Query 042238
Match_columns 459
No_of_seqs 143 out of 1208
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 06:55:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042238.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042238hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q9ja1 c.43.1.2 (A:1-175) Pol 97.3 0.00035 2.6E-08 59.2 9.0 131 29-181 9-144 (175)
2 d1q9ja2 c.43.1.2 (A:181-418) P 97.2 0.0032 2.4E-07 55.6 14.2 102 225-333 32-134 (238)
3 d1l5aa1 c.43.1.2 (A:1-174) Vib 97.1 0.00065 4.7E-08 57.4 8.5 107 63-182 34-147 (174)
4 d3claa_ c.43.1.1 (A:) Chloramp 77.3 1.5 0.00011 37.1 5.6 44 138-182 164-210 (213)
5 d1q23a_ c.43.1.1 (A:) Chloramp 73.2 1.3 9.6E-05 37.6 4.0 42 138-181 164-209 (214)
6 d1l5aa2 c.43.1.2 (A:175-424) V 62.0 39 0.0029 27.7 20.7 99 223-334 33-132 (250)
7 d1b5sa_ c.43.1.1 (A:) Dihydrol 47.3 6.6 0.00048 33.6 3.7 29 153-181 207-235 (242)
8 d1dpba_ c.43.1.1 (A:) Dihydrol 44.9 8.4 0.00061 33.0 4.0 27 155-181 210-236 (243)
9 d1scza_ c.43.1.1 (A:) Dihydrol 44.5 8.7 0.00063 32.7 4.0 29 153-181 196-224 (233)
10 d1nm8a1 c.43.1.3 (A:9-385) Car 22.6 39 0.0028 30.5 4.8 37 143-181 298-334 (377)
No 1
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.32 E-value=0.00035 Score=59.18 Aligned_cols=131 Identities=14% Similarity=0.042 Sum_probs=73.7
Q ss_pred cCCccccccc--CccccEEEEecCCCCCCcccchhhhHHHHHHHHHHhcccCCCCCceecC---CceeEeCCCCeEEEEE
Q 042238 29 KRSLMDQINY--PMYTTGIFIYKVNDDDDLSVKAGRISRRLKSSLSETLTKFYPFAGKVKD---DFSIECNDDGVEFIEG 103 (459)
Q Consensus 29 ~LS~lD~~~~--~~y~~~~~~f~~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrv~~---~~~i~~~~~gv~f~~a 103 (459)
+|+..+++.. ..++...+-++.+- ..+.|++++..+++.+|.|-.+++. +...............
T Consensus 9 ~l~~~e~~~~~~~~~~~~~~~l~g~l----------d~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~~~~~~~~~~~~~~ 78 (175)
T d1q9ja1 9 KLSHSEEVFAQYEVFTSMTIQLRGVI----------DVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGIC 78 (175)
T ss_dssp ECCHHHHHHHHTTCEEEEEEEEESCC----------CHHHHHHHHHHHHHHCGGGSEEEEECTTSSEEEEECCSSSCCCE
T ss_pred HhCHHhhhcccCceEEEEEEEEcCCC----------CHHHHHHHHHHHHHhchhheEEEEEeCCeeEEEEECCCCCccEE
Confidence 5777887664 34444444444333 4899999999999999999999862 1111111111000000
Q ss_pred EeccChhhhcCCCChhhhcccCCCCCCCCCCCCCCCeEEEEEEEEecCcEEEEeeecccccchhHHHHHHHHHHHHhc
Q 042238 104 RANGFLSQYLQEPDHNLLSEFHPFGKEGPVAGKDSPLLIVQATFFKCGGVAIATCASHVLIDGMSLATFINCWAATAR 181 (459)
Q Consensus 104 ~~~~~~~~l~~~p~~~~~~~l~p~~~~~~~~~~~~Pll~vQvt~~~cGG~iL~~~~~H~v~Dg~g~~~fl~~wa~~~r 181 (459)
..+.... .........+.. ...+.|+..+.+..- .++..|.+++||.++||.|+..|++.+.+.+.
T Consensus 79 -----~~d~~~~-~~~~~~~~~~~~-----l~~~~~l~~~~i~~~-~~~~~l~l~~HH~i~Dg~S~~~ll~el~~~Y~ 144 (175)
T d1q9ja1 79 -----VIDGTAA-TNGSPSGNAELR-----LDQSVSLLHLQLILR-EGGAELTLYLHHCMADGHHGAVLVDELFSRYT 144 (175)
T ss_dssp -----EEC-------------CCCC-----CCTTTCSEEEEEECC-SSSCEEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred -----EEEcccc-hhHHHHhhcccC-----ccCCCCeEEEEEEec-CCeEEEEEEccccccCHhHHHHHHHHHHHHHH
Confidence 0000000 000000011111 112466666665443 47888899999999999999999999987664
No 2
>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.17 E-value=0.0032 Score=55.61 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=81.0
Q ss_pred eEEEEEEcHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhhccCCCCCCCCceEEEEEeeCCcccCCCCCCCCcccc
Q 042238 225 EFNRFVFDASKIAQLKAEAASEIVPRPSTVEAITALIWKCTRTASRSNHGGSPRPSLLLQGANFRTELVPPLPDNSVGNC 304 (459)
Q Consensus 225 ~~~~f~~s~~~l~~Lk~~~~~~~~~~~St~D~l~A~lW~~~~~ar~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~ 304 (459)
....+.++.+.-++|++.|.+ ..+|.|+++.|.+-..+.+-... + +....+..+++.|+++.|+...+.+||.
T Consensus 32 ~~~~~~ls~~~t~~l~~~~~~---~~~T~~~~l~aa~~~~l~~~~~~---~-~~~~~~~~~~~~r~~~~~~~~~~~~G~~ 104 (238)
T d1q9ja2 32 PVTRLWLSKQQTSDLMAFGRE---HRLSLNAVVAAAILLTEWQLRNT---P-HVPIPYVYPVDLRFVLAPPVAPTEATNL 104 (238)
T ss_dssp CEEEECCCHHHHHHHHHHHTT---TTCCHHHHHHHHHHHHHHHHHTC---S-SCCEEEEEEEETTTTSSSCCCTTTBSCC
T ss_pred ceEEEEeCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHhCC---C-CccccccccccccccccCccccceeEee
Confidence 345678999999999999986 46899999998765555544331 1 3457889999999999988888999999
Q ss_pred eeeeeeeecCCc-ccHHHHHHHHHHHHHHH
Q 042238 305 VGYAVAQTGEKE-TKLQDLVCELRRAKEEF 333 (459)
Q Consensus 305 ~~~~~~~~~~~e-~~l~~~A~~iR~ai~~~ 333 (459)
+......+.... .++.+++..+++.+...
T Consensus 105 ~~~~~~r~~~~~~~~~~~l~~~v~~~l~~~ 134 (238)
T d1q9ja2 105 LGAASYLAEIGPNTDIVDLASDIVATLRAD 134 (238)
T ss_dssp EEEEEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred eeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 998877777654 68899999998887663
No 3
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=97.13 E-value=0.00065 Score=57.44 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHhcccCCCCCceecCCceeEe--CCCCeEEEEEEeccChhhhcCCCCh--hh---hcccCCCCCCCCCCC
Q 042238 63 ISRRLKSSLSETLTKFYPFAGKVKDDFSIEC--NDDGVEFIEGRANGFLSQYLQEPDH--NL---LSEFHPFGKEGPVAG 135 (459)
Q Consensus 63 ~~~~L~~sL~~~L~~~p~LaGrv~~~~~i~~--~~~gv~f~~a~~~~~~~~l~~~p~~--~~---~~~l~p~~~~~~~~~ 135 (459)
..+.|++|+..++..+|.|--++...-.... ....+.+ .++....+. .. ..... ..++ +.
T Consensus 34 d~~~l~~A~~~l~~rh~~LRt~f~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~---dl 100 (174)
T d1l5aa1 34 DTTLLLRALHLTVSEIDLFRARFSAQGELYWHPFSPPIDY---------QDLSIHLEAEPLAWRQIEQDL-QRSS---TL 100 (174)
T ss_dssp CHHHHHHHHHHHHHTCGGGGEEECTTCCEEECSSCCCCEE---------EECTTCTTHHHHHHHHHHHHH-TSCC---CC
T ss_pred CHHHHHHHHHHHHHhCchheEEEeccCcEEEEEEeeceee---------EecccccchHHHHHHHHHHHH-hCCc---cc
Confidence 4899999999999999999877752111000 0111111 112111110 00 11100 0111 12
Q ss_pred CCCCeEEEEEEEEecCcEEEEeeecccccchhHHHHHHHHHHHHhcC
Q 042238 136 KDSPLLIVQATFFKCGGVAIATCASHVLIDGMSLATFINCWAATARV 182 (459)
Q Consensus 136 ~~~Pll~vQvt~~~cGG~iL~~~~~H~v~Dg~g~~~fl~~wa~~~rg 182 (459)
...|++.+.+-....|...+.+++||.++||.|+..|++.+++.+++
T Consensus 101 ~~~pl~r~~l~~~~~~~~~l~~~~hHii~Dg~S~~~l~~el~~~Y~~ 147 (174)
T d1l5aa1 101 IDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQS 147 (174)
T ss_dssp BTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEEEeCCCceEEeeecccEEEcHhHHHHHHHHHHHHHHH
Confidence 24678888877777678899999999999999999999999988753
No 4
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=77.32 E-value=1.5 Score=37.06 Aligned_cols=44 Identities=20% Similarity=0.401 Sum_probs=33.7
Q ss_pred CCeEEEEEEEEecCc---EEEEeeecccccchhHHHHHHHHHHHHhcC
Q 042238 138 SPLLIVQATFFKCGG---VAIATCASHVLIDGMSLATFINCWAATARV 182 (459)
Q Consensus 138 ~Pll~vQvt~~~cGG---~iL~~~~~H~v~Dg~g~~~fl~~wa~~~rg 182 (459)
.|++.+=--.-+ || +-|++++||.+.||.-...|++.+.+.+..
T Consensus 164 ~Pii~~Gk~~~~-~~r~~m~lsls~dHrviDG~~aa~Fl~~lk~~le~ 210 (213)
T d3claa_ 164 APIITMAKYQQE-GDRLLLPLSVQVHHAVCDGFHVARFINRLQELCNS 210 (213)
T ss_dssp SCEEEEECCEEE-TTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred ccEEecCccEEE-CCEEEEEEEEEecccccccHHHHHHHHHHHHHHhC
Confidence 676654322334 55 569999999999999999999999988653
No 5
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=73.16 E-value=1.3 Score=37.58 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=32.2
Q ss_pred CCeEEE-EEEEEecCc---EEEEeeecccccchhHHHHHHHHHHHHhc
Q 042238 138 SPLLIV-QATFFKCGG---VAIATCASHVLIDGMSLATFINCWAATAR 181 (459)
Q Consensus 138 ~Pll~v-Qvt~~~cGG---~iL~~~~~H~v~Dg~g~~~fl~~wa~~~r 181 (459)
.|.+.+ |+. -+ || +-|++++||.+.||.-...|++.+.+...
T Consensus 164 vpii~~Gk~~-~~-~~r~~mplsls~dHrvvDG~~~a~Fl~~lq~~le 209 (214)
T d1q23a_ 164 APVFTMGKYY-TQ-GDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCD 209 (214)
T ss_dssp SCEEEECCCE-EE-TTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eeEEEecceE-EE-CCEEEEEEEEEecccccchHHHHHHHHHHHHHHh
Confidence 666654 332 24 55 45899999999999999999999998753
No 6
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}
Probab=61.98 E-value=39 Score=27.69 Aligned_cols=99 Identities=14% Similarity=-0.002 Sum_probs=70.6
Q ss_pred CeeEEEEEEcHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhhccCCCCCCCCceEEEEEeeCCcccCCCCCCCCcc
Q 042238 223 RVEFNRFVFDASKIAQLKAEAASEIVPRPSTVEAITALIWKCTRTASRSNHGGSPRPSLLLQGANFRTELVPPLPDNSVG 302 (459)
Q Consensus 223 ~~~~~~f~~s~~~l~~Lk~~~~~~~~~~~St~D~l~A~lW~~~~~ar~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~G 302 (459)
......+.++.+..++|++.|.. ..+|.+.++.|. |..+. ++.. . ....++.+++.|.. +--.+.+|
T Consensus 33 ~~~~~~~~l~~~~~~~l~~~a~~---~~~s~~~~l~aa-~~~~l-~~~~-~----~~~vig~~~~~R~~---~~~~~~~G 99 (250)
T d1l5aa2 33 HAVSLSYTLNSQLNHLLLKLANA---NQIGWPDALVAL-CALYL-ESAE-P----DAPWLWLPFMNRWG---SVAANVPG 99 (250)
T ss_dssp CEEEEEEECCHHHHHHHHHHHHH---TTCCHHHHHHHH-HHHHH-HHHS-T----TCCEEEEEECCCTT---SGGGGSCS
T ss_pred CceEEEEEECHHHHHHHHHHHHh---cCCCHHHHHHHH-HHHHh-hhhc-c----ceeeccceecCCCC---hhhhhCeE
Confidence 34567788999999999999886 458889888886 55554 3431 1 34568999999863 22356778
Q ss_pred cceeeeeeeecCC-cccHHHHHHHHHHHHHHHh
Q 042238 303 NCVGYAVAQTGEK-ETKLQDLVCELRRAKEEFS 334 (459)
Q Consensus 303 N~~~~~~~~~~~~-e~~l~~~A~~iR~ai~~~~ 334 (459)
.++......+... +.++.++...+++.+...-
T Consensus 100 ~~~n~lP~r~~~~~~~t~~~ll~~v~~~~~~~~ 132 (250)
T d1l5aa2 100 LMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSLY 132 (250)
T ss_dssp CCCEEEEEECCCCTTCBHHHHHHHHHHHHHHHH
T ss_pred eEEeeeeEEEEeCCCCCHHHHHHHHHHHHHHhh
Confidence 7776655555554 4789999999998887753
No 7
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=47.26 E-value=6.6 Score=33.62 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=26.4
Q ss_pred EEEEeeecccccchhHHHHHHHHHHHHhc
Q 042238 153 VAIATCASHVLIDGMSLATFINCWAATAR 181 (459)
Q Consensus 153 ~iL~~~~~H~v~Dg~g~~~fl~~wa~~~r 181 (459)
+-|++++.|-+.||.-...|++.|.+..-
T Consensus 207 m~lslt~DHRviDGa~aa~Fl~~l~~~lE 235 (242)
T d1b5sa_ 207 LALSLSFDHRMIDGATAQKALNHIKRLLS 235 (242)
T ss_dssp EEEEEEECTTTSCSHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcchhChHHHHHHHHHHHHHHh
Confidence 55899999999999999999999998764
No 8
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=44.91 E-value=8.4 Score=32.97 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=25.4
Q ss_pred EEeeecccccchhHHHHHHHHHHHHhc
Q 042238 155 IATCASHVLIDGMSLATFINCWAATAR 181 (459)
Q Consensus 155 L~~~~~H~v~Dg~g~~~fl~~wa~~~r 181 (459)
|++++-|-+.||.....|++.|.+..-
T Consensus 210 ltls~DHRvidGa~aa~FL~~l~~~lE 236 (243)
T d1dpba_ 210 LSLSYDCRVINGAAAARFTKRLGDLLA 236 (243)
T ss_dssp EEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEeecccccHHHHHHHHHHHHHHHh
Confidence 899999999999999999999998765
No 9
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=44.51 E-value=8.7 Score=32.65 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=26.7
Q ss_pred EEEEeeecccccchhHHHHHHHHHHHHhc
Q 042238 153 VAIATCASHVLIDGMSLATFINCWAATAR 181 (459)
Q Consensus 153 ~iL~~~~~H~v~Dg~g~~~fl~~wa~~~r 181 (459)
+.|++++-|-+.||.-...|++.|.+..-
T Consensus 196 ~~lsls~DHRviDGa~aa~Fl~~l~~~lE 224 (233)
T d1scza_ 196 MYLALSYDHRLIDGRESVGFLVTIKELLE 224 (233)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEhhcchhccHHHHHHHHHHHHHHh
Confidence 56999999999999999999999998765
No 10
>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.58 E-value=39 Score=30.46 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=30.5
Q ss_pred EEEEEEecCcEEEEeeecccccchhHHHHHHHHHHHHhc
Q 042238 143 VQATFFKCGGVAIATCASHVLIDGMSLATFINCWAATAR 181 (459)
Q Consensus 143 vQvt~~~cGG~iL~~~~~H~v~Dg~g~~~fl~~wa~~~r 181 (459)
+|+..++ +|.+ |+.+-|+.+||..+..++....+...
T Consensus 298 ~q~IV~~-nG~~-g~~~EHS~~DG~~v~~~~~~v~~~~~ 334 (377)
T d1nm8a1 298 LQFIVAE-DGSC-GLVYEHAAAEGPPIVTLLDYVIEYTK 334 (377)
T ss_dssp EEEEEET-TSCE-EEEECTTSCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEC-CCCE-EeeccCCcccHHHHHHHHHHHHHHhh
Confidence 6777788 6665 99999999999999999887766554
Done!