Query 042238
Match_columns 459
No_of_seqs 143 out of 1208
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 06:55:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bgh_A Vinorine synthase; VS, 100.0 6.8E-77 2.3E-81 609.8 39.7 410 5-442 3-420 (421)
2 4g22_A Hydroxycinnamoyl-COA sh 100.0 1.7E-76 5.8E-81 610.0 40.9 404 2-429 3-434 (439)
3 2e1v_A Acyl transferase; BAHD 100.0 1.4E-69 4.9E-74 561.0 34.9 412 1-435 1-448 (454)
4 2xr7_A Malonyltransferase; xen 100.0 1.7E-69 5.7E-74 560.4 33.3 408 7-436 2-449 (453)
5 2rkv_A Trichothecene 3-O-acety 100.0 7.6E-63 2.6E-67 510.4 35.3 395 28-440 5-450 (451)
6 1q9j_A PAPA5, polyketide synth 99.0 1.1E-07 3.8E-12 95.9 24.1 273 26-333 6-314 (422)
7 2jgp_A Tyrocidine synthetase 3 98.5 3.5E-05 1.2E-09 79.9 26.7 268 26-333 95-401 (520)
8 2xhg_A Tyrocidine synthetase A 98.4 7.5E-05 2.6E-09 76.0 25.8 281 26-333 16-336 (466)
9 1l5a_A Amide synthase, VIBH; n 98.4 1.2E-05 4.1E-10 81.2 19.5 241 63-333 34-305 (436)
10 4hvm_A Tlmii; PSI-biology, mid 98.3 6.4E-05 2.2E-09 77.3 23.2 274 26-333 12-328 (493)
11 2vsq_A Surfactin synthetase su 98.1 0.00022 7.4E-09 82.4 21.9 250 63-333 48-328 (1304)
12 3fot_A 15-O-acetyltransferase; 97.8 0.0011 3.7E-08 68.7 18.9 155 153-312 178-365 (519)
13 3cla_A Type III chloramphenico 67.2 4.6 0.00016 36.2 4.0 44 138-181 164-209 (213)
14 2i9d_A Chloramphenicol acetylt 65.9 5 0.00017 36.0 4.0 43 138-180 172-216 (217)
15 1q23_A Chloramphenicol acetylt 65.3 5.2 0.00018 36.0 4.0 43 138-181 168-213 (219)
16 3rqc_A Probable lipoamide acyl 62.4 5.4 0.00018 36.0 3.6 30 153-182 187-216 (224)
17 1scz_A E2, dihydrolipoamide su 61.2 6.8 0.00023 35.6 4.0 30 153-182 196-225 (233)
18 3b8k_A PDCE2;, dihydrolipoylly 60.9 6.2 0.00021 36.0 3.7 29 153-181 204-232 (239)
19 1dpb_A Dihydrolipoyl-transacet 60.8 6.9 0.00024 35.8 4.0 29 153-181 208-236 (243)
20 2ii3_A Lipoamide acyltransfera 59.1 7.6 0.00026 35.9 4.0 29 153-181 224-252 (262)
21 3mae_A 2-oxoisovalerate dehydr 53.2 11 0.00038 34.7 4.0 31 153-183 210-240 (256)
22 3l60_A Branched-chain alpha-ke 51.6 12 0.00041 34.3 4.0 30 153-182 205-234 (250)
23 2xl1_A Arginine attenuator pep 38.8 18 0.00061 19.7 1.7 19 249-267 6-24 (26)
24 2k1o_A Putative; repressor, tr 38.6 74 0.0025 21.7 5.1 43 222-271 13-55 (66)
25 1x93_A Hypothetical protein HP 33.1 52 0.0018 21.6 3.6 38 225-269 2-39 (55)
26 3dva_I Dihydrolipoyllysine-res 31.1 10 0.00035 37.7 0.0 30 153-182 391-420 (428)
No 1
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=100.00 E-value=6.8e-77 Score=609.76 Aligned_cols=410 Identities=34% Similarity=0.546 Sum_probs=343.4
Q ss_pred ceEEEEEeeEeeCCCCCCCCCccccCCcccccccCccccEEEEecCCCCCCcccchhhhHHHHHHHHHHhcccCCCCCce
Q 042238 5 LEVEIVAKEAIKPSYPTPHYLRNFKRSLMDQINYPMYTTGIFIYKVNDDDDLSVKAGRISRRLKSSLSETLTKFYPFAGK 84 (459)
Q Consensus 5 ~~v~v~~~~~V~p~~p~~~~~~~~~LS~lD~~~~~~y~~~~~~f~~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGr 84 (459)
|+|+|.++++|+|+.|+|.+.+.++||+||++.++.|++.+|||+.++..+ .+....+++||+||+++|++||+||||
T Consensus 3 m~v~v~~~~~V~P~~ptp~~~~~~~LS~lD~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~Lk~sLs~~L~~~~plAGR 80 (421)
T 2bgh_A 3 PQMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSN--LDPAQTSQHLKQSLSKVLTHFYPLAGR 80 (421)
T ss_dssp -CEEEEEEEEEECSSCCCTTSCCCBCCHHHHTSCSSEEEEEEEECCCSSCC--CCHHHHHHHHHHHHHHHTTTSGGGGSE
T ss_pred ceEEEeeeEEEeCCCCCCCCCcccCCChHHhcccccccceEEEEeCCCccc--cchhhHHHHHHHHHHHHhhhcchhccc
Confidence 789999999999999998766789999999987789999999999754310 134578999999999999999999999
Q ss_pred ecCCceeEeCCCCeEEEEEEeccChhhhcCC-CChhhhcccCCCCCCCCC--CCCCCCeEEEEEEEEecCcEEEEeeecc
Q 042238 85 VKDDFSIECNDDGVEFIEGRANGFLSQYLQE-PDHNLLSEFHPFGKEGPV--AGKDSPLLIVQATFFKCGGVAIATCASH 161 (459)
Q Consensus 85 v~~~~~i~~~~~gv~f~~a~~~~~~~~l~~~-p~~~~~~~l~p~~~~~~~--~~~~~Pll~vQvt~~~cGG~iL~~~~~H 161 (459)
|+++++|+|+++|+.|++++++.+++|+... |....++.|+|....... ...+.|++.+|+|+|+|||++||+++||
T Consensus 81 l~~~~~i~c~~~Gv~fv~A~~d~~l~~~~~~~p~~~~~~~l~p~~~~~~~~~~~~~~pll~vQvt~f~cgG~~lg~~~~H 160 (421)
T 2bgh_A 81 INVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSH 160 (421)
T ss_dssp EETTTEEECCCCCEEEEEEEESSCHHHHHSCCSSGGGGGGGSSSCSSSSSSSCCCTTCSEEEEEEECTTSCEEEEEEEET
T ss_pred cCCCcEEEEcCCceEEEEEEEcCCHHHHhccCCChHHHHhcCCCCCCccccccccCCceEEEEEEEEcCCCEEEEEEeeE
Confidence 9988999999999999999999999999765 655567788887621100 0345899999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccc-ccCCCC-CCCCCCCCCCCCCCCCeeEEEEEEcHHHHHHH
Q 042238 162 VLIDGMSLATFINCWAATARVDDHHQPSKLPASMLPQYVT-ASLFPA-SEAVSSYPLRFSPSERVEFNRFVFDASKIAQL 239 (459)
Q Consensus 162 ~v~Dg~g~~~fl~~wa~~~rg~~~~~~~~~~~~~~P~~dr-~~l~~~-~~~~p~~~~~~~~~~~~~~~~f~~s~~~l~~L 239 (459)
.++||.|+.+|+++||++|||.. .. ..|.+|| ..+.++ ++. +. +.+....++..++|+|++++|++|
T Consensus 161 ~v~Dg~~~~~fl~~wa~~~rg~~----~~----~~P~~dr~~~l~p~~~~~-~~--~~~~~~~~~~~~~f~f~~~~i~~L 229 (421)
T 2bgh_A 161 KIADVLSLATFLNAWTATCRGET----EI----VLPNFDLAARHFPPVDNT-PS--PELVPDENVVMKRFVFDKEKIGAL 229 (421)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCS----CC----CCCBCSHHHHHSCCCTTC-CC--CCCCCCSSEEEEEEEECHHHHHHH
T ss_pred EechHHHHHHHHHHHHHHhcCCC----CC----CCCccccccccCCCcccC-CC--CccCCccceEEEEEEECHHHHHHH
Confidence 99999999999999999999875 22 4688998 766655 444 22 223345678999999999999999
Q ss_pred HHHHhcCCC-CCCChhHHHHHHHHHHHHhhccCCCCCCCCceEEEEEeeCCcccCCCCCCCCcccceeeeeeeecCCc-c
Q 042238 240 KAEAASEIV-PRPSTVEAITALIWKCTRTASRSNHGGSPRPSLLLQGANFRTELVPPLPDNSVGNCVGYAVAQTGEKE-T 317 (459)
Q Consensus 240 k~~~~~~~~-~~~St~D~l~A~lW~~~~~ar~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~~~e-~ 317 (459)
|+.+.++.. .++|+||+|+||+|+|+++||.... ++++++.+.++||+|+|++||+|++|+||++..+.+.+++++ .
T Consensus 230 K~~a~~~~~~~~~St~d~l~A~iW~~~~~Ar~~~~-~~~~~~~l~~~vd~R~rl~pplP~~y~GN~~~~~~~~~~~~~~~ 308 (421)
T 2bgh_A 230 RAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKY-GAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDK 308 (421)
T ss_dssp HHHTC-----CCCCHHHHHHHHHHHHHHHHHHHHS-CCCSCEEEEEEEESGGGSSSCCCTTBCSCCEEEEEEEECTTCCC
T ss_pred HHHhhccCCCCCCchhHhHHHHHHHHHHHHhcccC-CCCCceEEEEEecCccccCCCCCCCccceEEEEEEEEecccccc
Confidence 999976543 6899999999999999999986532 335689999999999999999999999999999988888765 7
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhhhccccCCCcceEEEecccCCCCCCcccccCCccceeeecc-c
Q 042238 318 KLQDLVCELRRAKEEFSRNGLQTLLENKCLLTIQDQSIRDKFESGEIDFFSFTSVVRFPFYQAADFGWGKPIHVTFLN-F 396 (459)
Q Consensus 318 ~l~~~A~~iR~ai~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ssw~~~~~~~~~DFG~G~P~~v~~~~-~ 396 (459)
+|+++|..||+++.++++++++.+.+ +.+. +. .. ...+.+++|||+++++|+ +|||||+|.++++.. +
T Consensus 309 ~l~~~a~~ir~ai~~~~~~~~~~~~~------~~~~-~~-~~--~~~~~~~vssw~~~~~y~-~DFGwGkP~~v~~~~~~ 377 (421)
T 2bgh_A 309 DFPDLIGPLRTSLEKTEDDHNHELLK------GMTC-LY-EL--EPQELLSFTSWCRLGFYD-LDFGWGKPLSACTTTFP 377 (421)
T ss_dssp CGGGGHHHHHHHTCCCSSCHHHHHHH------HHHH-HH-TS--CGGGEEEEEEETTSCGGG-CCSSSCCCSEEECCCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-hh-cc--CCCCeEEEeccccCCCcc-cccCCCccCeecccccC
Confidence 99999999999999999888886543 2221 22 11 123469999999999999 999999999999877 5
Q ss_pred ccCcEEEEeecCCCCcEEEEEecCHHHHHHhhcCHHHHhhhcCCCC
Q 042238 397 VSPNFFMLMATNDGTGVEALVSLSPEDMVLFQRNQELLAFTTLNPP 442 (459)
Q Consensus 397 ~~~g~v~i~p~~~~~g~ev~v~L~~~~m~~l~~D~~~~~~~~~~~~ 442 (459)
. +|+++++|+++++|++|.|+|++++|++|++ ||.+|++++++
T Consensus 378 ~-~g~~~~~p~~~~~gi~v~v~L~~~~m~~f~~--e~~~~~~~~~~ 420 (421)
T 2bgh_A 378 K-RNAALLMDTRSGDGVEAWLPMAEDEMAMLPV--ELLSLVDSDFS 420 (421)
T ss_dssp S-TTEEEEEECTTSSSEEEEEEEEHHHHHHSCH--HHHTTBCCCCC
T ss_pred c-CCEEEEEecCCCCeEEEEEEcCHHHHHHHHH--HHHHhhcCCCC
Confidence 4 7999999998878999999999999999999 99999999976
No 2
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=100.00 E-value=1.7e-76 Score=609.96 Aligned_cols=404 Identities=25% Similarity=0.384 Sum_probs=328.4
Q ss_pred CCcceEEEEEeeEeeCCCCCCCCCccccCCcccccccCccccEEEEecCCCCCCcccchhhhHHHHHHHHHHhcccCCCC
Q 042238 2 GRALEVEIVAKEAIKPSYPTPHYLRNFKRSLMDQINYPMYTTGIFIYKVNDDDDLSVKAGRISRRLKSSLSETLTKFYPF 81 (459)
Q Consensus 2 ~~~~~v~v~~~~~V~p~~p~~~~~~~~~LS~lD~~~~~~y~~~~~~f~~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~L 81 (459)
|..|+|+|.++++|+|+.|+|. +.++||+||+..++.|++.+|||+.++. +....+++||+||+++|++||+|
T Consensus 3 m~~~~V~i~~~~~V~P~~~tp~--~~~~LS~lD~~~~~~~~~~~~~y~~~~~-----~~~~~~~~Lk~sLs~~L~~f~pl 75 (439)
T 4g22_A 3 MGSMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGS-----SNFFDAKVLKDALSRALVPFYPM 75 (439)
T ss_dssp ---CCEEEEEEEEECCSSCCCC--CEECCCHHHHSCCTTCCCEEEEECCCSC-----TTTTCHHHHHHHHHHHTTTTGGG
T ss_pred CCceEEEEeeeEEEeCCCCCCC--CeecCChhHhCccccceeeEEEEcCCCC-----ccccHHHHHHHHHHHHHhhcccc
Confidence 4568999999999999999875 5799999999988999999999997543 22356899999999999999999
Q ss_pred Cceec----CCceeEeCCCCeEEEEEEeccChhhhcCCCChhhhcccCCCCCCCCCCCCCCCeEEEEEEEEecCcEEEEe
Q 042238 82 AGKVK----DDFSIECNDDGVEFIEGRANGFLSQYLQEPDHNLLSEFHPFGKEGPVAGKDSPLLIVQATFFKCGGVAIAT 157 (459)
Q Consensus 82 aGrv~----~~~~i~~~~~gv~f~~a~~~~~~~~l~~~p~~~~~~~l~p~~~~~~~~~~~~Pll~vQvt~~~cGG~iL~~ 157 (459)
||||+ ++++|+||++||.|++|++|.+++|+........++.|+|..+.. .+..+.|++.+|+|+|+|||++||+
T Consensus 76 AGRl~~~~~g~~~i~c~~~Gv~fv~A~~d~~l~~l~~~~p~~~~~~l~p~~~~~-~~~~~~pll~vQvT~f~cGG~~lg~ 154 (439)
T 4g22_A 76 AGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYS-QGISSYALLVLQVTYFKCGGVSLGV 154 (439)
T ss_dssp GCEEEECTTSCEEEECCCCCEEEEEEEESSCGGGGTTCCCCGGGGGGSCCCCTT-SCTTSSCSEEEEEEECTTSCEEEEE
T ss_pred ceeeeeCCCCCEEEEECCCCCEEEEEEcCCcHHHhcCCCCCHHHHhcCCCCCcc-cccccCceeEEEEEEecCCCEEEEE
Confidence 99997 479999999999999999999999997532223567788865431 2234589999999999999999999
Q ss_pred eecccccchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCccccccCCC---CCC-C-CCCCCC------C----CCCC-
Q 042238 158 CASHVLIDGMSLATFINCWAATARVDDHHQPSKLPASMLPQYVTASLFP---ASE-A-VSSYPL------R----FSPS- 221 (459)
Q Consensus 158 ~~~H~v~Dg~g~~~fl~~wa~~~rg~~~~~~~~~~~~~~P~~dr~~l~~---~~~-~-~p~~~~------~----~~~~- 221 (459)
++||.++||.|+.+|+++||++|||.. . . ..|++||+.+.+ |.. . +..+.+ . +...
T Consensus 155 ~~~H~v~Dg~~~~~Fl~~wa~~~rg~~----~-~---~~P~~dr~~l~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (439)
T 4g22_A 155 GMRHHAADGFSGLHFINSWSDMARGLD----V-T---LPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSV 226 (439)
T ss_dssp EECTTTCCHHHHHHHHHHHHHHHTTCC----C-S---SCCBCCGGGGCCCSSCCCSSCCGGGSCCC--------------
T ss_pred EeeeccCcHHHHHHHHHHHHHHhCCCC----C-C---CCCccccccccCCCCCCCCcCcccccCCCCCcccccccccCCc
Confidence 999999999999999999999999975 2 3 578999976532 110 0 111110 0 0112
Q ss_pred CCeeEEEEEEcHHHHHHHHHHHhcCC-CCCCChhHHHHHHHHHHHHhhccCCCCCCCCceEEEEEeeCCcccCCCCCCCC
Q 042238 222 ERVEFNRFVFDASKIAQLKAEAASEI-VPRPSTVEAITALIWKCTRTASRSNHGGSPRPSLLLQGANFRTELVPPLPDNS 300 (459)
Q Consensus 222 ~~~~~~~f~~s~~~l~~Lk~~~~~~~-~~~~St~D~l~A~lW~~~~~ar~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y 300 (459)
.++..++|+|++++|++||+++.++. ..++|+||+|+||+|+|++|||...+ ++.+.+.++||+|+|++||+|++|
T Consensus 227 ~~~~~~~f~fs~~~i~~LK~~a~~~~~~~~~St~dal~A~iWr~~~rAr~~~~---~~~~~l~~~vd~R~rl~Pplp~~Y 303 (439)
T 4g22_A 227 PETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV---DQGTKLYIATDGRARLRPSLPPGY 303 (439)
T ss_dssp -CEEEEEEEECHHHHHHHHHGGGGGGCCCCCCHHHHHHHHHHHHHHHHTTCCT---TCEEEEEEEEECTTTSSSCCCTTB
T ss_pred ccceEEEEEECHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHHHhcCCCC---CCcEEEEEEEcccCCCCCCCCCCc
Confidence 57899999999999999999998653 46899999999999999999997533 578999999999999999999999
Q ss_pred cccceeeeeeeecCCc---ccHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhh--hhhccccCCCcceEEEecccCC
Q 042238 301 VGNCVGYAVAQTGEKE---TKLQDLVCELRRAKEEFSRNGLQTLLENKCLLTIQDQ--SIRDKFESGEIDFFSFTSVVRF 375 (459)
Q Consensus 301 ~GN~~~~~~~~~~~~e---~~l~~~A~~iR~ai~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ssw~~~ 375 (459)
+||++..+.+.++++| .+|+++|..||+++.+++++|+++.++ |++..++ .+.......+...+++|||+++
T Consensus 304 ~GN~v~~~~~~~~~~el~~~~L~~~A~~Ir~ai~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vssw~r~ 380 (439)
T 4g22_A 304 FGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALD---YLELQPDLKALVRGAHTFKCPNLGITSWVRL 380 (439)
T ss_dssp CSCCEEEECCEEEHHHHHHSCHHHHHHHHHHHHHTCSHHHHHHHHH---HHHTCSCSTTCCCCHHHHCTTCEEEEECTTS
T ss_pred ccceeehhhcceEHHHHhhCcHHHHHHHHHHHHHhhCHHHHHHHHH---HHHhCccchhhcccCCcCcCCcEEEeecCcC
Confidence 9999999988888876 799999999999999999999998876 4433322 1111111111235999999999
Q ss_pred CCCCcccccCCccceeeecc-cccCcEEEEeecCCC-CcEEEEEecCHHHHHHhhc
Q 042238 376 PFYQAADFGWGKPIHVTFLN-FVSPNFFMLMATNDG-TGVEALVSLSPEDMVLFQR 429 (459)
Q Consensus 376 ~~~~~~DFG~G~P~~v~~~~-~~~~g~v~i~p~~~~-~g~ev~v~L~~~~m~~l~~ 429 (459)
++|+ +|||||+|+++++.. +. +|.++++|++++ ||++|.|+|++++|++|++
T Consensus 381 ~~y~-~DFGwGkP~~~~~~~~~~-~g~~~~~p~~~~~ggi~v~v~L~~~~m~~f~~ 434 (439)
T 4g22_A 381 PIHD-ADFGWGRPIFMGPGGIAY-EGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434 (439)
T ss_dssp CTTC-CCCSSCCCSEEEESSCCS-TTEEEEEECTTCSSCEEEEEEEEHHHHHHHHH
T ss_pred Cccc-cccCCCCcceeeccccCC-CcEEEEeecCCCCCcEEEEEECCHHHHHHHHH
Confidence 9999 999999999999876 55 799999998654 4799999999999999997
No 3
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=100.00 E-value=1.4e-69 Score=560.97 Aligned_cols=412 Identities=20% Similarity=0.279 Sum_probs=318.0
Q ss_pred CCCcceEEEEEeeEeeCCCCCCCCCccccCCccccccc-CccccEEEEecCCCCCCcccchhhhHHHHHHHHHHhcccCC
Q 042238 1 MGRALEVEIVAKEAIKPSYPTPHYLRNFKRSLMDQINY-PMYTTGIFIYKVNDDDDLSVKAGRISRRLKSSLSETLTKFY 79 (459)
Q Consensus 1 ~~~~~~v~v~~~~~V~p~~p~~~~~~~~~LS~lD~~~~-~~y~~~~~~f~~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p 79 (459)
|.+..+|+|.++++|+|+.|+++ .+.++||+||+... ..|++.+|||+.++..+ ...+..+++||+||+++|++||
T Consensus 1 ~~~~~~v~v~~~~~V~P~~~~~~-~~~~~LS~lD~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~Lk~sLs~~L~~~~ 77 (454)
T 2e1v_A 1 MASLPILTVLEQSQVSPPPDTLG-DKSLQLTFFDFFWLRSPPINNLFFYELPITRS--QFTETVVPNIKHSLSITLKHFY 77 (454)
T ss_dssp -----CEEEEEEEEECCCTTSCC-CEEEECCHHHHTTTTCCCEEEEEEEECCCCHH--HHHHTHHHHHHHHHHHHHTTCG
T ss_pred CCCCceEEEEEEEEEeCCCCCCC-CceecCchHHhhhhccCCccEEEEEeCCCCcc--hhhHHHHHHHHHHHHHHhhhcc
Confidence 45667899999999999987544 37899999999754 56999999999764310 0144679999999999999999
Q ss_pred CCCceec--C----CceeEeC-CCCeEEEEEEeccChhhhcCC-C-ChhhhcccCCCCCCCCC--CCCCCCeEEEEEEEE
Q 042238 80 PFAGKVK--D----DFSIECN-DDGVEFIEGRANGFLSQYLQE-P-DHNLLSEFHPFGKEGPV--AGKDSPLLIVQATFF 148 (459)
Q Consensus 80 ~LaGrv~--~----~~~i~~~-~~gv~f~~a~~~~~~~~l~~~-p-~~~~~~~l~p~~~~~~~--~~~~~Pll~vQvt~~ 148 (459)
+|||||+ + +++|+|+ ++||.|++|+++.+++++... + ....++.|+|..+.... +..+.|++.+|+|+|
T Consensus 78 plAGRl~~~~~~~g~~~i~c~~~~gv~fv~A~~~~~l~~l~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~pll~vQvT~f 157 (454)
T 2e1v_A 78 PFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLF 157 (454)
T ss_dssp GGGSEEEECSSSSSCCEEEECTTCCEEEEEEEECSCGGGTSSSSCEEGGGGGGGSCCCCCCEECSSCEEEECEEEEEEEE
T ss_pred ccceeeeeccCCCCCEEEEECCCCcEEEEEEEeCCCHHHhcCCCCCcchhhhcCCCCCCCcccccccccCceEEEEEEEe
Confidence 9999997 2 6899999 599999999999999998753 2 23356778886542110 112359999999999
Q ss_pred ecCcEEEEeeecccccchhHHHHHHHHHHHHhc-CCCCCCCCC-CCCCCCCccccccCCCCCCCC-C---CC---C----
Q 042238 149 KCGGVAIATCASHVLIDGMSLATFINCWAATAR-VDDHHQPSK-LPASMLPQYVTASLFPASEAV-S---SY---P---- 215 (459)
Q Consensus 149 ~cGG~iL~~~~~H~v~Dg~g~~~fl~~wa~~~r-g~~~~~~~~-~~~~~~P~~dr~~l~~~~~~~-p---~~---~---- 215 (459)
+|||++||+++||.++||.|+.+|+++||++|| |... .. .+....|.+|| .+..|. .. + .+ .
T Consensus 158 ~cgG~~lg~~~~H~v~Dg~~~~~Fl~awa~~~r~g~~~---~~~~~~~~~P~~dr-~l~~p~-~~~~~~~~~~~~~~~~~ 232 (454)
T 2e1v_A 158 PNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNND---ESFLANGTRPLYDR-IIKYPM-LDEAYLKRAKVESFNED 232 (454)
T ss_dssp TTTEEEEEEEECGGGCCHHHHHHHHHHHHHHHHTTSCC---HHHHHHSCCCBCCC-CCCCHH-HHHHHHHHTTCTTHHHH
T ss_pred cCCcEEEEEEeeeeecchhHHHHHHHHHHHHhccCCCc---cccCCCCCCCcccc-cCCCCC-cchHHHHhhhccccccc
Confidence 999999999999999999999999999999999 6520 00 11125688998 553221 10 0 00 0
Q ss_pred --CCC-CCCCCeeEEEEEEcHHHHHHHHHHHhcCCC--CCCChhHHHHHHHHHHHHhhccCCCCCCCCceEEEEEeeCCc
Q 042238 216 --LRF-SPSERVEFNRFVFDASKIAQLKAEAASEIV--PRPSTVEAITALIWKCTRTASRSNHGGSPRPSLLLQGANFRT 290 (459)
Q Consensus 216 --~~~-~~~~~~~~~~f~~s~~~l~~Lk~~~~~~~~--~~~St~D~l~A~lW~~~~~ar~~~~~~~~~~~~l~~~vd~R~ 290 (459)
+.. ....++..++|+|++++|++||+++.++.. .++|+||+|+||+|+|+++|| + ++.+.+.++||+|+
T Consensus 233 ~~~~~~~~~~~~~~~~f~f~~~~i~~LK~~a~~~~~~~~~~St~d~l~A~lWr~~~~Ar---~---~~~~~l~~~vd~R~ 306 (454)
T 2e1v_A 233 YVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSR---N---DKLQLFGFPIDRRA 306 (454)
T ss_dssp CCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCTTCSCCCHHHHHHHHHHHHHHHHH---C---CSEEEEEEEEECGG
T ss_pred cCcccCCCCCCceEEEEEECHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhc---C---CCceEEEEEecchh
Confidence 011 123567899999999999999999976542 689999999999999999999 3 46899999999999
Q ss_pred ccCCCCCCCCcccceeeeeeeecCCc----ccHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhhhccccCCCcce
Q 042238 291 ELVPPLPDNSVGNCVGYAVAQTGEKE----TKLQDLVCELRRAKEEFSRNGLQTLLENKCLLTIQDQSIRDKFESGEIDF 366 (459)
Q Consensus 291 rl~pplp~~Y~GN~~~~~~~~~~~~e----~~l~~~A~~iR~ai~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (459)
|++||+|++|+||++..+.+.++++| .+|+++|..||+++.+++++|++.++.. .+.++.+. .. .+ ... ..
T Consensus 307 rl~pplP~~Y~GN~~~~~~~~~~~~el~~~~~l~~~a~~Ir~ai~~~~~~~~~~~~~~-~~~~~~~~-~~-~~-~~~-~~ 381 (454)
T 2e1v_A 307 RMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKD-DMESFNDL-VS-EG-MPT-TM 381 (454)
T ss_dssp GSSSCCCTTBCSCCEEEEEEEEEGGGTSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC------CHH-HH-HC-CCS-EE
T ss_pred ccCCCCCcccccceeeeEEeecchhhccccccHHHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHH-HH-hh-cCC-ce
Confidence 99999999999999999988888874 6899999999999999986665554331 01223331 11 12 122 35
Q ss_pred EEEecccCCCCCCcccccCCccceeeecc-cccCcEEEEeecCCCC-cEEEEEecCHHHHHHhhcCHHHHh
Q 042238 367 FSFTSVVRFPFYQAADFGWGKPIHVTFLN-FVSPNFFMLMATNDGT-GVEALVSLSPEDMVLFQRNQELLA 435 (459)
Q Consensus 367 ~~~ssw~~~~~~~~~DFG~G~P~~v~~~~-~~~~g~v~i~p~~~~~-g~ev~v~L~~~~m~~l~~D~~~~~ 435 (459)
+.+|||+++++|+ +|||||+|.++++.. +. +|.++++|+++++ |++|.|+|++++|++|++ +|.+
T Consensus 382 ~~vssw~~~~~y~-~DFG~G~P~~v~~~~~~~-~g~~~l~p~~~~~ggi~v~v~L~~~~m~~f~~--~~~~ 448 (454)
T 2e1v_A 382 TWVSGTPKLRFYD-MDFGWGKPKKLETVSIDH-NGAISINSCKESNEDLEIGVCISATQMEDFVH--IFDD 448 (454)
T ss_dssp EEEECCTTSCGGG-CCSSSCSCSEEEEGGGGG-SSEEEEEECSSCTTSEEEEEEEEHHHHHHHHH--HHHH
T ss_pred EEEecCCCCCccc-ccccCccceEEEeeeeCC-CCeEEEEecCCCCCCEEEEEEECHHHHHHHHH--HHHH
Confidence 9999999999999 999999999999877 54 7899999977654 799999999999999975 7765
No 4
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=100.00 E-value=1.7e-69 Score=560.40 Aligned_cols=408 Identities=20% Similarity=0.260 Sum_probs=320.7
Q ss_pred EEEEEeeEeeCCCCCCCCCccccCCccccccc-CccccEEEEecCCCCCCcccchhhhHHHHHHHHHHhcccCCCCCcee
Q 042238 7 VEIVAKEAIKPSYPTPHYLRNFKRSLMDQINY-PMYTTGIFIYKVNDDDDLSVKAGRISRRLKSSLSETLTKFYPFAGKV 85 (459)
Q Consensus 7 v~v~~~~~V~p~~p~~~~~~~~~LS~lD~~~~-~~y~~~~~~f~~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrv 85 (459)
|+|.++++|+|+.|+++ .+.++||+||+... ..|++.+|||+.++..+ ...+..+++||+||+++|++||+|||||
T Consensus 2 v~v~~~~~V~P~~~~~~-~~~~~LS~lD~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~Lk~sLs~~L~~~~plAGRl 78 (453)
T 2xr7_A 2 ASVIEQCQVVPSPGSAT-ELTLPLTYFDHVWLAFHRMRRILFYKLPISRP--DFVQTIIPTLKDSLSLTLKYYLPLAGNV 78 (453)
T ss_dssp CEEEEESCCCCCTTCCS-EEEEECCHHHHGGGGSCCEEEEEEEECCCCSH--HHHHTHHHHHHHHHHHHHTTSGGGGSCC
T ss_pred eEEEEEEEecCCCCCCC-CceECCCHHHhhhhhcCCccEEEEEeCCCCCc--hhHHHHHHHHHHHHHHHhhhccccCeeE
Confidence 89999999999987544 37899999999754 56999999999764310 0145679999999999999999999999
Q ss_pred c------CCceeEeC-CCCeEEEEEEeccChhhhcCC--CChhhhcccCCCCCCCCC--CCCCCCeEEEEEEEEecCcEE
Q 042238 86 K------DDFSIECN-DDGVEFIEGRANGFLSQYLQE--PDHNLLSEFHPFGKEGPV--AGKDSPLLIVQATFFKCGGVA 154 (459)
Q Consensus 86 ~------~~~~i~~~-~~gv~f~~a~~~~~~~~l~~~--p~~~~~~~l~p~~~~~~~--~~~~~Pll~vQvt~~~cGG~i 154 (459)
+ ++++|+|+ ++||.|++|+++.+++++... +....+..|+|..+.... ...+.|++.+|+|+|+|||++
T Consensus 79 ~~~~~~~g~~~i~c~~~~gv~fv~A~~~~~l~~l~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~pll~vQvT~f~cGG~~ 158 (453)
T 2xr7_A 79 ACPQDWSGYPELRYVTGNSVSVIFSESDMDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGIS 158 (453)
T ss_dssp EEESSTTCCCEEEEETTCCCEEEEEECCSCHHHHTCSSCCCGGGGGGGSCCCCCCEEETTEEECCCEEEEEEEETTTEEE
T ss_pred EccCCCCCCEEEEecCCCceEEEEEecCCCHHHhhccCCCChhhhhcCCCCCCCcccccccccCCeEEEEEEEccCCcEE
Confidence 5 37899999 599999999999999998752 233456778886542110 011289999999999999999
Q ss_pred EEeeecccccchhHHHHHHHHHHHHhc-CCCCCCCCCCCCCCCCccccccCCCCCCCC----CCC---CCC-C----CCC
Q 042238 155 IATCASHVLIDGMSLATFINCWAATAR-VDDHHQPSKLPASMLPQYVTASLFPASEAV----SSY---PLR-F----SPS 221 (459)
Q Consensus 155 L~~~~~H~v~Dg~g~~~fl~~wa~~~r-g~~~~~~~~~~~~~~P~~dr~~l~~~~~~~----p~~---~~~-~----~~~ 221 (459)
||+++||.++||.|+.+|+++||++|| |... ...+....|++||+.+.+|.+.. ..+ +.. . ...
T Consensus 159 lg~~~~H~v~Dg~~~~~Fl~~wa~~~r~G~~~---~~~~~~~~P~~dr~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (453)
T 2xr7_A 159 IGFTNHHVAGDGATIVKFVRAWALLNKFGGDE---QFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTP 235 (453)
T ss_dssp EEEEECTTTCCSHHHHHHHHHHHHHHHTTTCG---GGSCGGGSCBCCCSSSCCSSCHHHHTTTTGGGCTTTSCCSCCCCC
T ss_pred EEEeeeeeeechhHHHHHHHHHHHHhhcCCCc---ccCCCCCCCccccccccCCCCcchHHHHhccccCCccccccccCC
Confidence 999999999999999999999999999 7520 00111256899998776543220 000 100 0 123
Q ss_pred CCeeEEEEEEcHHHHHHHHHHHhcCCC--CCCChhHHHHHHHHHHHHhhccCCC-C-CCCCceEEEEEeeCCcccCCCCC
Q 042238 222 ERVEFNRFVFDASKIAQLKAEAASEIV--PRPSTVEAITALIWKCTRTASRSNH-G-GSPRPSLLLQGANFRTELVPPLP 297 (459)
Q Consensus 222 ~~~~~~~f~~s~~~l~~Lk~~~~~~~~--~~~St~D~l~A~lW~~~~~ar~~~~-~-~~~~~~~l~~~vd~R~rl~pplp 297 (459)
.++..++|+|++++|++||+++.++.. .++|+||+|+||+|+|+++||.... . ++++.+.+.++||+|+|++||+|
T Consensus 236 ~~~~~~~f~f~~~~i~~Lk~~a~~~~~~~~~~St~~~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplP 315 (453)
T 2xr7_A 236 PDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLP 315 (453)
T ss_dssp CSCCCEEEEECHHHHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEECCTTSCSSSCCC
T ss_pred CCceEEEEEECHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhccccccCCCCcceEEEEEecccccCCCCCC
Confidence 567789999999999999999976542 6899999999999999999997520 0 12468999999999999999999
Q ss_pred CCCcccceeeeeeeecCCc----ccHHHHHHHHHHHHHH--Hhhh-hhhhhhhhhhHHHHhhhhhhccccCCCcceEEEe
Q 042238 298 DNSVGNCVGYAVAQTGEKE----TKLQDLVCELRRAKEE--FSRN-GLQTLLENKCLLTIQDQSIRDKFESGEIDFFSFT 370 (459)
Q Consensus 298 ~~Y~GN~~~~~~~~~~~~e----~~l~~~A~~iR~ai~~--~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 370 (459)
++|+||++..+.+.++++| .+|+++|..||+++.+ ++++ |+++ + | ++. .. .+. .. ..+.+|
T Consensus 316 ~~Y~GN~~~~~~~~~~~~el~~~~~l~~~a~~Ir~ai~~~~~~~e~~~~~--~---~---~~~-~~-~~~-~~-~~~~vs 383 (453)
T 2xr7_A 316 PSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSG--S---W---FKE-YD-KVD-AK-RSLSVA 383 (453)
T ss_dssp TTBCSCCCCEEEEEEEHHHHTSSSHHHHHHHHHHHHHTTSSSCHHHHHSS--C---T---TSC-CC-CSC-GG-GEEEEC
T ss_pred cccccceeeeeeeeeeHHHhcCcchHHHHHHHHHHHHHhhccCCccchhh--H---H---HHH-HH-hhc-cC-CcEEEe
Confidence 9999999999988887763 6899999999999999 5677 8876 3 2 221 11 121 12 359999
Q ss_pred cccCCCCCCcccccCCccceeeecc-cccCc--EEEEeecCCCC-cEEEEEecCHHHHHHhhcCHHHHhh
Q 042238 371 SVVRFPFYQAADFGWGKPIHVTFLN-FVSPN--FFMLMATNDGT-GVEALVSLSPEDMVLFQRNQELLAF 436 (459)
Q Consensus 371 sw~~~~~~~~~DFG~G~P~~v~~~~-~~~~g--~v~i~p~~~~~-g~ev~v~L~~~~m~~l~~D~~~~~~ 436 (459)
||+++++|+ +|||||+|.++++.. +. +| .++++|+++++ |++|.|+|++++|++|++ +|.+.
T Consensus 384 sw~~~~~y~-~DFG~G~P~~v~~~~~~~-~g~~~~~l~~~~~~~ggi~v~v~L~~~~m~~f~~--~~~~~ 449 (453)
T 2xr7_A 384 GSPKLDLYA-ADFGWGRPEKLEFVSIDN-DDGISMSLSKSKDSDGDLEIGLSLSKTRMNAFAA--MFTHG 449 (453)
T ss_dssp SCSSCCGGG-CCCSSCSCSEEEEGGGSS-CSSCEEEEEECSSSTTCEEEEECCCHHHHHHHHH--HHHHH
T ss_pred ccccCCccc-cccCCCcceEEEeeeecC-CCceEEEEeecCCCCCCEEEEEEeCHHHHHHHHH--HHHHH
Confidence 999999999 999999999999876 54 68 88888877654 799999999999999975 77654
No 5
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=100.00 E-value=7.6e-63 Score=510.40 Aligned_cols=395 Identities=17% Similarity=0.190 Sum_probs=299.0
Q ss_pred ccCCcccccc--cCccccEEEEecCCCCCCcccchhhhHHHHHHHHHHhcccCCCCCceec---------CCceeEeCCC
Q 042238 28 FKRSLMDQIN--YPMYTTGIFIYKVNDDDDLSVKAGRISRRLKSSLSETLTKFYPFAGKVK---------DDFSIECNDD 96 (459)
Q Consensus 28 ~~LS~lD~~~--~~~y~~~~~~f~~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrv~---------~~~~i~~~~~ 96 (459)
++||.|||+. ++.|++.+|||+.++.. +....+++||+||+++|++||+|||||+ ++++|.|++.
T Consensus 5 ~~Ls~lD~~~~~~~~y~~~~~~y~~~~~~----~~~~~~~~Lk~sLs~~L~~~~plAGRl~~~~~~~~~~g~~~i~~~~~ 80 (451)
T 2rkv_A 5 IQLDTLGQLPGLLSIYTQISLLYPVSDSS----QYPTIVSTFEQGLKRFSEAVPWVAGQVKAEGISEGNTGTSFIVPFED 80 (451)
T ss_dssp EECCGGGGCTTGGGCEEEEEEEEECSCGG----GHHHHHHHHHHHHHHHHHHSGGGGCEEEEESCBTTBCCEEEEECCCS
T ss_pred ccCChhhcCccccccceeEEEEEECCCCC----CHHHHHHHHHHHHHHHHHhCCceeEEEEECCCCCCCCCcEEEeecCC
Confidence 6999999987 68999999999964321 3456899999999999999999999986 2478888777
Q ss_pred CeEEEEEEecc-----ChhhhcC--CCChhhh--cccCCCCCCC----CCCCCCCCeEEEEEEEEecCcEEEEeeecccc
Q 042238 97 GVEFIEGRANG-----FLSQYLQ--EPDHNLL--SEFHPFGKEG----PVAGKDSPLLIVQATFFKCGGVAIATCASHVL 163 (459)
Q Consensus 97 gv~f~~a~~~~-----~~~~l~~--~p~~~~~--~~l~p~~~~~----~~~~~~~Pll~vQvt~~~cGG~iL~~~~~H~v 163 (459)
+..|++++++. +++++.. .|. ..+ ..|.|..... .....+.|++.+|+|+| |||++||+++||.+
T Consensus 81 ~~~~~va~~~~d~~~p~~~~l~~~~~p~-~~~~~~~~~p~~~~p~~~~~~~~~~~pll~vQvT~~-~GG~~lg~~~~H~v 158 (451)
T 2rkv_A 81 VPRVVVKDLRDDPSAPTIEGMRKAGYPM-AMFDENIIAPRKTLPIGPGTGPDDPKPVILLQLNFI-KGGLILTVNGQHGA 158 (451)
T ss_dssp SCEEEEEECTTCTTSCBHHHHHHHTSCG-GGSBHHHHCSSCSSSCSTTCSTTSCCBSEEEEEEEE-BTEEEEEEEEETTT
T ss_pred CCeEEEEeCCCCCCCCCHHHHHHcCCCh-hhcCHhhcCCcccCCCCcccCCCCCCceEEEEEEEe-cCceeeeeeehhcc
Confidence 77788888764 5666653 232 111 1243432110 01223489999999965 79999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCccccccCCCCC--C-----C-CCCCCC------CCCCCCCeeEEEE
Q 042238 164 IDGMSLATFINCWAATARVDDHHQPSKLPASMLPQYVTASLFPAS--E-----A-VSSYPL------RFSPSERVEFNRF 229 (459)
Q Consensus 164 ~Dg~g~~~fl~~wa~~~rg~~~~~~~~~~~~~~P~~dr~~l~~~~--~-----~-~p~~~~------~~~~~~~~~~~~f 229 (459)
+||.|+.+|+++||++|||.. .+......|.+||+.+.+.. . . ++.+.. .+....++..++|
T Consensus 159 ~Dg~g~~~Fl~awa~~~rg~~----~~~~~~~~p~~dr~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 234 (451)
T 2rkv_A 159 MDMVGQDAVIRLLSKACRNDP----FTEEEMTAMNLDRKTIVPYLENYTIGPEVDHQIVKADVAGGDAVLTPVSASWAFF 234 (451)
T ss_dssp CCHHHHHHHHHHHHHHHHTCC----CCHHHHHHTTCCSTTSSCCCTTCCCCGGGTTCBCCTTSCC-------CCEEEEEE
T ss_pred ccHHHHHHHHHHHHHHhcCCC----CCccccccccCchhhccccccccCCCccccccccCCCCCCCCCCCCCCCceEEEE
Confidence 999999999999999999864 11000024677776443321 0 1 011111 1122356889999
Q ss_pred EEcHHHHHHHHHHHhcCC---CCCCChhHHHHHHHHHHHHhhccCCCCCCCCceEEEEEeeCCcccCCCCCCCCccccee
Q 042238 230 VFDASKIAQLKAEAASEI---VPRPSTVEAITALIWKCTRTASRSNHGGSPRPSLLLQGANFRTELVPPLPDNSVGNCVG 306 (459)
Q Consensus 230 ~~s~~~l~~Lk~~~~~~~---~~~~St~D~l~A~lW~~~~~ar~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~ 306 (459)
+|++++|++||+++.++. +.++|+||+|+||+|+|+++||.... ++++++.+.++||+|+|++ +|++|+||++.
T Consensus 235 ~f~~~~i~~LK~~a~~~~~~~~~~~St~d~l~A~~Wr~~~~Ar~~~~-~~~~~~~l~~~vd~R~rl~--lP~~y~GN~~~ 311 (451)
T 2rkv_A 235 TFSPKAMSELKDAATKTLDASTKFVSTDDALSAFIWKSASRVRLERI-DGSAPTEFCRAVDARPAMG--VSNNYPGLLQN 311 (451)
T ss_dssp EECHHHHHHHHHHHHTTCCTTCSCCCHHHHHHHHHHHHHHHHHTTTS-CTTSEEEEEEEEECHHHHT--CCTTCCSCCEE
T ss_pred EECHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHhccC-CCCCceEEEEEecccccCC--CCCCCccccee
Confidence 999999999999998654 36799999999999999999983112 3357899999999999998 88999999999
Q ss_pred eeeeeecCCc---ccHHHHHHHHHHHHHHHhhhh-hhhhhhhhhHHHHhhhhhhcccc---CCCcceEEEecccCCCCCC
Q 042238 307 YAVAQTGEKE---TKLQDLVCELRRAKEEFSRNG-LQTLLENKCLLTIQDQSIRDKFE---SGEIDFFSFTSVVRFPFYQ 379 (459)
Q Consensus 307 ~~~~~~~~~e---~~l~~~A~~iR~ai~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ssw~~~~~~~ 379 (459)
.+.+.++++| .+|+++|..||+++.+++++| +++.++ |++...+.-...+. ..+. .+++|||+++++|+
T Consensus 312 ~~~~~~~~~el~~~~L~~~a~~ir~ai~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~ssw~~~~~y~ 387 (451)
T 2rkv_A 312 MTYHNSTIGEIANESLGATASRLRSELDPASMRQRTRGLAT---YLHNNPDKSNVSLTADADPST-SVMLSSWAKVGLWD 387 (451)
T ss_dssp EEEEEEEHHHHHHSCHHHHHHHHHTTCCHHHHHHHHHHHHH---HHHHCSCCTTBCTTTTCCTTT-CEEEEECTTCCGGG
T ss_pred eecccCcHHHhccchHHHHHHHHHHHhcccCchhHHHHHHH---HHhcCCCccccccccccCCCC-CEEEeccccCCccc
Confidence 9988888776 799999999999999999888 888765 44332211000111 1233 49999999999999
Q ss_pred ccccc--CCccceeeecc-cccCcEEEEeecCCCCcEEEEEecCHHHHHHhhcCHHHHhhhcCC
Q 042238 380 AADFG--WGKPIHVTFLN-FVSPNFFMLMATNDGTGVEALVSLSPEDMVLFQRNQELLAFTTLN 440 (459)
Q Consensus 380 ~~DFG--~G~P~~v~~~~-~~~~g~v~i~p~~~~~g~ev~v~L~~~~m~~l~~D~~~~~~~~~~ 440 (459)
+||| ||+|.+++.+. ...+|+++++|++.+||++|.|+|++++|++|++|+||++|++++
T Consensus 388 -~DFG~gwG~P~~v~~~~~~~~~g~~~~~p~~~~ggi~v~v~L~~~~m~~f~~d~ef~~~~~~~ 450 (451)
T 2rkv_A 388 -YDFGLGLGKPETVRRPIFEPVESLMYFMPKKPDGEFCAALSLRDEDMDRLKADKEWTKYAQYV 450 (451)
T ss_dssp -CCTTCSSCSCSEEECCBCSCCTTEEEECCCCTTSCEEEEEEEEHHHHHHHHHCHHHHTTCEEC
T ss_pred -cccCCCCCCceEEEcCCccCCCCEEEEecCCCCCCEEEEEEeCHHHHHHHhcCHHHHhhheec
Confidence 9998 89999998654 323789999987666689999999999999999999999999875
No 6
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=98.97 E-value=1.1e-07 Score=95.86 Aligned_cols=273 Identities=14% Similarity=0.097 Sum_probs=157.9
Q ss_pred ccccCCccccccc--CccccEEEEecCCCCCCcccchhhhHHHHHHHHHHhcccCCCCCceecC---C-ceeEeCCCCeE
Q 042238 26 RNFKRSLMDQINY--PMYTTGIFIYKVNDDDDLSVKAGRISRRLKSSLSETLTKFYPFAGKVKD---D-FSIECNDDGVE 99 (459)
Q Consensus 26 ~~~~LS~lD~~~~--~~y~~~~~~f~~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrv~~---~-~~i~~~~~gv~ 99 (459)
..+|||++.+.+. ..++...+-++.+. ..++|+++|.+++..+|.|-.++.. + .++........
T Consensus 6 ~~~pls~~Q~~~~~~~y~~~~~~~l~g~l----------d~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~q~v~~~~~~~ 75 (422)
T 1q9j_A 6 VIRKLSHSEEVFAQYEVFTSMTIQLRGVI----------DVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHS 75 (422)
T ss_dssp EEEECCHHHHHHHHTTCEEEEEEEEESCC----------CHHHHHHHHHHHHHHCGGGSEEEEECTTSSEEEEECCSSSC
T ss_pred eeecCCHHHHHHHhcCceEEEEEEEecCC----------CHHHHHHHHHHHHHhCccceEEEEecCCcceeeeccCCCCC
Confidence 4689999887443 23344444444332 3799999999999999999988851 1 11111111111
Q ss_pred EEEEEeccChhhhcCCCChhhhcccCCCCCCCCCCCCCCCeEEEEEEEEecCcEEEEeeecccccchhHHHHHHHHHHHH
Q 042238 100 FIEGRANGFLSQYLQEPDHNLLSEFHPFGKEGPVAGKDSPLLIVQATFFKCGGVAIATCASHVLIDGMSLATFINCWAAT 179 (459)
Q Consensus 100 f~~a~~~~~~~~l~~~p~~~~~~~l~p~~~~~~~~~~~~Pll~vQvt~~~cGG~iL~~~~~H~v~Dg~g~~~fl~~wa~~ 179 (459)
.....++........... -..+ .+ ...|++++.+.. ..++..|.+.+||.++||.|+..|++.|.+.
T Consensus 76 ------~~~~~d~~~~~~~~~~~~--~~~~---~d-~~~pl~r~~l~~-~~~~~~l~l~~hH~i~Dg~S~~~l~~~l~~~ 142 (422)
T 1q9j_A 76 ------GICVIDGTAATNGSPSGN--AELR---LD-QSVSLLHLQLIL-REGGAELTLYLHHCMADGHHGAVLVDELFSR 142 (422)
T ss_dssp ------CCEEEC--------------CCCC---CC-TTTCSEEEEEEC-CSSSCEEEEEEEGGGCCHHHHHHHHHHHHHH
T ss_pred ------ceEEEECCCCCcchhhhc--ccCc---cC-CCCCcEEEEEEe-cCCCeEEEEEeceEEEchhhHHHHHHHHHHH
Confidence 001111111110000100 0011 22 458888888877 6678999999999999999999999999999
Q ss_pred hcC----CCCCCCCCCCCCCCCccc--------cccCC-------C-CCCC-----C--CCCCC--CCCCCCCeeEEEEE
Q 042238 180 ARV----DDHHQPSKLPASMLPQYV--------TASLF-------P-ASEA-----V--SSYPL--RFSPSERVEFNRFV 230 (459)
Q Consensus 180 ~rg----~~~~~~~~~~~~~~P~~d--------r~~l~-------~-~~~~-----~--p~~~~--~~~~~~~~~~~~f~ 230 (459)
+++ ... ...+ ..++-+ +.... . ..++ + ..+|. +...........+.
T Consensus 143 Y~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~lp~~~~~~~~~~~~~~~~~ 217 (422)
T 1q9j_A 143 YTDAVTTGDP---GPIT--PQPTPLSMEAVLAQRGIRKQGLSGAERFMSVMYAYEIPATETPAVLAHPGLPQAVPVTRLW 217 (422)
T ss_dssp HHHHHHSSSC---CCCC--CCCCCBCHHHHHHHSSCCC-----CTTSSTTTTCC-------------CCSBCCCCEEEEC
T ss_pred HHHhhccCCC---CCCC--CCCCCCCHHHHHHhcCCcccccchhhhhhhhhhcccCCCcccCCCCCCCCCCCCccceEEE
Confidence 873 221 1111 112111 10000 0 0010 0 01110 11111223567889
Q ss_pred EcHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhhccCCCCCCCCceEEEEEeeCCcccCCCCCCCCcccceeeeee
Q 042238 231 FDASKIAQLKAEAASEIVPRPSTVEAITALIWKCTRTASRSNHGGSPRPSLLLQGANFRTELVPPLPDNSVGNCVGYAVA 310 (459)
Q Consensus 231 ~s~~~l~~Lk~~~~~~~~~~~St~D~l~A~lW~~~~~ar~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~ 310 (459)
++.+..++|++.|.. ..+|.++++.|.+-..+.+-+.. + .....++.++++|....||++..=..|.+++...
T Consensus 218 l~~~~~~~l~~~a~~---~~~t~~~~l~aa~~~~l~r~~~~---~-~~~v~~g~~~~~R~~~~~~~~~~~~~~~vG~f~n 290 (422)
T 1q9j_A 218 LSKQQTSDLMAFGRE---HRLSLNAVVAAAILLTEWQLRNT---P-HVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASY 290 (422)
T ss_dssp CCHHHHHHHHHHHTT---TTCCHHHHHHHHHHHHHHHHHTC---S-SCCEEEEEEEETTTTSSSCCCTTTBSCCEEEEEE
T ss_pred eCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhcccC---C-CceEEEeeeeecccccCCCCChhhhhhhheeeee
Confidence 999999999999975 45899999998876666654222 1 3568899999999987665542234555555444
Q ss_pred eecCC-cccHHHHHHHHHHHHHHH
Q 042238 311 QTGEK-ETKLQDLVCELRRAKEEF 333 (459)
Q Consensus 311 ~~~~~-e~~l~~~A~~iR~ai~~~ 333 (459)
.++.. +.++.+++..+++.+.+.
T Consensus 291 ~lp~~~~~~~~~~l~~v~~~~~~~ 314 (422)
T 1q9j_A 291 LAEIGPNTDIVDLASDIVATLRAD 314 (422)
T ss_dssp EECCCSSCCHHHHHHHHHHHHHHH
T ss_pred eeeccCCCCHHHHHHHHHHHHHHH
Confidence 44554 357778888888877653
No 7
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.52 E-value=3.5e-05 Score=79.89 Aligned_cols=268 Identities=10% Similarity=0.016 Sum_probs=160.2
Q ss_pred ccccCCccccc-------cc--Ccc-ccEEEEecCCCCCCcccchhhhHHHHHHHHHHhcccCCCCCceecC---Cc-ee
Q 042238 26 RNFKRSLMDQI-------NY--PMY-TTGIFIYKVNDDDDLSVKAGRISRRLKSSLSETLTKFYPFAGKVKD---DF-SI 91 (459)
Q Consensus 26 ~~~~LS~lD~~-------~~--~~y-~~~~~~f~~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrv~~---~~-~i 91 (459)
..+|||+.-+- .+ ..| +...+-++... ..++|++++.+++..+|.|--++.. .. .+
T Consensus 95 ~~~pls~~Q~~~~~~~~~~~~~~~y~~~~~~~l~g~l----------d~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~q~ 164 (520)
T 2jgp_A 95 AYYPVSSAQKRMYILDQFEGVGISYNMPSTMLIEGKL----------ERTRVEAAFQRLIARHESLRTSFAVVNGEPVQN 164 (520)
T ss_dssp SSEECCHHHHHHHHHHHHTCCTTTTBCCEEEEEEECC----------CHHHHHHHHHHHHHHCGGGGEEEEEETTEEEEE
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCcccceEEEEECCCC----------CHHHHHHHHHHHHHHhHhheeEEEeeCCEEEEE
Confidence 56899976431 12 123 45555555433 4899999999999999999888751 11 11
Q ss_pred EeCCCCeEEEEEEeccChhhhcCCCChhhhcccCCCCCCCCCCCCCCCeEEEEEEEEecCcEEEEeeecccccchhHHHH
Q 042238 92 ECNDDGVEFIEGRANGFLSQYLQEPDHNLLSEFHPFGKEGPVAGKDSPLLIVQATFFKCGGVAIATCASHVLIDGMSLAT 171 (459)
Q Consensus 92 ~~~~~gv~f~~a~~~~~~~~l~~~p~~~~~~~l~p~~~~~~~~~~~~Pll~vQvt~~~cGG~iL~~~~~H~v~Dg~g~~~ 171 (459)
........+.. .+.+-+++. + .....- .+ .+....|++++.+-....+...|.+.+||.++||.|+..
T Consensus 165 v~~~~~~~~~~--~~~~~~~~~-----~-~~~~~~-~~---fdl~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~ 232 (520)
T 2jgp_A 165 IHEDVPFALAY--SEVTEEEAR-----E-LVSSLV-QP---FDLEVAPLIRVSLLKIGEDRYVLFTDMHHSISDGVSSGI 232 (520)
T ss_dssp ECSCCCCCCEE--EECCHHHHH-----H-HHHHTC-CC---CCTTSSCCEEEEEEEEETTEEEEEEEEBGGGCCHHHHHH
T ss_pred ECCCCCCceEE--EeCCHHHHH-----H-HHHHhc-CC---CCCCCCcceeEEEEEEcCCcEEEEEEccceeecHhHHHH
Confidence 11111111111 111111110 0 111111 11 122347888888777665678999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCccc-----cccCCCC-------------CCCCC--CCCC----CCCCCCCeeEE
Q 042238 172 FINCWAATARVDDHHQPSKLPASMLPQYV-----TASLFPA-------------SEAVS--SYPL----RFSPSERVEFN 227 (459)
Q Consensus 172 fl~~wa~~~rg~~~~~~~~~~~~~~P~~d-----r~~l~~~-------------~~~~p--~~~~----~~~~~~~~~~~ 227 (459)
|++.+.+.+++... .+. ..++-| +.....+ .+.++ .+|. +..........
T Consensus 233 l~~el~~~Y~~~~l---~~~---~~~~~d~~~~~~~~~~~~~~~~~~~yW~~~l~~~~~~~~lp~~~~~~~~~~~~~~~~ 306 (520)
T 2jgp_A 233 LLAEWVQLYQGDVL---PEL---RIQYKDFAVWQQEFSQSAAFHKQEAYWLQTFADDIPVLNLPTDFTRPSTQSFAGDQC 306 (520)
T ss_dssp HHHHHHHHHTTCCC---CCC---SCCHHHHHHHHHHHTTSHHHHHHHHHHHHHTSSCCCCCCCCCSSCCCSSCCCBEEEE
T ss_pred HHHHHHHHHccCCC---CCC---CCCHHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCCcCCCCCCCCCCCCCCCCccEE
Confidence 99999999988641 111 112111 1000000 01101 1221 11122344567
Q ss_pred EEEEcHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhhccCCCCCCCCceEEEEEeeCCcccCCCCCCCCcccceee
Q 042238 228 RFVFDASKIAQLKAEAASEIVPRPSTVEAITALIWKCTRTASRSNHGGSPRPSLLLQGANFRTELVPPLPDNSVGNCVGY 307 (459)
Q Consensus 228 ~f~~s~~~l~~Lk~~~~~~~~~~~St~D~l~A~lW~~~~~ar~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~ 307 (459)
.+.++.+..++|++.|... .+|.+.++.|.+-..+.+-.. .+...++.++++|..- --.+.+|+.+..
T Consensus 307 ~~~l~~~~~~~l~~~a~~~---~~T~~~~l~aa~a~~L~~~~~------~~dv~~g~~~~gR~~~---~~~~~vG~f~n~ 374 (520)
T 2jgp_A 307 TIGAGKALTEGLHQLAQAT---GTTLYMVLLAAYNVLLAKYAG------QEDIIVGTPITGRSHA---DLEPIVGMFVNT 374 (520)
T ss_dssp EEECCHHHHHHHHHHHHHH---TCCHHHHHHHHHHHHHHHHHT------CSCEEEEEEECCCCSG---GGTTCCSCCCEE
T ss_pred EEeCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhcC------CCCeEEEeccCCCCch---hhhccEEeeeee
Confidence 8899999999999988753 488999998876555554432 2568899999999752 235677888777
Q ss_pred eeeeecCCc-ccHHHHHHHHHHHHHHH
Q 042238 308 AVAQTGEKE-TKLQDLVCELRRAKEEF 333 (459)
Q Consensus 308 ~~~~~~~~e-~~l~~~A~~iR~ai~~~ 333 (459)
....+.... .++.++...+++.+.+.
T Consensus 375 lplr~~~~~~~~~~~~l~~v~~~~~~~ 401 (520)
T 2jgp_A 375 LAMRNKPQREKTFSEFLQEVKQNALDA 401 (520)
T ss_dssp EEEEECCCTTSBHHHHHHHHHHHHHHH
T ss_pred eeEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 666666553 68888888888877654
No 8
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=98.42 E-value=7.5e-05 Score=76.03 Aligned_cols=281 Identities=12% Similarity=0.044 Sum_probs=158.6
Q ss_pred ccccCCcccc-----ccc-CccccEEEEecCCCCCCcccchhhhHHHHHHHHHHhcccCCCCCceecC---Cc-eeEeC-
Q 042238 26 RNFKRSLMDQ-----INY-PMYTTGIFIYKVNDDDDLSVKAGRISRRLKSSLSETLTKFYPFAGKVKD---DF-SIECN- 94 (459)
Q Consensus 26 ~~~~LS~lD~-----~~~-~~y~~~~~~f~~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrv~~---~~-~i~~~- 94 (459)
..+|||+..+ ..+ .......+.|..... ...+.|+++|.+++..++.|--++.. .. .+...
T Consensus 16 ~~~pls~~Q~~~~~~~~~~~~~y~~~~~~~l~g~--------ld~~~L~~Al~~lv~rh~~LRt~f~~~~~~~~q~v~~~ 87 (466)
T 2xhg_A 16 GNVPLTPIQKWFFGKNFTNTGHWNQSSVLYRPEG--------FDPKVIQSVMDKIIEHHDALRMVYQHENGNVVQHNRGL 87 (466)
T ss_dssp EECCCCHHHHHHHHTTCTTTTCBEEEEEEEETTC--------CCHHHHHHHHHHHHHHSGGGGEEEECGGGCCEEEECCS
T ss_pred CCCCCCHHHHHHHhCCCCCcCcceeEEEEEcCCC--------CCHHHHHHHHHHHHHhChHhheEEecCCCceeeecccc
Confidence 5689997654 222 112223344444443 34899999999999999999888862 11 11111
Q ss_pred -CCCeEEEEEEeccChhhhcCCCCh-hhhcccC--CCCCCCCCCCCCCCeEEEEEEEEecCcEEEEeeecccccchhHHH
Q 042238 95 -DDGVEFIEGRANGFLSQYLQEPDH-NLLSEFH--PFGKEGPVAGKDSPLLIVQATFFKCGGVAIATCASHVLIDGMSLA 170 (459)
Q Consensus 95 -~~gv~f~~a~~~~~~~~l~~~p~~-~~~~~l~--p~~~~~~~~~~~~Pll~vQvt~~~cGG~iL~~~~~H~v~Dg~g~~ 170 (459)
...+.+.+.. +....+. .....+. -..+ .+....|++++.+-... ++-.|-+.+||.++||.|+.
T Consensus 88 ~~~~~~~~~~d-------~~~~~~~~~~~~~~~~~~~~~---fdl~~~pl~r~~l~~~~-~~~~l~l~~HH~i~Dg~S~~ 156 (466)
T 2xhg_A 88 GGQLYDFFSYN-------LTAQPDVQQAIEAETQRLHSS---MNLQEGPLVKVALFQTL-HGDHLFLAIHHLVVDGISWR 156 (466)
T ss_dssp SSCCCEEEEEE-------CTTCSCHHHHHHHHHHHHHTT---CCTTTCCCEEEEEEEET-TEEEEEEEEEGGGCCHHHHH
T ss_pred ccccceeEEEe-------cCCcccHHHHHHHHHHHHHhc---cCCCCCCeEEEEEEEcC-CCCEEEEEeeeeeechhhHH
Confidence 1122222211 1111110 0010000 0011 12234688888887766 45557799999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCccc-----cccCCC-----CC--------CC-CCCCCCC----CCCCCCeeEE
Q 042238 171 TFINCWAATARVDDHHQPSKLPASMLPQYV-----TASLFP-----AS--------EA-VSSYPLR----FSPSERVEFN 227 (459)
Q Consensus 171 ~fl~~wa~~~rg~~~~~~~~~~~~~~P~~d-----r~~l~~-----~~--------~~-~p~~~~~----~~~~~~~~~~ 227 (459)
.|++.+.+.+++.........++...++.+ +..+.. .. +. .+.+|.. ..........
T Consensus 157 ~l~~el~~~Y~~~~~g~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~~~lp~~~~~~~~~~~~~~~~ 236 (466)
T 2xhg_A 157 ILFEDLATGYAQALAGQAISLPEKTDSFQSWSQWLQEYANEADLLSEIPYWESLESQAKNVSLPKDYEVTDCKQKSVRNM 236 (466)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCCCSCHHHHHHHHHHHTTSHHHHTTHHHHHHHHHHCCCCCCCCSSCCSSCBGGGEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCccchhhhHHHHHhhccCCcccCCccccccccccccceEE
Confidence 999999998864210000111100111111 000000 00 00 0122211 1112334567
Q ss_pred EEEEcHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhhccCCCCCCCCceEEEEEeeCCcccCC-CCCCCCccccee
Q 042238 228 RFVFDASKIAQLKAEAASEIVPRPSTVEAITALIWKCTRTASRSNHGGSPRPSLLLQGANFRTELVP-PLPDNSVGNCVG 306 (459)
Q Consensus 228 ~f~~s~~~l~~Lk~~~~~~~~~~~St~D~l~A~lW~~~~~ar~~~~~~~~~~~~l~~~vd~R~rl~p-plp~~Y~GN~~~ 306 (459)
.+.++.+..++|++.+... ..+|.++++.|.+-..+.+-.. .....+.+++++|....+ +--.+-+|+.+.
T Consensus 237 ~~~l~~~~~~~l~~~~~~~--~~~t~~~~llaa~~~~l~~~~~------~~dv~ig~~~~gR~~~~~~~~~~~~vG~f~n 308 (466)
T 2xhg_A 237 RIRLHPEETEQLLKHANQA--YQTEINDLLLAALGLAFAEWSK------LAQIVIHLEGHGREDIIEQANVARTVGWFTS 308 (466)
T ss_dssp EEECCHHHHHHHHHTGGGT--TTCCHHHHHHHHHHHHHHHHHC------CSEEEEEEEECCCCSCSTTCCCTTCCSCCCE
T ss_pred EEEcCHHHHHHHHHHhHHh--hCCCHHHHHHHHHHHHHHHHhC------CCceEEEecCCCCCccccCCCccccccceee
Confidence 8899999999999877532 3478999998876655555432 246789999999986421 123467788777
Q ss_pred eeeeeecCCc-ccHHHHHHHHHHHHHHH
Q 042238 307 YAVAQTGEKE-TKLQDLVCELRRAKEEF 333 (459)
Q Consensus 307 ~~~~~~~~~e-~~l~~~A~~iR~ai~~~ 333 (459)
.....+.... .++.+++..|++.+..+
T Consensus 309 ~lplr~~~~~~~~~~~~l~~v~~~~~~~ 336 (466)
T 2xhg_A 309 QYPVLLDLKQTAPLSDYIKLTKENMRKI 336 (466)
T ss_dssp EEEEEEECSCCCSHHHHHHHHHHHHHHS
T ss_pred eccEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 6666665543 68889999999988765
No 9
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=98.42 E-value=1.2e-05 Score=81.24 Aligned_cols=241 Identities=14% Similarity=0.051 Sum_probs=145.1
Q ss_pred hHHHHHHHHHHhcccCCCCCceecCCceeEeCCCCeEEEEEEeccChhhhcCCCCh-hhh----cccCCCCCCCCCCCCC
Q 042238 63 ISRRLKSSLSETLTKFYPFAGKVKDDFSIECNDDGVEFIEGRANGFLSQYLQEPDH-NLL----SEFHPFGKEGPVAGKD 137 (459)
Q Consensus 63 ~~~~L~~sL~~~L~~~p~LaGrv~~~~~i~~~~~gv~f~~a~~~~~~~~l~~~p~~-~~~----~~l~p~~~~~~~~~~~ 137 (459)
..++|++++.+++..+|.|--++...-.+........+. +.++...+.. ... ....- .++ +...
T Consensus 34 d~~~L~~A~~~lv~rh~~LRt~f~~~~~~v~~~~~~~~~-------~~d~~~~~~~~~~~~~~~~~~~~-~~f---dl~~ 102 (436)
T 1l5a_A 34 DTTLLLRALHLTVSEIDLFRARFSAQGELYWHPFSPPID-------YQDLSIHLEAEPLAWRQIEQDLQ-RSS---TLID 102 (436)
T ss_dssp CHHHHHHHHHHHHHTCGGGGEEECTTCCEEECSSCCCCE-------EEECTTCTTHHHHHHHHHHHHHT-SCC---CCBT
T ss_pred CHHHHHHHHHHHHHHhheeEEEEEecCCeECCCcCCCcc-------EEeCCCCCCHHHHHHHHHHHHhc-CCC---CcCC
Confidence 389999999999999999988886210011111111111 1112111110 001 11111 111 2224
Q ss_pred CCeEEEEEEEEecCcEEEEeeecccccchhHHHHHHHHHHHHhcC----CCCCCCCCCCCCCCCccc-----cccCCCC-
Q 042238 138 SPLLIVQATFFKCGGVAIATCASHVLIDGMSLATFINCWAATARV----DDHHQPSKLPASMLPQYV-----TASLFPA- 207 (459)
Q Consensus 138 ~Pll~vQvt~~~cGG~iL~~~~~H~v~Dg~g~~~fl~~wa~~~rg----~~~~~~~~~~~~~~P~~d-----r~~l~~~- 207 (459)
.|++++.+-....+...|.+.+||.++||.|+..|++.+.+.+++ .. .+.+ ..++-+ +..+...
T Consensus 103 ~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~~~~~g~~----~~~~--~~~~~~~~~~~~~~~~~~~ 176 (436)
T 1l5a_A 103 APITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQT----PTAA--FKPYQSYLEEEAAYLTSHR 176 (436)
T ss_dssp SCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHTCC----CCCC--CCCHHHHHHHHHHHHTSHH
T ss_pred CCCeEEEEEEEcCCEEEEEEeehhheecHhHHHHHHHHHHHHHHHHhcCCC----CCCC--ccCHHHHHHHHHHhhccHh
Confidence 688887777666577999999999999999999999999999874 32 1110 112111 0000000
Q ss_pred ------------CCCC--CCCCCCC-CCCCCeeEEEEEEcHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhhccCC
Q 042238 208 ------------SEAV--SSYPLRF-SPSERVEFNRFVFDASKIAQLKAEAASEIVPRPSTVEAITALIWKCTRTASRSN 272 (459)
Q Consensus 208 ------------~~~~--p~~~~~~-~~~~~~~~~~f~~s~~~l~~Lk~~~~~~~~~~~St~D~l~A~lW~~~~~ar~~~ 272 (459)
.+.+ ..+|... ..........+.++.+..++|++.|... .+|.+.++.|.+-..+.+-.
T Consensus 177 ~~~~~~~W~~~l~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~~a~~~---~~t~~~~l~aa~~~~L~~~~--- 250 (436)
T 1l5a_A 177 YWQDKQFWQGYLREAPDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANAN---QIGWPDALVALCALYLESAE--- 250 (436)
T ss_dssp HHHHHHHHHHHHHTSCCCCBCCTTCCGGGCCEEEEEEECCHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHhcCCCCcccCCCCCCCCcccceeeEEecCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHhh---
Confidence 0110 1122111 1122345678899999999999999863 58899999887655554432
Q ss_pred CCCCCCceEEEEEeeCCcccCCCCCCCCcccceeeeeeeecCCc-ccHHHHHHHHHHHHHHH
Q 042238 273 HGGSPRPSLLLQGANFRTELVPPLPDNSVGNCVGYAVAQTGEKE-TKLQDLVCELRRAKEEF 333 (459)
Q Consensus 273 ~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~~~e-~~l~~~A~~iR~ai~~~ 333 (459)
+ +...++.++++|.. +--.+-+|+.+......+.... .++.+++..+++.+.+.
T Consensus 251 --g--~dv~ig~~~~~R~~---~~~~~~vG~f~n~lplr~~~~~~~t~~~~l~~v~~~~~~~ 305 (436)
T 1l5a_A 251 --P--DAPWLWLPFMNRWG---SVAANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSL 305 (436)
T ss_dssp --T--TCCEEEEEECCCTT---SGGGGSCSCCCEEEEEECCCCTTCBHHHHHHHHHHHHHHH
T ss_pred --C--CceEEeeecccCCC---hHHhcCcceEEEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 3 45789999999974 2235677887776666666553 68889999998887764
No 10
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=98.34 E-value=6.4e-05 Score=77.34 Aligned_cols=274 Identities=13% Similarity=0.035 Sum_probs=152.5
Q ss_pred ccccCCccccc-------ccCccccEEEEecCCCCCCcccchhhhHHHHHHHHHHhcccCCCCCceecC---CceeEeCC
Q 042238 26 RNFKRSLMDQI-------NYPMYTTGIFIYKVNDDDDLSVKAGRISRRLKSSLSETLTKFYPFAGKVKD---DFSIECND 95 (459)
Q Consensus 26 ~~~~LS~lD~~-------~~~~y~~~~~~f~~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrv~~---~~~i~~~~ 95 (459)
..+|||+.-+- .+.......+.|..+.. ...++|++++.+++..+|.|--++.. ... ....
T Consensus 12 ~~~Pls~~Q~~~~~~~~~~~~~~y~~~~~~~l~g~--------ld~~~L~~A~~~lv~rh~~LRt~f~~~~~~~~-~v~~ 82 (493)
T 4hvm_A 12 GLRRASFLQRGAWRWLREAPPAAAFAARGLLGSGR--------IDDDRLAAAADEVLDAFPLLRVNFVDDDGLWM-RTRE 82 (493)
T ss_dssp CEEECCHHHHHHHHHHTTSCGGGGEEEEEEEEESS--------CCHHHHHHHHHHHHHHCGGGGEEEEESSSEEE-EECS
T ss_pred CCCCCCHHHHHHHHHHhhCCCCcceeEEEEEEeCC--------CCHHHHHHHHHHHHHhchhceeEEEccCCEEE-EecC
Confidence 56888877441 12111223344444433 24899999999999999999888752 222 1111
Q ss_pred CCeEEEEEEeccChhhhcCCCCh-hhh----cccCCCCCCCCCCCCCCCeEEEEEEEEecCcEEEEeeecccccchhHHH
Q 042238 96 DGVEFIEGRANGFLSQYLQEPDH-NLL----SEFHPFGKEGPVAGKDSPLLIVQATFFKCGGVAIATCASHVLIDGMSLA 170 (459)
Q Consensus 96 ~gv~f~~a~~~~~~~~l~~~p~~-~~~----~~l~p~~~~~~~~~~~~Pll~vQvt~~~cGG~iL~~~~~H~v~Dg~g~~ 170 (459)
....+.+.. +...+.. ... ....-.. .+....|++++.+.....+...|.+.+||.++||.|+.
T Consensus 83 ~~~~~~~~d-------~~~~~~~~~~~~~~~~~~~~~~----fdl~~~pl~r~~l~~~~~~~~~l~l~~HH~i~Dg~S~~ 151 (493)
T 4hvm_A 83 NADALVRSD-------LRGHPDPQARCVELLRADRDRP----TDPERDPLVRLHLVRLSETDVVLGVVAHQMLLDARSRY 151 (493)
T ss_dssp CCCCEEEEE-------CTTSSSHHHHHHHHHHHHHSSC----CCTTTSCSEEEEEEECSSSEEEEEEEEETTTCCHHHHH
T ss_pred CCCCceEEE-------CCCCCchHHHHHHHHHHHhcCC----CCCCCCCeEEEEEEEECCCcEEEEEecchhhccHHHHH
Confidence 112222211 1111111 111 1111111 12224688888877766456899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCc--cccc--cCCCC-------------CCCCCCCCCCCCCCCCeeEEEEEEcH
Q 042238 171 TFINCWAATARVDDHHQPSKLPASMLPQ--YVTA--SLFPA-------------SEAVSSYPLRFSPSERVEFNRFVFDA 233 (459)
Q Consensus 171 ~fl~~wa~~~rg~~~~~~~~~~~~~~P~--~dr~--~l~~~-------------~~~~p~~~~~~~~~~~~~~~~f~~s~ 233 (459)
.|++.+.+.+.|... +. ....+ +.+. .+... .+.++ +..............+.++.
T Consensus 152 ~l~~~l~~~Y~g~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~-l~~~~~~~~~~~~~~~~l~~ 224 (493)
T 4hvm_A 152 MVLGAVWQAYYGRFR----PA--QYRDFAEVADFHPLDRETVRVARHRWWSRRLPALPV-RGGDGGPVGPPETSRLRVPG 224 (493)
T ss_dssp HHHHHHHHHHTTCCC----GG--GSBCGGGTTTCCTTCSHHHHHHHHHHHHHHGGGSCC-CC-------CCEEEEEEEEH
T ss_pred HHHHHHHHHhCCCCC----Cc--CHHHHHHHHhhhhcccChhhHHHHHHHHHhccCCCC-CCCCCCCCCCCeeEEEEcCH
Confidence 999999999966541 11 00000 1111 01000 01111 11000111125677889999
Q ss_pred HHHHHHHHHHhcCCCCCCC--hhHHHHHHHHHHHHhhccCC------CCCCCCceEEEEEeeCCcccCCCCCCCCcccce
Q 042238 234 SKIAQLKAEAASEIVPRPS--TVEAITALIWKCTRTASRSN------HGGSPRPSLLLQGANFRTELVPPLPDNSVGNCV 305 (459)
Q Consensus 234 ~~l~~Lk~~~~~~~~~~~S--t~D~l~A~lW~~~~~ar~~~------~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~ 305 (459)
+..++|++.|.. ..+| .+.++.|.+-..+.+-+... ..+ .....++.++++|.. +--.+.+|+++
T Consensus 225 ~~~~~l~~~a~~---~~vt~~~~~~l~aa~a~~L~~~~~~~~~~~~~~~g-~~dv~~g~~~~gR~~---~~~~~~vG~f~ 297 (493)
T 4hvm_A 225 SRWQALTEPGGP---LGGNGSLAMAALTAWWLWTQGAGTGTDTGAGTGTG-KDSLYLSTEVDLRDH---LQLGSVVGPLT 297 (493)
T ss_dssp HHHHHHHCC---------CHHHHHHHHHHHHHHHC-----------------CEEEEEEEEEHHHH---TTCCSBCSCCE
T ss_pred HHHHHHHHHHHH---cCCCchHHHHHHHHHHHHHHHhhhcccccccCcCC-CCCEEEEeeccCCCC---cchhcCeEeee
Confidence 999999988875 3578 99999887655555441100 001 256889999999976 23457778887
Q ss_pred eeeeeeecCC---cccHHHHHHHHHHHHHHH
Q 042238 306 GYAVAQTGEK---ETKLQDLVCELRRAKEEF 333 (459)
Q Consensus 306 ~~~~~~~~~~---e~~l~~~A~~iR~ai~~~ 333 (459)
......+... +.++.+++..+++.+.+.
T Consensus 298 n~lplr~~~~~~~~~t~~~~l~~v~~~~~~~ 328 (493)
T 4hvm_A 298 DRVVFGVDLTGLREPSFRDLMSRTQAGFLDA 328 (493)
T ss_dssp EEEEEEEECTTCSSCBHHHHHHHHHHHHHHH
T ss_pred ceeEEEEecCCCcCCCHHHHHHHHHHHHHHH
Confidence 6655555443 468888888888877664
No 11
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=98.06 E-value=0.00022 Score=82.41 Aligned_cols=250 Identities=9% Similarity=0.028 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHhcccCCCCCceecC---C--ceeEeCCCCeEEEEEEeccChhhhcCCCCh---hhhcccCC---CCCCC
Q 042238 63 ISRRLKSSLSETLTKFYPFAGKVKD---D--FSIECNDDGVEFIEGRANGFLSQYLQEPDH---NLLSEFHP---FGKEG 131 (459)
Q Consensus 63 ~~~~L~~sL~~~L~~~p~LaGrv~~---~--~~i~~~~~gv~f~~a~~~~~~~~l~~~p~~---~~~~~l~p---~~~~~ 131 (459)
..+.|++++.+++..++.|--++.. . .++........+.+ .|+...+.. ..+..+.- ..++
T Consensus 48 d~~~l~~A~~~lv~rH~~LRt~f~~~~~~~p~Q~v~~~~~~~~~~-------~d~~~~~~~~~~~~~~~~~~~~~~~~f- 119 (1304)
T 2vsq_A 48 NIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLKKRQFHIEE-------IDLTHLTGSEQTAKINEYKEQDKIRGF- 119 (1304)
T ss_dssp CHHHHHHHHHHHHHHCGGGGEEEECSSCSSCEEEEESCCCCCEEE-------EECTTSCHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHhhhhceEEEEEcCCCeEEEEECCCCCCceEE-------EECCCCCchhHHHHHHHHHHHHhcCCC-
Confidence 4899999999999999999888752 1 12222221111111 122211110 01111100 0011
Q ss_pred CCCCCCCCeEEEEEEEEecCcEEEEeeecccccchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCccccccC-CCC---
Q 042238 132 PVAGKDSPLLIVQATFFKCGGVAIATCASHVLIDGMSLATFINCWAATARVDDHHQPSKLPASMLPQYVTASL-FPA--- 207 (459)
Q Consensus 132 ~~~~~~~Pll~vQvt~~~cGG~iL~~~~~H~v~Dg~g~~~fl~~wa~~~rg~~~~~~~~~~~~~~P~~dr~~l-~~~--- 207 (459)
+....|++++.+-....+...|-+.+||.++||.|+..|++.+++.+++.........++ ..++-|-... ...
T Consensus 120 --dl~~~pl~r~~l~~~~~~~~~l~~~~HHii~DG~S~~~l~~el~~~Y~~~~~g~~~~l~~-~~~y~d~~~~~~~~~~~ 196 (1304)
T 2vsq_A 120 --DLTRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFGIVVQDLFKVYNALREQKPYSLPP-VKPYKDYIKWLEKQDKQ 196 (1304)
T ss_dssp --CTTTSCSEEEEEEEEETTEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHTTCCCCCCC-CCCTHHHHHHHHTSCHH
T ss_pred --CCCCCCcEEEEEEEECCCcEEEEEecCceeechhhHHHHHHHHHHHHHHhhcCCCCCCCC-cccHHHHHHHHhcchhh
Confidence 223468898888877757789999999999999999999999999886521000011110 1122110000 000
Q ss_pred ----------CCCC--CCCCC---CCCCCCCeeEEEEEEcHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhhccCC
Q 042238 208 ----------SEAV--SSYPL---RFSPSERVEFNRFVFDASKIAQLKAEAASEIVPRPSTVEAITALIWKCTRTASRSN 272 (459)
Q Consensus 208 ----------~~~~--p~~~~---~~~~~~~~~~~~f~~s~~~l~~Lk~~~~~~~~~~~St~D~l~A~lW~~~~~ar~~~ 272 (459)
.+.+ ..++. +...........|.++.+..++||+.|... .+|.+.+|.|.+-..+.|--.
T Consensus 197 ~~~~yW~~~L~~~~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~a~~~---~~T~~~vllaa~a~~L~r~tg-- 271 (1304)
T 2vsq_A 197 ASLRYWREYLEGFEGQTTFAEQRKKQKDGYEPKELLFSPSEAETKAFTELAKSQ---HTTLSTALQAVWSVLISRYQQ-- 271 (1304)
T ss_dssp HHHHHHHHHHTTCCCCCTTTTTCCCSSCCCCEEEEEECCCHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHhCCCCccccCCCCCCccccccCcceEEEecCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhcC--
Confidence 0110 11221 111223345677889999999999999864 488999998865444444322
Q ss_pred CCCCCCceEEEEEeeCCcccCCCCCCCCcccceeeeeeeecCC-cccHHHHHHHHHHHHHHH
Q 042238 273 HGGSPRPSLLLQGANFRTELVPPLPDNSVGNCVGYAVAQTGEK-ETKLQDLVCELRRAKEEF 333 (459)
Q Consensus 273 ~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~~~-e~~l~~~A~~iR~ai~~~ 333 (459)
.+...++.++++|..-.+.+ ++-+|+.+......+... +.++.++...+++...+.
T Consensus 272 ----~~dvv~G~pvsgR~~~~~~~-~~~vG~fvntlplr~~~~~~~s~~~ll~~v~~~~~~a 328 (1304)
T 2vsq_A 272 ----SGDLAFGTVVSGRPAEIKGV-EHMVGLFINVVPRRVKLSEGITFNGLLKRLQEQSLQS 328 (1304)
T ss_dssp ----CSEEEEEEEECCCCTTSTTG-GGCCSSCCEEEEEEEECCTTCBHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEEEEeCCCCccchhh-hcccccceeEEEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence 25688999999997532212 466777776665566554 368888888888877653
No 12
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=97.78 E-value=0.0011 Score=68.67 Aligned_cols=155 Identities=12% Similarity=0.037 Sum_probs=96.2
Q ss_pred EEEEeeecccccchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCccc----cccCCCCC-C---CC-------------
Q 042238 153 VAIATCASHVLIDGMSLATFINCWAATARVDDHHQPSKLPASMLPQYV----TASLFPAS-E---AV------------- 211 (459)
Q Consensus 153 ~iL~~~~~H~v~Dg~g~~~fl~~wa~~~rg~~~~~~~~~~~~~~P~~d----r~~l~~~~-~---~~------------- 211 (459)
.-|.+.+||.++||.|...|++.+=+......... ... ..|.++ ...|.|+- + .+
T Consensus 178 ~~lv~~~~H~~~DG~g~~~f~~~ll~~L~~~~~~~-~~~---~~~~~~~g~E~~~L~P~~e~~~~~p~~~~~~e~~~~~~ 253 (519)
T 3fot_A 178 VEILFHSNHLFWDGIGCRKFVGDLFRLVGSYIGRS-DSR---EMKKIQWGQEIKNLSPPVVDSLKLDINTLGSEFDDKCT 253 (519)
T ss_dssp EEEEEEECGGGCCHHHHHHHHHHHHHHHTTSTTC--CGG---GSCCCCTTTTGGGSCCCTGGGBSSCGGGCCHHHHHHHH
T ss_pred EEEEEEeCceeEchHhHHHHHHHHHHHHHhhhccC-Ccc---CCCcCCCCcccccCCcCHHHHhCCCCCCCCHHHHHHHH
Confidence 56778899999999999999999988766422100 000 111111 11122211 0 00
Q ss_pred ----------C--CCCCCCCCCCCeeEEEEEEcHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhhccCCCCCCCCc
Q 042238 212 ----------S--SYPLRFSPSERVEFNRFVFDASKIAQLKAEAASEIVPRPSTVEAITALIWKCTRTASRSNHGGSPRP 279 (459)
Q Consensus 212 ----------p--~~~~~~~~~~~~~~~~f~~s~~~l~~Lk~~~~~~~~~~~St~D~l~A~lW~~~~~ar~~~~~~~~~~ 279 (459)
+ .+| .......-....+.|+.++.++|++.|+...+..+|-+.+|.|.+-.++.+............
T Consensus 254 ~~~~~~~~~~~~~~~P-~~~~~~~~~~~~~~ls~~~t~~L~~~ck~~~~~g~Tvt~~l~Aa~~~al~~~~~~~~~~~~~~ 332 (519)
T 3fot_A 254 EYTSALVANYKSRGMK-FQPGLALPRCVIHKLSADESIDIVKAVKTRLGPGFTISHLTQAAIVLALLDHLKPNDLSDDEV 332 (519)
T ss_dssp HHHHHHHHHHHSCCSB-CCCCCCCEEEEEEECCHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHC----CCTTCC
T ss_pred HHHHHhhcCCCcccCC-CCCCCCCcceEEEEcCHHHHHHHHHHHHhcCCCCeeHHHHHHHHHHHHHHhhcCCcccCCCcc
Confidence 0 001 001112334577889999999999999986556799999998877777766432101011246
Q ss_pred eEEEEEeeCCcccCCCCCCCCcccceeeeeeee
Q 042238 280 SLLLQGANFRTELVPPLPDNSVGNCVGYAVAQT 312 (459)
Q Consensus 280 ~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~ 312 (459)
..+.++||+|+++.++.-.+|+|.+........
T Consensus 333 ~~~~~pvnlR~~l~~~~~~n~~~~~~~~~~~~v 365 (519)
T 3fot_A 333 FISPTSVDGRRWLREDIASNFYAMCQTAAVVRI 365 (519)
T ss_dssp EEEEEEEECGGGBCHHHHTSCCSCCEEEEEEEE
T ss_pred EEEEeeeeccccCCCcccccccceeeeeeeeEe
Confidence 789999999999987655688888887655444
No 13
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=67.15 E-value=4.6 Score=36.16 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCeEEEEEEEEecCc--EEEEeeecccccchhHHHHHHHHHHHHhc
Q 042238 138 SPLLIVQATFFKCGG--VAIATCASHVLIDGMSLATFINCWAATAR 181 (459)
Q Consensus 138 ~Pll~vQvt~~~cGG--~iL~~~~~H~v~Dg~g~~~fl~~wa~~~r 181 (459)
.|++.+--..-+.|. +-|++++||.+.||.-...|++.+.+...
T Consensus 164 ~PIi~~G~~~~~~~~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le 209 (213)
T 3cla_A 164 APIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINRLQELCN 209 (213)
T ss_dssp SCEEEEECCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred ccEEEeeEEEEECCeEEEEEEEEEcccccChHHHHHHHHHHHHHHH
Confidence 587754322223232 68899999999999999999999998764
No 14
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=65.94 E-value=5 Score=36.04 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCeEEEEEEEEecCc--EEEEeeecccccchhHHHHHHHHHHHHh
Q 042238 138 SPLLIVQATFFKCGG--VAIATCASHVLIDGMSLATFINCWAATA 180 (459)
Q Consensus 138 ~Pll~vQvt~~~cGG--~iL~~~~~H~v~Dg~g~~~fl~~wa~~~ 180 (459)
.|++.+=--.-+.|. +-|++++||.+.||.-...|++.+.+..
T Consensus 172 ~PIi~~Gk~~~~~~r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 172 YPLLNAGKAIIREGRLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp SCEEEECCCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEecceEEEECCcEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence 687753211112122 6789999999999999999999998754
No 15
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=65.30 E-value=5.2 Score=35.97 Aligned_cols=43 Identities=16% Similarity=0.383 Sum_probs=33.1
Q ss_pred CCeEEEEEEEEecCc---EEEEeeecccccchhHHHHHHHHHHHHhc
Q 042238 138 SPLLIVQATFFKCGG---VAIATCASHVLIDGMSLATFINCWAATAR 181 (459)
Q Consensus 138 ~Pll~vQvt~~~cGG---~iL~~~~~H~v~Dg~g~~~fl~~wa~~~r 181 (459)
.|++.+---.-+ +| +-|++++||.+.||.-...|++.+.+...
T Consensus 168 ~pIi~~G~~~~~-~~r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le 213 (219)
T 1q23_A 168 APVFTMGKYYTQ-GDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCD 213 (219)
T ss_dssp SCEEEECCCEEE-TTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEecccEEEE-CCcEEEEEEEEEEchhhChHHHHHHHHHHHHHHh
Confidence 577755332223 34 78899999999999999999999988764
No 16
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=62.39 E-value=5.4 Score=36.01 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=27.4
Q ss_pred EEEEeeecccccchhHHHHHHHHHHHHhcC
Q 042238 153 VAIATCASHVLIDGMSLATFINCWAATARV 182 (459)
Q Consensus 153 ~iL~~~~~H~v~Dg~g~~~fl~~wa~~~rg 182 (459)
+-|+++++|.+.||.-...|++.+.+....
T Consensus 187 m~lsls~DHRviDGa~aa~Fl~~l~~~le~ 216 (224)
T 3rqc_A 187 MYLSLSCDHRLIDGAVATRFIVDLKKVIED 216 (224)
T ss_dssp CCEEEEEETTTSCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEeccceecHHHHHHHHHHHHHHHhC
Confidence 558999999999999999999999998874
No 17
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=61.15 E-value=6.8 Score=35.56 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=27.2
Q ss_pred EEEEeeecccccchhHHHHHHHHHHHHhcC
Q 042238 153 VAIATCASHVLIDGMSLATFINCWAATARV 182 (459)
Q Consensus 153 ~iL~~~~~H~v~Dg~g~~~fl~~wa~~~rg 182 (459)
+-|+++++|.+.||.-...|++.+.+....
T Consensus 196 m~lsls~DHRviDGa~aa~Fl~~lk~~le~ 225 (233)
T 1scz_A 196 MYLALSYDHRLIDGRESVGFLVTIKELLED 225 (233)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEcceeechHHHHHHHHHHHHHHhC
Confidence 669999999999999999999999987753
No 18
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=60.89 E-value=6.2 Score=35.96 Aligned_cols=29 Identities=14% Similarity=0.297 Sum_probs=26.9
Q ss_pred EEEEeeecccccchhHHHHHHHHHHHHhc
Q 042238 153 VAIATCASHVLIDGMSLATFINCWAATAR 181 (459)
Q Consensus 153 ~iL~~~~~H~v~Dg~g~~~fl~~wa~~~r 181 (459)
+-|+++++|.+.||.-...|++.+.+...
T Consensus 204 m~lsls~DHRviDGa~aa~Fl~~lk~~le 232 (239)
T 3b8k_A 204 MSVTLSCDHRVVDGAVGAQWLAEFRKYLE 232 (239)
T ss_dssp EEEEECCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcceeechHHHHHHHHHHHHHHh
Confidence 78999999999999999999999998764
No 19
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=60.83 E-value=6.9 Score=35.76 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=26.8
Q ss_pred EEEEeeecccccchhHHHHHHHHHHHHhc
Q 042238 153 VAIATCASHVLIDGMSLATFINCWAATAR 181 (459)
Q Consensus 153 ~iL~~~~~H~v~Dg~g~~~fl~~wa~~~r 181 (459)
+-|+++++|.+.||.-...|++.+.+.+.
T Consensus 208 m~lsls~DHRviDGa~aa~Fl~~lk~~le 236 (243)
T 1dpb_A 208 LPLSLSYDCRVINGAAAARFTKRLGDLLA 236 (243)
T ss_dssp EEEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECcccccHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999998765
No 20
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=59.15 E-value=7.6 Score=35.93 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=26.6
Q ss_pred EEEEeeecccccchhHHHHHHHHHHHHhc
Q 042238 153 VAIATCASHVLIDGMSLATFINCWAATAR 181 (459)
Q Consensus 153 ~iL~~~~~H~v~Dg~g~~~fl~~wa~~~r 181 (459)
+-|+++++|.+.||.-...|++.+.+.+.
T Consensus 224 m~lsls~DHRviDGa~aa~Fl~~lk~~Le 252 (262)
T 2ii3_A 224 MNVSWSADHRIIDGATVSRFSNLWKSYLE 252 (262)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECcceecHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999998765
No 21
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=53.18 E-value=11 Score=34.70 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=27.9
Q ss_pred EEEEeeecccccchhHHHHHHHHHHHHhcCC
Q 042238 153 VAIATCASHVLIDGMSLATFINCWAATARVD 183 (459)
Q Consensus 153 ~iL~~~~~H~v~Dg~g~~~fl~~wa~~~rg~ 183 (459)
+-|+++++|.+.||.-...|++.|.+....-
T Consensus 210 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P 240 (256)
T 3mae_A 210 VNLCLSIDHRILDGLLAGKFLQAIKANVEKI 240 (256)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEEccccccHHHHHHHHHHHHHHHhCh
Confidence 4599999999999999999999999988753
No 22
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=51.62 E-value=12 Score=34.28 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=27.3
Q ss_pred EEEEeeecccccchhHHHHHHHHHHHHhcC
Q 042238 153 VAIATCASHVLIDGMSLATFINCWAATARV 182 (459)
Q Consensus 153 ~iL~~~~~H~v~Dg~g~~~fl~~wa~~~rg 182 (459)
+-|+++++|.+.||.-...|++.|.+....
T Consensus 205 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~ 234 (250)
T 3l60_A 205 MTLTCVFDHRVVDGAQVAQFMCELRDLIES 234 (250)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHS
T ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHhC
Confidence 568999999999999999999999988764
No 23
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=38.76 E-value=18 Score=19.68 Aligned_cols=19 Identities=5% Similarity=0.326 Sum_probs=15.5
Q ss_pred CCCChhHHHHHHHHHHHHh
Q 042238 249 PRPSTVEAITALIWKCTRT 267 (459)
Q Consensus 249 ~~~St~D~l~A~lW~~~~~ 267 (459)
+-+++.|-|+-++|+++..
T Consensus 6 svftsqdylsdhlwralna 24 (26)
T 2xl1_A 6 SVFTSQDYLSDHLWRALNA 24 (26)
T ss_pred ceeecHHHHHHHHHHHHhc
Confidence 3467889999999998863
No 24
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=38.57 E-value=74 Score=21.65 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=32.8
Q ss_pred CCeeEEEEEEcHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhhccC
Q 042238 222 ERVEFNRFVFDASKIAQLKAEAASEIVPRPSTVEAITALIWKCTRTASRS 271 (459)
Q Consensus 222 ~~~~~~~f~~s~~~l~~Lk~~~~~~~~~~~St~D~l~A~lW~~~~~ar~~ 271 (459)
.+.-...|+||.++-+.|++.+.++ -|.+..+|=|.|.++..-
T Consensus 13 k~~~~Vs~Y~SkEey~~L~klA~eE-------~eSV~sfIKR~IlK~l~y 55 (66)
T 2k1o_A 13 KRNFSVTFYLSKEEHDVLRRLADEE-------VESVNSFVKRHILKTIIY 55 (66)
T ss_dssp CCCEEEEEEEEHHHHHHHHHHHHTT-------CSCHHHHHHHHHHHHHCS
T ss_pred ccceEEEEEecHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4455688999999999999999875 344667777777777543
No 25
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=33.05 E-value=52 Score=21.59 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=26.5
Q ss_pred eEEEEEEcHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhhc
Q 042238 225 EFNRFVFDASKIAQLKAEAASEIVPRPSTVEAITALIWKCTRTAS 269 (459)
Q Consensus 225 ~~~~f~~s~~~l~~Lk~~~~~~~~~~~St~D~l~A~lW~~~~~ar 269 (459)
....|+||.++-+.|++.+.++. |.+..++=+.|.++.
T Consensus 2 ~~Vs~Y~SkEey~~L~klA~eE~-------eSV~sfIKR~IlK~l 39 (55)
T 1x93_A 2 RAVSLYFSDEQYQKLEKMANEEE-------ESVGSYIKRYILKAL 39 (55)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTT-------SCTTHHHHHHHHHHH
T ss_pred ceEEEEecHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 35679999999999999998753 223344555555553
No 26
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=31.09 E-value=10 Score=37.75 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=0.0
Q ss_pred EEEEeeecccccchhHHHHHHHHHHHHhcC
Q 042238 153 VAIATCASHVLIDGMSLATFINCWAATARV 182 (459)
Q Consensus 153 ~iL~~~~~H~v~Dg~g~~~fl~~wa~~~rg 182 (459)
+-|+++++|.+.||.-...|++.|.+.+..
T Consensus 391 m~lsls~DHRviDG~~aa~Fl~~lk~~Le~ 420 (428)
T 3dva_I 391 LALSLSFDHRMIDGATAQKALNHIKRLLSD 420 (428)
T ss_dssp ------------------------------
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHHhC
Confidence 359999999999999999999999887653
Done!