-+ |++.||++|++++++.+-.
T Consensus 178 ~ela~~ia~~l~~~~avLL~nHG~~~~G~tl~eA~~ 213 (270)
T 2z7b_A 178 PDVCADIAESLGSQTVVLMARHGVVNVGKSVREVVF 213 (270)
T ss_dssp HHHHHHHHHHHTTSSEEEETTTEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhccCCEEEEcCCceEEEeCCHHHHHH
Confidence 3677888888754 5789999999998887654
No 55
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron}
Probab=37.51 E-value=4.8 Score=29.34 Aligned_cols=32 Identities=16% Similarity=0.559 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHH----HHHHhCCcchHhHHHHHHH
Q 042237 23 PEQTQTITRVIFD----IVKEHGPLTVAETWERVQQ 54 (115)
Q Consensus 23 ~eqa~titr~l~d----IvkeHGPLTV~~tW~h~ke 54 (115)
.|.++.|++.|-+ |++.||.++++++++.+-.
T Consensus 137 ~~la~~i~~~l~~~~avll~nHG~~~~G~t~~eA~~ 172 (212)
T 2opi_A 137 PELAKAVVEAMLKHNSVLLTNHGQVVCGKDFDQVYE 172 (212)
T ss_dssp HHHHHHHHHHTSSCSEEEETTTEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhccCCEEEEcCCCcEEEcCCHHHHHH
Confidence 3566666666533 5678999999999888765
No 56
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=37.08 E-value=36 Score=21.26 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
.++..|.++||+|+++.=+.+ |+ |+.-+-.+++-|.++..|...-
T Consensus 33 ~iL~~l~~~~~~~~~ela~~l---~~----s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 33 ACLLRIHREPGIKQDELATFF---HV----DKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHSTTCBHHHHHHHH---TC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CC----CHHHHHHHHHHHHHCCCEEeec
Confidence 356677789999999875543 44 5788888999999988776543
No 57
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=36.97 E-value=30 Score=21.63 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
.++..|.++||+|+++. ++..|+ |+.-+-.+++-|.++..|...
T Consensus 40 ~iL~~l~~~~~~t~~el---a~~l~~----s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 40 RVIRILRQQGEMESYQL---ANQACI----LRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp HHHHHHHHHCSEEHHHH---HHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHH---HHHHCC----CHhHHHHHHHHHHHCCCEEee
Confidence 36677788999999986 333454 578888899999988777654
No 58
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=36.86 E-value=40 Score=21.31 Aligned_cols=55 Identities=13% Similarity=0.302 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhccCCCccee
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFL 93 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~hvG~~k~FL 93 (115)
.++.+|.++||+|+++-=+ ..|+ |+.-+-.+++-|.++..|...-+..+....++
T Consensus 41 ~iL~~l~~~~~~~~~ela~---~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~ 95 (142)
T 2bv6_A 41 LVLTILWDESPVNVKKVVT---ELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFI 95 (142)
T ss_dssp HHHHHHHHSSEEEHHHHHH---HTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEE
T ss_pred HHHHHHHHcCCcCHHHHHH---HHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEE
Confidence 3566778899999887633 3354 47778888999999887765433333333344
No 59
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=36.52 E-value=42 Score=21.33 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+-.+++.++|. +||.+. ++++|++
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~I---a~~agvs 41 (206)
T 3dew_A 8 DCRSRLMEVATELFAQKGFYGVSIREL---AQAAGAS 41 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHH---HHHHTCC
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHH---HHHhCCC
Confidence 3456788999999999995 899875 7788886
No 60
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=35.68 E-value=38 Score=24.83 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=23.7
Q ss_pred HHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 33 IFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 33 l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
|||+|.+ ||+|+++- ++..|++ -..+-||||-=-.+.+++
T Consensus 33 i~~~l~~-~~~t~~el---a~~~~~~-------~~~l~r~Lr~L~~~g~l~ 72 (334)
T 2ip2_A 33 LADLIES-GIDSDETL---AAAVGSD-------AERIHRLMRLLVAFEIFQ 72 (334)
T ss_dssp HHHHHHT-TCCSHHHH---HHHHTCC-------HHHHHHHHHHHHHTTSEE
T ss_pred cHHHHhC-CCCCHHHH---HHHhCcC-------HHHHHHHHHHHHhCCceE
Confidence 6888865 99999863 4555653 344555555443444443
No 61
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=35.66 E-value=46 Score=21.67 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 23 PEQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 23 ~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
.+-.+.|-.+-.+++.++|. +||.+. ++++|++
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ti~~I---a~~agvs 44 (216)
T 3f0c_A 10 DGKLELIINAAQKRFAHYGLCKTTMNEI---ASDVGMG 44 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCCHHHH---HHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHH---HHHhCCC
Confidence 34567899999999999995 888875 7777876
No 62
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=35.16 E-value=61 Score=21.83 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 25 QTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 25 qa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
-.+.|-.+-.+++.|+|. +||.+. ++++|++
T Consensus 29 ~r~~Il~AA~~lf~~~G~~~~t~~~I---A~~aGvs 61 (217)
T 3hta_A 29 RRQRIIDAAIRVVGQKGIAGLSHRTV---AAEADVP 61 (217)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCCHHHH---HHHHTCC
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHH---HHHcCCC
Confidence 367799999999999996 888875 6777776
No 63
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=35.03 E-value=59 Score=20.33 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhC---CcchHhHHHHHHHhccC
Q 042237 30 TRVIFDIVKEHG---PLTVAETWERVQQAGVS 58 (115)
Q Consensus 30 tr~l~dIvkeHG---PLTV~~tW~h~ke~g~~ 58 (115)
-+.|+++|+++| ++|+.+- +++.|++
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eL---A~~Lgvs 44 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDL---SGKLGTP 44 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHH---HHHHCCC
T ss_pred HHHHHHHHHHcCCCCCcCHHHH---HHHHCcC
Confidence 477889999999 9999975 6666765
No 64
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=34.92 E-value=69 Score=21.04 Aligned_cols=34 Identities=9% Similarity=0.186 Sum_probs=27.5
Q ss_pred ChhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 22 PPEQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 22 p~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+.+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 10 ~~~tr~~Il~aa~~l~~~~G~~~~ti~~I---a~~agvs 45 (189)
T 3vp5_A 10 SDEKRNRVYDACLNEFQTHSFHEAKIMHI---VKALDIP 45 (189)
T ss_dssp CHHHHHHHHHHHHHHHHHSCTTTCCHHHH---HHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHCCcccccHHHH---HHHhCCC
Confidence 445567899999999999996 788865 7788887
No 65
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=34.90 E-value=51 Score=22.04 Aligned_cols=39 Identities=8% Similarity=0.160 Sum_probs=32.1
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHhCCcc--hHhHHHHHHHh
Q 042237 17 IELKAPPEQTQTITRVIFDIVKEHGPLT--VAETWERVQQA 55 (115)
Q Consensus 17 i~~k~p~eqa~titr~l~dIvkeHGPLT--V~~tW~h~ke~ 55 (115)
..+.+.||+=..+...|.+.|+++-..| +.+.|..+=..
T Consensus 99 ~~~gV~p~~f~~~~~~ll~~l~~~lg~t~e~~~AW~~~~~~ 139 (152)
T 3pt8_B 99 FNRGIRIKELRDGYGTLLRYLEDHCHVEGSTKNAWEDFIAY 139 (152)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999996677 67889877554
No 66
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=34.89 E-value=59 Score=21.90 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=31.4
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHhCCcc--hHhHHHHHHH
Q 042237 16 PIELKAPPEQTQTITRVIFDIVKEHGPLT--VAETWERVQQ 54 (115)
Q Consensus 16 pi~~k~p~eqa~titr~l~dIvkeHGPLT--V~~tW~h~ke 54 (115)
+..+.+.||+=..+...|...|+++-+.| +.+.|+.+=.
T Consensus 97 H~~~~V~p~~f~~~~~~Ll~~l~~~lg~t~e~~~AW~k~~~ 137 (151)
T 2c0k_A 97 HHEKKVERRSYNELKDIIIEVVCSCVKLNEKQVHAYHKFFD 137 (151)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45578999999999999999999996666 3478887643
No 67
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=34.64 E-value=52 Score=21.15 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 23 PEQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 23 ~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
.+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 11 ~~~r~~Il~aa~~l~~~~G~~~~t~~~I---a~~agvs 45 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIEKGYYNTSIRDI---IALSEVG 45 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHH---HHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHH---HHHhCCC
Confidence 34556799999999999995 899875 7788887
No 68
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=34.52 E-value=38 Score=23.19 Aligned_cols=28 Identities=14% Similarity=0.424 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHh-CCcchHhHHHHHHHh
Q 042237 28 TITRVIFDIVKEH-GPLTVAETWERVQQA 55 (115)
Q Consensus 28 titr~l~dIvkeH-GPLTV~~tW~h~ke~ 55 (115)
+.....|.||+++ .|++..+-|+.+++.
T Consensus 14 SmiDvAy~iL~~~~~~~~F~dL~~eV~~~ 42 (99)
T 2krc_A 14 ALVEIAHELFEEHKKPVPFQELLNEIASL 42 (99)
T ss_dssp CHHHHHHHHHHHHCSCEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 4556788999998 799999999999997
No 69
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=34.44 E-value=80 Score=20.27 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=27.7
Q ss_pred ChhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 22 PPEQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 22 p~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
..+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 14 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~I---a~~agvs 49 (213)
T 2qtq_A 14 TPGARDLLLQTASNIMREGDVVDISLSEL---SLRSGLN 49 (213)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCCHHHH---HHHHCCC
T ss_pred ChhHHHHHHHHHHHHHHHcCcccccHHHH---HHHhCCC
Confidence 445567899999999999995 898876 7777876
No 70
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=34.38 E-value=78 Score=20.14 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 23 PEQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 23 ~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
.+-.+.|-.+-.+++.++|. +|+.+. ++++|++
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~I---a~~agvs 50 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGV---ASEAGIA 50 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHH---HHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHH---HHHhCCC
Confidence 56678899999999999996 688764 6677776
No 71
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=34.11 E-value=48 Score=20.93 Aligned_cols=33 Identities=15% Similarity=0.421 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 23 PEQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 23 ~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
.+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~ti~~I---a~~agvs 43 (196)
T 3col_A 9 MNKQVKIQDAVAAIILAEGPAGVSTTKV---AKRVGIA 43 (196)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHH---HHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHH---HHHhCCc
Confidence 34567899999999999995 888875 6777776
No 72
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=34.03 E-value=59 Score=20.98 Aligned_cols=33 Identities=15% Similarity=0.432 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHhC--CcchHhHHHHHHHhccC
Q 042237 23 PEQTQTITRVIFDIVKEHG--PLTVAETWERVQQAGVS 58 (115)
Q Consensus 23 ~eqa~titr~l~dIvkeHG--PLTV~~tW~h~ke~g~~ 58 (115)
.+-.+.|-.+..+++.++| -+||.+. ++++|++
T Consensus 30 ~~~r~~Il~aa~~l~~~~G~~~~tv~~I---a~~agvs 64 (218)
T 3dcf_A 30 NDRRTQIIKVATELFREKGYYATSLDDI---ADRIGFT 64 (218)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTCCHHHH---HHHHTCC
T ss_pred cchHHHHHHHHHHHHHHcCcccCcHHHH---HHHhCCC
Confidence 3446789999999999999 5899875 6777776
No 73
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=33.82 E-value=65 Score=18.04 Aligned_cols=61 Identities=10% Similarity=0.092 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhh-----hHHHHhhhccCCCcceee
Q 042237 23 PEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRER-----QKLRLICNHVGPHKQFLY 94 (115)
Q Consensus 23 ~eqa~titr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreR-----q~lkl~C~hvG~~k~FLy 94 (115)
.+....+...|-.+.+++| +|..+. ++..|++ -..+-+|..|+ ..+..+|...|-+..+|+
T Consensus 8 ~~~~~~~~~~l~~~r~~~g-~s~~~l---A~~~gis-------~~~i~~~e~g~~~~~~~~l~~l~~~l~~~~~~l~ 73 (74)
T 1y7y_A 8 YADLVKFGQRLRELRTAKG-LSQETL---AFLSGLD-------RSYVGGVERGQRNVSLVNILKLATALDIEPRELF 73 (74)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCHHHH---HHHHTCC-------HHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGGC
T ss_pred HHHHHHHHHHHHHHHHHcC-CCHHHH---HHHHCcC-------HHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHc
Confidence 3566789999999999998 676553 4455765 34567888886 467788888887666553
No 74
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=33.70 E-value=79 Score=21.32 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=31.2
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHhCC---cc--hHhHHHHHH
Q 042237 16 PIELKAPPEQTQTITRVIFDIVKEHGP---LT--VAETWERVQ 53 (115)
Q Consensus 16 pi~~k~p~eqa~titr~l~dIvkeHGP---LT--V~~tW~h~k 53 (115)
+..+.+.||+=..+...|...|+++-+ .| +.+.|..+=
T Consensus 103 H~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~~t~e~~~AW~~~~ 145 (154)
T 4b4y_A 103 HTKKKVPTELFGKLGGCILTQVVKRVSEAKWSEEKKEAWLKAY 145 (154)
T ss_dssp SCTTTSCTHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHH
T ss_pred HccCCCChHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 445788999999999999999999965 55 678888764
No 75
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=33.67 E-value=54 Score=21.17 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+-.+++.++|. +||.+. ++++|++
T Consensus 18 ~~r~~Il~aa~~l~~~~G~~~~s~~~I---a~~agvs 51 (212)
T 1pb6_A 18 AKKKAILSAALDTFSQFGFHGTRLEQI---AELAGVS 51 (212)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHH---HHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcCcchhhHHHH---HHHHCCC
Confidence 4457899999999999995 888865 6777776
No 76
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=33.33 E-value=67 Score=20.44 Aligned_cols=44 Identities=23% Similarity=0.371 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
.|+.+|.++||+|+++.=+. .|+ |+.-+-.+++-|.++..|...
T Consensus 41 ~iL~~l~~~~~~t~~ela~~---l~~----s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 41 FVLASLKKHGSLKVSEIAER---MEV----KPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp HHHHHHHHHSEEEHHHHHHH---HTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHH---HCC----CHHHHHHHHHHHHHCCCEeec
Confidence 35667788999999987444 344 578888899999888777654
No 77
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=33.30 E-value=42 Score=22.22 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=31.7
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHhCCcchHhHHHHHHHh
Q 042237 16 PIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQA 55 (115)
Q Consensus 16 pi~~k~p~eqa~titr~l~dIvkeHGPLTV~~tW~h~ke~ 55 (115)
+..+.+.||+=..+...|...|+++-+- .+.|+.+=..
T Consensus 96 H~~~~V~p~~f~~~~~~Ll~~l~~~lg~--~~AW~~~~~~ 133 (142)
T 1b0b_A 96 HKARGISAGQLEAAFKVLAGFMKSYGGD--EGAWTAVAGA 133 (142)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHGGGGTCC--HHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHcCc--HHHHHHHHHH
Confidence 3456789999999999999999999775 8889877554
No 78
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=33.25 E-value=49 Score=21.22 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=32.4
Q ss_pred HHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 33 IFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 33 l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
|+..|.++||+|+++.=+. .|+ |+.-+-.+|+-|.++..|...-
T Consensus 52 iL~~l~~~~~~t~~ela~~---l~~----s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGER---LYL----DSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHH---HTC----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHhCCCcCHHHHHHH---hCC----CcccHHHHHHHHHHCCCEeecC
Confidence 5566778999999876443 343 5788888999999888776543
No 79
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=33.19 E-value=43 Score=21.61 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.9
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHhC
Q 042237 17 IELKAPPEQTQTITRVIFDIVKEHG 41 (115)
Q Consensus 17 i~~k~p~eqa~titr~l~dIvkeHG 41 (115)
++|...-||.+++...+-++|.++|
T Consensus 52 l~P~l~ee~~~~~vek~~~~i~~~G 76 (77)
T 3zzp_A 52 LNPNLDQSQLQNEKEIIQRALENYG 76 (77)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5788889999999999999999988
No 80
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=33.17 E-value=67 Score=20.79 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 23 PEQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 23 ~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
.+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 16 ~~~r~~Il~aa~~l~~~~G~~~~ti~~I---a~~agvs 50 (207)
T 2rae_A 16 STTQDRISTVGIELFTEQGFDATSVDEV---AEASGIA 50 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTSCHHHH---HHHTTSC
T ss_pred HhHHHHHHHHHHHHHHHcCcccCCHHHH---HHHhCCC
Confidence 34567899999999999996 788864 6777776
No 81
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=32.97 E-value=27 Score=21.49 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHH
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLR 80 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lk 80 (115)
.|+..|.+ ||+|+++-=+.+ |++ +.-...-|+-|.+...|.
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l---~is----~~tvs~~L~~L~~~Glv~ 67 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKL---QLS----QSALSQHLAWLRRDGLVT 67 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHH---TCC----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhc-CCCCHHHHHHHH---CcC----HHHHHHHHHHHHHCCCeE
Confidence 46677777 999999865544 654 333333444455555443
No 82
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=32.81 E-value=39 Score=21.35 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhC--CcchHhHHHHHHHhccC
Q 042237 25 QTQTITRVIFDIVKEHG--PLTVAETWERVQQAGVS 58 (115)
Q Consensus 25 qa~titr~l~dIvkeHG--PLTV~~tW~h~ke~g~~ 58 (115)
-.+.|-.+..+++.++| -+||.+. ++++|++
T Consensus 13 tr~~Il~aa~~l~~~~G~~~~tv~~I---a~~agvs 45 (177)
T 3kkc_A 13 TKVAIYNAFISLLQENDYSKITVQDV---IGLANVG 45 (177)
T ss_dssp HHHHHHHHHHHHTTTSCTTTCCHHHH---HHHHCCC
T ss_pred HHHHHHHHHHHHHHhCChhHhhHHHH---HHHhCCc
Confidence 34678899999999999 6898875 7777876
No 83
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=32.75 E-value=56 Score=20.60 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccCC------CC-chhHH
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVSG------LT-GKSHM 66 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~g------L~-SK~HM 66 (115)
+-.+.|-++..+++.++|. +||.+. ++++|++- -. ||..+
T Consensus 6 ~~r~~Il~aa~~l~~~~G~~~~t~~~I---a~~agvs~~t~Y~~F~~sK~~L 54 (191)
T 1sgm_A 6 DSREKILHTASRLSQLQGYHATGLNQI---VKESGAPKGSLYHFFPNGKEEL 54 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHH---HHHHCCCSCHHHHSTTTCHHHH
T ss_pred chHHHHHHHHHHHHHHcCccccCHHHH---HHHHCCCchhHHHHccccHHHH
Confidence 4567899999999999995 899875 78888874 35 57664
No 84
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=32.50 E-value=46 Score=21.68 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=28.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccCC
Q 042237 21 APPEQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVSG 59 (115)
Q Consensus 21 ~p~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~g 59 (115)
.+.+-.+.|-.+-.+++.++|. +|+.+. ++++|++-
T Consensus 14 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~I---A~~agvs~ 51 (218)
T 3gzi_A 14 GDTQNRDKLILAARNLFIERPYAQVSIREI---ASLAGTDP 51 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCCCHHHH---HHHHTSCT
T ss_pred chhHHHHHHHHHHHHHHHHCCCCcCCHHHH---HHHhCCCH
Confidence 3445667899999999999995 788874 77778763
No 85
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi}
Probab=32.28 E-value=16 Score=26.69 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=12.4
Q ss_pred HHHHHHHHHhCCcch
Q 042237 31 RVIFDIVKEHGPLTV 45 (115)
Q Consensus 31 r~l~dIvkeHGPLTV 45 (115)
+.|.+++||||||-|
T Consensus 190 k~~~~l~k~~~~~~~ 204 (204)
T 1yzv_A 190 KTIAPLMKQTHPIRI 204 (204)
T ss_dssp HHHHHHHHSCCSSCC
T ss_pred HHHHHHHHhcCCCcC
Confidence 577889999999853
No 86
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=32.27 E-value=36 Score=23.30 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 29 ITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 29 itr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
+-+.|.++|.++|++|+++- +++.|++.= -...-++=|.+...++.+
T Consensus 4 ~d~~il~~L~~~~~~s~~~l---a~~lg~s~~----tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADL---AKKVGLSTT----PCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHH---HHHHTCCHH----HHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHH---HHHHCcCHH----HHHHHHHHHHHCCCeeec
Confidence 45789999999999988765 444566533 333344455666666643
No 87
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=31.93 E-value=77 Score=19.69 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
.++..|.++||+|+++.=+.+ |+ |+.-+-.+++-|.++..+...
T Consensus 35 ~iL~~l~~~~~~~~~ela~~l---~i----s~~~vs~~l~~L~~~gli~~~ 78 (142)
T 3bdd_A 35 SILQTLLKDAPLHQLALQERL---QI----DRAAVTRHLKLLEESGYIIRK 78 (142)
T ss_dssp HHHHHHHHHCSBCHHHHHHHH---TC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCCCHHHHHHHH---CC----CHHHHHHHHHHHHHCCCEEec
Confidence 366778889999998865443 43 678888899999998777654
No 88
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=31.79 E-value=46 Score=21.40 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
.++.+|.++||+|+++.=+ ..|+ |+.-+-.+++-|.++..|...
T Consensus 47 ~iL~~l~~~~~~t~~ela~---~l~i----~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 47 RVLACLVDNDAMMITRLAK---LSLM----EQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp HHHHHHSSCSCBCHHHHHH---HTTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHCCCcCHHHHHH---HHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 3556777888998887643 3344 577888888999888777654
No 89
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=31.65 E-value=67 Score=20.96 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+-.+++.++|. +||.+. ++++|++
T Consensus 30 ~~r~~Il~aA~~l~~~~G~~~~t~~~I---A~~aGvs 63 (222)
T 3bru_A 30 LAHQSLIRAGLEHLTEKGYSSVGVDEI---LKAARVP 63 (222)
T ss_dssp GHHHHHHHHHHHHHHHSCTTTCCHHHH---HHHHTCC
T ss_pred hHHHHHHHHHHHHHHHcCCCcCcHHHH---HHHhCCC
Confidence 4467899999999999996 888865 6777776
No 90
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=31.42 E-value=88 Score=19.46 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHHHHHHHhC--CcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 32 VIFDIVKEHG--PLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 32 ~l~dIvkeHG--PLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
.++.+|.++| |+|+++.=+ ..|+ |+.-+-.+++-|.++..|...-
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~---~l~~----~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLES---EFSI----KSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHH---HHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHH---HHCC----CcchHHHHHHHHHHCCCEEeeC
Confidence 3566777787 899998744 3354 5788888999999887776543
No 91
>3o1f_A ATP-dependent CLP protease adapter protein CLPS; adaptor, hydrolase; HET: SME; 1.40A {Escherichia coli} SCOP: d.45.1.2 PDB: 3o1f_B* 3o2o_A
Probab=30.97 E-value=44 Score=22.02 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.5
Q ss_pred CChhHHHHHHHHHHHHHHHhC-Ccc
Q 042237 21 APPEQTQTITRVIFDIVKEHG-PLT 44 (115)
Q Consensus 21 ~p~eqa~titr~l~dIvkeHG-PLT 44 (115)
-|.|.|++-...+.+.-++|| ||-
T Consensus 51 ~~~e~AE~k~~~v~~~ar~~~~PL~ 75 (81)
T 3o1f_A 51 FTAEVAETKVAXVNKYARENEHPLL 75 (81)
T ss_dssp ECHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCce
Confidence 368899999999999999999 874
No 92
>3lb2_A Dehaloperoxidase A; globin, oxidoreductase; HET: HEM; 1.06A {Amphitrite ornata} SCOP: a.1.1.2 PDB: 1ewa_A* 1ew6_A* 2qfk_A* 3kun_A* 3lb1_A* 3dr9_A* 3lb3_A* 3lb4_A* 3mou_A* 3ord_A* 3mym_A* 3k3u_A* 3o7n_A* 3kuo_A* 2qfn_A* 3myn_A* 3oj1_A* 3ok5_A* 3ixf_A*
Probab=30.74 E-value=76 Score=21.66 Aligned_cols=35 Identities=9% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCcchHhHHHHHHH
Q 042237 20 KAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQ 54 (115)
Q Consensus 20 k~p~eqa~titr~l~dIvkeHGPLTV~~tW~h~ke 54 (115)
.|.|++=..+...|..+|+++|.-.+.+.|+.+=.
T Consensus 91 gV~p~~F~~l~~~ll~~L~~~~~~e~~~AW~k~~~ 125 (137)
T 3lb2_A 91 SLTTGNFEKLFVALVEYMRASGQSFDSQSWDRFGK 125 (137)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 48999999999999999999998778888987643
No 93
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=30.66 E-value=38 Score=22.14 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHH
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIV 69 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~ 69 (115)
.|+..|.++||+|+++.-+. .|++-=+=-+|++.|
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~---l~is~stvs~~L~~L 80 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANI---LGVTIANASHHLRTL 80 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHH---HTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHH---HCcCHHHHHHHHHHH
Confidence 45777888999999986544 465433333454443
No 94
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=30.43 E-value=75 Score=20.84 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+-.+++.++|- .||++. ++++|++
T Consensus 10 ~~r~~Il~aA~~lf~~~G~~~~s~~~I---a~~Agvs 43 (197)
T 2f07_A 10 GKYEKILQAAIEVISEKGLDKASISDI---VKKAGTA 43 (197)
T ss_dssp SHHHHHHHHHHHHHHHHCTTTCCHHHH---HHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHH---HHHhCCC
Confidence 3456788999999999995 677764 5555554
No 95
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=30.38 E-value=57 Score=24.64 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHHHHhC-C---cchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhh
Q 042237 33 IFDIVKEHG-P---LTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICN 84 (115)
Q Consensus 33 l~dIvkeHG-P---LTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~ 84 (115)
|||+|.++| | +|+++. ++..|++ -++-.+-..+-||||-=-.+.++..
T Consensus 49 if~~L~~~g~pg~~~t~~eL---A~~~~~~-~~~~~~~~~l~rlLr~L~~~gll~~ 100 (372)
T 1fp1_D 49 LFEIIAKATPPGAFMSPSEI---ASKLPAS-TQHSDLPNRLDRMLRLLASYSVLTS 100 (372)
T ss_dssp HHHHHHTCSSTTCCBCHHHH---HTTSCGG-GCCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHhcCCCCCCcCHHHH---HHhcCCC-CCCCcChHHHHHHHHHHhhCCceEe
Confidence 689999988 9 999853 3333431 0112255666677766555555544
No 96
>1k0w_A L-ribulose 5 phosphate 4-epimerase; aldolase, isomerase; 2.10A {Escherichia coli} SCOP: c.74.1.1 PDB: 1jdi_A
Probab=30.12 E-value=5.1 Score=29.48 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=15.7
Q ss_pred HHHHhCCcchHhHHHHHHH
Q 042237 36 IVKEHGPLTVAETWERVQQ 54 (115)
Q Consensus 36 IvkeHGPLTV~~tW~h~ke 54 (115)
|++.||+++++++++.+-.
T Consensus 167 ll~nHG~~~~G~~~~eA~~ 185 (231)
T 1k0w_A 167 LVHSHGPFAWGKNAEDAVH 185 (231)
T ss_dssp EETTTEEEEEESSHHHHHH
T ss_pred EEcCCCCeEecCCHHHHHH
Confidence 4568999999999888765
No 97
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Probab=29.74 E-value=9 Score=29.22 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHH----HHHHhCCcchHhHHHHHHH
Q 042237 23 PEQTQTITRVIFD----IVKEHGPLTVAETWERVQQ 54 (115)
Q Consensus 23 ~eqa~titr~l~d----IvkeHGPLTV~~tW~h~ke 54 (115)
.|.++.+++.+-+ |++.||.++++++.+.+-.
T Consensus 191 ~ela~~i~~~l~~~~avll~nHG~~~~G~~~~eA~~ 226 (274)
T 2v9l_A 191 DAIGQATAQEMQKHSLVLWPFHGVFGSGPTLDETFG 226 (274)
T ss_dssp HHHHHHHHHHHTTCSEEEETTTEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHccCCEEEEcCCCceEecCCHHHHHH
Confidence 4778888887755 5789999999998877654
No 98
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=29.58 E-value=4.8 Score=35.65 Aligned_cols=50 Identities=24% Similarity=0.415 Sum_probs=35.7
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCcchHhHHHHHHHhccC--CCCchhHHHHH
Q 042237 20 KAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVS--GLTGKSHMKIV 69 (115)
Q Consensus 20 k~p~eqa~titr~l~dIvkeHGPLTV~~tW~h~ke~g~~--gL~SK~HMKi~ 69 (115)
.-.|.+|+..-..|..+.-||.||+|.+|+..|--+|-+ .-|.|.+..-+
T Consensus 329 delppdaekaraqliklyvehnplsvtecytqvvtagqrvaaenqkeqfeyv 380 (761)
T 4fye_A 329 DELPPDAEKARAQLIKLYVEHNPLSVTECYTQVVTAGQRVAAENQKEQFEYV 380 (761)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHSCCEEEEEEEECSCTTBCSSCTTHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHHHhhhcCCchHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence 334456666666788888999999999999988877643 44555555444
No 99
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=29.50 E-value=73 Score=20.16 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
.++.+|.++||+|+++.=+.+ |+ |+.-+-.+++-|.++..|...
T Consensus 46 ~iL~~l~~~~~~t~~ela~~l---~~----~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNKM---YL----ACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHHH---TC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CC----CchhHHHHHHHHHHCCCeeec
Confidence 355667778999998875443 43 577888888989888777654
No 100
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=29.11 E-value=52 Score=21.66 Aligned_cols=34 Identities=12% Similarity=0.334 Sum_probs=26.2
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHhC-CcchHhHHH
Q 042237 17 IELKAPPEQTQTITRVIFDIVKEHG-PLTVAETWE 50 (115)
Q Consensus 17 i~~k~p~eqa~titr~l~dIvkeHG-PLTV~~tW~ 50 (115)
++|....||+.++...+-++|.++| -+.=.+.|+
T Consensus 13 l~p~~~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG 47 (99)
T 3r3t_A 13 IRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWG 47 (99)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHTTTCCCCCCCCCC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEee
Confidence 4567788999999999999999876 455445554
No 101
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=28.64 E-value=75 Score=21.15 Aligned_cols=38 Identities=5% Similarity=0.212 Sum_probs=30.8
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhCC-cc--hHhHHHHHHHh
Q 042237 18 ELKAPPEQTQTITRVIFDIVKEHGP-LT--VAETWERVQQA 55 (115)
Q Consensus 18 ~~k~p~eqa~titr~l~dIvkeHGP-LT--V~~tW~h~ke~ 55 (115)
...+.||+=..+...|...|+++-+ .| +.+.|+.+=..
T Consensus 101 ~~gV~p~~f~~~~~~Ll~~l~~~lg~~t~e~~~AW~~~~~~ 141 (150)
T 1x46_A 101 GRGVTAAHFEEFETALEAFLESHASGYNAGTKKAWDSAFNN 141 (150)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3468899999999999999999977 55 56888876543
No 102
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=28.54 E-value=92 Score=18.18 Aligned_cols=35 Identities=14% Similarity=0.541 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHH
Q 042237 31 RVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWM 73 (115)
Q Consensus 31 r~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWM 73 (115)
+.|.+.+++||+ +.|..+.+. |..++-.-+-.||.
T Consensus 17 ~~L~~~v~~~G~----~~W~~Ia~~----~~~Rt~~qcr~Rw~ 51 (60)
T 2d9a_A 17 EQLRALVRQFGQ----QDWKFLASH----FPNRTDQQCQYRWL 51 (60)
T ss_dssp HHHHHHHHHTCT----TCHHHHHHH----CSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CCHHHHHHH----ccCCCHHHHHHHHH
Confidence 457788999996 579998875 33345555556664
No 103
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=28.53 E-value=9.2 Score=26.64 Aligned_cols=61 Identities=20% Similarity=0.429 Sum_probs=42.7
Q ss_pred HhCCcchHhHHHH------HHHhccCCCCchhHHHHHHHHHHhh-------hHHHHhhhccCCCcceeeeeccCCC
Q 042237 39 EHGPLTVAETWER------VQQAGVSGLTGKSHMKIVLRWMRER-------QKLRLICNHVGPHKQFLYTTWFTKP 101 (115)
Q Consensus 39 eHGPLTV~~tW~h------~ke~g~~gL~SK~HMKi~LrWMreR-------q~lkl~C~hvG~~k~FLyttw~~~P 101 (115)
+.|=|.=.+.|+. |++-||..|| ..|.+++ +.+|+- -.+|.+|...|-..++||..|+..|
T Consensus 15 ~~GfL~~~~dW~ee~A~~lA~~egI~eLT-e~HW~vI-~flR~yY~e~~~~P~iR~l~K~~~~~~k~Ly~LFP~gP 88 (105)
T 3or1_C 15 EDGFLNAFDDWCPEWVKYAKGSEGIGAGS-ADHQKII-DFLQDYYKANGIAPMVRILSKNTGFALKEIYELFPSGP 88 (105)
T ss_dssp TTSCBSCGGGCCHHHHHHHGGGGTCSSCC-HHHHHHH-HHHHHHHHHHSSCCCHHHHHHHHCCCHHHHHHHCTTCT
T ss_pred CCCCcCChHhCCHHHHHHHHHHCCCccCC-HHHHHHH-HHHHHHHHHHCCCCcHHHHHHHHCcCHHHHHHHCCCCH
Confidence 3455544556653 2233565565 4788864 667763 3689999999999999999999988
No 104
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=28.51 E-value=56 Score=21.50 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=25.2
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHhCC-cchHhHH
Q 042237 17 IELKAPPEQTQTITRVIFDIVKEHGP-LTVAETW 49 (115)
Q Consensus 17 i~~k~p~eqa~titr~l~dIvkeHGP-LTV~~tW 49 (115)
++|....||+.++...+-++|.++|- +.=.+.|
T Consensus 10 l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~w 43 (101)
T 1cqm_A 10 LNPNLDQSQLALEKEIIQRALENYGARVEKVAIL 43 (101)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 45677889999999999999999874 4333444
No 105
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=28.50 E-value=61 Score=17.84 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.5
Q ss_pred CCChhHHHHHHHHHHHHHHHh
Q 042237 20 KAPPEQTQTITRVIFDIVKEH 40 (115)
Q Consensus 20 k~p~eqa~titr~l~dIvkeH 40 (115)
....||-+.+++.|++.+.++
T Consensus 13 g~s~e~k~~l~~~l~~~l~~~ 33 (63)
T 2x4k_A 13 GRSDEQLKNLVSEVTDAVEKT 33 (63)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999987
No 106
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=28.42 E-value=74 Score=20.35 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+-.+++.|+|. +|+.+. ++++|++
T Consensus 8 ~~r~~Il~aA~~l~~~~G~~~~t~~~I---A~~Agvs 41 (194)
T 3dpj_A 8 QTRDQIVAAADELFYRQGFAQTSFVDI---SAAVGIS 41 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHH---HHHHTCC
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHH---HHHHCCC
Confidence 3456788999999999995 888875 6777776
No 107
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=28.21 E-value=86 Score=17.73 Aligned_cols=35 Identities=17% Similarity=0.561 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHH
Q 042237 31 RVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWM 73 (115)
Q Consensus 31 r~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWM 73 (115)
..|.+.+++||+ ..|..+.+. +..++-.-+--||.
T Consensus 12 ~~L~~~v~~~G~----~~W~~Ia~~----~~~Rt~~qcr~Rw~ 46 (52)
T 1guu_A 12 EKLKKLVEQNGT----DDWKVIANY----LPNRTDVQCQHRWQ 46 (52)
T ss_dssp HHHHHHHHHHCS----SCHHHHHHT----STTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CCHHHHHHH----cCCCCHHHHHHHHH
Confidence 357788899997 469998874 33455555556664
No 108
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=28.20 E-value=85 Score=20.19 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 25 QTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 25 qa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
-.+.|-.+-.+++.++|. +||.+. ++++|++
T Consensus 27 ~r~~Il~aA~~l~~~~G~~~~t~~~I---a~~agvs 59 (217)
T 3mvp_A 27 KRNKILQVAKDLFSDKTYFNVTTNEI---AKKADVS 59 (217)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHH---HHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCccccCHHHH---HHHhCCC
Confidence 356788999999999995 888875 6777775
No 109
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=27.92 E-value=56 Score=20.29 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
.|+.+|.++||+|+++.=+. .|+ |+.-+-.+++-|.++..|...
T Consensus 42 ~iL~~l~~~~~~t~~ela~~---l~~----~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 42 AALVRLGETGPCPQNQLGRL---TAM----DAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp HHHHHHHHHSSBCHHHHHHH---TTC----CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHH---HCC----CHHHHHHHHHHHHHCCCEEee
Confidence 46677888999999886443 344 577788888888888776653
No 110
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=27.86 E-value=63 Score=21.65 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=35.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCC--cc--hHhHHHHHHHhccCCCCch
Q 042237 19 LKAPPEQTQTITRVIFDIVKEHGP--LT--VAETWERVQQAGVSGLTGK 63 (115)
Q Consensus 19 ~k~p~eqa~titr~l~dIvkeHGP--LT--V~~tW~h~ke~g~~gL~SK 63 (115)
+.+.||+=..+...|...|+++-+ .| |.+.|+.+=..-...|.++
T Consensus 91 ~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~~l~~~ 139 (141)
T 2r80_A 91 LRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAK 139 (141)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHTGG
T ss_pred cCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhh
Confidence 789999999999999999999966 44 4578988876655555544
No 111
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=27.76 E-value=68 Score=21.02 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 26 TQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 26 a~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 25 r~~Il~aA~~lf~~~G~~~~t~~~I---A~~agvs 56 (214)
T 2zb9_A 25 RAEVLHAVGELLLTEGTAQLTFERV---ARVSGVS 56 (214)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHH---HHHHCCC
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHH---HHHHCCC
Confidence 67899999999999995 888875 6777776
No 112
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=27.74 E-value=56 Score=18.27 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=20.8
Q ss_pred CChhHHHHHHHHHHHHHHHhCCcchHh
Q 042237 21 APPEQTQTITRVIFDIVKEHGPLTVAE 47 (115)
Q Consensus 21 ~p~eqa~titr~l~dIvkeHGPLTV~~ 47 (115)
...||-+.+++.|++.+.++=-+.-.+
T Consensus 11 rs~e~k~~l~~~i~~~l~~~lg~p~~~ 37 (62)
T 1otf_A 11 RTDEQKETLIRQVSEAMANSLDAPLER 37 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 368999999999999999973333333
No 113
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=27.61 E-value=35 Score=25.80 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHhC-CcchHhHHHHHHHhccCCC
Q 042237 23 PEQTQTITRVIFDIVKEHG-PLTVAETWERVQQAGVSGL 60 (115)
Q Consensus 23 ~eqa~titr~l~dIvkeHG-PLTV~~tW~h~ke~g~~gL 60 (115)
.++....++.|.++.+++| ||-|.|-|+-+.++|..|+
T Consensus 78 ~~~~~~~a~~l~~l~~~~~~~liInd~~~lA~~~gAdGV 116 (243)
T 3o63_A 78 ARDELAACEILADAAHRYGALFAVNDRADIARAAGADVL 116 (243)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEeCHHHHHHHhCCCEE
Confidence 5677778899999999987 8999999999999988763
No 114
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=27.61 E-value=46 Score=20.95 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHH
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIV 69 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~ 69 (115)
.|+..+.++||+|+++.-+. .|++-=+=-+|++.+
T Consensus 31 ~IL~~l~~~~~~~~~ela~~---l~is~stvs~hL~~L 65 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQI---LKLPQSTVSQHLCKM 65 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHH---HTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHH---HCcCHHHHHHHHHHH
Confidence 35545567899999986544 465533334666654
No 115
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=27.49 E-value=94 Score=19.58 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 23 PEQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 23 ~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
.+-.+.|-.+-.+++.++|. +||.+. ++++|++
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~t~~~I---A~~agvs 45 (199)
T 3on2_A 11 GSLRRVLLARAESTLEKDGVDGLSLRQL---AREAGVS 45 (199)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHH---HHHTC--
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhHHHH---HHHhCCC
Confidence 34567899999999999995 788874 7777876
No 116
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=27.40 E-value=47 Score=20.46 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHH
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLR 80 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lk 80 (115)
.|++.| +||+|+++- +++.|++ +.-....|+-|.+...|.
T Consensus 35 ~Il~~L--~~~~~~~eL---a~~l~is----~~tv~~~L~~L~~~Glv~ 74 (96)
T 1y0u_A 35 KILRML--DKGRSEEEI---MQTLSLS----KKQLDYHLKVLEAGFCIE 74 (96)
T ss_dssp HHHHHH--HTTCCHHHH---HHHHTCC----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHH--cCCCCHHHH---HHHHCcC----HHHHHHHHHHHHHCCCEE
Confidence 466667 799999974 4444654 344555566666666654
No 117
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=27.34 E-value=79 Score=19.84 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~I---a~~agvs 41 (188)
T 3qkx_A 8 DLAEQIFSATDRLMAREGLNQLSMLKL---AKEANVA 41 (188)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTCCHHHH---HHHHTCC
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHH---HHHhCCC
Confidence 3456788999999999994 788764 5666665
No 118
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=27.27 E-value=1.1e+02 Score=19.59 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~ti~~I---a~~agvs 47 (220)
T 3lhq_A 14 ETRQHILDVALRLFSQQGVSATSLAEI---ANAAGVT 47 (220)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHH---HHHHTCC
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHH---HHHhCCC
Confidence 3457788999999999996 688865 6777776
No 119
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=27.25 E-value=45 Score=25.73 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=28.4
Q ss_pred HHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 33 IFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 33 l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
++.||.-|+|+|-++. ..+.|+++-. +++-+.+|..++-.
T Consensus 105 tLaiIAy~QPITR~eI------~~irGv~~~~----~v~~Lle~gLI~e~ 144 (219)
T 2z99_A 105 TLAVVAYRQPVTRARV------SAVRGVNVDA----VMRTLLARGLITEV 144 (219)
T ss_dssp HHHHHHHHCSEEHHHH------HHHHTSCCHH----HHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCcCHHHH------HHHHCCCHHH----HHHHHHHCCCEEEc
Confidence 6789999999998764 4567888844 45555667666554
No 120
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=27.17 E-value=28 Score=26.54 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=25.6
Q ss_pred HHHHHHHh-CCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHH
Q 042237 33 IFDIVKEH-GPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKL 79 (115)
Q Consensus 33 l~dIvkeH-GPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~l 79 (115)
|||+|.++ ||+|+++- ++..|++ ..-...+|+.+.....|
T Consensus 33 lfd~L~~~~~p~t~~eL---A~~~g~~----~~~l~rlLr~L~~~gll 73 (353)
T 4a6d_A 33 VFDLLAEAPGPLDVAAV---AAGVRAS----AHGTELLLDICVSLKLL 73 (353)
T ss_dssp HHHHHHHSSSCBCHHHH---HHHHTCC----HHHHHHHHHHHHHTTSE
T ss_pred HHHHHhcCCCCCCHHHH---HHhhCcC----HHHHHHHHHHHHHCCCE
Confidence 69999887 79999875 4444544 23455555555554444
No 121
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=27.09 E-value=96 Score=19.48 Aligned_cols=33 Identities=9% Similarity=0.243 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 23 PEQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 23 ~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
.+-.+.|-.+-.+++.++|. +|+.+. ++++|++
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~t~~~I---A~~agvs 43 (191)
T 3on4_A 9 SNTKERILAVAEALIQKDGYNAFSFKDI---ATAINIK 43 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHH---HHHHTCC
T ss_pred hhHHHHHHHHHHHHHHHhCcccCCHHHH---HHHhCCC
Confidence 45677899999999999995 788764 6777776
No 122
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=26.96 E-value=6.2 Score=28.78 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHH----HHHHhCCcchHhHHHHHHH
Q 042237 24 EQTQTITRVIFD----IVKEHGPLTVAETWERVQQ 54 (115)
Q Consensus 24 eqa~titr~l~d----IvkeHGPLTV~~tW~h~ke 54 (115)
|-++.|++.|-+ |++.||+++++++++.+-.
T Consensus 135 ~la~~i~~~l~~~~avll~nHG~~~~G~~~~eA~~ 169 (215)
T 1e4c_P 135 ELSEHVALALKNRKATLLQHHGLIACEVNLEKALW 169 (215)
T ss_dssp HHHHHHHHHTSSCSEEEETTTEEEEEESSHHHHHH
T ss_pred HHHHHHHHHhccCCEEEEcCCCcEEEeCCHHHHHH
Confidence 456666665533 5678999999998887654
No 123
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=26.64 E-value=85 Score=23.94 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=25.1
Q ss_pred HHHHHHHh-C---CcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 33 IFDIVKEH-G---PLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 33 l~dIvkeH-G---PLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
|||+|.++ | |+|+++- ++..| ......-..+-||||-=--+.++
T Consensus 46 lfd~L~~~~gp~~~~t~~eL---A~~~~---~~~~~~~~~l~rlLr~L~~~gll 93 (368)
T 3reo_A 46 VLEIMAKSVPPSGYISPAEI---AAQLP---TTNPEAPVMLDRVLRLLASYSVV 93 (368)
T ss_dssp HHHHHHHHCCTTCCBCHHHH---HTTSS---CCCTTHHHHHHHHHHHHHHTTSE
T ss_pred chhHHhhcCCCCCCcCHHHH---HHhcC---cCCCcchhhHHHHHHHHHhCCCe
Confidence 89999998 7 5999854 33333 11223334566777644444433
No 124
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=26.49 E-value=52 Score=22.33 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=16.5
Q ss_pred ccCCCChhHHHHHH----HHHHHHHHHhC
Q 042237 17 IELKAPPEQTQTIT----RVIFDIVKEHG 41 (115)
Q Consensus 17 i~~k~p~eqa~tit----r~l~dIvkeHG 41 (115)
|+ .+|++|.+.|+ ++|..-|+||-
T Consensus 45 ln-~V~~~qR~~iAe~Fa~AL~~Sv~~~~ 72 (76)
T 2jr2_A 45 IA-QVPESKRVAVVDNFTKALKQSVLEHH 72 (76)
T ss_dssp HT-TSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HH-hCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56 89999976665 55666666663
No 125
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=26.45 E-value=86 Score=19.82 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=30.3
Q ss_pred ChhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccCC------CCchhH
Q 042237 22 PPEQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVSG------LTGKSH 65 (115)
Q Consensus 22 p~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~g------L~SK~H 65 (115)
..+-.+.|-.+..+++.++|. +|+.+. ++++|++- -.||..
T Consensus 8 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~I---A~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 8 YDDTRQHLLDTGYRIMAVKGFSGVGLNEI---LQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp --CHHHHHHHHHHHHHHHHCSTTCCHHHH---HHHHTCCHHHHTTTCSCHHH
T ss_pred hHhHHHHHHHHHHHHHHHCCcccCCHHHH---HHHhCCChhhHHHHcCCHHH
Confidence 345667899999999999995 788875 77788762 456665
No 126
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=26.23 E-value=76 Score=20.58 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccCC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVSG 59 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~g 59 (115)
+-.+.|-++..+++.++|. +||.+. ++++|++-
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~ti~~I---A~~agvs~ 43 (193)
T 2dg8_A 9 QRRERILAATLDLIAEEGIARVSHRRI---AQRAGVPL 43 (193)
T ss_dssp THHHHHHHHHHHHHHHHCGGGCCHHHH---HHHHTSCT
T ss_pred hHHHHHHHHHHHHHHHhChhhccHHHH---HHHhCCCc
Confidence 4567899999999999995 888875 77778763
No 127
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=26.14 E-value=53 Score=20.65 Aligned_cols=59 Identities=7% Similarity=0.251 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhccCCCcceeeeec
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTW 97 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~hvG~~k~FLyttw 97 (115)
.+..+|-++||+|+++.-+++..- .|+ ++.-+..+|+=|-++..|...-+ | ..++|..-
T Consensus 14 ~vL~~L~~~~~~t~~el~~~l~~~--~~~-~~~Tvt~~l~rLe~kGlv~R~~~--~--r~~~~~~~ 72 (126)
T 1sd4_A 14 DVMNIIWDKKSVSANEIVVEIQKY--KEV-SDKTIRTLITRLYKKEIIKRYKS--E--NIYFYSSN 72 (126)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHTT--SCC-CHHHHHHHHHHHHHTTSEEEEEE--T--TEEEEEEC
T ss_pred HHHHHHHhcCCCCHHHHHHHHhhc--CCC-ChhhHHHHHHHHHHCCceEEEeC--C--CeEEEEEe
Confidence 466788889999999998887532 233 47888899999998887766542 3 36676543
No 128
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=25.97 E-value=69 Score=22.86 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=27.5
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHhC--CcchHhHHHHHHHhccC
Q 042237 16 PIELKAPPEQTQTITRVIFDIVKEHG--PLTVAETWERVQQAGVS 58 (115)
Q Consensus 16 pi~~k~p~eqa~titr~l~dIvkeHG--PLTV~~tW~h~ke~g~~ 58 (115)
+-+..-+..-.+.|-.+-.+++.++| -+|+.+. ++++|++
T Consensus 11 ~~r~~r~~~tr~~Il~AA~~l~~e~G~~~~S~~~I---A~~aGvs 52 (243)
T 2g7l_A 11 RDRPAKPALSRRWIVDTAVALMRAEGLEKVTMRRL---AQELDTG 52 (243)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHHCSSSCCHHHH---HHHTTSC
T ss_pred CCCCCCcccCHHHHHHHHHHHHHhcCchhcCHHHH---HHHHCCC
Confidence 33344445567889999999999999 4888865 6677776
No 129
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=25.86 E-value=46 Score=19.89 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHH
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRL 81 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl 81 (115)
.|+..|.++||+|+++.=+ ..|+ |+.-....|+-|.+...+..
T Consensus 28 ~il~~l~~~~~~s~~ela~---~l~i----s~~tvs~~l~~L~~~glv~~ 70 (99)
T 3cuo_A 28 LILCMLSGSPGTSAGELTR---ITGL----SASATSQHLARMRDEGLIDS 70 (99)
T ss_dssp HHHHHHTTCCSEEHHHHHH---HHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCcCHHHHHH---HHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 4667788888999998544 3355 46666677777777766644
No 130
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=25.81 E-value=35 Score=25.59 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=25.1
Q ss_pred HHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhh
Q 042237 33 IFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICN 84 (115)
Q Consensus 33 l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~ 84 (115)
|||+|.+ ||+|+++. ++..|++ -..+-||||---.+.++..
T Consensus 47 lf~~l~~-g~~t~~el---A~~~g~~-------~~~l~rlLr~l~~~g~l~~ 87 (348)
T 3lst_A 47 VADHLVD-GPRTPAEL---AAATGTD-------ADALRRVLRLLAVRDVVRE 87 (348)
T ss_dssp GGGGGTT-SCBCHHHH---HHHHTCC-------HHHHHHHHHHHHHTTSEEE
T ss_pred chhHhhC-CCCCHHHH---HHHhCcC-------HHHHHHHHHHHHhCCCEEe
Confidence 6788875 89999986 4445543 2355666665444444443
No 131
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=25.73 E-value=1.1e+02 Score=20.08 Aligned_cols=36 Identities=8% Similarity=0.277 Sum_probs=28.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHh-CC-c--chHhHHHHHHH
Q 042237 19 LKAPPEQTQTITRVIFDIVKEH-GP-L--TVAETWERVQQ 54 (115)
Q Consensus 19 ~k~p~eqa~titr~l~dIvkeH-GP-L--TV~~tW~h~ke 54 (115)
+.+.||+=..+...|...|+++ |. . .+.+.|..+=.
T Consensus 96 l~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~ 135 (147)
T 1jf3_A 96 KHIKAEYFEPLGASLLSAMEHRIGGKMNAAAKDAWAAAYG 135 (147)
T ss_dssp SCCCGGGHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 4589999999999999999999 52 3 36677876643
No 132
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=25.67 E-value=96 Score=20.45 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 30 TRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 30 tr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
-+.|.+.|.++|++|+++-= ++.|+ |+.-....|+-|.+...++.+-
T Consensus 7 d~~il~~L~~~~~~s~~ela---~~lg~----s~~tv~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELG---RKIKL----SPPSVTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHH---HHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHH---HHHCc----CHHHHHHHHHHHHHCCCeEEEe
Confidence 45789999999999998754 34454 5677778888888888887543
No 133
>1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A {Chironomus thummi thummi} SCOP: a.1.1.2 PDB: 1ecd_A* 1ecn_A* 1eco_A*
Probab=25.54 E-value=1e+02 Score=20.63 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=28.3
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHhCCcchH-hHHHHH
Q 042237 17 IELKAPPEQTQTITRVIFDIVKEHGPLTVA-ETWERV 52 (115)
Q Consensus 17 i~~k~p~eqa~titr~l~dIvkeHGPLTV~-~tW~h~ 52 (115)
....|.|++=..+...|...|++|.+.|-+ +.|+.+
T Consensus 88 ~~~~V~p~~F~~l~~~ll~~l~~~~g~t~~~~AW~k~ 124 (136)
T 1eca_A 88 KPRGVTHDQLNNFRAGFVSYMKAHTDFAGAEAAWGAT 124 (136)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHHHHSCGGGGHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Confidence 345688999999999999999999875543 556655
No 134
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=25.25 E-value=60 Score=23.89 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=16.0
Q ss_pred HHHHHHHhCCcchHhHHHHHHHhcc
Q 042237 33 IFDIVKEHGPLTVAETWERVQQAGV 57 (115)
Q Consensus 33 l~dIvkeHGPLTV~~tW~h~ke~g~ 57 (115)
|||+|.+ ||+|+++. ++..|+
T Consensus 30 lf~~l~~-g~~t~~el---A~~~~~ 50 (332)
T 3i53_A 30 VADHIAA-GHRTAAEI---ASAAGA 50 (332)
T ss_dssp HHHHHHT-TCCBHHHH---HHHHTC
T ss_pred hHHHHhc-CCCCHHHH---HHHHCc
Confidence 8999976 99999985 444454
No 135
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, lyase; 1.95A {Pseudomonas syringae PV}
Probab=25.11 E-value=9.3 Score=29.49 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHH----HHHHhCCcchHhHHHHHH
Q 042237 23 PEQTQTITRVIFD----IVKEHGPLTVAETWERVQ 53 (115)
Q Consensus 23 ~eqa~titr~l~d----IvkeHGPLTV~~tW~h~k 53 (115)
.|++..|++.|-+ |++.||.+|++.+.+.+-
T Consensus 169 ~el~~~i~~~l~~~~avlL~nHG~~~~G~tl~eA~ 203 (273)
T 3ocr_A 169 LSERERLVADLGDKSVMILRNHGLLTGGVSVEHAI 203 (273)
T ss_dssp HHHHHHHHHHHTTCSEEEETTTEEEEEESSHHHHH
T ss_pred HHHHHHHHHHhCcCCEEEEcCCceEEecCCHHHHH
Confidence 4677778777644 588999999988776554
No 136
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=25.09 E-value=55 Score=20.90 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=26.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 22 PPEQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 22 p~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
.-+-.+.|-.+-.+++.++|. +||.+. ++++|++
T Consensus 12 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~I---A~~agvs 47 (191)
T 4aci_A 12 PTNSRQEILEGARRCFAEHGYEGATVRRL---EEATGKS 47 (191)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHCCHHHH---HHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHhCcccCCHHHH---HHHHCCC
Confidence 344567889999999999995 788875 7777876
No 137
>1ith_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.50A {Urechis caupo} SCOP: a.1.1.2
Probab=25.08 E-value=96 Score=20.45 Aligned_cols=39 Identities=8% Similarity=0.177 Sum_probs=31.2
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHhCCcch--HhHHHHHHH
Q 042237 16 PIELKAPPEQTQTITRVIFDIVKEHGPLTV--AETWERVQQ 54 (115)
Q Consensus 16 pi~~k~p~eqa~titr~l~dIvkeHGPLTV--~~tW~h~ke 54 (115)
+..+.+.||+=..+...|...|+++-+.|- .+.|+.+=.
T Consensus 94 H~~~gV~p~~f~~~~~~ll~~l~~~lg~t~e~~~AW~~~~~ 134 (141)
T 1ith_A 94 HDAMGITPKHFGQLLKLVGGVFQEEFSADPTTVAAWGDAAG 134 (141)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 346789999999999999999999966763 577877643
No 138
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=25.07 E-value=1.1e+02 Score=19.23 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=33.2
Q ss_pred HHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 33 IFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 33 l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
++.+|.++||+|+++.=+.+ |+ |+.-+-.+++-|.++..|...-
T Consensus 34 iL~~l~~~~~~t~~~la~~l---~~----s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 34 YLVRVCENPGIIQEKIAELI---KV----DRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHHH---TC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCcCcCHHHHHHHH---CC----CHhHHHHHHHHHHHCCCEEeec
Confidence 56677889999999875544 44 5788888899998887776543
No 139
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=24.80 E-value=93 Score=19.99 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=30.4
Q ss_pred HHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 33 IFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 33 l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
|+.+|.++|++|+++.=+. .|+ |+.-+-.+++-|.++..|...
T Consensus 54 iL~~l~~~~~~t~~ela~~---l~i----s~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 54 VITILALYPGSSASEVSDR---TAM----DKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp HHHHHHHSTTCCHHHHHHH---HTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHhCCCCCHHHHHHH---HCC----CHHHHHHHHHHHHHCCCEeee
Confidence 5566677889988876443 343 577888889999888777654
No 140
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=24.47 E-value=1e+02 Score=17.43 Aligned_cols=35 Identities=23% Similarity=0.607 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHH
Q 042237 31 RVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWM 73 (115)
Q Consensus 31 r~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWM 73 (115)
..|.+.+++||+ ..|..+.+. +..++---+-.||.
T Consensus 12 ~~L~~~v~~~G~----~~W~~Ia~~----~~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 12 QRLIKLVQKYGP----KRWSVIAKH----LKGRIGKQCRERWH 46 (52)
T ss_dssp HHHHHHHHHHCT----TCHHHHHTT----STTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCc----ChHHHHHHH----cCCCCHHHHHHHHH
Confidence 457788899996 469988774 33344445555554
No 141
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=24.47 E-value=1e+02 Score=19.90 Aligned_cols=44 Identities=2% Similarity=-0.085 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
.++.+|.++||+|+++-= +..|+ |+.-+-.+++-|.++..|...
T Consensus 54 ~vL~~l~~~~~~t~~eLa---~~l~~----~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 54 PFLMRLYREDGINQESLS---DYLKI----DKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp HHHHHHHHSCSEEHHHHH---HHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCCCHHHHH---HHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 355667788999999863 34454 478888888888888776654
No 142
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=24.45 E-value=73 Score=21.42 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=30.9
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHH
Q 042237 16 PIELKAPPEQTQTITRVIFDIVKEHGP--LTVAETWERVQQ 54 (115)
Q Consensus 16 pi~~k~p~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke 54 (115)
+..+.+.||+=..+...|...|+++-+ .|- +.|+.+=.
T Consensus 94 H~~~gV~p~~f~~~~~~ll~~l~~~lg~~~t~-~AW~~~~~ 133 (145)
T 1yhu_A 94 HDPRTIDPVNFVVFRKALIATVAGTFGVCFDV-PAWQGCYN 133 (145)
T ss_dssp HGGGCCCTHHHHHHHHHHHHHHHHHHCTTCCH-HHHHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHccccCCH-HHHHHHHH
Confidence 345688999999999999999999855 676 88887643
No 143
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=24.41 E-value=97 Score=19.45 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHhC--CcchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHG--PLTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHG--PLTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+..+++.++| -+||.+. ++++|++
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~tv~~I---a~~agvs 42 (195)
T 3ppb_A 9 TKKQAILETALQLFVSQGFHGTSTATI---AREAGVA 42 (195)
T ss_dssp CHHHHHHHHHHHHHHHTCSTTSCHHHH---HHHHTCC
T ss_pred hHHHHHHHHHHHHHHhcCcccCCHHHH---HHHhCCC
Confidence 445678899999999999 4888865 6667775
No 144
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.23 E-value=84 Score=18.99 Aligned_cols=35 Identities=26% Similarity=0.505 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHH
Q 042237 31 RVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWM 73 (115)
Q Consensus 31 r~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWM 73 (115)
+.|.+.|++||+ +.|..+.+. |..++-.-+-.||.
T Consensus 18 ~~L~~~v~~~G~----~~W~~Ia~~----l~~Rt~~qcr~Rw~ 52 (70)
T 2dim_A 18 EILKAAVMKYGK----NQWSRIASL----LHRKSAKQCKARWY 52 (70)
T ss_dssp HHHHHHHHHTCS----SCHHHHHHH----STTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CCHHHHHHH----hcCCCHHHHHHHHH
Confidence 357788999996 579888774 33445555556664
No 145
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=24.01 E-value=86 Score=20.35 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHhC--CcchHhHHHHHHHhccCC
Q 042237 24 EQTQTITRVIFDIVKEHG--PLTVAETWERVQQAGVSG 59 (115)
Q Consensus 24 eqa~titr~l~dIvkeHG--PLTV~~tW~h~ke~g~~g 59 (115)
+-.+.|-++..+++.++| -+||.+. ++++|++-
T Consensus 13 ~~r~~Il~aa~~lf~~~G~~~~tv~~I---a~~agvs~ 47 (195)
T 2iu5_A 13 ITQKIIAKAFKDLMQSNAYHQISVSDI---MQTAKIRR 47 (195)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHH---HHHHTSCG
T ss_pred HHHHHHHHHHHHHHHhCCCCeeCHHHH---HHHhCCCH
Confidence 456789999999999999 4888875 77778763
No 146
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=23.95 E-value=1.3e+02 Score=18.63 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=32.5
Q ss_pred HHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhh
Q 042237 33 IFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICN 84 (115)
Q Consensus 33 l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~ 84 (115)
++..|.++||+|+++.=+ ..|+ |+.-+-.+++-|.++..|...-+
T Consensus 39 iL~~l~~~~~~~~~~la~---~l~~----~~~tvs~~l~~L~~~gli~r~~~ 83 (138)
T 1jgs_A 39 VLCSIRCAACITPVELKK---VLSV----DLGALTRMLDRLVCKGWVERLPN 83 (138)
T ss_dssp HHHHHHHHSSBCHHHHHH---HHTC----CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHhcCCCCHHHHHH---HHCC----ChHHHHHHHHHHHHCCCEEecCC
Confidence 566778899999998653 3344 57778888888888877765433
No 147
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=23.87 E-value=76 Score=21.33 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhcc
Q 042237 29 ITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHV 86 (115)
Q Consensus 29 itr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~hv 86 (115)
+-+.|.+.|.++|++|+++- +++.|+ |..-....|+-|.+...++.+-..+
T Consensus 11 ~~~~il~~L~~~~~~s~~el---a~~lg~----s~~tv~~~l~~L~~~G~i~~~~~~~ 61 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVEL---SERVAL----SPSPCLRRLKQLEDAGIVRQYAALL 61 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHH---HHHHTS----CHHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHH---HHHHCc----CHHHHHHHHHHHHHCCCEeeecccC
Confidence 34678999999999998875 344465 3555666677778887776544433
No 148
>3m4r_A Uncharacterized protein; short chain dehydrogenase, class II aldolase, adducin head D carbohydrate metabolism, structural genomics; 2.00A {Thermoplasma acidophilum}
Probab=23.82 E-value=6.6 Score=29.23 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHH-----HHHHhCCcchHhHHHHHHH
Q 042237 24 EQTQTITRVIFD-----IVKEHGPLTVAETWERVQQ 54 (115)
Q Consensus 24 eqa~titr~l~d-----IvkeHGPLTV~~tW~h~ke 54 (115)
|.++.|.+.+-+ |++.||++|++++.+.+-.
T Consensus 167 ela~~i~~~l~~~~~avlL~nHG~~~~G~t~~eA~~ 202 (222)
T 3m4r_A 167 TLAKEVMNCFKKGIDGIVLRKHGLLTFGDTGKEAYD 202 (222)
T ss_dssp HHHHHHHHHCCTTCSEEEETTTEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCEEECCCHHHHHH
Confidence 677777776642 5789999999998887654
No 149
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=23.62 E-value=83 Score=21.19 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=26.4
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHhC-CcchHhHH
Q 042237 17 IELKAPPEQTQTITRVIFDIVKEHG-PLTVAETW 49 (115)
Q Consensus 17 i~~k~p~eqa~titr~l~dIvkeHG-PLTV~~tW 49 (115)
++|...-||..++...+-++|.++| -++-.+.|
T Consensus 52 l~P~l~ee~~~~~ve~~~~iI~~~gG~i~~ve~W 85 (96)
T 2kjw_A 52 LNPNLDQSQLALEKEIIQRALENYGARVEKVEEL 85 (96)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHTCCCSCCEEC
T ss_pred eCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 5677888999999999999999987 35544555
No 150
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=23.57 E-value=68 Score=17.89 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=17.7
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 042237 22 PPEQTQTITRVIFDIVKEH 40 (115)
Q Consensus 22 p~eqa~titr~l~dIvkeH 40 (115)
..||-+.+++.|++.+.++
T Consensus 12 s~eqk~~l~~~i~~~l~~~ 30 (61)
T 2opa_A 12 TDEQKRNLVEKVTEAVKET 30 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999987
No 151
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=23.52 E-value=1.2e+02 Score=19.11 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICN 84 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~ 84 (115)
.++.+|.++||+|+++.=+. .|+ |+.-+-.+++-|.++..|...-+
T Consensus 44 ~iL~~l~~~~~~t~~ela~~---l~~----~~~~vs~~l~~Le~~Glv~r~~~ 89 (152)
T 3bj6_A 44 AILEGLSLTPGATAPQLGAA---LQM----KRQYISRILQEVQRAGLIERRTN 89 (152)
T ss_dssp HHHHHHHHSTTEEHHHHHHH---HTC----CHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHhCCCCCHHHHHHH---HCC----CHHHHHHHHHHHHHCCCeeecCC
Confidence 35667778899998876443 344 57888889999999887776543
No 152
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=23.47 E-value=58 Score=21.56 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=31.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCC--cc--hHhHHHHHHHhccC
Q 042237 19 LKAPPEQTQTITRVIFDIVKEHGP--LT--VAETWERVQQAGVS 58 (115)
Q Consensus 19 ~k~p~eqa~titr~l~dIvkeHGP--LT--V~~tW~h~ke~g~~ 58 (115)
+.+.||+=..+...|...|+++-+ .| +.+.|..+=..-..
T Consensus 91 ~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~ 134 (141)
T 2w72_C 91 LRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVST 134 (141)
T ss_dssp TCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 778999999999999999999944 44 45788877554333
No 153
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=23.36 E-value=54 Score=19.75 Aligned_cols=27 Identities=19% Similarity=0.545 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHh-CCcchHhHHHHHHHhccC
Q 042237 29 ITRVIFDIVKEH-GPLTVAETWERVQQAGVS 58 (115)
Q Consensus 29 itr~l~dIvkeH-GPLTV~~tW~h~ke~g~~ 58 (115)
.-+.|+++|+++ +|+|+++ =+++.|++
T Consensus 11 ~~~~IL~~L~~~~~~~s~~e---LA~~lgls 38 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQ---LVKKCQVP 38 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHH---HHHHHCSC
T ss_pred HHHHHHHHHHHcCCCcCHHH---HHHHHCcC
Confidence 356799999988 4899987 35555766
No 154
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=23.33 E-value=97 Score=19.89 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 25 QTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 25 qa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
.-..|-++-.+++.++|. +|+.+. ++++|++
T Consensus 8 ~~~~Il~aA~~lf~~~G~~~~t~~~I---A~~agvs 40 (192)
T 2zcm_A 8 MKDKIIDNAITLFSEKGYDGTTLDDI---SKSVNIK 40 (192)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCHHHH---HHHTTCC
T ss_pred hHHHHHHHHHHHHHHcCcccCCHHHH---HHHhCCC
Confidence 344788888899999995 788764 6667776
No 155
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=23.29 E-value=85 Score=23.95 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhCCcchHhHHHHHHHhccC
Q 042237 26 TQTITRVIFDIVKEHGPLTVAETWERVQQAGVS 58 (115)
Q Consensus 26 a~titr~l~dIvkeHGPLTV~~tW~h~ke~g~~ 58 (115)
....-+.|..+++ +||.|++.. +|.-|+|
T Consensus 9 v~erk~~ILE~Lk-~G~~~t~~I---ak~LGlS 37 (165)
T 2vxz_A 9 VLVRLRDILALLA-DGCKTTSLI---QQRLGLS 37 (165)
T ss_dssp HHHHHHHHHHHHT-TCCEEHHHH---HHHHTCC
T ss_pred HHHHHHHHHHHHH-hCCccHHHH---HHHhCCc
Confidence 4455678899999 999999864 5555666
No 156
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=23.25 E-value=90 Score=20.13 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=29.2
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHhCC--cc--hHhHHHHHH
Q 042237 16 PIELKAPPEQTQTITRVIFDIVKEHGP--LT--VAETWERVQ 53 (115)
Q Consensus 16 pi~~k~p~eqa~titr~l~dIvkeHGP--LT--V~~tW~h~k 53 (115)
+..+.+.||+=..+...|...|+++-+ .| +.+.|..+=
T Consensus 92 H~~~gv~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~ 133 (143)
T 1bin_A 92 HAQKAVTDPQFVVVKEALLKTIKAAVGDKWSDELSRAWEVAY 133 (143)
T ss_dssp HTTTTCCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 445688999999999999999999644 44 567787654
No 157
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=23.08 E-value=1.4e+02 Score=18.82 Aligned_cols=44 Identities=5% Similarity=0.080 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
.++.+|.++||+|+++-=+ ..|+ |+.-+-.+++=|.++..|...
T Consensus 41 ~iL~~l~~~~~~t~~eLa~---~l~~----~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 41 SVLEGIEANEPISQKEIAL---WTKK----DTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp HHHHHHHHHSSEEHHHHHH---HHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCcCHHHHHH---HHCC----CHhhHHHHHHHHHHCCCeecc
Confidence 3566778889999998643 3454 477888888888888776554
No 158
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=22.87 E-value=39 Score=25.88 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=26.5
Q ss_pred HHHHHHHh--CCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 33 IFDIVKEH--GPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 33 l~dIvkeH--GPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
|||+|.++ ||+|+++- ++..|+ ..+.+....+-||||-=--+.++
T Consensus 45 ifd~L~~~g~~~~t~~eL---A~~~g~--~~~~~~~~~l~rlLr~L~~~g~l 91 (364)
T 3p9c_A 45 LLEILVAAGGKSLTPTEV---AAKLPS--AANPEAPDMVDRILRLLASYNVV 91 (364)
T ss_dssp HHHHHHHTTTCCBCHHHH---HHTTTC--TTCTTHHHHHHHHHHHHHHTTSE
T ss_pred hHHHHhhcCCCCCCHHHH---HHhcCC--CCCccchhhHHHHHHHHHhCCCE
Confidence 89999998 59999875 344443 12233333566666644444433
No 159
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=22.87 E-value=77 Score=21.36 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 25 QTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 25 qa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 31 ~r~~Il~aA~~lf~~~G~~~~t~~~I---A~~Agvs 63 (230)
T 2iai_A 31 TPETLLSVAVQVFIERGYDGTSMEHL---SKAAGIS 63 (230)
T ss_dssp CCSCHHHHHHHHHHHHCTTTCCHHHH---HHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCccccCHHHH---HHHHCCC
Confidence 346788999999999996 788764 6666665
No 160
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=22.82 E-value=53 Score=21.06 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 14 ~~r~~Il~aa~~lf~~~G~~~~ti~~I---a~~agvs 47 (156)
T 3ljl_A 14 ITIQKIMDAVVDQLLRLGYDKMSYTTL---SQQTGVS 47 (156)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCHHHH---HHHHTCC
T ss_pred hHHHHHHHHHHHHHHHhChhhcCHHHH---HHHHCCC
Confidence 3467888999999999995 788865 6667776
No 161
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=22.79 E-value=91 Score=23.10 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
-|||+|. .||+|+++. ++..|++ . ..+-||||-=--+.+++
T Consensus 40 ~i~~~l~-~~~~t~~eL---A~~~g~~----~---~~l~r~Lr~L~~~Gll~ 80 (374)
T 1qzz_A 40 RLVDHLL-AGADTLAGL---ADRTDTH----P---QALSRLVRHLTVVGVLE 80 (374)
T ss_dssp THHHHHH-TTCCSHHHH---HHHHTCC----H---HHHHHHHHHHHHTTSEE
T ss_pred ChHHHHh-CCCCCHHHH---HHHhCcC----H---HHHHHHHHHHhhCCCEE
Confidence 3688884 599999863 4455653 2 34445554433344443
No 162
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.66 E-value=86 Score=21.52 Aligned_cols=33 Identities=12% Similarity=0.321 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCcchHhHHHHHHHhccC
Q 042237 23 PEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVS 58 (115)
Q Consensus 23 ~eqa~titr~l~dIvkeHGPLTV~~tW~h~ke~g~~ 58 (115)
..-.+.|-.+-.+++.++|-+|+.+. ++++|++
T Consensus 10 ~~~r~~Il~aA~~l~~~~G~~s~~~I---A~~aGvs 42 (213)
T 2g7g_A 10 RLDRERIAEAALELVDRDGDFRMPDL---ARHLNVQ 42 (213)
T ss_dssp -CCHHHHHHHHHHHHHHHSSCCHHHH---HHHTTSC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCHHHH---HHHhCCC
Confidence 34567899999999999998888764 5666765
No 163
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=22.65 E-value=1e+02 Score=19.36 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLIC 83 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C 83 (115)
.++.+|.++||+|+++.=+. .|+ |+.-+-.+++-|.++..|...-
T Consensus 44 ~iL~~l~~~~~~~~~~la~~---l~~----~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 44 LALLLLWEHETLTVKKMGEQ---LYL----DSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp HHHHHHHHHSEEEHHHHHHT---TTC----CHHHHHHHHHHHHHHTSEECCB
T ss_pred HHHHHHHHCCCCCHHHHHHH---HCC----CcCcHHHHHHHHHHCCCEEecc
Confidence 35667788999999876443 343 5777888899998887776543
No 164
>1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2 PDB: 1kfr_A*
Probab=22.65 E-value=1.7e+02 Score=19.74 Aligned_cols=38 Identities=5% Similarity=-0.039 Sum_probs=30.0
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHhCCcc--hHhHHHHHHH
Q 042237 16 PIELKAPPEQTQTITRVIFDIVKEHGPLT--VAETWERVQQ 54 (115)
Q Consensus 16 pi~~k~p~eqa~titr~l~dIvkeHGPLT--V~~tW~h~ke 54 (115)
+..+.+.||+=..+...|...|++| -.| +.+.|+.+=.
T Consensus 98 H~~~~V~p~~f~~~~~~Ll~~l~~~-~~t~e~~~AW~k~~~ 137 (147)
T 1h97_A 98 HTSRKVTKDEFMSGEPIFTKYFQNL-VKDAEGKAAVEKFLK 137 (147)
T ss_dssp TTTSSCCHHHHHHHHHHHHHHHHHH-SSSHHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 4456799999999999999999999 444 4577877644
No 165
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=22.56 E-value=1.3e+02 Score=18.76 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=29.9
Q ss_pred HHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 33 IFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 33 l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
++.+|. +||+|+++.=+ ..|+ |+.-+-.+|+-|.++..|...
T Consensus 42 iL~~l~-~~~~~~~ela~---~l~~----s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 42 VLRATS-DGPKTMAYLAN---RYFV----TQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp HHHHHT-TSCBCHHHHHH---HTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHh-cCCcCHHHHHH---HhCC----CchhHHHHHHHHHHCCCEEee
Confidence 445566 89999987644 3344 577888889999888777654
No 166
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=22.53 E-value=1.1e+02 Score=19.34 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHhC--CcchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHG--PLTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHG--PLTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+-.+++.++| -+||.+. ++++|++
T Consensus 11 ~~r~~il~aa~~lf~~~G~~~~tv~~I---a~~agvs 44 (196)
T 3he0_A 11 DKRDQILAAAEQLIAESGFQGLSMQKL---ANEAGVA 44 (196)
T ss_dssp CCHHHHHHHHHHHHHHHCTTTCCHHHH---HHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHH---HHHhCCC
Confidence 345678999999999999 5888875 6777776
No 167
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=22.24 E-value=1.1e+02 Score=20.73 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHhC--CcchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHG--PLTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHG--PLTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+-.+++.|+| -+||.+. ++++|++
T Consensus 44 ~~r~~Il~aA~~lf~e~G~~~~t~~~I---A~~aGvs 77 (236)
T 3q0w_A 44 DRELAILATAENLLEDRPLADISVDDL---AKGAGIS 77 (236)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHH---HHHHTCC
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHH---HHHhCCc
Confidence 344579999999999999 4888875 6777776
No 168
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=22.14 E-value=65 Score=20.80 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 26 TQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 26 a~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
.+.|-.+-.+++.++|. +||.+. ++++|++
T Consensus 10 r~~Il~AA~~l~~~~G~~~~t~~~I---A~~agvs 41 (195)
T 3frq_A 10 DDEVLEAATVVLKRCGPIEFTLSGV---AKEVGLS 41 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHH---HHHHTCC
T ss_pred HHHHHHHHHHHHHhhCcccCCHHHH---HHHhCCC
Confidence 67889999999999998 888875 6777876
No 169
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=22.14 E-value=1.3e+02 Score=18.80 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~I---a~~agvs 41 (194)
T 2g7s_A 8 SKADDILQCARTLIIRGGYNSFSYADI---SQVVGIR 41 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHH---HHHHCCC
T ss_pred hhHHHHHHHHHHHHHHcCcccCCHHHH---HHHhCCC
Confidence 5567888999999999995 788765 6777876
No 170
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=22.08 E-value=1e+02 Score=19.34 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+..+++.++|. +||.+. ++++|++
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~I---a~~agvs 37 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIEEI---AREAKVS 37 (170)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHH---HHHHTSC
T ss_pred HHHHHHHHHHHHHHHhcCCccCcHHHH---HHHhCCC
Confidence 4456788889999999996 888875 6777876
No 171
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.94 E-value=1.2e+02 Score=19.01 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=32.9
Q ss_pred HHHHHHHH-hCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhh
Q 042237 32 VIFDIVKE-HGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICN 84 (115)
Q Consensus 32 ~l~dIvke-HGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~ 84 (115)
.++..|.+ +||+|+++.=+. .|+ |+.-+-.+++-|.++..|...-+
T Consensus 39 ~iL~~l~~~~~~~~~~~la~~---l~i----~~~~vs~~l~~Le~~glv~r~~~ 85 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAA---ERM----RSSNLAALLRELERGGLIVRHAD 85 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHH---TTC----CHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHcCCCCCHHHHHHH---hCC----ChhhHHHHHHHHHHCCCEeeCCC
Confidence 35566677 999999987543 343 57788888999998877765433
No 172
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=21.74 E-value=1.4e+02 Score=18.93 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccCC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVSG 59 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~g 59 (115)
+-.+.|-.+..+++.++|. +||.+. ++++|++-
T Consensus 16 ~~r~~Il~aa~~l~~~~G~~~~t~~~I---a~~agvs~ 50 (211)
T 3him_A 16 KAAARIRAAAIEVFAAKGYGATTTREI---AASLDMSP 50 (211)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHH---HHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHH---HHHhCCCc
Confidence 4567899999999999994 788875 67777763
No 173
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=21.72 E-value=92 Score=20.00 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHH
Q 042237 26 TQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKL 79 (115)
Q Consensus 26 a~titr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~l 79 (115)
...+-+.|+.++.++|++|+++. ++..|+ |+.-+..+|+=|.+...|
T Consensus 6 ~~~~L~~i~~l~~~~~~~~~~el---a~~l~v----s~~tvs~~l~~Le~~Glv 52 (142)
T 1on2_A 6 MEMYIEQIYMLIEEKGYARVSDI---AEALAV----HPSSVTKMVQKLDKDEYL 52 (142)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHH---HHHHTS----CHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHhhcCCCCHHHH---HHHhCC----CHHHHHHHHHHHHHCCCE
Confidence 34456678888889999999865 334454 355556666666555444
No 174
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=21.65 E-value=1.4e+02 Score=18.84 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccCC
Q 042237 25 QTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVSG 59 (115)
Q Consensus 25 qa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~g 59 (115)
-.+.|-.+-.+++.++|. +|+.+. ++++|++-
T Consensus 8 ~r~~Il~aA~~l~~~~G~~~~s~~~I---A~~agvs~ 41 (180)
T 2fd5_A 8 TRARILGAATQALLERGAVEPSVGEV---MGAAGLTV 41 (180)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCHHHH---HHHTTCCG
T ss_pred CHHHHHHHHHHHHHHhCcccCCHHHH---HHHhCCCc
Confidence 446788899999999995 888865 67778763
No 175
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=21.65 E-value=76 Score=25.96 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCcchHhHHHHHHH
Q 042237 28 TITRVIFDIVKEHGPLTVAETWERVQQ 54 (115)
Q Consensus 28 titr~l~dIvkeHGPLTV~~tW~h~ke 54 (115)
.+...|.+.|+..||||+++-.+.+=-
T Consensus 6 ~L~~~i~~~I~~~G~i~f~~fM~~aLy 32 (387)
T 1zkd_A 6 ALATEIKRLIKAAGPMPVWRYMELCLG 32 (387)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeeHHHHHHHHhc
Confidence 366778888889999999999887753
No 176
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=21.61 E-value=87 Score=20.99 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=25.5
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHhCC-cchHhHHH
Q 042237 17 IELKAPPEQTQTITRVIFDIVKEHGP-LTVAETWE 50 (115)
Q Consensus 17 i~~k~p~eqa~titr~l~dIvkeHGP-LTV~~tW~ 50 (115)
++|....||..++...+-++|.++|- +.=.+.|+
T Consensus 16 l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG 50 (110)
T 2j5a_A 16 VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWG 50 (110)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 46777889999999999999999873 44344443
No 177
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=21.33 E-value=1.1e+02 Score=19.34 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhC--CcchHhHHHHHHHhccC
Q 042237 25 QTQTITRVIFDIVKEHG--PLTVAETWERVQQAGVS 58 (115)
Q Consensus 25 qa~titr~l~dIvkeHG--PLTV~~tW~h~ke~g~~ 58 (115)
-.+.|-++-.+++.++| -+||.+. ++++|++
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~t~~~I---a~~agvs 41 (183)
T 1zk8_A 9 TLQKIVETAAEIADANGVQEVTLASL---AQTLGVR 41 (183)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHH---HHHHTSC
T ss_pred HHHHHHHHHHHHHHhcCccccCHHHH---HHHcCCC
Confidence 35678899999999999 4788865 6777776
No 178
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=21.26 E-value=75 Score=21.15 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=34.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCC--cc--hHhHHHHHHHhccCCCCch
Q 042237 19 LKAPPEQTQTITRVIFDIVKEHGP--LT--VAETWERVQQAGVSGLTGK 63 (115)
Q Consensus 19 ~k~p~eqa~titr~l~dIvkeHGP--LT--V~~tW~h~ke~g~~gL~SK 63 (115)
+.+.||+=..+...|...|+++-+ .| |.+.|+.+=..-...|.++
T Consensus 92 ~~V~p~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~v~~~l~~~ 140 (142)
T 3d1k_A 92 LRVDPSNFKILNHCILVVISTMFPKEFTPEAHVSLDKFLSGVALALAER 140 (142)
T ss_dssp SCCCGGGHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCCChHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhh
Confidence 789999999999999999999955 44 4578988766555444444
No 179
>1u5l_A Prion protein; pRNP, PRP, TSE, membrane protein; NMR {Trachemys scripta} SCOP: d.6.1.1
Probab=21.23 E-value=1.7e+02 Score=20.83 Aligned_cols=36 Identities=6% Similarity=-0.022 Sum_probs=23.5
Q ss_pred hHhHHHHHHHhccCCC-----CchhHHHHHHHHHHhhhHHH
Q 042237 45 VAETWERVQQAGVSGL-----TGKSHMKIVLRWMRERQKLR 80 (115)
Q Consensus 45 V~~tW~h~ke~g~~gL-----~SK~HMKi~LrWMreRq~lk 80 (115)
|.+|-|--+.+..-++ .|++|-|||-||.+|.=+++
T Consensus 59 V~dCvNiTv~~~~~~~s~~kn~sel~~rVl~rvI~EmC~~q 99 (108)
T 1u5l_A 59 VRDCVNITVTEYKIDPNENQNVTQVEVRVMKQVIQEMCMQQ 99 (108)
T ss_dssp HHHHHHHHHHHTTCCTTTTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHhhccccccCcchHHHHHHHHHHHHHHHHHH
Confidence 4555554443333233 67899999999999975543
No 180
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.22 E-value=74 Score=21.12 Aligned_cols=46 Identities=20% Similarity=0.371 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 30 TRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 30 tr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
-+.|.+.|.++|++|+++- +++.|++ ..=....|+-|.+...++.+
T Consensus 9 ~~~il~~L~~~~~~s~~el---a~~lg~s----~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREI---SKITGLA----ESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHH---HHHHCSC----HHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHH---HHHHCcC----HHHHHHHHHHHHHCCCeEEE
Confidence 4578899999999999875 4445654 45556667777787777654
No 181
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=21.14 E-value=1.3e+02 Score=17.36 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhh-----hHHHHhhhccCCCcceeee
Q 042237 23 PEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRER-----QKLRLICNHVGPHKQFLYT 95 (115)
Q Consensus 23 ~eqa~titr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreR-----q~lkl~C~hvG~~k~FLyt 95 (115)
.++...|...|-.+-++.| +|..+. ++..|++ -.-+-+|.+|+ ..|..+|.-.|-+..+|+.
T Consensus 9 ~~~~~~~~~~l~~~R~~~g-ltq~el---A~~~gis-------~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~~l~~ 75 (83)
T 3f6w_A 9 NARYQALLDLLLEARSAAG-ITQKEL---AARLGRP-------QSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLS 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CCHHHH---HHHHTSC-------HHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcC-CCHHHH---HHHHCcC-------HHHHHHHHCCCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3566788999999999999 676643 5555765 24577888887 5677888888776666543
No 182
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=21.14 E-value=1.2e+02 Score=19.62 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 25 QTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 25 qa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
-.+.|-.+..+++.|+|. +||.+. ++++|++
T Consensus 5 ~r~~Il~aa~~l~~~~G~~~~t~~~I---a~~agvs 37 (185)
T 2yve_A 5 KKEMILRTAIDYIGEYSLETLSYDSL---AEATGLS 37 (185)
T ss_dssp HHHHHHHHHHHHHHHSCSTTCCHHHH---HHHHCCC
T ss_pred HHHHHHHHHHHHHHHcChhhccHHHH---HHHhCCC
Confidence 356788999999999995 888875 6777876
No 183
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=20.87 E-value=82 Score=19.70 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237 32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI 82 (115)
Q Consensus 32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~ 82 (115)
.++.+|.++||+|+++.=+.+ |+ |+.-+-.+++-|.++..|...
T Consensus 37 ~iL~~l~~~~~~~~~~la~~l---~~----s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 37 DILQKIYFEGPKRPGELSVLL---GV----AKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp HHHHHHHHHCCBCHHHHHHHH---TC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CC----CchhHHHHHHHHHHCCCeeec
Confidence 356677789999999875543 44 577888899999888776653
No 184
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=20.72 E-value=58 Score=20.08 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHH
Q 042237 31 RVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLR 80 (115)
Q Consensus 31 r~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lk 80 (115)
..|+..| .+||+|+++-=+ ..|++ +.-....|+=|.+...|.
T Consensus 24 ~~IL~~L-~~~~~~~~ela~---~l~is----~~tv~~~l~~L~~~gli~ 65 (114)
T 2oqg_A 24 WEILTEL-GRADQSASSLAT---RLPVS----RQAIAKHLNALQACGLVE 65 (114)
T ss_dssp HHHHHHH-HHSCBCHHHHHH---HSSSC----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHH-HcCCCCHHHHHH---HHCcC----HHHHHHHHHHHHHCCCee
Confidence 3467777 789999998643 33543 445555566666665554
No 185
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} SCOP: a.1.1.0 PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A* 3pt7_A* 3pi2_A*
Probab=20.63 E-value=1.3e+02 Score=19.97 Aligned_cols=39 Identities=8% Similarity=0.142 Sum_probs=31.0
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHhCC-cc--hHhHHHHHHHhc
Q 042237 17 IELKAPPEQTQTITRVIFDIVKEHGP-LT--VAETWERVQQAG 56 (115)
Q Consensus 17 i~~k~p~eqa~titr~l~dIvkeHGP-LT--V~~tW~h~ke~g 56 (115)
.+..+.||+=..+...|...|++ |+ .| +.+.|..+=..=
T Consensus 99 ~~~gV~p~~f~~~~~~ll~~l~~-g~~~t~e~~~AW~~~~~~v 140 (152)
T 3pt8_A 99 NNRGIRASDLRTAYDILIHYMED-HNHMVGGAKDAWEVFVGFI 140 (152)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHH-TTCCCTTHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHH-cCcCCHHHHHHHHHHHHHH
Confidence 34578899999999999999999 54 44 678898876543
No 186
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=20.47 E-value=92 Score=18.79 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.6
Q ss_pred CChhHHHHHHHHHHHHHHHhC
Q 042237 21 APPEQTQTITRVIFDIVKEHG 41 (115)
Q Consensus 21 ~p~eqa~titr~l~dIvkeHG 41 (115)
...||-+.+++.|++.+.++=
T Consensus 12 ls~eqk~~L~~~l~~~l~~~l 32 (76)
T 1gyx_A 12 LDEQQKAALAADITDVIIRHL 32 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999973
No 187
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=20.47 E-value=1.3e+02 Score=19.00 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 27 QTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 27 ~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+.|-++..+++.++|. +||.+. ++++|++
T Consensus 5 ~~Il~aa~~l~~~~G~~~~ti~~I---a~~agvs 35 (194)
T 3bqz_B 5 DKILGVAKELFIKNGYNATTTGEI---VKLSESS 35 (194)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHH---HHHTTCC
T ss_pred HHHHHHHHHHHHHcCCccCCHHHH---HHHhCCC
Confidence 5677888889999985 777764 6666765
No 188
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=20.29 E-value=1.1e+02 Score=20.24 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=29.2
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhCC--cchHhHHHHHHH
Q 042237 18 ELKAPPEQTQTITRVIFDIVKEHGP--LTVAETWERVQQ 54 (115)
Q Consensus 18 ~~k~p~eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke 54 (115)
...+.||+=..+...|...|+++-+ .|- +.|+.+=.
T Consensus 98 ~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~-~AW~~~~~ 135 (145)
T 1x9f_B 98 GRKIPDNYFDAFKTAILHVVAAQLGRCYDR-EAWDACID 135 (145)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHTTSCCH-HHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHH
Confidence 3478899999999999999999855 676 88877643
No 189
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=20.25 E-value=1.1e+02 Score=24.60 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=45.8
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhH--------------HHHHHHHHHhhhHHHHhhh
Q 042237 20 KAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSH--------------MKIVLRWMRERQKLRLICN 84 (115)
Q Consensus 20 k~p~eqa~titr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~H--------------MKi~LrWMreRq~lkl~C~ 84 (115)
.+++++...+-.-.++.+++++.++.+. +.++++=-+.|...+- +=-.|+||-.++...++-|
T Consensus 51 ~v~~~~~~~Vl~EF~~~~~~~~~i~~gg--~~~~~~L~~aLg~~~A~~ll~~i~~~~~~~~~~~L~~~dp~~la~~i~~ 127 (329)
T 3hjl_A 51 SVPEEEIENIAEELLDEIKKAGIKIKKP--EEFIENIKKVIPPTLAEKFRGILELGDAEKILKEIEKVDSRILASLLKN 127 (329)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCCSCH--HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCch--HHHHHHHHHhCCHHHHHHHHHHHhccccCCHHHHHHCCCHHHHHHHHHh
Confidence 5789999999999999999999998887 8888762222222221 2235788888887777765
No 190
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=20.16 E-value=1.6e+02 Score=19.43 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-.+-.+++.|+|. +|+.+. ++++|++
T Consensus 12 ~tr~~Il~aA~~l~~e~G~~~~s~~~I---A~~agvs 45 (198)
T 3cjd_A 12 ALREKLIDLAEAQIEAEGLASLRAREL---ARQADCA 45 (198)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHH---HHHHTSC
T ss_pred HHHHHHHHHHHHHHHhCChhhcCHHHH---HHHhCCC
Confidence 3455788889999999997 777654 3444443
No 191
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=20.15 E-value=1.5e+02 Score=18.95 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHhCC--cchHhHHHHHHHhccC
Q 042237 24 EQTQTITRVIFDIVKEHGP--LTVAETWERVQQAGVS 58 (115)
Q Consensus 24 eqa~titr~l~dIvkeHGP--LTV~~tW~h~ke~g~~ 58 (115)
+-.+.|-++..+++.++|. +||.+. ++++|++
T Consensus 7 ~~r~~Il~aA~~l~~~~G~~~~t~~~I---a~~agvs 40 (195)
T 2dg7_A 7 GAEQRLKRAALELYSEHGYDNVTVTDI---AERAGLT 40 (195)
T ss_dssp THHHHHHHHHHHHHHHSCGGGCCHHHH---HHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcCccccCHHHH---HHHhCCC
Confidence 4567899999999999995 688764 6777776
No 192
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=20.12 E-value=47 Score=24.25 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=34.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCCcchHhHHHH-----------HHHhccCCCCchhHHHHHH
Q 042237 19 LKAPPEQTQTITRVIFDIVKEHGPLTVAETWER-----------VQQAGVSGLTGKSHMKIVL 70 (115)
Q Consensus 19 ~k~p~eqa~titr~l~dIvkeHGPLTV~~tW~h-----------~ke~g~~gL~SK~HMKi~L 70 (115)
.+...||.+ +.|.+.|+++|-+||++-=+. ++|-++.||--..|--...
T Consensus 6 ~~m~k~eR~---~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~l~~r~~~~A~~ 65 (190)
T 4a0z_A 6 LKLKKDKRR---EAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIKLVAEK 65 (190)
T ss_dssp -CHHHHHHH---HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred cccCHHHHH---HHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcchhhHhhhhhhc
Confidence 445567777 689999999999999875443 5677777776666655443
No 193
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=20.07 E-value=50 Score=22.21 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHH
Q 042237 30 TRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKL 79 (115)
Q Consensus 30 tr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~l 79 (115)
-+.|++.|++|||=+.=. -+|+.|+ ++..+----|-=|+.+..|
T Consensus 12 ee~I~~fL~~~Gp~~AL~---IAK~LGl---ktAK~VNp~LY~m~~~~lL 55 (72)
T 3eyi_A 12 EEDIYRFLKDNGPQRALV---IAQALGM---RTAKDVNRDLYRMKSRHLL 55 (72)
T ss_dssp HHHHHHHHHHHCSEEHHH---HHHHTTC---CSGGGTHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCchHHH---HHHHhCc---chhhhcCHHHHHHHHccCc
Confidence 467999999999976543 3566554 4444444455556555444
Done!