Query 042239
Match_columns 413
No_of_seqs 298 out of 2342
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:16:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 2.2E-50 4.7E-55 378.6 26.7 217 32-262 1-235 (236)
2 PF00139 Lectin_legB: Legume l 100.0 7.1E-49 1.5E-53 368.9 21.7 215 31-260 1-236 (236)
3 cd01951 lectin_L-type legume l 100.0 3.3E-37 7.2E-42 287.5 23.2 188 49-261 14-223 (223)
4 cd07308 lectin_leg-like legume 99.9 4.9E-22 1.1E-26 184.6 22.6 177 49-260 20-216 (218)
5 cd06901 lectin_VIP36_VIPL VIP3 99.8 1E-17 2.2E-22 157.5 22.7 184 49-263 20-224 (248)
6 cd06902 lectin_ERGIC-53_ERGL E 99.8 6.9E-17 1.5E-21 150.0 21.8 180 49-261 22-223 (225)
7 cd06903 lectin_EMP46_EMP47 EMP 99.7 1.3E-14 2.9E-19 133.6 20.0 180 48-260 20-212 (215)
8 PF03388 Lectin_leg-like: Legu 99.6 3.2E-13 7E-18 126.2 23.7 181 49-259 22-225 (229)
9 KOG3839 Lectin VIP36, involved 99.5 5.9E-13 1.3E-17 125.6 13.3 180 49-260 72-273 (351)
10 KOG3838 Mannose lectin ERGIC-5 99.3 4.9E-10 1.1E-14 107.7 19.5 179 50-261 55-254 (497)
11 KOG1187 Serine/threonine prote 99.0 3.3E-10 7.1E-15 113.1 4.0 62 346-413 61-122 (361)
12 cd06900 lectin_VcfQ VcfQ bacte 99.0 8.6E-08 1.9E-12 87.9 19.0 91 63-169 31-126 (255)
13 KOG3653 Transforming growth fa 98.1 6E-06 1.3E-10 82.5 7.2 30 365-396 215-244 (534)
14 KOG0196 Tyrosine kinase, EPH ( 97.9 1.1E-05 2.3E-10 85.1 3.9 61 348-412 608-680 (996)
15 PLN00113 leucine-rich repeat r 97.6 0.00012 2.6E-09 82.4 8.5 43 350-396 683-726 (968)
16 KOG1025 Epidermal growth facto 97.3 0.00042 9E-09 73.9 5.9 47 362-412 698-748 (1177)
17 KOG1094 Discoidin domain recep 97.0 0.0094 2E-07 61.7 12.0 44 365-413 543-586 (807)
18 PLN03224 probable serine/threo 96.9 0.00096 2.1E-08 69.6 4.2 38 358-396 143-197 (507)
19 KOG0193 Serine/threonine prote 96.6 0.0015 3.3E-08 67.5 3.6 43 365-413 397-439 (678)
20 KOG2052 Activin A type IB rece 96.5 0.0041 8.8E-08 62.3 5.7 30 365-396 216-245 (513)
21 KOG0658 Glycogen synthase kina 96.4 0.003 6.5E-08 61.7 3.8 35 362-396 26-60 (364)
22 KOG1026 Nerve growth factor re 96.1 0.0037 8E-08 67.0 3.0 45 365-413 491-540 (774)
23 cd06624 STKc_ASK Catalytic dom 95.8 0.011 2.4E-07 55.7 4.8 41 354-394 2-42 (268)
24 KOG0595 Serine/threonine-prote 95.8 0.0052 1.1E-07 60.9 2.3 35 362-396 12-46 (429)
25 PTZ00284 protein kinase; Provi 95.5 0.012 2.6E-07 60.8 3.8 43 353-395 122-164 (467)
26 PLN03225 Serine/threonine-prot 95.3 0.023 4.9E-07 60.5 5.2 38 358-395 130-171 (566)
27 cd06638 STKc_myosinIIIA Cataly 95.2 0.025 5.5E-07 53.7 4.7 47 349-395 7-53 (286)
28 KOG1095 Protein tyrosine kinas 94.8 0.019 4.1E-07 63.8 3.0 44 365-412 697-745 (1025)
29 cd06639 STKc_myosinIIIB Cataly 94.8 0.03 6.4E-07 53.5 3.9 47 349-395 11-57 (291)
30 cd05108 PTKc_EGFR Catalytic do 94.5 0.026 5.7E-07 54.7 3.0 36 361-396 8-47 (316)
31 cd07879 STKc_p38delta_MAPK13 C 94.2 0.038 8.2E-07 54.4 3.4 35 360-395 15-50 (342)
32 KOG0192 Tyrosine kinase specif 94.2 0.035 7.6E-07 55.6 3.1 45 365-413 46-90 (362)
33 PTZ00283 serine/threonine prot 93.8 0.052 1.1E-06 56.7 3.5 38 358-396 30-68 (496)
34 cd07877 STKc_p38alpha_MAPK14 C 93.7 0.045 9.7E-07 54.0 2.7 47 349-395 6-52 (345)
35 KOG0194 Protein tyrosine kinas 93.5 0.054 1.2E-06 55.8 3.0 46 365-412 162-211 (474)
36 KOG0201 Serine/threonine prote 93.3 0.065 1.4E-06 53.8 3.1 35 362-396 15-49 (467)
37 cd06636 STKc_MAP4K4_6 Catalyti 93.3 0.077 1.7E-06 50.3 3.5 47 350-396 6-52 (282)
38 KOG4236 Serine/threonine prote 93.1 0.062 1.3E-06 55.3 2.6 46 365-413 569-614 (888)
39 cd05596 STKc_ROCK Catalytic do 93.0 0.049 1.1E-06 54.5 1.8 38 358-395 41-78 (370)
40 cd07856 STKc_Sty1_Hog1 Catalyt 93.0 0.1 2.2E-06 51.1 4.0 42 353-395 3-45 (328)
41 cd05104 PTKc_Kit Catalytic dom 92.9 0.074 1.6E-06 53.3 2.9 36 361-396 36-76 (375)
42 PRK09188 serine/threonine prot 92.8 0.13 2.8E-06 51.5 4.4 37 357-394 15-53 (365)
43 PLN00034 mitogen-activated pro 92.7 0.079 1.7E-06 52.4 2.8 33 364-396 78-110 (353)
44 cd05103 PTKc_VEGFR2 Catalytic 92.7 0.074 1.6E-06 52.4 2.6 34 362-396 9-48 (343)
45 cd05102 PTKc_VEGFR3 Catalytic 92.7 0.055 1.2E-06 53.0 1.6 34 362-396 9-48 (338)
46 cd05144 RIO2_C RIO kinase fami 92.5 0.11 2.4E-06 47.0 3.2 32 363-395 18-49 (198)
47 KOG0199 ACK and related non-re 92.5 0.07 1.5E-06 56.6 2.0 43 366-413 116-162 (1039)
48 PTZ00036 glycogen synthase kin 92.5 0.13 2.7E-06 52.9 4.0 38 359-396 65-102 (440)
49 PTZ00263 protein kinase A cata 92.4 0.074 1.6E-06 52.1 2.1 34 362-395 20-53 (329)
50 cd06607 STKc_TAO Catalytic dom 92.1 0.16 3.4E-06 49.0 4.0 36 360-395 15-50 (307)
51 PHA02988 hypothetical protein; 92.0 0.18 3.8E-06 48.3 4.2 44 346-396 11-54 (283)
52 cd05621 STKc_ROCK2 Catalytic d 91.9 0.091 2E-06 52.6 2.1 38 358-395 41-78 (370)
53 cd05105 PTKc_PDGFR_alpha Catal 91.8 0.15 3.3E-06 51.7 3.5 35 362-396 39-78 (400)
54 cd07878 STKc_p38beta_MAPK11 Ca 91.7 0.14 3E-06 50.3 3.0 36 360-395 15-50 (343)
55 cd06656 STKc_PAK3 Catalytic do 91.5 0.22 4.8E-06 47.8 4.2 35 361-396 20-55 (297)
56 cd05107 PTKc_PDGFR_beta Cataly 91.5 0.14 3E-06 52.0 2.9 35 362-396 39-78 (401)
57 cd05106 PTKc_CSF-1R Catalytic 91.3 0.14 3E-06 51.4 2.6 35 361-396 39-79 (374)
58 cd07876 STKc_JNK2 Catalytic do 91.3 0.18 4E-06 49.9 3.5 36 360-395 21-56 (359)
59 cd06657 STKc_PAK4 Catalytic do 91.2 0.2 4.3E-06 48.1 3.6 31 366-396 26-56 (292)
60 cd06635 STKc_TAO1 Catalytic do 91.1 0.21 4.6E-06 48.4 3.6 35 362-396 27-61 (317)
61 cd07875 STKc_JNK1 Catalytic do 91.0 0.22 4.9E-06 49.3 3.8 37 359-395 23-59 (364)
62 cd05109 PTKc_HER2 Catalytic do 91.0 0.17 3.6E-06 47.9 2.8 35 362-396 9-47 (279)
63 cd06644 STKc_STK10_LOK Catalyt 91.0 0.22 4.7E-06 47.5 3.6 32 365-396 17-48 (292)
64 cd06659 STKc_PAK6 Catalytic do 90.8 0.2 4.3E-06 48.2 3.2 31 365-396 26-57 (297)
65 cd05622 STKc_ROCK1 Catalytic d 90.7 0.21 4.6E-06 49.9 3.4 44 352-395 35-78 (371)
66 KOG0663 Protein kinase PITSLRE 90.7 0.19 4E-06 49.2 2.7 36 361-396 77-112 (419)
67 cd07864 STKc_CDK12 Catalytic d 90.7 0.27 5.8E-06 47.0 3.9 37 358-394 5-41 (302)
68 cd06614 STKc_PAK Catalytic dom 90.6 0.26 5.6E-06 46.8 3.7 41 356-396 15-55 (286)
69 cd07874 STKc_JNK3 Catalytic do 90.5 0.23 5E-06 49.0 3.4 37 360-396 17-53 (355)
70 KOG0197 Tyrosine kinases [Sign 90.5 0.16 3.5E-06 51.9 2.3 42 365-413 211-252 (468)
71 KOG0594 Protein kinase PCTAIRE 90.4 0.23 5E-06 48.5 3.1 32 365-396 16-47 (323)
72 cd06647 STKc_PAK_I Catalytic d 90.3 0.3 6.4E-06 46.8 3.9 36 361-396 20-55 (293)
73 KOG0580 Serine/threonine prote 90.3 0.23 5E-06 46.4 2.8 36 361-396 23-58 (281)
74 cd06648 STKc_PAK_II Catalytic 90.3 0.31 6.7E-06 46.4 3.9 35 362-396 21-55 (285)
75 cd06654 STKc_PAK1 Catalytic do 90.2 0.34 7.3E-06 46.5 4.2 35 362-396 22-56 (296)
76 KOG1006 Mitogen-activated prot 90.2 0.076 1.7E-06 50.3 -0.4 32 365-396 69-100 (361)
77 cd06655 STKc_PAK2 Catalytic do 90.1 0.31 6.6E-06 46.9 3.7 35 362-396 21-55 (296)
78 PTZ00426 cAMP-dependent protei 89.8 0.18 4E-06 49.7 2.0 34 362-395 32-66 (340)
79 KOG4257 Focal adhesion tyrosin 89.7 0.23 5E-06 52.2 2.6 44 365-412 394-441 (974)
80 PHA02882 putative serine/threo 89.4 0.33 7.1E-06 46.6 3.4 32 362-393 14-48 (294)
81 PF04478 Mid2: Mid2 like cell 89.4 0.32 6.9E-06 42.0 2.8 33 298-330 47-79 (154)
82 cd07851 STKc_p38 Catalytic dom 89.4 0.32 7E-06 47.8 3.4 38 358-395 13-50 (343)
83 smart00090 RIO RIO-like kinase 89.3 0.48 1E-05 44.5 4.3 31 365-396 33-65 (237)
84 cd05053 PTKc_FGFR Catalytic do 89.3 0.27 5.8E-06 46.8 2.7 36 361-396 13-53 (293)
85 cd06658 STKc_PAK5 Catalytic do 89.2 0.36 7.7E-06 46.3 3.5 31 366-396 28-58 (292)
86 cd07880 STKc_p38gamma_MAPK12 C 89.2 0.36 7.7E-06 47.5 3.5 36 359-395 14-50 (343)
87 cd06618 PKc_MKK7 Catalytic dom 89.0 0.47 1E-05 45.3 4.2 35 362-396 17-51 (296)
88 TIGR01982 UbiB 2-polyprenylphe 88.9 0.39 8.4E-06 49.4 3.7 31 365-396 122-152 (437)
89 cd06646 STKc_MAP4K5 Catalytic 88.9 0.53 1.1E-05 44.0 4.3 34 362-395 11-44 (267)
90 cd06633 STKc_TAO3 Catalytic do 88.8 0.48 1E-05 45.9 4.1 32 365-396 26-57 (313)
91 cd07865 STKc_CDK9 Catalytic do 88.6 0.49 1.1E-05 45.2 4.0 35 361-395 13-47 (310)
92 KOG1035 eIF-2alpha kinase GCN2 88.5 0.13 2.9E-06 57.6 -0.1 36 360-396 479-515 (1351)
93 cd05054 PTKc_VEGFR Catalytic d 88.4 0.24 5.1E-06 48.8 1.7 31 365-396 12-48 (337)
94 KOG4278 Protein tyrosine kinas 88.3 0.24 5.2E-06 52.1 1.6 42 365-412 272-313 (1157)
95 KOG0577 Serine/threonine prote 88.2 0.2 4.4E-06 52.3 1.0 35 362-396 28-62 (948)
96 cd07845 STKc_CDK10 Catalytic d 88.0 0.57 1.2E-05 45.1 4.0 35 360-394 7-41 (309)
97 cd05057 PTKc_EGFR_like Catalyt 87.9 0.45 9.8E-06 44.9 3.2 34 363-396 10-47 (279)
98 KOG0575 Polo-like serine/threo 87.8 0.47 1E-05 49.6 3.4 33 362-395 20-53 (592)
99 cd05110 PTKc_HER4 Catalytic do 87.6 0.44 9.5E-06 45.8 2.9 35 362-396 9-47 (303)
100 cd05055 PTKc_PDGFR Catalytic d 87.4 0.42 9.1E-06 46.0 2.7 37 360-396 35-76 (302)
101 cd06634 STKc_TAO2 Catalytic do 87.3 0.39 8.4E-06 46.4 2.4 34 362-395 17-50 (308)
102 KOG0694 Serine/threonine prote 87.3 0.62 1.3E-05 49.4 3.9 37 360-396 368-404 (694)
103 KOG0600 Cdc2-related protein k 87.2 0.3 6.6E-06 50.0 1.6 34 362-396 119-153 (560)
104 cd05111 PTK_HER3 Pseudokinase 86.9 0.5 1.1E-05 44.8 2.8 34 362-395 9-46 (279)
105 cd07850 STKc_JNK Catalytic dom 86.3 0.67 1.4E-05 45.7 3.5 36 360-395 16-51 (353)
106 PHA03209 serine/threonine kina 86.2 0.78 1.7E-05 45.5 3.9 37 359-395 65-101 (357)
107 KOG0661 MAPK related serine/th 86.1 0.21 4.6E-06 50.8 -0.2 31 365-396 15-46 (538)
108 KOG0591 NIMA (never in mitosis 85.9 0.22 4.9E-06 47.6 -0.1 31 365-396 24-55 (375)
109 PTZ00024 cyclin-dependent prot 85.9 0.84 1.8E-05 44.5 3.9 31 365-395 14-44 (335)
110 KOG0605 NDR and related serine 85.7 0.61 1.3E-05 48.1 2.8 39 358-396 139-177 (550)
111 PF03109 ABC1: ABC1 family; I 85.5 0.24 5.1E-06 41.4 -0.2 31 365-396 16-46 (119)
112 PHA03211 serine/threonine kina 85.4 0.74 1.6E-05 47.7 3.4 34 361-394 170-203 (461)
113 cd07852 STKc_MAPK15 Catalytic 85.1 0.65 1.4E-05 45.4 2.7 35 360-394 7-41 (337)
114 PHA03212 serine/threonine kina 84.9 0.78 1.7E-05 46.3 3.2 36 360-395 92-127 (391)
115 KOG0032 Ca2+/calmodulin-depend 84.6 0.95 2E-05 45.7 3.6 32 365-396 40-71 (382)
116 cd07866 STKc_BUR1 Catalytic do 84.4 0.98 2.1E-05 43.1 3.6 35 360-394 8-42 (311)
117 PRK09605 bifunctional UGMP fam 84.3 2.9 6.2E-05 44.2 7.3 36 351-386 324-359 (535)
118 KOG0198 MEKK and related serin 84.2 0.89 1.9E-05 44.5 3.2 34 362-396 19-53 (313)
119 cd05101 PTKc_FGFR2 Catalytic d 83.8 0.78 1.7E-05 44.0 2.6 33 362-395 17-57 (304)
120 PF15065 NCU-G1: Lysosomal tra 83.4 0.81 1.8E-05 45.4 2.5 27 240-266 284-310 (350)
121 KOG4250 TANK binding protein k 83.2 0.35 7.6E-06 51.4 -0.1 34 362-396 15-49 (732)
122 cd05098 PTKc_FGFR1 Catalytic d 83.0 1.1 2.4E-05 43.1 3.3 34 362-396 20-61 (307)
123 cd05099 PTKc_FGFR4 Catalytic d 82.6 0.94 2E-05 43.7 2.6 34 362-395 14-54 (314)
124 PTZ00266 NIMA-related protein 82.1 1.4 3E-05 49.7 4.0 36 360-395 13-48 (1021)
125 KOG0581 Mitogen-activated prot 81.8 1.4 2.9E-05 43.6 3.3 31 365-395 84-114 (364)
126 KOG0667 Dual-specificity tyros 81.7 1.6 3.5E-05 46.0 4.0 32 365-396 191-222 (586)
127 PTZ00382 Variant-specific surf 81.4 1.2 2.5E-05 35.8 2.3 30 299-328 65-94 (96)
128 PF01102 Glycophorin_A: Glycop 81.4 1.3 2.7E-05 37.2 2.6 11 319-329 83-93 (122)
129 PRK04750 ubiB putative ubiquin 81.3 1.5 3.2E-05 46.3 3.7 34 361-396 121-155 (537)
130 KOG0574 STE20-like serine/thre 80.6 0.29 6.4E-06 47.1 -1.6 35 362-396 35-69 (502)
131 cd06645 STKc_MAP4K3 Catalytic 80.5 0.98 2.1E-05 42.1 1.9 35 361-395 10-44 (267)
132 cd05100 PTKc_FGFR3 Catalytic d 80.0 1.6 3.4E-05 42.7 3.2 31 365-395 17-54 (334)
133 cd05088 PTKc_Tie2 Catalytic do 79.6 1.9 4.1E-05 41.4 3.6 34 362-395 9-44 (303)
134 PF14575 EphA2_TM: Ephrin type 78.2 0.74 1.6E-05 35.1 0.2 17 349-365 56-72 (75)
135 PTZ00267 NIMA-related protein 78.0 2 4.4E-05 44.5 3.5 31 365-395 72-103 (478)
136 KOG1167 Serine/threonine prote 77.5 0.55 1.2E-05 47.0 -0.9 38 359-396 35-75 (418)
137 KOG1163 Casein kinase (serine/ 76.1 2.5 5.5E-05 39.8 3.1 42 353-396 9-51 (341)
138 KOG1024 Receptor-like protein 75.5 0.63 1.4E-05 46.5 -1.1 43 354-396 278-325 (563)
139 KOG0660 Mitogen-activated prot 75.1 2 4.4E-05 42.3 2.3 41 355-395 17-57 (359)
140 KOG0200 Fibroblast/platelet-de 74.0 3 6.4E-05 44.9 3.5 43 366-412 302-351 (609)
141 KOG0598 Ribosomal protein S6 k 71.4 2.2 4.7E-05 42.1 1.5 36 361-396 26-61 (357)
142 KOG1166 Mitotic checkpoint ser 71.4 3 6.4E-05 46.8 2.8 34 361-395 699-732 (974)
143 KOG1989 ARK protein kinase fam 71.3 3.3 7.1E-05 45.1 3.0 31 365-395 42-72 (738)
144 KOG4279 Serine/threonine prote 71.3 3.1 6.7E-05 44.8 2.7 31 365-395 580-610 (1226)
145 KOG0986 G protein-coupled rece 70.8 0.98 2.1E-05 46.0 -1.0 36 360-395 185-220 (591)
146 KOG1027 Serine/threonine prote 69.9 1.3 2.9E-05 48.1 -0.3 33 361-395 510-543 (903)
147 PF15102 TMEM154: TMEM154 prot 67.5 4.3 9.2E-05 34.9 2.3 6 324-329 81-86 (146)
148 KOG1164 Casein kinase (serine/ 67.0 5.8 0.00013 38.8 3.6 35 361-395 19-54 (322)
149 PF06697 DUF1191: Protein of u 66.6 3.5 7.6E-05 39.4 1.8 31 102-135 62-92 (278)
150 KOG2345 Serine/threonine prote 66.5 3 6.6E-05 39.4 1.3 31 365-396 26-57 (302)
151 PHA03390 pk1 serine/threonine- 66.1 5.2 0.00011 37.5 2.9 28 368-395 24-51 (267)
152 KOG0582 Ste20-like serine/thre 65.3 5.5 0.00012 40.6 3.0 31 365-396 31-62 (516)
153 KOG0583 Serine/threonine prote 64.4 7.9 0.00017 38.9 4.0 34 361-395 18-52 (370)
154 KOG0615 Serine/threonine prote 63.7 7.5 0.00016 39.3 3.5 31 365-395 177-207 (475)
155 COG0661 AarF Predicted unusual 62.7 5.2 0.00011 42.0 2.4 31 365-396 130-160 (517)
156 PF05984 Cytomega_UL20A: Cytom 61.5 20 0.00043 27.6 4.7 50 7-61 5-54 (100)
157 KOG0578 p21-activated serine/t 61.2 7.7 0.00017 40.5 3.2 34 362-395 275-308 (550)
158 smart00282 LamG Laminin G doma 61.1 90 0.002 25.7 9.5 25 199-225 57-81 (135)
159 KOG0579 Ste20-like serine/thre 61.0 1.6 3.5E-05 46.3 -1.7 43 366-413 38-80 (1187)
160 PHA03207 serine/threonine kina 60.2 9.1 0.0002 38.4 3.6 34 362-395 94-129 (392)
161 KOG1151 Tousled-like protein k 60.2 1.6 3.5E-05 44.3 -1.7 28 366-393 469-496 (775)
162 KOG0610 Putative serine/threon 60.0 5.3 0.00012 40.3 1.8 31 366-396 83-113 (459)
163 KOG0666 Cyclin C-dependent kin 58.5 2.9 6.3E-05 40.8 -0.3 32 365-396 29-64 (438)
164 PRK10359 lipopolysaccharide co 58.4 11 0.00023 35.4 3.4 36 359-396 30-65 (232)
165 KOG0696 Serine/threonine prote 57.5 9.7 0.00021 38.6 3.1 45 351-396 341-385 (683)
166 KOG4721 Serine/threonine prote 57.0 3.6 7.9E-05 43.2 0.1 29 365-395 129-157 (904)
167 KOG0607 MAP kinase-interacting 55.9 3.4 7.4E-05 40.4 -0.3 40 351-396 74-114 (463)
168 KOG0984 Mitogen-activated prot 54.9 7.8 0.00017 35.8 1.8 34 362-396 48-82 (282)
169 KOG0596 Dual specificity; seri 50.6 4.1 8.8E-05 42.6 -0.7 45 365-413 366-410 (677)
170 cd00110 LamG Laminin G domain; 50.4 1.5E+02 0.0032 24.6 10.0 24 200-225 76-99 (151)
171 PF14531 Kinase-like: Kinase-l 50.2 15 0.00033 35.5 3.2 33 364-396 16-48 (288)
172 PF05454 DAG1: Dystroglycan (D 49.9 5.4 0.00012 38.6 0.0 11 171-181 32-42 (290)
173 PF12877 DUF3827: Domain of un 49.9 23 0.0005 37.7 4.5 16 314-329 283-298 (684)
174 PF08693 SKG6: Transmembrane a 48.9 14 0.0003 24.5 1.8 8 303-310 11-18 (40)
175 PF03302 VSP: Giardia variant- 48.7 15 0.00032 37.4 2.9 33 295-327 362-394 (397)
176 KOG0592 3-phosphoinositide-dep 47.3 9.4 0.0002 39.9 1.2 34 362-395 75-108 (604)
177 KOG1345 Serine/threonine kinas 46.4 16 0.00035 35.1 2.6 58 349-412 11-70 (378)
178 KOG0611 Predicted serine/threo 45.3 9.7 0.00021 38.5 1.0 30 366-396 59-89 (668)
179 PHA03265 envelope glycoprotein 45.2 13 0.00028 36.6 1.7 9 1-9 8-16 (402)
180 PF01299 Lamp: Lysosome-associ 44.9 15 0.00032 35.8 2.2 25 305-329 275-299 (306)
181 PHA03210 serine/threonine kina 44.7 9.1 0.0002 40.0 0.7 24 360-383 148-171 (501)
182 KOG1165 Casein kinase (serine/ 44.5 17 0.00036 36.0 2.4 33 361-394 29-62 (449)
183 PF14991 MLANA: Protein melan- 43.4 5.5 0.00012 32.6 -0.9 15 316-330 38-52 (118)
184 PF02480 Herpes_gE: Alphaherpe 43.1 8 0.00017 39.8 0.0 19 124-142 144-162 (439)
185 PF12273 RCR: Chitin synthesis 42.5 27 0.00058 29.4 3.1 6 323-328 24-29 (130)
186 PF08374 Protocadherin: Protoc 42.2 27 0.00059 32.0 3.2 26 301-326 39-64 (221)
187 PF14610 DUF4448: Protein of u 41.7 17 0.00037 32.7 2.0 13 173-185 49-61 (189)
188 PF09919 DUF2149: Uncharacteri 40.9 1.6E+02 0.0034 23.4 7.0 19 369-390 71-90 (92)
189 PTZ00370 STEVOR; Provisional 40.7 23 0.00049 34.0 2.6 6 240-245 190-195 (296)
190 PF11395 DUF2873: Protein of u 39.9 34 0.00074 22.1 2.5 12 5-16 9-20 (43)
191 PF05545 FixQ: Cbb3-type cytoc 39.1 33 0.00072 23.5 2.7 18 312-329 18-35 (49)
192 KOG0983 Mitogen-activated prot 38.7 39 0.00084 32.7 3.8 31 366-396 98-128 (391)
193 KOG0669 Cyclin T-dependent kin 37.8 1.5 3.3E-05 41.4 -5.5 30 365-394 22-51 (376)
194 PF01102 Glycophorin_A: Glycop 37.2 24 0.00052 29.6 2.0 15 315-329 82-96 (122)
195 KOG0585 Ca2+/calmodulin-depend 37.1 32 0.00069 35.7 3.1 38 358-396 95-133 (576)
196 PF15050 SCIMP: SCIMP protein 37.0 25 0.00055 29.1 2.0 14 315-328 21-34 (133)
197 PF12768 Rax2: Cortical protei 36.1 60 0.0013 31.4 4.8 10 303-312 232-241 (281)
198 KOG4258 Insulin/growth factor 36.0 12 0.00027 40.9 0.1 22 362-383 996-1017(1025)
199 PF10577 UPF0560: Uncharacteri 35.8 41 0.0009 36.9 3.9 11 255-265 236-246 (807)
200 KOG3514 Neurexin III-alpha [Si 35.5 1.8E+02 0.0039 33.2 8.6 121 49-215 804-931 (1591)
201 PF05568 ASFV_J13L: African sw 35.1 34 0.00073 29.3 2.5 12 318-329 47-58 (189)
202 KOG0586 Serine/threonine prote 34.5 35 0.00075 36.2 3.0 38 359-396 55-92 (596)
203 PF06365 CD34_antigen: CD34/Po 33.0 75 0.0016 29.1 4.6 27 301-327 101-127 (202)
204 PF15102 TMEM154: TMEM154 prot 32.8 35 0.00076 29.4 2.3 11 319-329 79-89 (146)
205 KOG1235 Predicted unusual prot 32.0 40 0.00088 35.6 3.1 31 365-396 166-196 (538)
206 PTZ00046 rifin; Provisional 29.5 36 0.00078 33.9 2.1 16 5-22 4-19 (358)
207 PHA03283 envelope glycoprotein 29.4 54 0.0012 34.2 3.3 7 254-260 340-346 (542)
208 KOG0616 cAMP-dependent protein 29.3 42 0.00091 32.7 2.4 31 365-395 49-79 (355)
209 smart00159 PTX Pentraxin / C-r 29.3 71 0.0015 29.0 3.9 26 200-225 86-111 (206)
210 PF05434 Tmemb_9: TMEM9; Inte 28.2 35 0.00076 29.5 1.5 22 3-24 58-80 (149)
211 TIGR01477 RIFIN variant surfac 27.6 40 0.00088 33.4 2.1 16 5-22 4-19 (353)
212 PF04689 S1FA: DNA binding pro 27.3 1.2E+02 0.0026 22.3 3.9 30 298-327 11-40 (69)
213 KOG0612 Rho-associated, coiled 27.3 12 0.00025 42.7 -1.9 42 354-395 69-110 (1317)
214 PF03229 Alpha_GJ: Alphavirus 27.0 1.1E+02 0.0023 25.3 4.0 26 303-328 86-111 (126)
215 PRK01723 3-deoxy-D-manno-octul 26.6 86 0.0019 29.2 4.1 29 365-395 36-65 (239)
216 KOG4645 MAPKKK (MAP kinase kin 25.9 32 0.00069 39.9 1.1 40 355-394 1230-1269(1509)
217 TIGR01478 STEVOR variant surfa 25.4 63 0.0014 31.1 2.8 8 320-327 279-286 (295)
218 PF12191 stn_TNFRSF12A: Tumour 25.3 34 0.00074 28.7 0.9 10 318-327 97-106 (129)
219 PF06483 ChiC: Chitinase C; I 24.8 4.8E+02 0.01 23.4 8.0 97 25-168 31-127 (180)
220 KOG1152 Signal transduction se 24.5 71 0.0015 34.1 3.2 33 363-395 564-596 (772)
221 PRK11901 hypothetical protein; 23.5 97 0.0021 30.4 3.8 49 4-61 41-89 (327)
222 COG2112 Predicted Ser/Thr prot 23.2 85 0.0018 28.5 3.1 31 364-396 26-56 (201)
223 PF15345 TMEM51: Transmembrane 22.9 94 0.002 29.0 3.4 9 388-396 194-202 (233)
224 KOG0576 Mitogen-activated prot 22.3 39 0.00085 36.5 0.9 31 365-395 20-50 (829)
225 KOG4289 Cadherin EGF LAG seven 22.3 6E+02 0.013 30.6 9.8 27 200-228 1394-1420(2531)
226 KOG0664 Nemo-like MAPK-related 22.2 41 0.00089 32.4 1.0 31 364-395 57-88 (449)
227 cd00152 PTX Pentraxins are pla 21.8 1.1E+02 0.0025 27.5 3.8 26 201-226 87-112 (201)
228 KOG0584 Serine/threonine prote 21.7 32 0.0007 36.6 0.2 25 365-389 45-69 (632)
229 PF09224 DUF1961: Domain of un 21.6 2.1E+02 0.0046 26.3 5.3 67 49-133 18-84 (218)
230 KOG3516 Neurexin IV [Signal tr 21.3 5.9E+02 0.013 29.7 9.6 59 154-223 831-889 (1306)
231 smart00560 LamGL LamG-like jel 21.3 1.3E+02 0.0028 25.1 3.8 23 204-226 61-83 (133)
232 KOG0690 Serine/threonine prote 21.1 36 0.00078 33.6 0.4 37 360-396 168-204 (516)
233 PF05399 EVI2A: Ectropic viral 20.7 64 0.0014 29.6 1.8 22 2-23 131-153 (227)
234 KOG0671 LAMMER dual specificit 20.3 33 0.00072 34.4 -0.1 36 360-395 89-124 (415)
235 PF07010 Endomucin: Endomucin; 20.0 1.6E+02 0.0035 27.3 4.2 15 315-329 204-218 (259)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=2.2e-50 Score=378.58 Aligned_cols=217 Identities=39% Similarity=0.639 Sum_probs=191.5
Q ss_pred eeEEcCCCCCCCCcCcccCeEEecceEEeCCCCeEEcCCCCCCcCCCCceEEEEecCceeecCCCCCCccceEEEEEEEE
Q 042239 32 KHVFFPDFSLHNNSKILHDLKLLGSAKLSNEKRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVTKTPTSFETTFSFQF 111 (413)
Q Consensus 32 ~~f~~~~f~~~~~~~~~~~l~l~G~A~~~~~~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~~~~~sF~t~F~f~i 111 (413)
++|+|+.|..+ . ++|+|+|+|.+.+ ++.|+||++.. ..+++|||||++||+||++.+++++||+|+|+|+|
T Consensus 1 ~~f~f~~f~~~-~----~~l~l~G~A~~~~-~~~i~LT~~~~---~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~i 71 (236)
T cd06899 1 LSFNFNGFSSD-Q----SNLTLQGDATISS-NGALQLTNDTS---PASSVGRALYSKPVRLWDSTTGKVASFSTSFSFSI 71 (236)
T ss_pred CceecCCCCCC-C----CCEEEecceEcCC-CCeEEecCCCC---CCcceEEEEeCCCEEeecCCCCCceeEEEEEEEEE
Confidence 47999999862 2 7999999999985 78999999872 12899999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCcEEEEEecCCCCC-CCCCCccccccCCCC--CCCceEEEEeeecccCccCCCCCCceeEecCCCcc
Q 042239 112 NTSNNTRTSRDGGSSLTFIIVPDEFTV-GRAGPWLGVLNDACK--DDYKAVAVKFDTCRDLEFGGPNDNHVGINLGSIVS 188 (413)
Q Consensus 112 ~~~~~~~~~~~~gdGlaF~l~~~~~~~-~~~g~~lGl~~~~~~--g~~~~vAVEfDT~~n~~~~dp~~~Hvgi~~ns~~s 188 (413)
.... ...+||||||+|+|+.... +..|++|||++..+. +.++.||||||||+|.+++||+.+||||++|++.|
T Consensus 72 ~~~~----~~~~gdGlAF~i~~~~~~~~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~S 147 (236)
T cd06899 72 TPPN----PSLGGDGLAFFLAPTDSLPPASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLVS 147 (236)
T ss_pred EcCC----CCCCCCeEEEEEecCCCCCCCCCcceeeeecCCCCCCcccceEEEEeecccCcccCCCCCCeEEEEcCCccc
Confidence 9765 5678999999999988544 688999999987765 46899999999999998889999999999999998
Q ss_pred cccccCCCCccccCCCCeEEEEEEEeCCCcEEEEEEEecCCCCCCCCCeee---------------eeeeecCCccceEe
Q 042239 189 TRAINASDVGIFLNDGSVHRAWIAYDGTRGWMDVRIGSDGRDYPSTKPTFS---------------GFSASTGNMTQIHN 253 (413)
Q Consensus 189 ~~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~~l~---------------GFsasTG~~~~~h~ 253 (413)
..+..+....++|.+|+.++|||+||+.+++|+|+|+ .....+|..++|+ |||||||...|.|+
T Consensus 148 ~~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~-~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG~~~~~h~ 226 (236)
T cd06899 148 VKAGYWDDDGGKLKSGKPMQAWIDYDSSSKRLSVTLA-YSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHY 226 (236)
T ss_pred ceeeccccccccccCCCeEEEEEEEcCCCCEEEEEEE-eCCCCCCcCCEEEEeccHHHhCCCceEEEEEeEcCCCcceEE
Confidence 8888777656678999999999999999999999999 4432577788876 99999999999999
Q ss_pred EEeeEEeeC
Q 042239 254 LLSWNFSSI 262 (413)
Q Consensus 254 I~sWsf~~~ 262 (413)
|++|+|+++
T Consensus 227 i~sWsF~s~ 235 (236)
T cd06899 227 ILSWSFSSN 235 (236)
T ss_pred EEEEEEEcC
Confidence 999999985
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=7.1e-49 Score=368.90 Aligned_cols=215 Identities=39% Similarity=0.692 Sum_probs=184.5
Q ss_pred ceeEEcCCCCCCCCcCcccCeEEecceEEeCCCCeEEcCCCCCCcCCCCceEEEEecCceeecCCCCCCccceEEEEEEE
Q 042239 31 RKHVFFPDFSLHNNSKILHDLKLLGSAKLSNEKRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVTKTPTSFETTFSFQ 110 (413)
Q Consensus 31 ~~~f~~~~f~~~~~~~~~~~l~l~G~A~~~~~~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~~~~~sF~t~F~f~ 110 (413)
+++|+|+.|.. . .+|+|+|+|.+.. +++|+||++.. .+++|||||++||+|||..++++++|+|+|+|+
T Consensus 1 ~~~F~~~~F~~--~----~~~~l~G~A~~~~-~~~l~LT~~~~----~~~~G~~~y~~pi~l~d~~~~~~~sF~t~F~f~ 69 (236)
T PF00139_consen 1 SVSFSFPSFSN--S----SNLTLNGDASISS-NGSLQLTPDST----NNQAGRAWYNNPIQLWDSTTGNVASFSTSFSFS 69 (236)
T ss_dssp EEEEEESSBTT--G----TTEEEEETEEEET-TSEEESSTBET----SSEEEEEEESSEEESBETTTTEBEEEEEEEEEE
T ss_pred CceEEcCCCCC--C----CceEEEeeEEecc-CCeEEcCCCCC----CCcEEEEEECCcEEEeCCCCcceeeeeeEEEEE
Confidence 36899999933 2 7999999999943 89999998754 289999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCcEEEEEecCCCCC-CCCCCccccccCCCCC--CCceEEEEeeecccCccCCCCCCceeEecCCCc
Q 042239 111 FNTSNNTRTSRDGGSSLTFIIVPDEFTV-GRAGPWLGVLNDACKD--DYKAVAVKFDTCRDLEFGGPNDNHVGINLGSIV 187 (413)
Q Consensus 111 i~~~~~~~~~~~~gdGlaF~l~~~~~~~-~~~g~~lGl~~~~~~g--~~~~vAVEfDT~~n~~~~dp~~~Hvgi~~ns~~ 187 (413)
|.... .+...+||||||+|+|+.... +..|++|||.+..+++ ++++||||||||+|.+++||+.+||||++|++.
T Consensus 70 i~~~~--~~~~~~~dGlAFvi~~~~~~~~~~~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~~d~~~nHIgI~~n~~~ 147 (236)
T PF00139_consen 70 ITNGP--GSSNNGGDGLAFVIQPDPNLPGGSSGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEYNDPDDNHIGIDVNSVV 147 (236)
T ss_dssp EEESS--SSSSS-BEEEEEEEEETTSSTTTSSGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGGTTTSSSEEEEEESSSS
T ss_pred EeccC--CCCccCCCceEEEEecCcccccCCCCCccCccccccCCCccCcEEEEEEeeeecccccccCCCEEEEECCCCc
Confidence 96431 016778999999999999443 5689999999877655 699999999999999899999999999999999
Q ss_pred ccccccCC---CCccccCCCCeEEEEEEEeCCCcEEEEEEEecCCCCCCCCCeee---------------eeeeecCCcc
Q 042239 188 STRAINAS---DVGIFLNDGSVHRAWIAYDGTRGWMDVRIGSDGRDYPSTKPTFS---------------GFSASTGNMT 249 (413)
Q Consensus 188 s~~~~~~~---~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~~l~---------------GFsasTG~~~ 249 (413)
+..+.++. ....+|.+|+.|+|||+||+.+++|+|+|+ ... .+|..++|+ |||||||..+
T Consensus 148 s~~~~~~~~~~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~-~~~-~~~~~~~l~~~vdL~~~l~~~v~vGFsasTG~~~ 225 (236)
T PF00139_consen 148 SNKTASAGYYSSPSFSLSDGKWHTVWIDYDASTKRLSVYLD-DNS-SKPSSPVLSVNVDLSAVLPEQVYVGFSASTGGSY 225 (236)
T ss_dssp ESEEEE----EEEEHHHGTTSEEEEEEEEETTTTEEEEEEE-ETT-TTSEEEEEEEE--HHHHSCSEEEEEEEEEESSSS
T ss_pred ccccccccccccccccccCCcEEEEEEEEcCCccEEEEEEe-ccc-CCCcceeEEEEEchHHhcCCCcEEEEEeecCCCc
Confidence 88876554 235688999999999999999999999999 443 577777776 9999999999
Q ss_pred ceEeEEeeEEe
Q 042239 250 QIHNLLSWNFS 260 (413)
Q Consensus 250 ~~h~I~sWsf~ 260 (413)
|.|+|++|+|+
T Consensus 226 ~~h~I~sW~F~ 236 (236)
T PF00139_consen 226 QTHDILSWSFS 236 (236)
T ss_dssp EEEEEEEEEEE
T ss_pred ceEEEEEEEeC
Confidence 99999999996
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=100.00 E-value=3.3e-37 Score=287.55 Aligned_cols=188 Identities=32% Similarity=0.550 Sum_probs=152.3
Q ss_pred cCeEEecceEEeCCCCeEEcCCCCCCcCCCCceEEEEecCceeecCCCCCCccceEEEEEEEEecCCCCCCCCCCCCcEE
Q 042239 49 HDLKLLGSAKLSNEKRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVTKTPTSFETTFSFQFNTSNNTRTSRDGGSSLT 128 (413)
Q Consensus 49 ~~l~l~G~A~~~~~~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~~~~~sF~t~F~f~i~~~~~~~~~~~~gdGla 128 (413)
.++.++|+|.+.++++.|+||++.. +++|++||++||++| ++|+|+|+|+|... ...+|||||
T Consensus 14 ~~~~~~G~A~~~~~~~~l~Lt~~~~-----~~~G~~~~~~~i~~~-------~~F~~~F~f~i~~~-----~~~~gdG~a 76 (223)
T cd01951 14 SNWQLNGSATLTTDSGVLRLTPDTG-----NQAGSAWYKTPIDLS-------KDFTTTFKFYLGTK-----GTNGADGIA 76 (223)
T ss_pred hhcEEcccEEecCCCCEEEECCCCC-----CcEEEEEECCcEecc-------CCEEEEEEEEEeCC-----CCCCCCcEE
Confidence 6899999999984468999999875 899999999999998 48999999999975 256799999
Q ss_pred EEEecCCCCC-CCCC--CccccccCCCCCCCceEEEEeeecccCccCCCCCCceeEecCCCcccc--cccCCCCccc--c
Q 042239 129 FIIVPDEFTV-GRAG--PWLGVLNDACKDDYKAVAVKFDTCRDLEFGGPNDNHVGINLGSIVSTR--AINASDVGIF--L 201 (413)
Q Consensus 129 F~l~~~~~~~-~~~g--~~lGl~~~~~~g~~~~vAVEfDT~~n~~~~dp~~~Hvgi~~ns~~s~~--~~~~~~~~~~--l 201 (413)
|+|+|++... +..| ++||+ .+.++.+|||||||+|.+++||+.+||||++|+..+.. ..+......+ .
T Consensus 77 F~l~~~~~~~~~~~g~~~~lG~-----~~~~~~~aVefDT~~N~~~~dp~~~higi~~n~~~~~~~~~~~~~~~~~~~~~ 151 (223)
T cd01951 77 FVLQNDPAGALGGGGGGGGLGY-----GGIGNSVAVEFDTYKNDDNNDPNGNHISIDVNGNGNNTALATSLGSASLPNGT 151 (223)
T ss_pred EEEecCCCCccccCCCCCccCc-----cccCCeEEEEEeccccCCCCCCCCCEEEEEcCCCCCCcccccccceeeCCCcc
Confidence 9999987543 3444 88898 67789999999999998878999999999999987541 1111111112 2
Q ss_pred CCCCeEEEEEEEeCCCcEEEEEEEecCCCCCCCCCeee---------------eeeeecCCccceEeEEeeEEee
Q 042239 202 NDGSVHRAWIAYDGTRGWMDVRIGSDGRDYPSTKPTFS---------------GFSASTGNMTQIHNLLSWNFSS 261 (413)
Q Consensus 202 ~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~~l~---------------GFsasTG~~~~~h~I~sWsf~~ 261 (413)
.+|+.++|||+|++.+++|+|+|+ ... .+..++++ |||||||..+|.|+|++|+|++
T Consensus 152 ~~g~~~~v~I~Y~~~~~~L~v~l~-~~~--~~~~~~l~~~~~l~~~~~~~~yvGFTAsTG~~~~~h~V~~wsf~~ 223 (223)
T cd01951 152 GLGNEHTVRITYDPTTNTLTVYLD-NGS--TLTSLDITIPVDLIQLGPTKAYFGFTASTGGLTNLHDILNWSFTS 223 (223)
T ss_pred CCCCEEEEEEEEeCCCCEEEEEEC-CCC--ccccccEEEeeeecccCCCcEEEEEEcccCCCcceeEEEEEEecC
Confidence 238999999999999999999998 433 13444443 9999999999999999999963
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.90 E-value=4.9e-22 Score=184.65 Aligned_cols=177 Identities=24% Similarity=0.357 Sum_probs=130.6
Q ss_pred cCeEEecceEEeCCCCeEEcCCCCCCcCCCCceEEEEecCceeecCCCCCCccceEEEEEEEEecCCCCCCCCCCCCcEE
Q 042239 49 HDLKLLGSAKLSNEKRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVTKTPTSFETTFSFQFNTSNNTRTSRDGGSSLT 128 (413)
Q Consensus 49 ~~l~l~G~A~~~~~~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~~~~~sF~t~F~f~i~~~~~~~~~~~~gdGla 128 (413)
.++.+.|+|.+. ++.|+||++.. ++.|++||+.|+++. +|+++|+|+|... ...+|||||
T Consensus 20 ~~w~~~G~a~~~--~~~i~LT~~~~-----~~~G~~~~~~pi~~~--------~F~~~f~F~i~~~-----~~~~gdG~a 79 (218)
T cd07308 20 GNWTVGGSTVIT--KNYIRLTPDVP-----SQSGSLWSRVPIPAK--------DFEIEVEFSIHGG-----SGLGGDGFA 79 (218)
T ss_pred CCeEEcCCeEEe--CCEEEeCCCCC-----CCEeEEEeCCCccCC--------CEEEEEEEEEeCC-----CCCCCCEEE
Confidence 789999999998 89999999865 899999999999984 6999999999875 356799999
Q ss_pred EEEecCCCCCCCCCCccccccCCCCCCCceEEEEeeecccCccCCCCCCceeEecCC-Ccccc------cccCCCCcccc
Q 042239 129 FIIVPDEFTVGRAGPWLGVLNDACKDDYKAVAVKFDTCRDLEFGGPNDNHVGINLGS-IVSTR------AINASDVGIFL 201 (413)
Q Consensus 129 F~l~~~~~~~~~~g~~lGl~~~~~~g~~~~vAVEfDT~~n~~~~dp~~~Hvgi~~ns-~~s~~------~~~~~~~~~~l 201 (413)
|+|+++... .|..+|. .+..+-+||||||++|. +-...+|.+.+|- ..+.. ........++.
T Consensus 80 f~~~~~~~~---~g~~~G~-----~~~~~Glai~fdt~~n~---~~~~p~i~~~~Ndg~~~~~~~~d~~~~~~~~c~~~~ 148 (218)
T cd07308 80 FWYTEEPGS---DGPLFGG-----PDKFKGLAIFFDTYDND---GKGFPSISVFLNDGTKSYDYETDGEKLELASCSLKF 148 (218)
T ss_pred EEEECCCCC---CCccccc-----CCCCCEEEEEEEcCCCC---CCCCCeEEEEEeCCCceecccCCCccccccceeEec
Confidence 999997643 4456665 34567899999999985 3334456665442 11211 11222222333
Q ss_pred CC-CCeEEEEEEEeCCCcEEEEEEEecCCCCCCCCCeee------------eeeeecCCccceEeEEeeEEe
Q 042239 202 ND-GSVHRAWIAYDGTRGWMDVRIGSDGRDYPSTKPTFS------------GFSASTGNMTQIHNLLSWNFS 260 (413)
Q Consensus 202 ~~-g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~~l~------------GFsasTG~~~~~h~I~sWsf~ 260 (413)
.+ +...+++|.|+ .+.|.|.+. ... ......|+. ||||+||...+.|+|++|.+.
T Consensus 149 ~~~~~~~~~~I~y~--~~~l~v~i~-~~~-~~~~~~c~~~~~~~l~~~~y~G~sA~tg~~~d~~dIls~~~~ 216 (218)
T cd07308 149 RNSNAPTTLRISYL--NNTLKVDIT-YSE-GNNWKECFTVEDVILPSQGYFGFSAQTGDLSDNHDILSVHTY 216 (218)
T ss_pred ccCCCCeEEEEEEE--CCEEEEEEe-CCC-CCCccEEEEcCCcccCCCCEEEEEeccCCCcCcEEEEEEEee
Confidence 33 57899999999 588999997 322 122333332 999999999999999999874
No 5
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=99.80 E-value=1e-17 Score=157.47 Aligned_cols=184 Identities=20% Similarity=0.276 Sum_probs=125.9
Q ss_pred cCeEEecceEEeCCCCeEEcCCCCCCcCCCCceEEEEecCceeecCCCCCCccceEEEEEEEEecCCCCCCCCCCCCcEE
Q 042239 49 HDLKLLGSAKLSNEKRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVTKTPTSFETTFSFQFNTSNNTRTSRDGGSSLT 128 (413)
Q Consensus 49 ~~l~l~G~A~~~~~~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~~~~~sF~t~F~f~i~~~~~~~~~~~~gdGla 128 (413)
.++.+.|+|.+. .+.|+||++.. ++.|++||+.|+++. +|+++|+|+|+..+ ...+|||||
T Consensus 20 ~~w~~~G~a~v~--~~~IrLTp~~~-----~~~G~~w~~~p~~~~--------~F~~~f~F~I~~~~----~~~~GdGlA 80 (248)
T cd06901 20 PLWDFLGSTMVT--SQYIRLTPDHQ-----SKQGSIWNRVPCYLR--------DWEMHVHFKVHGSG----KNLFGDGFA 80 (248)
T ss_pred CCEEEcceEEEc--CCeEEECCCCC-----CCEEEEeccCCccCC--------CEEEEEEEEEeCCC----CCCCCCEEE
Confidence 789999999998 78999999865 689999999999984 69999999999865 567899999
Q ss_pred EEEecCCCCCCCCCCccccccCCCCCCCceEEEEeeecccCcc-CCCCCCceeEecC-CCccc------ccccCCCCccc
Q 042239 129 FIIVPDEFTVGRAGPWLGVLNDACKDDYKAVAVKFDTCRDLEF-GGPNDNHVGINLG-SIVST------RAINASDVGIF 200 (413)
Q Consensus 129 F~l~~~~~~~~~~g~~lGl~~~~~~g~~~~vAVEfDT~~n~~~-~dp~~~Hvgi~~n-s~~s~------~~~~~~~~~~~ 200 (413)
|+++.+.... |..+|. ...-.=+||-|||+.|..- .....+-|.+.+| +...- ....+......
T Consensus 81 fw~t~~~~~~---G~~fG~-----~~~f~Gl~I~~Dt~~n~~~~~~~~~P~i~~~~NDGt~~yd~~~Dg~~~~~~~C~~~ 152 (248)
T cd06901 81 IWYTKERMQP---GPVFGS-----KDNFHGLAIFFDTYSNQNGEHEHVHPYISAMVNNGSLSYDHDRDGTHTELAGCSAP 152 (248)
T ss_pred EEEEcCCCcc---Cccccc-----CCCCceEEEEEECCCCCCCcccCCCceEEEEEcCCCeeecccCCCchhhcCceeee
Confidence 9999876432 333443 1122347999999998531 0112233433333 22111 11112222223
Q ss_pred cC-CCCeEEEEEEEeCCCcEEEEEEEecCCCCCCCCCeee------------eeeeecCCccceEeEEeeEEeeCC
Q 042239 201 LN-DGSVHRAWIAYDGTRGWMDVRIGSDGRDYPSTKPTFS------------GFSASTGNMTQIHNLLSWNFSSIS 263 (413)
Q Consensus 201 l~-~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~~l~------------GFsasTG~~~~~h~I~sWsf~~~~ 263 (413)
++ .+.+..++|.|.. ..|.|.++ .+. ......|+. ||||+||...+.|+|++-.+..-.
T Consensus 153 ~rn~~~~t~~rI~Y~~--~~l~v~vd-~~~-~~~w~~Cf~~~~v~LP~~~yfGiSA~Tg~~sd~hdIlsv~~~~l~ 224 (248)
T cd06901 153 FRNKDHDTFVAIRYSK--GRLTVMTD-IDG-KNEWKECFDVTGVRLPTGYYFGASAATGDLSDNHDIISMKLYELD 224 (248)
T ss_pred ccCCCCCeEEEEEEEC--CeEEEEEe-cCC-CCceeeeEEeCCeecCCCCEEEEEecCCCCCCcEEEEEEEEecCc
Confidence 33 3345689999986 56888887 443 223445554 999999999999999998876543
No 6
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=99.77 E-value=6.9e-17 Score=149.97 Aligned_cols=180 Identities=19% Similarity=0.220 Sum_probs=127.4
Q ss_pred cCeEEecceEEeCCCCeEEcCCCCCCcCCCCceEEEEecCceeecCCCCCCccceEEEEEEEEecCCCCCCCCCCCCcEE
Q 042239 49 HDLKLLGSAKLSNEKRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVTKTPTSFETTFSFQFNTSNNTRTSRDGGSSLT 128 (413)
Q Consensus 49 ~~l~l~G~A~~~~~~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~~~~~sF~t~F~f~i~~~~~~~~~~~~gdGla 128 (413)
..+.+.|+|.+. ++.|+||++.. ++.|.+|.+.|++.. +|+.+|+|+|+... ..+|||||
T Consensus 22 ~~W~~~G~t~~~--~~~IrLTp~~~-----~~~G~iw~~~~~~~~--------~w~ie~~Fri~g~~-----~~~gdG~a 81 (225)
T cd06902 22 PFWSHGGDAIAS--LEQVRLTPSLR-----SKKGSVWTKNPFSFE--------NWEVEVTFRVTGRG-----RIGADGLA 81 (225)
T ss_pred CceEecccEEec--CCEEEECCCCC-----CCEEEEeeCCCcCCC--------CEEEEEEEEEecCC-----CCCCCEEE
Confidence 789999999997 89999999865 899999999999843 69999999999763 35789999
Q ss_pred EEEecCCCCCCCCCCccccccCCCCCCCceEEEEeeecccCccCCCCCCceeEecCC-Ccccc------cccCCCCcccc
Q 042239 129 FIIVPDEFTVGRAGPWLGVLNDACKDDYKAVAVKFDTCRDLEFGGPNDNHVGINLGS-IVSTR------AINASDVGIFL 201 (413)
Q Consensus 129 F~l~~~~~~~~~~g~~lGl~~~~~~g~~~~vAVEfDT~~n~~~~dp~~~Hvgi~~ns-~~s~~------~~~~~~~~~~l 201 (413)
|+++.+... .|..+|. ...-.-+||.|||+.|.+ ......|.+..|- ..... ...++......
T Consensus 82 ~W~t~~~~~---~G~~~G~-----~~~f~Gl~I~~Dt~~n~~--~~~~p~i~~~~NDGt~~yd~~~D~~~~~~~~C~~~~ 151 (225)
T cd06902 82 IWYTKERGE---EGPVFGS-----SDKWNGVGIFFDSFDNDG--KKNNPAILVVGNDGTKSYDHQNDGLTQALGSCLRDF 151 (225)
T ss_pred EEEECCCCC---CCCccCC-----CCcccEEEEEEECCCCCC--CCCCcEEEEEECCCCeeccccCCCcccccceEEEec
Confidence 999987632 4455665 223445799999998852 2334567555432 21111 11112222333
Q ss_pred CC-CCeEEEEEEEeCCCcEEEEEEEecCC--CCCCCCCeee------------eeeeecCCccceEeEEeeEEee
Q 042239 202 ND-GSVHRAWIAYDGTRGWMDVRIGSDGR--DYPSTKPTFS------------GFSASTGNMTQIHNLLSWNFSS 261 (413)
Q Consensus 202 ~~-g~~~~v~I~Y~~~~~~L~V~l~~~~~--~~~~~~~~l~------------GFsasTG~~~~~h~I~sWsf~~ 261 (413)
++ ..+.+++|.|.. +.|+|.++ ... .....+.|+. ||||+||+..+.|+|++|.+.+
T Consensus 152 rn~~~p~~~rI~Y~~--~~l~V~~d-~~~~~~~~~~~~Cf~~~~v~LP~~~yfGiSA~Tg~l~d~hDIls~~~~s 223 (225)
T cd06902 152 RNKPYPVRAKITYYQ--NVLTVSIN-NGFTPNKDDYELCTRVENMVLPPNGYFGVSAATGGLADDHDVLSFLTFS 223 (225)
T ss_pred cCCCCCeEEEEEEEC--CeEEEEEe-CCcCCCCCcccEEEecCCeeCCCCCEEEEEecCCCCCCcEeEEEEEEec
Confidence 33 457899999988 67999987 321 0122334443 9999999999999999999864
No 7
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=99.65 E-value=1.3e-14 Score=133.58 Aligned_cols=180 Identities=14% Similarity=0.195 Sum_probs=120.4
Q ss_pred ccCeEEecceEEeCCCCeEEcCCCCCCcCCCCceEEEEecCceeecCCCCCCccceEEEEEEEEecCCCCCCCCCCCCcE
Q 042239 48 LHDLKLLGSAKLSNEKRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVTKTPTSFETTFSFQFNTSNNTRTSRDGGSSL 127 (413)
Q Consensus 48 ~~~l~l~G~A~~~~~~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~~~~~sF~t~F~f~i~~~~~~~~~~~~gdGl 127 (413)
..++.+.|+|.+. ++.|+||++ + ++.|.+|.+.|+++.+ +|+.+|+|+|+... ..+||||
T Consensus 20 i~~W~~~G~t~v~--~~~IrLTp~-~-----s~~G~iWs~~pl~~~~-------~w~ie~~Fri~G~~-----~~~gdGl 79 (215)
T cd06903 20 IPNWQTSGNPKLE--SGRIILTPP-G-----NQRGSLWLKKPLSLKD-------EWTIEWTFRSTGPE-----GRSGGGL 79 (215)
T ss_pred CCCeEEcCcEEee--CCeEEECCC-C-----CceEeEeeCCcCCCCC-------CEEEEEEEEecccC-----CcCCCEE
Confidence 3789999999998 889999999 6 8999999999999873 59999999998763 3689999
Q ss_pred EEEEecCCCCCCCCCCccccccCCCCCCCceEEEEeeecccCccCCCCCCceeEec-CCCccccc-----ccCCCCcccc
Q 042239 128 TFIIVPDEFTVGRAGPWLGVLNDACKDDYKAVAVKFDTCRDLEFGGPNDNHVGINL-GSIVSTRA-----INASDVGIFL 201 (413)
Q Consensus 128 aF~l~~~~~~~~~~g~~lGl~~~~~~g~~~~vAVEfDT~~n~~~~dp~~~Hvgi~~-ns~~s~~~-----~~~~~~~~~l 201 (413)
||+++.+....+. -..+|- ...-.=+||.|||+.|. .| .|.+.+ ++...... ..++...+..
T Consensus 80 a~W~t~~~~~~~g-~~~fG~-----~~~f~Gl~I~~Dt~~n~---~p---~i~~~~NDGt~~yd~~~d~~~~~g~C~~~~ 147 (215)
T cd06903 80 NFWLVKDGNADVG-TSSIYG-----PSKFDGLQLLIDNNGGS---GG---SLRGFLNDGSKDYKNEDVDSLAFGSCLFAY 147 (215)
T ss_pred EEEEECCCcccCC-ccccCC-----CCCCcEEEEEEECCCCC---Cc---eEEEEECCCCeeccccCCcccccceeeEec
Confidence 9999987632110 011121 01112259999999873 22 233332 23222111 1122222332
Q ss_pred -CCCCeEEEEEEEeCCCcEEEEEEEecCC---CCCCCCC---eeeeeeeecCCccceEeEEeeEEe
Q 042239 202 -NDGSVHRAWIAYDGTRGWMDVRIGSDGR---DYPSTKP---TFSGFSASTGNMTQIHNLLSWNFS 260 (413)
Q Consensus 202 -~~g~~~~v~I~Y~~~~~~L~V~l~~~~~---~~~~~~~---~l~GFsasTG~~~~~h~I~sWsf~ 260 (413)
+.+.+.+++|.|....+.|+|.++. .. ..+..-| ..-||||+||+..+.|+|++..+.
T Consensus 148 rn~~~p~~iri~Y~~~~~~l~v~vd~-~~Cf~~~~v~lP~~~y~fGiSAaTg~~~d~hdIl~~~~~ 212 (215)
T cd06903 148 QDSGVPSTIRLSYDALNSLFKVQVDN-RLCFQTDKVQLPQGGYRFGITAANADNPESFEILKLKVW 212 (215)
T ss_pred cCCCCCEEEEEEEECCCCEEEEEECC-CEEEecCCeecCCCCCEEEEEEcCCCCCCcEEEEEEEEe
Confidence 3455799999998877899998872 21 0011111 111999999999999999987664
No 8
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=99.60 E-value=3.2e-13 Score=126.18 Aligned_cols=181 Identities=22% Similarity=0.327 Sum_probs=116.9
Q ss_pred cCeEEecceEEeCCCCeEEcCCCCCCcCCCCceEEEEecCceeecCCCCCCccceEEEEEEEEecCCCCCCCCCCCCcEE
Q 042239 49 HDLKLLGSAKLSNEKRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVTKTPTSFETTFSFQFNTSNNTRTSRDGGSSLT 128 (413)
Q Consensus 49 ~~l~l~G~A~~~~~~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~~~~~sF~t~F~f~i~~~~~~~~~~~~gdGla 128 (413)
..+.+.|+|.+. ++.|+||++.. ++.|.+|.+.|++.. .|+.+|+|+|+... ....|||||
T Consensus 22 ~~W~~~G~t~i~--~~~IrLTp~~~-----~~~G~iws~~~~~~~--------~w~i~~~Fri~g~~----~~~~g~G~a 82 (229)
T PF03388_consen 22 PNWDIGGSTVIT--DNFIRLTPDRQ-----SQSGSIWSRKPIPFD--------NWEIEFTFRISGQE----KGLGGDGMA 82 (229)
T ss_dssp TTEEEEET-EEE--SSEEEEE-SST-----TEEEEEEESS-BEES--------EEEEEEEEEEESS-----SSS-S-EEE
T ss_pred CCEEECCeEEec--CCEEEECCCcc-----cCEEEEEEcCCCCcc--------CEEEEEEEEEeccc----cCcCCCeEE
Confidence 589999999999 89999999976 899999999999984 69999999999874 456899999
Q ss_pred EEEecCCCCCCCCCCccccccCCCCCCCceEEEEeeecccCccC-CCCCCceeEecCC-Cccccc------ccCCCCccc
Q 042239 129 FIIVPDEFTVGRAGPWLGVLNDACKDDYKAVAVKFDTCRDLEFG-GPNDNHVGINLGS-IVSTRA------INASDVGIF 200 (413)
Q Consensus 129 F~l~~~~~~~~~~g~~lGl~~~~~~g~~~~vAVEfDT~~n~~~~-dp~~~Hvgi~~ns-~~s~~~------~~~~~~~~~ 200 (413)
|+++.+... .|..+|. ...-.=++|-||||.|.+-. .-....|.+.+|- ...... ..++...++
T Consensus 83 ~W~t~~~~~---~G~~fG~-----~~~f~Gl~i~idt~~N~~~~~~~~~p~i~~~~NDGt~~~~~~~dg~~~~~~~C~~~ 154 (229)
T PF03388_consen 83 FWYTKDPGS---DGPVFGG-----PDKFDGLGIFIDTYDNDEGGHKRGFPYISAMLNDGTKSYDHDNDGKDQSLGSCSAD 154 (229)
T ss_dssp EEEESSSSS---SCSBTTB------SS-EEEEEEEEES-TTCTTCTSTSSEEEEEEEESSS---GGGTTTTT-SEEEE--
T ss_pred EEEEcCccc---cccccCC-----CcccceEEEEEEcccCCCcccccccceEEEEecCCCccccccccCcccccccceec
Confidence 999987644 3444443 11223369999999986311 1123445554432 111111 111112233
Q ss_pred cCC-CCeEEEEEEEeCCCcEEEEEEEecC--CCCCCCCCeee------------eeeeecCCccceEeEEeeEE
Q 042239 201 LND-GSVHRAWIAYDGTRGWMDVRIGSDG--RDYPSTKPTFS------------GFSASTGNMTQIHNLLSWNF 259 (413)
Q Consensus 201 l~~-g~~~~v~I~Y~~~~~~L~V~l~~~~--~~~~~~~~~l~------------GFsasTG~~~~~h~I~sWsf 259 (413)
+++ ....+++|.|.. +.|.|.++ .. ........|+. ||||+||...+.|+|++-..
T Consensus 155 ~rn~~~p~~~ri~Y~~--~~l~v~id-~~~~~~~~~~~~Cf~~~~v~LP~~~yfGvSA~Tg~~~d~hdi~s~~~ 225 (229)
T PF03388_consen 155 YRNSDVPTRIRISYSK--NTLTVSID-SNYLKNQDDWELCFTTDGVDLPEGYYFGVSAATGELSDNHDILSVKT 225 (229)
T ss_dssp -BTESSEEEEEEEEET--TEEEEEEE-TSCCSECCTTEEEEEESTEEGGSSBEEEEEEEESSSGGEEEEEEEEE
T ss_pred cCcCCCCEEEEEEEEC--CeEEEEEe-cccccCCcCCcEEEEcCCeecCCCCEEEEEecCCCCCCcEEEEEEEE
Confidence 333 456799999977 67888887 32 11234455554 99999999999999998654
No 9
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=5.9e-13 Score=125.65 Aligned_cols=180 Identities=19% Similarity=0.266 Sum_probs=126.6
Q ss_pred cCeEEecceEEeCCCCeEEcCCCCCCcCCCCceEEEEecCceeecCCCCCCccceEEEEEEEEecCCCCCCCCCCCCcEE
Q 042239 49 HDLKLLGSAKLSNEKRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVTKTPTSFETTFSFQFNTSNNTRTSRDGGSSLT 128 (413)
Q Consensus 49 ~~l~l~G~A~~~~~~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~~~~~sF~t~F~f~i~~~~~~~~~~~~gdGla 128 (413)
.++.+.|++.+. .+.||||++.+ ++.|.+|-.+||-.. .|+..+.|+++... +...|||||
T Consensus 72 ~~W~~~Gstvv~--~~~irLT~d~q-----sk~GAv~n~~Pv~s~--------~wev~v~fkv~~~s----~~lfgdG~A 132 (351)
T KOG3839|consen 72 PNWNLSGSTVVT--SNYIRLTPDEQ-----SKSGAVWNRQPVFSR--------DWEVLVHFKVHGQS----KNLFGDGMA 132 (351)
T ss_pred cCccccccEEEE--eeeeecccccc-----ccccccccCCCcccc--------ceeEEEEEEEecCC----CcccccceE
Confidence 679999999998 89999999987 899999999999866 49999999999887 788999999
Q ss_pred EEEecCCCCCCCCCCccccccCCCCCCCceEEEEeeecccCccCCCC--CCceeEecC--CCc-----ccccccCCCCcc
Q 042239 129 FIIVPDEFTVGRAGPWLGVLNDACKDDYKAVAVKFDTCRDLEFGGPN--DNHVGINLG--SIV-----STRAINASDVGI 199 (413)
Q Consensus 129 F~l~~~~~~~~~~g~~lGl~~~~~~g~~~~vAVEfDT~~n~~~~dp~--~~Hvgi~~n--s~~-----s~~~~~~~~~~~ 199 (413)
++++.+... .|.-+|-+ .+-+-+||-.|||-|.+ +-+. -.-|.+.+| +.. +.+.+.+.....
T Consensus 133 iw~t~Er~q---~GPvFG~~-----dkF~GL~vfidtY~n~~-g~~~~v~P~isvmv~~gs~sYD~~~Dg~~tel~gc~a 203 (351)
T KOG3839|consen 133 IWYTKERAQ---PGPVFGSK-----DKFTGLAVFIDTYGNHN-GPHEHVFPYISVMVNIGSLSYDHSKDGTHTELAGCTA 203 (351)
T ss_pred EEeeccccc---CCCCCCCc-----ccceeEEEEEeccCCcC-CCcccceeeEEEEeccCCcccccCCCCCcccccccee
Confidence 999988754 33444431 12344799999998852 1111 122333332 211 111222222233
Q ss_pred ccCCCC-eEEEEEEEeCCCcEEEEEEEecCCCCCCCCCeee------------eeeeecCCccceEeEEeeEEe
Q 042239 200 FLNDGS-VHRAWIAYDGTRGWMDVRIGSDGRDYPSTKPTFS------------GFSASTGNMTQIHNLLSWNFS 260 (413)
Q Consensus 200 ~l~~g~-~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~~l~------------GFsasTG~~~~~h~I~sWsf~ 260 (413)
++++.. ...+.|.|+. ++|++..+ .++ ......+++ |+||+||+.++.|+|+|-.+.
T Consensus 204 ~~rn~~~dt~~~iry~~--~~l~~~~d-l~~-~~~~~~c~~~n~v~lp~g~~fg~SasTGdlSd~HdivS~kl~ 273 (351)
T KOG3839|consen 204 NFRNLPHDTLVVIRYEK--KTLSISID-LEG-PNEWIDCFSLNNVELPLGYFFGVSASTGDLSDSHDIVSLKLF 273 (351)
T ss_pred eeccCCCcceeEEEecC--CceEEEEe-cCC-CceeeeeeeecceecccceEEeeeeccCccchhhHHHHhhhh
Confidence 444433 3468899988 78888887 655 344455554 999999999999999987653
No 10
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=4.9e-10 Score=107.73 Aligned_cols=179 Identities=21% Similarity=0.283 Sum_probs=119.3
Q ss_pred CeEEecceEEeCCCCeEEcCCCCCCcCCCCceEEEEecCceeecCCCCCCccceEEEEEEEEecCCCCCCCCCCCCcEEE
Q 042239 50 DLKLLGSAKLSNEKRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVTKTPTSFETTFSFQFNTSNNTRTSRDGGSSLTF 129 (413)
Q Consensus 50 ~l~l~G~A~~~~~~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~~~~~sF~t~F~f~i~~~~~~~~~~~~gdGlaF 129 (413)
-+...|||-.+ ...|||+++-. ++.|.||-+..+++-+ |..+.+|+++..+ -.+|||||+
T Consensus 55 FW~~~GdAIas--~eqvRlaPSmr-----srkGavWtka~~~fe~--------weVev~~rVtGrG-----RiGAdGlai 114 (497)
T KOG3838|consen 55 FWSHHGDAIAS--SEQVRLAPSMR-----SRKGAVWTKASVPFEN--------WEVEVQFRVTGRG-----RIGADGLAI 114 (497)
T ss_pred eeeecCccccc--ccceeeccccc-----cccCceeecccCCccc--------ceEEEEEEecccc-----cccCCceEE
Confidence 36778999887 88999999865 8899999999998864 9999999999874 678999999
Q ss_pred EEecCCCCCCCCCCccccccCCCCCCCceEEEEeeecccCccCCCCCCceeEecCC-Cccccc------ccCCCCccccC
Q 042239 130 IIVPDEFTVGRAGPWLGVLNDACKDDYKAVAVKFDTCRDLEFGGPNDNHVGINLGS-IVSTRA------INASDVGIFLN 202 (413)
Q Consensus 130 ~l~~~~~~~~~~g~~lGl~~~~~~g~~~~vAVEfDT~~n~~~~dp~~~Hvgi~~ns-~~s~~~------~~~~~~~~~l~ 202 (413)
+.+.... ..|.-+|=.+. =+-+++-||.+.|. +.-++.-|.+-.|. ..+... .-+++.--+++
T Consensus 115 WYt~~~G---~~GpVfGg~d~-----WnGigiffDSfdnD--~qknnP~Is~~lndGt~~ydh~~DGasQ~LssCqrDFR 184 (497)
T KOG3838|consen 115 WYTRGRG---HVGPVFGGLDS-----WNGIGIFFDSFDND--GQKNNPAISVLLNDGTIPYDHPGDGASQGLSSCQRDFR 184 (497)
T ss_pred EEecCCC---ccccccccccc-----ccceEEEeeccccc--CCcCCccEEEEecCCcccccCCCccHHHHHHHhhHHhc
Confidence 9987542 22222221111 12248999999885 23455667776543 221111 11111112333
Q ss_pred CC-CeEEEEEEEeCCCcEEEEEEEecCCCC-CCCCCeee------------eeeeecCCccceEeEEeeEEee
Q 042239 203 DG-SVHRAWIAYDGTRGWMDVRIGSDGRDY-PSTKPTFS------------GFSASTGNMTQIHNLLSWNFSS 261 (413)
Q Consensus 203 ~g-~~~~v~I~Y~~~~~~L~V~l~~~~~~~-~~~~~~l~------------GFsasTG~~~~~h~I~sWsf~~ 261 (413)
|. -+..++|+|-. ++|+|.+. .+... .+-.-|+. |.||+||++..-|+|+++.-.+
T Consensus 185 NkPyPvRarItY~~--nvLtv~in-nGmtp~d~yE~C~rve~~~lp~nGyFGvSAATGgLADDHDVl~Fltfs 254 (497)
T KOG3838|consen 185 NKPYPVRARITYYG--NVLTVMIN-NGMTPSDDYEFCVRVENLLLPPNGYFGVSAATGGLADDHDVLSFLTFS 254 (497)
T ss_pred cCCCCceEEEEEec--cEEEEEEc-CCCCCCCCcceeEeccceeccCCCeeeeeecccccccccceeeeEEee
Confidence 32 25789999955 89999997 44311 12222333 9999999999999999876443
No 11
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.97 E-value=3.3e-10 Score=113.07 Aligned_cols=62 Identities=42% Similarity=0.607 Sum_probs=54.1
Q ss_pred CCceeecccccccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecCCcccccCcchhhhhccC
Q 042239 346 KPRRFTLSEISVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQFLSSQQGLDKRRLLEEI 413 (413)
Q Consensus 346 ~~~~fs~~eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~~~~s~~~~~~~eF~~Ev 413 (413)
..+.|+|+||.+||++|+++++||+||||.||||.++++.. ||||++... +.+. .+||.+||
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~-vAVK~~~~~---~~~~--~~eF~~Ei 122 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTV-VAVKRLSSN---SGQG--EREFLNEV 122 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCE-EEEEEecCC---CCcc--hhHHHHHH
Confidence 56789999999999999999999999999999999999977 999999876 4442 35688875
No 12
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=98.96 E-value=8.6e-08 Score=87.85 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCeEEcCCCCCCcCCCCceEEEEecCceeecCCCCCCccceEEEEEEEEecCCCCCCCCCCCCcEEEEEecCC--CCCCC
Q 042239 63 KRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVTKTPTSFETTFSFQFNTSNNTRTSRDGGSSLTFIIVPDE--FTVGR 140 (413)
Q Consensus 63 ~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~~~~~sF~t~F~f~i~~~~~~~~~~~~gdGlaF~l~~~~--~~~~~ 140 (413)
++.||||++.. +++|.+.|.+.++--+ .....+|.+..-.. ...+||||||||.-.. ..+|.
T Consensus 31 ~g~LRLT~~~~-----nqata~~~~~~FPs~~------n~v~veFd~yayg~-----~g~GADGia~vLsDasv~p~~G~ 94 (255)
T cd06900 31 NNRLRLTDASG-----NQATAVTLQRLFPSAG------NYVEVEFDYYAYGS-----GGNGADGVALVLSDASVTPQAGA 94 (255)
T ss_pred cCeEEeccCcc-----CcceeEEEeeeeccCC------CeEEEEEEEEEecC-----CCCCCceEEEEEeCCCcCCcCCC
Confidence 79999999976 8999999999988643 24888998887654 3668999999998543 45799
Q ss_pred CCCccccccCC--CCCC-CceEEEEeeecccC
Q 042239 141 AGPWLGVLNDA--CKDD-YKAVAVKFDTCRDL 169 (413)
Q Consensus 141 ~g~~lGl~~~~--~~g~-~~~vAVEfDT~~n~ 169 (413)
.|+.|||-... ..|. -..+.|-||-|-|.
T Consensus 95 fGGsLGYa~~~~~~~GfaGGwLGiGlDEyGNF 126 (255)
T cd06900 95 FGGSLGYAQRNDGVPGFAGGWLGIGLDEYGNF 126 (255)
T ss_pred cCcccccccccCCCCccccceEEEEEeccccc
Confidence 99999997654 2343 67889989988774
No 13
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=98.11 E-value=6e-06 Score=82.49 Aligned_cols=30 Identities=40% Similarity=0.540 Sum_probs=25.7
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
..+||+|+||.||||.|.+ +. ||||.+...
T Consensus 215 ~eli~~Grfg~V~KaqL~~-~~-VAVKifp~~ 244 (534)
T KOG3653|consen 215 LELIGRGRFGCVWKAQLDN-RL-VAVKIFPEQ 244 (534)
T ss_pred HHHhhcCccceeehhhccC-ce-eEEEecCHH
Confidence 5789999999999999976 44 999999653
No 14
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=97.86 E-value=1.1e-05 Score=85.13 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=46.7
Q ss_pred ceeecccccccccCCCC---------CceeccCCCceEEEEEeCCC---CeeEEEEEeecCCcccccCcchhhhhcc
Q 042239 348 RRFTLSEISVATRAFSE---------LECLGSDYRGVYYRGKLPNG---RQPVAGKRFSSQFLSSQQGLDKRRLLEE 412 (413)
Q Consensus 348 ~~fs~~eL~~AT~~Fs~---------~~~LG~G~fG~VYkG~L~~g---~~~VAVKrl~~~~~~s~~~~~~~eF~~E 412 (413)
..++|+|--+|.+.|.. +.+||.|.||.||+|.|+-. ...||||.|+.. ...+. +.+|+.|
T Consensus 608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~G--ytekq--rrdFL~E 680 (996)
T KOG0196|consen 608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAG--YTEKQ--RRDFLSE 680 (996)
T ss_pred CCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccC--ccHHH--Hhhhhhh
Confidence 34688887777776665 67999999999999999432 235999999986 24455 6789887
No 15
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.65 E-value=0.00012 Score=82.45 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=32.9
Q ss_pred eecccccccccCCCCCceeccCCCceEEEEEeC-CCCeeEEEEEeecC
Q 042239 350 FTLSEISVATRAFSELECLGSDYRGVYYRGKLP-NGRQPVAGKRFSSQ 396 (413)
Q Consensus 350 fs~~eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~-~g~~~VAVKrl~~~ 396 (413)
++++++. ..+.+.++||+|+||.||||... ++.. ||||++...
T Consensus 683 ~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~~~-vavK~~~~~ 726 (968)
T PLN00113 683 ITINDIL---SSLKEENVISRGKKGASYKGKSIKNGMQ-FVVKEINDV 726 (968)
T ss_pred hhHHHHH---hhCCcccEEccCCCeeEEEEEECCCCcE-EEEEEccCC
Confidence 4445544 34677899999999999999984 4555 999999653
No 16
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=97.26 E-value=0.00042 Score=73.87 Aligned_cols=47 Identities=34% Similarity=0.478 Sum_probs=34.3
Q ss_pred CCCCceeccCCCceEEEEEe-CCCC---eeEEEEEeecCCcccccCcchhhhhcc
Q 042239 362 FSELECLGSDYRGVYYRGKL-PNGR---QPVAGKRFSSQFLSSQQGLDKRRLLEE 412 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L-~~g~---~~VAVKrl~~~~~~s~~~~~~~eF~~E 412 (413)
+.+..+||+|.||+||||.. |.|. .+||+|.+... .+.+. ..||+.|
T Consensus 698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~--t~~~~--s~e~Lde 748 (1177)
T KOG1025|consen 698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEF--TSPKA--SIELLDE 748 (1177)
T ss_pred hhhhceeccccceeEEeeeEecCCceecceeEEEEeecc--CCchh--hHHHHHH
Confidence 34568999999999999976 6654 36999998765 13444 5677765
No 17
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=96.95 E-value=0.0094 Score=61.71 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=36.0
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecCCcccccCcchhhhhccC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQFLSSQQGLDKRRLLEEI 413 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~~~~s~~~~~~~eF~~Ev 413 (413)
.++||+|-||.|--+++.++.. ||||+++.. +.... +++|..||
T Consensus 543 ~ekiGeGqFGEVhLCeveg~lk-VAVK~Lr~~--a~~~~--r~~F~kEI 586 (807)
T KOG1094|consen 543 KEKIGEGQFGEVHLCEVEGPLK-VAVKILRPD--ATKNA--RNDFLKEI 586 (807)
T ss_pred hhhhcCcccceeEEEEecCceE-EEEeecCcc--cchhH--HHHHHHHH
Confidence 5689999999999999988777 999999886 13334 68898875
No 18
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=96.86 E-value=0.00096 Score=69.62 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=30.4
Q ss_pred cccCCCCCceeccCCCceEEEEEe-----------------CCCCeeEEEEEeecC
Q 042239 358 ATRAFSELECLGSDYRGVYYRGKL-----------------PNGRQPVAGKRFSSQ 396 (413)
Q Consensus 358 AT~~Fs~~~~LG~G~fG~VYkG~L-----------------~~g~~~VAVKrl~~~ 396 (413)
..++|...++||+|+||.||||.+ .++.. ||||++...
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~-VAVK~l~~~ 197 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRR-VVLKRVNMD 197 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCce-EEEEEeccc
Confidence 456788899999999999999975 22344 999999764
No 19
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=96.63 E-value=0.0015 Score=67.54 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=32.8
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecCCcccccCcchhhhhccC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQFLSSQQGLDKRRLLEEI 413 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~~~~s~~~~~~~eF~~Ev 413 (413)
...||+|.||+||||..-+ . ||||.|+.... +.+. .++|..||
T Consensus 397 ~~rIGsGsFGtV~Rg~whG--d-VAVK~Lnv~~p-t~~q--lqaFKnEV 439 (678)
T KOG0193|consen 397 GERIGSGSFGTVYRGRWHG--D-VAVKLLNVDDP-TPEQ--LQAFKNEV 439 (678)
T ss_pred cceeccccccceeeccccc--c-eEEEEEecCCC-CHHH--HHHHHHHH
Confidence 4689999999999999865 3 99999987522 2223 57788875
No 20
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.54 E-value=0.0041 Score=62.31 Aligned_cols=30 Identities=37% Similarity=0.471 Sum_probs=25.4
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
...||+|.||.|+||...+. . ||||.+...
T Consensus 216 ~e~IGkGRyGEVwrG~wrGe-~-VAVKiF~sr 245 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRGRWRGE-D-VAVKIFSSR 245 (513)
T ss_pred EEEecCccccceeeccccCC-c-eEEEEeccc
Confidence 47899999999999999754 4 999999653
No 21
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=96.40 E-value=0.003 Score=61.70 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=29.1
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
+.+.+++|.|.||.||+|.+.....+|||||...+
T Consensus 26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d 60 (364)
T KOG0658|consen 26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQD 60 (364)
T ss_pred EEeeEEEeecccceEEEEEEcCCCceeEEEEecCC
Confidence 33468999999999999999665555999999875
No 22
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.0037 Score=66.99 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=34.4
Q ss_pred CceeccCCCceEEEEEeCCCC-----eeEEEEEeecCCcccccCcchhhhhccC
Q 042239 365 LECLGSDYRGVYYRGKLPNGR-----QPVAGKRFSSQFLSSQQGLDKRRLLEEI 413 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~-----~~VAVKrl~~~~~~s~~~~~~~eF~~Ev 413 (413)
...||+|.||.||+|...+.. +-||||.|+.. .+.+. .++|.+|+
T Consensus 491 ~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~--a~~~~--~~dF~REa 540 (774)
T KOG1026|consen 491 KEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDK--AENQA--RQDFRREA 540 (774)
T ss_pred hhhhcCchhhhhhhhhccCCCCCccceehhHhhhccc--ccHHH--HHHHHHHH
Confidence 578999999999999985532 23999999876 24445 67888773
No 23
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=95.85 E-value=0.011 Score=55.66 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=35.0
Q ss_pred cccccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEee
Q 042239 354 EISVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFS 394 (413)
Q Consensus 354 eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~ 394 (413)
|++.++.+++...+||+|+||.||+|...+.+..||+|.+.
T Consensus 2 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~ 42 (268)
T cd06624 2 EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIP 42 (268)
T ss_pred CcccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEec
Confidence 56778999999999999999999999976555459999875
No 24
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=95.81 E-value=0.0052 Score=60.90 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=28.5
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
|.-...||+|.|++||||.....+.+||||++...
T Consensus 12 y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~ 46 (429)
T KOG0595|consen 12 YELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKK 46 (429)
T ss_pred ceehhhccCcceEEEEEeEeccCCceEEeeeehhh
Confidence 33345599999999999999776667999999764
No 25
>PTZ00284 protein kinase; Provisional
Probab=95.50 E-value=0.012 Score=60.83 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=34.0
Q ss_pred ccccccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 353 SEISVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 353 ~eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
+++...++.|.-.++||+|+||+||++........||||+++.
T Consensus 122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~ 164 (467)
T PTZ00284 122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRN 164 (467)
T ss_pred CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEec
Confidence 4555566777777899999999999998765444599999864
No 26
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=95.31 E-value=0.023 Score=60.45 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=31.1
Q ss_pred cccCCCCCceeccCCCceEEEEEeCCC----CeeEEEEEeec
Q 042239 358 ATRAFSELECLGSDYRGVYYRGKLPNG----RQPVAGKRFSS 395 (413)
Q Consensus 358 AT~~Fs~~~~LG~G~fG~VYkG~L~~g----~~~VAVKrl~~ 395 (413)
..++|...++||+|+||.||+|...+. ...||||++..
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~ 171 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE 171 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence 556777789999999999999998664 33499999865
No 27
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=95.18 E-value=0.025 Score=53.68 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=39.1
Q ss_pred eeecccccccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 349 RFTLSEISVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 349 ~fs~~eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
.+.++++..++++|.-...||+|+||.||++........+|+|.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~ 53 (286)
T cd06638 7 TIIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDP 53 (286)
T ss_pred eEEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecc
Confidence 46678888899999888999999999999998865444499998865
No 28
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=94.84 E-value=0.019 Score=63.79 Aligned_cols=44 Identities=34% Similarity=0.432 Sum_probs=34.2
Q ss_pred CceeccCCCceEEEEEeCC--C---CeeEEEEEeecCCcccccCcchhhhhcc
Q 042239 365 LECLGSDYRGVYYRGKLPN--G---RQPVAGKRFSSQFLSSQQGLDKRRLLEE 412 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~--g---~~~VAVKrl~~~~~~s~~~~~~~eF~~E 412 (413)
.+.||+|.||.||+|.+.+ + ...||||++.+. ++.+. ..+|+.|
T Consensus 697 ~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~--~~~~~--~~~Fl~E 745 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRL--SSEQE--VSDFLKE 745 (1025)
T ss_pred eeeeccccccceEEEEEecCCCCccceEEEEEecccc--CCHHH--HHHHHHH
Confidence 5789999999999999854 2 224999999875 35555 6788876
No 29
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=94.75 E-value=0.03 Score=53.46 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=39.2
Q ss_pred eeecccccccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 349 RFTLSEISVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 349 ~fs~~eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
.++++++.+++++|.-...||+|+||.||++.....+..+|+|.+..
T Consensus 11 ~~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~ 57 (291)
T cd06639 11 MLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDP 57 (291)
T ss_pred hhhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecc
Confidence 35678888899999988999999999999999855444499999865
No 30
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=94.54 E-value=0.026 Score=54.75 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=27.4
Q ss_pred CCCCCceeccCCCceEEEEEeCCCCe----eEEEEEeecC
Q 042239 361 AFSELECLGSDYRGVYYRGKLPNGRQ----PVAGKRFSSQ 396 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~~g~~----~VAVKrl~~~ 396 (413)
.|...+.||+|+||.||||.....+. .||||.+...
T Consensus 8 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~ 47 (316)
T cd05108 8 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA 47 (316)
T ss_pred hceeeeeeecCCCceEEEEEEecCCCccceeEEEEecccc
Confidence 36667899999999999998643222 3899998653
No 31
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=94.25 E-value=0.038 Score=54.43 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=28.2
Q ss_pred cCCCCCceeccCCCceEEEEEeCC-CCeeEEEEEeec
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPN-GRQPVAGKRFSS 395 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~-g~~~VAVKrl~~ 395 (413)
+.|...+.||+|+||.||+|.... +.. ||||++..
T Consensus 15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~-vaiK~~~~ 50 (342)
T cd07879 15 ERYTSLKQVGSGAYGSVCSAIDKRTGEK-VAIKKLSR 50 (342)
T ss_pred cceEEEEEeeecCCeEEEEEEeCCCCcE-EEEEEecC
Confidence 456666899999999999999654 555 99999865
No 32
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=94.23 E-value=0.035 Score=55.55 Aligned_cols=45 Identities=29% Similarity=0.309 Sum_probs=31.8
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecCCcccccCcchhhhhccC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQFLSSQQGLDKRRLLEEI 413 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~~~~s~~~~~~~eF~~Ev 413 (413)
.+.||+|+||+||||...+... ||||++... .......++|..|+
T Consensus 46 ~~~iG~G~~g~V~~~~~~g~~~-vavK~~~~~---~~~~~~~~~f~~E~ 90 (362)
T KOG0192|consen 46 EEVLGSGSFGTVYKGKWRGTDV-VAVKIISDP---DFDDESRKAFRREA 90 (362)
T ss_pred hhhcccCCceeEEEEEeCCcee-EEEEEecch---hcChHHHHHHHHHH
Confidence 4559999999999999976555 999999764 22220034677663
No 33
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=93.76 E-value=0.052 Score=56.74 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=29.3
Q ss_pred cccCCCCCceeccCCCceEEEEEeC-CCCeeEEEEEeecC
Q 042239 358 ATRAFSELECLGSDYRGVYYRGKLP-NGRQPVAGKRFSSQ 396 (413)
Q Consensus 358 AT~~Fs~~~~LG~G~fG~VYkG~L~-~g~~~VAVKrl~~~ 396 (413)
..+.|.-.++||+|+||+||++... ++.. ||||++...
T Consensus 30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~-vAvK~i~~~ 68 (496)
T PTZ00283 30 QAKKYWISRVLGSGATGTVLCAKRVSDGEP-FAVKVVDME 68 (496)
T ss_pred cCCCEEEEEEEecCCCEEEEEEEEcCCCCE-EEEEEEecc
Confidence 3445555689999999999999864 4555 999998653
No 34
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=93.67 E-value=0.045 Score=54.02 Aligned_cols=47 Identities=19% Similarity=0.083 Sum_probs=35.8
Q ss_pred eeecccccccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 349 RFTLSEISVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 349 ~fs~~eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
+...+++..++++|.....||+|+||.||++.....+..||||++..
T Consensus 6 ~~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~ 52 (345)
T cd07877 6 QELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR 52 (345)
T ss_pred hhHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecC
Confidence 33445666777888777899999999999998644333499999965
No 35
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=93.53 E-value=0.054 Score=55.77 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=32.4
Q ss_pred CceeccCCCceEEEEEeCCC---Cee-EEEEEeecCCcccccCcchhhhhcc
Q 042239 365 LECLGSDYRGVYYRGKLPNG---RQP-VAGKRFSSQFLSSQQGLDKRRLLEE 412 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g---~~~-VAVKrl~~~~~~s~~~~~~~eF~~E 412 (413)
..+||+|.||.||+|.|.-+ ... ||||..+......+.. ..+|++|
T Consensus 162 ~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~--~~e~m~E 211 (474)
T KOG0194|consen 162 GKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQ--IKEFMKE 211 (474)
T ss_pred cceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHH--HHHHHHH
Confidence 37899999999999998543 122 8999987531113444 6788876
No 36
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.31 E-value=0.065 Score=53.80 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=27.5
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
|....+||+|.||.||||.-..-...||+|.+.-+
T Consensus 15 ~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le 49 (467)
T KOG0201|consen 15 YTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLE 49 (467)
T ss_pred cccchhccccccceeeeeeeccccceEEEEEechh
Confidence 45557899999999999997544444999999654
No 37
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=93.29 E-value=0.077 Score=50.27 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=36.8
Q ss_pred eecccccccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 350 FTLSEISVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 350 fs~~eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
.++.++..+.+.|.-..+||.|+||.||+|........+|+|.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~ 52 (282)
T cd06636 6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVT 52 (282)
T ss_pred hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecC
Confidence 35567777777787788999999999999998554444999988653
No 38
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=93.10 E-value=0.062 Score=55.26 Aligned_cols=46 Identities=28% Similarity=0.304 Sum_probs=32.5
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecCCcccccCcchhhhhccC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQFLSSQQGLDKRRLLEEI 413 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~~~~s~~~~~~~eF~~Ev 413 (413)
+++||.|-||+||-|.-+..+..||||.+.+.-+ ..++ +.+..+||
T Consensus 569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrF-p~kq--esqlR~EV 614 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRF-PTKQ--ESQLRNEV 614 (888)
T ss_pred HhhccCCcceeeecceecccCceeeeeeeecccC-CCch--HHHHHHHH
Confidence 6799999999999998865444599999976422 2233 44555553
No 39
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=93.03 E-value=0.049 Score=54.46 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=29.5
Q ss_pred cccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 358 ATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 358 AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
..++|.-.++||+|+||.||++.....+..+|+|.+..
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~ 78 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSK 78 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEH
Confidence 34456556889999999999998865444499999964
No 40
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=92.98 E-value=0.1 Score=51.07 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=34.1
Q ss_pred ccccccccCCCCCceeccCCCceEEEEEeC-CCCeeEEEEEeec
Q 042239 353 SEISVATRAFSELECLGSDYRGVYYRGKLP-NGRQPVAGKRFSS 395 (413)
Q Consensus 353 ~eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~-~g~~~VAVKrl~~ 395 (413)
.++..++++|...++||+|+||.||++.-. ++.. ||||++..
T Consensus 3 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~-vaiK~~~~ 45 (328)
T cd07856 3 GTVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQN-VAIKKIMK 45 (328)
T ss_pred cceeccccceEEEEeecccCCeEEEEEEECCCCCE-EEEEEecc
Confidence 456667888888899999999999999865 4555 99999854
No 41
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=92.88 E-value=0.074 Score=53.27 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=26.3
Q ss_pred CCCCCceeccCCCceEEEEEe-----CCCCeeEEEEEeecC
Q 042239 361 AFSELECLGSDYRGVYYRGKL-----PNGRQPVAGKRFSSQ 396 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L-----~~g~~~VAVKrl~~~ 396 (413)
+|.-.++||+|+||.||++.. .+....||||+++..
T Consensus 36 ~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~ 76 (375)
T cd05104 36 RLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPS 76 (375)
T ss_pred HeehhheecCCccceEEEEEEeccccCccceeEEEEeccCC
Confidence 344468999999999999963 222334999999753
No 42
>PRK09188 serine/threonine protein kinase; Provisional
Probab=92.79 E-value=0.13 Score=51.53 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=29.0
Q ss_pred ccccCCCCCceeccCCCceEEEEEeC--CCCeeEEEEEee
Q 042239 357 VATRAFSELECLGSDYRGVYYRGKLP--NGRQPVAGKRFS 394 (413)
Q Consensus 357 ~AT~~Fs~~~~LG~G~fG~VYkG~L~--~g~~~VAVKrl~ 394 (413)
....+|....+||+|+||+||+|... ++.. +|||++.
T Consensus 15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~-vAiK~~~ 53 (365)
T PRK09188 15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTA-RAVRRRV 53 (365)
T ss_pred cccCCceEccEEeecCcEEEEEEEEcCCCCeE-EEEEEec
Confidence 34455777899999999999999875 3444 8999875
No 43
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=92.75 E-value=0.079 Score=52.42 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=25.8
Q ss_pred CCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 364 ELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 364 ~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
..++||+|+||.||++.....+..||||.+...
T Consensus 78 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 110 (353)
T PLN00034 78 RVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGN 110 (353)
T ss_pred hhhhccCCCCeEEEEEEECCCCCEEEEEEEecC
Confidence 347899999999999987543334999998653
No 44
>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=92.74 E-value=0.074 Score=52.42 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=25.8
Q ss_pred CCCCceeccCCCceEEEEEe------CCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKL------PNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L------~~g~~~VAVKrl~~~ 396 (413)
|.-..+||+|+||.||+|.- ..+.. ||||++...
T Consensus 9 ~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~-vavK~~~~~ 48 (343)
T cd05103 9 LKLGKPLGRGAFGQVIEADAFGIDKTATCRT-VAVKMLKEG 48 (343)
T ss_pred hcccccccCCccceEEEEeeccCCcccccee-EEEEEeccC
Confidence 33457899999999999962 33445 999999753
No 45
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=92.72 E-value=0.055 Score=53.00 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=25.2
Q ss_pred CCCCceeccCCCceEEEEEe------CCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKL------PNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L------~~g~~~VAVKrl~~~ 396 (413)
|.-.++||+|+||.||++.. ..+.. ||||++...
T Consensus 9 ~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~-vavK~~~~~ 48 (338)
T cd05102 9 LRLGKVLGHGAFGKVVEASAFGIDKKSSCNT-VAVKMLKEG 48 (338)
T ss_pred ceeeeEeccCCcceEEEEEEeccCCcccchh-hheeccccc
Confidence 33357899999999999974 12334 999999753
No 46
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=92.53 E-value=0.11 Score=46.99 Aligned_cols=32 Identities=25% Similarity=0.129 Sum_probs=27.2
Q ss_pred CCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 363 SELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 363 s~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
.-.+.||+|+||.||++..++|.. ||||++..
T Consensus 18 ~~~~~i~~G~~g~Vy~~~~~~g~~-vavK~~~~ 49 (198)
T cd05144 18 SLGNQIGVGKESDVYLALDPDGNP-VALKFHRL 49 (198)
T ss_pred hcCCccccCcceEEEEEEcCCCCE-EEEEEEec
Confidence 335789999999999999987777 99998754
No 47
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=92.46 E-value=0.07 Score=56.64 Aligned_cols=43 Identities=33% Similarity=0.342 Sum_probs=33.2
Q ss_pred ceeccCCCceEEEEEeC--CCC-eeEEEEEeecCCccccc-CcchhhhhccC
Q 042239 366 ECLGSDYRGVYYRGKLP--NGR-QPVAGKRFSSQFLSSQQ-GLDKRRLLEEI 413 (413)
Q Consensus 366 ~~LG~G~fG~VYkG~L~--~g~-~~VAVKrl~~~~~~s~~-~~~~~eF~~Ev 413 (413)
++||+|.||.|.+|... +|. +.||||.|..+ ... . ..+|+.|+
T Consensus 116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d---~l~~~--mddflrEa 162 (1039)
T KOG0199|consen 116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDD---SLNAI--MDDFLREA 162 (1039)
T ss_pred HHhcCcceeeEeeccccCCCCcEEeEEEEeccCC---ccchh--HHHHHHHH
Confidence 67999999999999873 343 46999999876 333 4 67898874
No 48
>PTZ00036 glycogen synthase kinase; Provisional
Probab=92.45 E-value=0.13 Score=52.91 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=29.3
Q ss_pred ccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 359 TRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 359 T~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
.+.|.-.++||+|+||.||+|...+....||||++...
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~ 102 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD 102 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC
Confidence 34465678999999999999998654444999998653
No 49
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=92.39 E-value=0.074 Score=52.09 Aligned_cols=34 Identities=24% Similarity=0.085 Sum_probs=27.2
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
|.-.+.||+|+||.||++.....+..||||.+..
T Consensus 20 y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~ 53 (329)
T PTZ00263 20 FEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKK 53 (329)
T ss_pred eEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEH
Confidence 4445789999999999999865444499999865
No 50
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=92.10 E-value=0.16 Score=49.01 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=28.4
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
+.|...++||+|+||.||+|.....+..||+|++..
T Consensus 15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~ 50 (307)
T cd06607 15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSY 50 (307)
T ss_pred hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEec
Confidence 336667889999999999999865444499999864
No 51
>PHA02988 hypothetical protein; Provisional
Probab=92.03 E-value=0.18 Score=48.27 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=33.1
Q ss_pred CCceeecccccccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 346 KPRRFTLSEISVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 346 ~~~~fs~~eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
..+.++++++..- +...|++|++|.||||.. ++.. ||||+++..
T Consensus 11 ~~~~i~~~~i~~~-----~~~~i~~g~~~~v~~~~~-~~~~-vavK~~~~~ 54 (283)
T PHA02988 11 DIKCIESDDIDKY-----TSVLIKENDQNSIYKGIF-NNKE-VIIRTFKKF 54 (283)
T ss_pred cceecCHHHcCCC-----CCeEEeeCCceEEEEEEE-CCEE-EEEEecccc
Confidence 3455667777432 347899999999999998 4555 999999764
No 52
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=91.88 E-value=0.091 Score=52.59 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=29.7
Q ss_pred cccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 358 ATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 358 AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
..++|.-.++||+|+||.||++.....+..+|+|.+..
T Consensus 41 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~ 78 (370)
T cd05621 41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSK 78 (370)
T ss_pred CHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEH
Confidence 34556556889999999999999866544499999864
No 53
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=91.77 E-value=0.15 Score=51.72 Aligned_cols=35 Identities=23% Similarity=0.050 Sum_probs=25.3
Q ss_pred CCCCceeccCCCceEEEEEeCCC-----CeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPNG-----RQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g-----~~~VAVKrl~~~ 396 (413)
|.-.++||+|+||.||+|+.... ...||||++...
T Consensus 39 ~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~ 78 (400)
T cd05105 39 LVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPT 78 (400)
T ss_pred eehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCC
Confidence 33357899999999999985221 123999999653
No 54
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=91.67 E-value=0.14 Score=50.33 Aligned_cols=36 Identities=28% Similarity=0.251 Sum_probs=27.7
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
+.|.....||+|+||.||++.-...+..||||++..
T Consensus 15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 50 (343)
T cd07878 15 ERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSR 50 (343)
T ss_pred hhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCc
Confidence 345555789999999999998754444499999865
No 55
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=91.45 E-value=0.22 Score=47.83 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=27.6
Q ss_pred CCCCCceeccCCCceEEEEEeC-CCCeeEEEEEeecC
Q 042239 361 AFSELECLGSDYRGVYYRGKLP-NGRQPVAGKRFSSQ 396 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~-~g~~~VAVKrl~~~ 396 (413)
.|...+.||+|++|.||++.-. ++.. ||+|.+...
T Consensus 20 ~y~~~~~lg~g~~g~v~~~~~~~~~~~-vaiK~~~~~ 55 (297)
T cd06656 20 KYTRFEKIGQGASGTVYTAIDIATGQE-VAIKQMNLQ 55 (297)
T ss_pred hceeeeeeccCCCeEEEEEEECCCCCE-EEEEEEecC
Confidence 3444678999999999999964 4555 999999754
No 56
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=91.45 E-value=0.14 Score=52.00 Aligned_cols=35 Identities=23% Similarity=0.094 Sum_probs=26.4
Q ss_pred CCCCceeccCCCceEEEEEeCC-----CCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPN-----GRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~-----g~~~VAVKrl~~~ 396 (413)
+.-..+||+|+||.||+|...+ ....||||+++..
T Consensus 39 ~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~ 78 (401)
T cd05107 39 LVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKST 78 (401)
T ss_pred eehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCC
Confidence 3345789999999999998643 2234999999753
No 57
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=91.29 E-value=0.14 Score=51.36 Aligned_cols=35 Identities=20% Similarity=0.095 Sum_probs=26.2
Q ss_pred CCCCCceeccCCCceEEEEEe------CCCCeeEEEEEeecC
Q 042239 361 AFSELECLGSDYRGVYYRGKL------PNGRQPVAGKRFSSQ 396 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L------~~g~~~VAVKrl~~~ 396 (413)
+|.-.++||+|+||.||++.. .++.. ||||++...
T Consensus 39 ~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~-vavK~~~~~ 79 (374)
T cd05106 39 NLQFGKTLGAGAFGKVVEATAFGLGKEDNVLR-VAVKMLKAS 79 (374)
T ss_pred HceehheecCCCcccEEEEEEecCCcccccce-eEEEeccCC
Confidence 355568899999999999873 12234 999999753
No 58
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=91.28 E-value=0.18 Score=49.86 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=28.2
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
+.|.-...||+|+||.||++.-...+..||||++..
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 56 (359)
T cd07876 21 KRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSR 56 (359)
T ss_pred hceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecc
Confidence 445556789999999999998755444499999965
No 59
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=91.17 E-value=0.2 Score=48.09 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=24.7
Q ss_pred ceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 366 ECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 366 ~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
.+||+|+||.||++.....+..||||++...
T Consensus 26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~ 56 (292)
T cd06657 26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLR 56 (292)
T ss_pred HHcCCCCCeEEEEEEEcCCCeEEEEEEeccc
Confidence 4699999999999988544444999998653
No 60
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=91.06 E-value=0.21 Score=48.45 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=28.0
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
|...+.||+|+||.||++.....+..+|+|++...
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~ 61 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYS 61 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecC
Confidence 56678899999999999997654444999998653
No 61
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=90.99 E-value=0.22 Score=49.34 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=28.7
Q ss_pred ccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 359 TRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 359 T~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
.+.|.-.++||+|+||.||++.-......||||++..
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 59 (364)
T cd07875 23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSR 59 (364)
T ss_pred hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCc
Confidence 3456556889999999999998654444499999965
No 62
>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=90.99 E-value=0.17 Score=47.89 Aligned_cols=35 Identities=34% Similarity=0.609 Sum_probs=26.1
Q ss_pred CCCCceeccCCCceEEEEEe-CCCCe---eEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKL-PNGRQ---PVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L-~~g~~---~VAVKrl~~~ 396 (413)
|...++||+|+||+||||.. +++.. .||||.+...
T Consensus 9 ~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~ 47 (279)
T cd05109 9 LKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLREN 47 (279)
T ss_pred eeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCC
Confidence 44457899999999999985 44432 3799998653
No 63
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=90.98 E-value=0.22 Score=47.54 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=26.0
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
..+||+|+||.||+|.....+..+++|.+...
T Consensus 17 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~ 48 (292)
T cd06644 17 IGELGDGAFGKVYKAKNKETGALAAAKVIETK 48 (292)
T ss_pred hheecCCCCeEEEEEEECCCCceEEEEEeccC
Confidence 46799999999999998664444999998764
No 64
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=90.79 E-value=0.2 Score=48.16 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=25.0
Q ss_pred CceeccCCCceEEEEEeC-CCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLP-NGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~-~g~~~VAVKrl~~~ 396 (413)
...||+|+||.||++... ++.. ||+|.+...
T Consensus 26 ~~~ig~g~~g~v~~~~~~~~~~~-v~iK~~~~~ 57 (297)
T cd06659 26 YIKIGEGSTGIVCIAREKHSGRQ-VAVKMMDLR 57 (297)
T ss_pred hhhcCCCCceeEEEEEEcCCCCE-EEEEEEEec
Confidence 357999999999999875 4555 999998654
No 65
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=90.74 E-value=0.21 Score=49.92 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=34.8
Q ss_pred cccccccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 352 LSEISVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 352 ~~eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
++++....++|.-...||+|+||.||++........+|+|.+..
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~ 78 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSK 78 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEH
Confidence 34556666778778899999999999999876555599999864
No 66
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=90.72 E-value=0.19 Score=49.15 Aligned_cols=36 Identities=31% Similarity=0.375 Sum_probs=28.4
Q ss_pred CCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 361 AFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
.|..-|.|++|.||.||||.-......||.||++-+
T Consensus 77 efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kme 112 (419)
T KOG0663|consen 77 EFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKME 112 (419)
T ss_pred HHHHHhhcccCcceeEEEeccCCcceeEEeeecccc
Confidence 354458999999999999987554445999999764
No 67
>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely
Probab=90.69 E-value=0.27 Score=46.99 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=29.4
Q ss_pred cccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEee
Q 042239 358 ATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFS 394 (413)
Q Consensus 358 AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~ 394 (413)
+.++|.-.++||+|+||.||+|.....+..||||+++
T Consensus 5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~ 41 (302)
T cd07864 5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVR 41 (302)
T ss_pred hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEe
Confidence 3455666789999999999999996544449999985
No 68
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=90.62 E-value=0.26 Score=46.78 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=32.4
Q ss_pred cccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 356 SVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 356 ~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
...+++|...+.||+|++|.||++........+++|.+...
T Consensus 15 ~~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~ 55 (286)
T cd06614 15 GDPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLR 55 (286)
T ss_pred CCccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecC
Confidence 34666777778999999999999998743334999999764
No 69
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=90.53 E-value=0.23 Score=48.99 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=28.3
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
+.|.....||+|+||.||++.-...+..||||++...
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 53 (355)
T cd07874 17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRP 53 (355)
T ss_pred hceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCc
Confidence 4455567899999999999986543444999999753
No 70
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=90.51 E-value=0.16 Score=51.88 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=33.2
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecCCcccccCcchhhhhccC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQFLSSQQGLDKRRLLEEI 413 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~~~~s~~~~~~~eF~~Ev 413 (413)
.+.||+|-||.|+.|...+... ||||.++.. + .. .++|.+|+
T Consensus 211 ~~~LG~G~FG~V~~g~~~~~~~-vavk~ik~~---~-m~--~~~f~~Ea 252 (468)
T KOG0197|consen 211 IRELGSGQFGEVWLGKWNGSTK-VAVKTIKEG---S-MS--PEAFLREA 252 (468)
T ss_pred HHHhcCCccceEEEEEEcCCCc-ccceEEecc---c-cC--hhHHHHHH
Confidence 4789999999999999976656 999999885 3 23 46777663
No 71
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=90.38 E-value=0.23 Score=48.46 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=25.3
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
-++||+|.||+||||.....+..||+|++.-.
T Consensus 16 ~eklGeGtyg~Vykar~~~~g~~VALKkirl~ 47 (323)
T KOG0594|consen 16 VEKLGEGTYGVVYKARSKRTGKFVALKKIRLE 47 (323)
T ss_pred HHHhCCCCceEEEEEEEecCCCEEEEEEEecc
Confidence 35699999999999987543333999999754
No 72
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=90.33 E-value=0.3 Score=46.81 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=26.6
Q ss_pred CCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 361 AFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
.|.-...||+|+||.||++.-...+..+|+|.+...
T Consensus 20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~ 55 (293)
T cd06647 20 KYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQ 55 (293)
T ss_pred hceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccc
Confidence 344457899999999999986443334999998653
No 73
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=90.25 E-value=0.23 Score=46.40 Aligned_cols=36 Identities=22% Similarity=0.069 Sum_probs=28.1
Q ss_pred CCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 361 AFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
.|.=...||+|.||.||.|.-+...-.||+|.+-..
T Consensus 23 dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKs 58 (281)
T KOG0580|consen 23 DFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKS 58 (281)
T ss_pred hccccccccCCccccEeEeeeccCCcEEEEeeeeHH
Confidence 344468899999999999998655444999998653
No 74
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=90.25 E-value=0.31 Score=46.42 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=26.7
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
+..-++||+|++|.||++.....+..+++|++...
T Consensus 21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~ 55 (285)
T cd06648 21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLR 55 (285)
T ss_pred hhcceEeccCCCeEEEEEEECCCCCEEEEEEEecc
Confidence 33347999999999999987543344999998654
No 75
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=90.17 E-value=0.34 Score=46.49 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=26.4
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
|.....||+|++|.||+|.-...+.++|+|.+...
T Consensus 22 y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~ 56 (296)
T cd06654 22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ 56 (296)
T ss_pred eeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecC
Confidence 33457799999999999986443334999999764
No 76
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=90.16 E-value=0.076 Score=50.28 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=25.3
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
...||+|.||+|+|-..+..+..+||||++..
T Consensus 69 lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~ 100 (361)
T KOG1006|consen 69 LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSN 100 (361)
T ss_pred HHHhcCCcchhhhhhhcCccCcEEEEEEeeec
Confidence 46799999999999877443344999999764
No 77
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=90.05 E-value=0.31 Score=46.85 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=26.5
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
|.....||.|++|.||+|.-...+..||+|.+...
T Consensus 21 y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~ 55 (296)
T cd06655 21 YTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQ 55 (296)
T ss_pred EEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecc
Confidence 43456799999999999986443344999998654
No 78
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=89.80 E-value=0.18 Score=49.75 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=26.3
Q ss_pred CCCCceeccCCCceEEEEEeCCCC-eeEEEEEeec
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGR-QPVAGKRFSS 395 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~-~~VAVKrl~~ 395 (413)
|.-...||+|+||.||++...+.. ..||||++..
T Consensus 32 y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~ 66 (340)
T PTZ00426 32 FNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEK 66 (340)
T ss_pred cEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEH
Confidence 444578999999999999865432 3499999864
No 79
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=89.68 E-value=0.23 Score=52.22 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=32.4
Q ss_pred CceeccCCCceEEEEEeCC----CCeeEEEEEeecCCcccccCcchhhhhcc
Q 042239 365 LECLGSDYRGVYYRGKLPN----GRQPVAGKRFSSQFLSSQQGLDKRRLLEE 412 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~----g~~~VAVKrl~~~~~~s~~~~~~~eF~~E 412 (413)
+.+||.|-||.||+|+..+ ....||||..+.+ +.... .+.|++|
T Consensus 394 ~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d--~t~d~--tekflqE 441 (974)
T KOG4257|consen 394 KRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTD--CTPDD--TEKFLQE 441 (974)
T ss_pred HHhhcCCcccceeeeEecccccCcceeeeeehhccC--CChhh--HHHHHHH
Confidence 6899999999999999743 2345899988764 23334 5678776
No 80
>PHA02882 putative serine/threonine kinase; Provisional
Probab=89.39 E-value=0.33 Score=46.57 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=23.3
Q ss_pred CCCCceeccCCCceEEEEEeCCC---CeeEEEEEe
Q 042239 362 FSELECLGSDYRGVYYRGKLPNG---RQPVAGKRF 393 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g---~~~VAVKrl 393 (413)
|.-.++||+|+||.||+|...+. ...+|+|..
T Consensus 14 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~ 48 (294)
T PHA02882 14 WKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIE 48 (294)
T ss_pred eEEeeEEecCCCceEEEEEEcCCcccccceEEEec
Confidence 44457899999999999998665 332566643
No 81
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=89.36 E-value=0.32 Score=41.98 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=16.9
Q ss_pred CCCeeEehhHHHHHHHHHHHHHHhhhhhhcccc
Q 042239 298 PEPAHGFLIFIVVSVLALVIFLAMYCISRRQRK 330 (413)
Q Consensus 298 ~~~~~i~i~~~~~~~~~l~~~~~~~~~~rr~~~ 330 (413)
.+.+++++++++++++++++++++|++|+|+|+
T Consensus 47 nknIVIGvVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred CccEEEEEEecccHHHHHHHHHhheeEEEeccc
Confidence 344556666555544444444445555555444
No 82
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=89.36 E-value=0.32 Score=47.79 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=29.8
Q ss_pred cccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 358 ATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 358 AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
..++|.....||+|++|.||+|.....+..+|||++..
T Consensus 13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~ 50 (343)
T cd07851 13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSR 50 (343)
T ss_pred ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEeccc
Confidence 34456556889999999999999866544599999864
No 83
>smart00090 RIO RIO-like kinase.
Probab=89.30 E-value=0.48 Score=44.49 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=26.2
Q ss_pred CceeccCCCceEEEEE--eCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGK--LPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~--L~~g~~~VAVKrl~~~ 396 (413)
...||+|++|.||+|. ..+|.. ||||.+...
T Consensus 33 ~~~Lg~G~~g~Vy~a~~~~~~g~~-vaiK~~~~~ 65 (237)
T smart00090 33 GGCISTGKEANVYHALDFDGSGKE-RAVKIYRTG 65 (237)
T ss_pred CCeeccCcceeEEEEEecCCCCcE-EEEEEEEcC
Confidence 4679999999999998 667777 999998753
No 84
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=89.29 E-value=0.27 Score=46.79 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=26.8
Q ss_pred CCCCCceeccCCCceEEEEEeCC-----CCeeEEEEEeecC
Q 042239 361 AFSELECLGSDYRGVYYRGKLPN-----GRQPVAGKRFSSQ 396 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~~-----g~~~VAVKrl~~~ 396 (413)
.|.-.+.||+|+||.||++...+ ....+|+|++...
T Consensus 13 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~ 53 (293)
T cd05053 13 RLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDD 53 (293)
T ss_pred HeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCC
Confidence 34445789999999999998743 2234999998653
No 85
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=89.19 E-value=0.36 Score=46.29 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=24.6
Q ss_pred ceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 366 ECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 366 ~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
..||+|+||.||++.....+..||||++...
T Consensus 28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~ 58 (292)
T cd06658 28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLR 58 (292)
T ss_pred hcccCCCCeEEEEEEECCCCCEEEEEEEecc
Confidence 6799999999999987543334999998653
No 86
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=89.17 E-value=0.36 Score=47.54 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=27.9
Q ss_pred ccCCCCCceeccCCCceEEEEEeC-CCCeeEEEEEeec
Q 042239 359 TRAFSELECLGSDYRGVYYRGKLP-NGRQPVAGKRFSS 395 (413)
Q Consensus 359 T~~Fs~~~~LG~G~fG~VYkG~L~-~g~~~VAVKrl~~ 395 (413)
.+.|...+.||+|+||.||++... ++.. ||||++..
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~-vavK~~~~ 50 (343)
T cd07880 14 PDRYRDLKQVGSGAYGTVCSALDRRTGAK-VAIKKLYR 50 (343)
T ss_pred ccceEEEEEeeecCCeEEEEEEECCCCcE-EEEEEecc
Confidence 344555678999999999999865 4555 99999854
No 87
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=89.00 E-value=0.47 Score=45.32 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=28.0
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
|.-.+.||+|++|.||++.....+..+|||++...
T Consensus 17 ~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~ 51 (296)
T cd06618 17 LENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRT 51 (296)
T ss_pred heeeeEeeccCCeEEEEEEECCCCeEEEEEEEecc
Confidence 44468999999999999999763444999999753
No 88
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=88.94 E-value=0.39 Score=49.42 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=27.6
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
++.||.|++|.||||++.+|.. ||||.....
T Consensus 122 ~~plasaSigQVh~A~l~~G~~-VaVKv~rp~ 152 (437)
T TIGR01982 122 EKPLAAASIAQVHRARLVDGKE-VAVKVLRPG 152 (437)
T ss_pred CcceeeeehhheEEEEecCCCE-EEEEeeCCC
Confidence 4679999999999999999987 999998653
No 89
>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=88.87 E-value=0.53 Score=44.02 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=26.3
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
|.-...||+|+||.||+|.....+..+|+|++..
T Consensus 11 y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~ 44 (267)
T cd06646 11 YELIQRVGSGTYGDVYKARNLHTGELAAVKIIKL 44 (267)
T ss_pred cchhheeecCCCeEEEEEEECCCCeEEEEEEEec
Confidence 4445789999999999999754444499998853
No 90
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=88.85 E-value=0.48 Score=45.89 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=25.7
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
.+.||+|+||+||+|.....+..+|+|++...
T Consensus 26 ~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~ 57 (313)
T cd06633 26 LHEIGHGSFGAVYFATNSHTNEVVAVKKMSYS 57 (313)
T ss_pred ceeeccCCCeEEEEEEECCCCcEEEEEEEecc
Confidence 46799999999999997554444999998653
No 91
>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl
Probab=88.64 E-value=0.49 Score=45.21 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=27.6
Q ss_pred CCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 361 AFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
+|....+||+|+||.||++........||||++..
T Consensus 13 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~ 47 (310)
T cd07865 13 KYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLM 47 (310)
T ss_pred heEEEEEeecCCCEEEEEEEECCCCcEEEEEEEec
Confidence 35556889999999999999764344499999865
No 92
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=88.52 E-value=0.13 Score=57.64 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=27.6
Q ss_pred cCCCCCceeccCCCceEEEEEeC-CCCeeEEEEEeecC
Q 042239 360 RAFSELECLGSDYRGVYYRGKLP-NGRQPVAGKRFSSQ 396 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~-~g~~~VAVKrl~~~ 396 (413)
+.|-+-.+||+||||.|||..=. ||.. .||||+.-.
T Consensus 479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr~-YAIKKIpl~ 515 (1351)
T KOG1035|consen 479 NDFEELELLGKGGFGSVVKVRNKLDGRE-YAIKKIPLK 515 (1351)
T ss_pred hhhHHHHHhcCCCCceEEEEeecccchh-hhhhhccCc
Confidence 44655679999999999998743 4554 999999653
No 93
>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto
Probab=88.45 E-value=0.24 Score=48.82 Aligned_cols=31 Identities=23% Similarity=0.082 Sum_probs=24.2
Q ss_pred CceeccCCCceEEEEEeCC------CCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPN------GRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~------g~~~VAVKrl~~~ 396 (413)
.++||+|+||.||+|...+ +.. ||+|++...
T Consensus 12 ~~~lG~G~fg~Vy~a~~~~~~~~~~~~~-va~K~~~~~ 48 (337)
T cd05054 12 GKPLGRGAFGKVIQASAFGIEKSASCRT-VAVKMLKEG 48 (337)
T ss_pred hcccccCcCceEEeccccccccccccce-eeeeeccCC
Confidence 5789999999999997532 234 999998653
No 94
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=88.32 E-value=0.24 Score=52.10 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=34.5
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecCCcccccCcchhhhhcc
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQFLSSQQGLDKRRLLEE 412 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~~~~s~~~~~~~eF~~E 412 (413)
+++||-|-||.||.|+.+.-...||||.|+.+ ... ..||+.|
T Consensus 272 khKLGGGQYGeVYeGvWKkyslTvAVKtLKED---tMe---veEFLkE 313 (1157)
T KOG4278|consen 272 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED---TME---VEEFLKE 313 (1157)
T ss_pred eeccCCCcccceeeeeeeccceeeehhhhhhc---chh---HHHHHHH
Confidence 68999999999999999775555999999886 332 5788876
No 95
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.16 E-value=0.2 Score=52.34 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=26.6
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
|.+-+.||.|+||.||-+.-.-....|||||++-.
T Consensus 28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsyS 62 (948)
T KOG0577|consen 28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYS 62 (948)
T ss_pred HHHHHHhcCCccceeEEeeccCccceeeeeecccc
Confidence 45557799999999998875333334999999775
No 96
>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10. Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing
Probab=88.01 E-value=0.57 Score=45.07 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=27.5
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEee
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFS 394 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~ 394 (413)
.+|...++||+|+||.||+|.....+..||+|++.
T Consensus 7 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~ 41 (309)
T cd07845 7 TEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVR 41 (309)
T ss_pred cceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEE
Confidence 34556688999999999999985533349999985
No 97
>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=87.93 E-value=0.45 Score=44.92 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=25.6
Q ss_pred CCCceeccCCCceEEEEEeCC-CC---eeEEEEEeecC
Q 042239 363 SELECLGSDYRGVYYRGKLPN-GR---QPVAGKRFSSQ 396 (413)
Q Consensus 363 s~~~~LG~G~fG~VYkG~L~~-g~---~~VAVKrl~~~ 396 (413)
.-.++||+|+||.||+|...+ +. ..+|+|++...
T Consensus 10 ~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~ 47 (279)
T cd05057 10 EKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREE 47 (279)
T ss_pred EEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCC
Confidence 335789999999999999754 22 24899988664
No 98
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=87.83 E-value=0.47 Score=49.60 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=28.2
Q ss_pred CCCCceeccCCCceEEEEEe-CCCCeeEEEEEeec
Q 042239 362 FSELECLGSDYRGVYYRGKL-PNGRQPVAGKRFSS 395 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L-~~g~~~VAVKrl~~ 395 (413)
+...++||+|||..||+++- ..|.. ||+|.+..
T Consensus 20 Y~~g~~LGkGgFA~cYe~~~~~tge~-~A~KvVpk 53 (592)
T KOG0575|consen 20 YKRGRFLGKGGFARCYEARDLDTGEV-VAVKVVPK 53 (592)
T ss_pred eeeeeeeccCcceEEEEEEEcCCCcE-EEEEEeeh
Confidence 55578999999999999987 66777 99999965
No 99
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=87.57 E-value=0.44 Score=45.84 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=25.6
Q ss_pred CCCCceeccCCCceEEEEEeCC-CCe---eEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPN-GRQ---PVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~-g~~---~VAVKrl~~~ 396 (413)
|...++||+|+||.||+|.... +.. .+|+|.+...
T Consensus 9 ~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~ 47 (303)
T cd05110 9 LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNET 47 (303)
T ss_pred ceeccccccCCCccEEEEEEecCCCcceeeEEEEecccc
Confidence 4445789999999999998643 331 3788888653
No 100
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=87.41 E-value=0.42 Score=46.02 Aligned_cols=37 Identities=19% Similarity=0.074 Sum_probs=27.0
Q ss_pred cCCCCCceeccCCCceEEEEEeC-----CCCeeEEEEEeecC
Q 042239 360 RAFSELECLGSDYRGVYYRGKLP-----NGRQPVAGKRFSSQ 396 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~-----~g~~~VAVKrl~~~ 396 (413)
++|.-.++||+|+||.||++..- .....||||+++..
T Consensus 35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~ 76 (302)
T cd05055 35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPT 76 (302)
T ss_pred HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCcc
Confidence 34666789999999999998741 11224999998653
No 101
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=87.29 E-value=0.39 Score=46.37 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=27.3
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
|+..+.||+|+||.||+|.....+..+|+|++..
T Consensus 17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~ 50 (308)
T cd06634 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSY 50 (308)
T ss_pred HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEec
Confidence 5556789999999999999765444499999864
No 102
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.28 E-value=0.62 Score=49.42 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=30.4
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
.+|.=..+||+|.||+|+.+.+.......|||.|+.+
T Consensus 368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~ 404 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKG 404 (694)
T ss_pred cceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeecc
Confidence 3454467999999999999999776666999999875
No 103
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=87.23 E-value=0.3 Score=50.02 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=27.1
Q ss_pred CCCCceeccCCCceEEEEEe-CCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKL-PNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L-~~g~~~VAVKrl~~~ 396 (413)
|..-.+||+|.||.|||+.- ..|.+ ||+||+.-+
T Consensus 119 feki~kIGeGTyg~VYkAr~~~tgki-vALKKvr~d 153 (560)
T KOG0600|consen 119 FEKIEKIGEGTYGQVYKARDLETGKI-VALKKVRFD 153 (560)
T ss_pred HHHHHHhcCcchhheeEeeecccCcE-EEEEEeecc
Confidence 44447899999999999974 55666 999999764
No 104
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=86.92 E-value=0.5 Score=44.80 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=24.4
Q ss_pred CCCCceeccCCCceEEEEEeC-CCCe---eEEEEEeec
Q 042239 362 FSELECLGSDYRGVYYRGKLP-NGRQ---PVAGKRFSS 395 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~-~g~~---~VAVKrl~~ 395 (413)
|...+.||+|+||.||+|... ++.. .+++|++..
T Consensus 9 ~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~ 46 (279)
T cd05111 9 LRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQD 46 (279)
T ss_pred ceeccccCccCCcceEEEEEcCCCCceeeEEEEeeccc
Confidence 333578999999999999873 3332 377888754
No 105
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=86.29 E-value=0.67 Score=45.71 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=27.9
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
+.|.....||+|+||.||++.-...+..||||++..
T Consensus 16 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~ 51 (353)
T cd07850 16 KRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSR 51 (353)
T ss_pred cceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCc
Confidence 446556889999999999998754333499999864
No 106
>PHA03209 serine/threonine kinase US3; Provisional
Probab=86.20 E-value=0.78 Score=45.46 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=28.8
Q ss_pred ccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 359 TRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 359 T~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
..+|.....||+|+||.||+|........||+|....
T Consensus 65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~ 101 (357)
T PHA03209 65 SLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK 101 (357)
T ss_pred hcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCc
Confidence 3457667899999999999999876555589987543
No 107
>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.12 E-value=0.21 Score=50.80 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=24.9
Q ss_pred CceeccCCCceEEEEEeC-CCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLP-NGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~-~g~~~VAVKrl~~~ 396 (413)
.++||.|.||.||+|+-. .+.. ||||++++.
T Consensus 15 i~klGDGTfGsV~la~~~~~~~~-VAIK~MK~K 46 (538)
T KOG0661|consen 15 IRKLGDGTFGSVYLAKSKETGEL-VAIKKMKKK 46 (538)
T ss_pred HHHhcCCcceeEEEeeecCCCce-eeHHHHHhh
Confidence 367999999999999864 4555 999998654
No 108
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=85.89 E-value=0.22 Score=47.57 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=25.6
Q ss_pred CceeccCCCceEEEEE-eCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGK-LPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~-L~~g~~~VAVKrl~~~ 396 (413)
..+||+|.||.|||.. +.+|.. ||.|+++-+
T Consensus 24 l~~IG~GsFg~vykv~~~~~g~l-~a~K~i~f~ 55 (375)
T KOG0591|consen 24 LKKIGRGSFGEVYKVQCLLDGKL-VALKKIQFG 55 (375)
T ss_pred HHHHcCCcchheEEeeeccCcch-hhhhhcchh
Confidence 4679999999999975 567777 999999743
No 109
>PTZ00024 cyclin-dependent protein kinase; Provisional
Probab=85.87 E-value=0.84 Score=44.48 Aligned_cols=31 Identities=19% Similarity=-0.006 Sum_probs=24.7
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
.++||+|+||.||++.....+..||||++..
T Consensus 14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~ 44 (335)
T PTZ00024 14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKI 44 (335)
T ss_pred hhcccCCCceeEEEEEECCCCCeEEEEEeec
Confidence 4679999999999999764344499998853
No 110
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=85.70 E-value=0.61 Score=48.14 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=31.0
Q ss_pred cccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 358 ATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 358 AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
..+.|.--.+||+|+||.||-+.-.+-+..+|+|+|+..
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS 177 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKS 177 (550)
T ss_pred CcccchhheeeccccceeEEEEEEccCCcEEeeecccHH
Confidence 445566667999999999999988765555999999764
No 111
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=85.47 E-value=0.24 Score=41.37 Aligned_cols=31 Identities=29% Similarity=0.201 Sum_probs=27.3
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
.+-|+.|+.|.||+|+|++|.. ||||.....
T Consensus 16 ~~PlasASiaQVh~a~l~~g~~-VaVKV~rP~ 46 (119)
T PF03109_consen 16 PEPLASASIAQVHRARLKDGEE-VAVKVQRPG 46 (119)
T ss_pred cchhhheehhhheeeeecccch-hhhhhcchH
Confidence 4679999999999999999887 999988654
No 112
>PHA03211 serine/threonine kinase US3; Provisional
Probab=85.45 E-value=0.74 Score=47.72 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=27.4
Q ss_pred CCCCCceeccCCCceEEEEEeCCCCeeEEEEEee
Q 042239 361 AFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFS 394 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~ 394 (413)
+|.-..+||+|+||.||++..+.....||||+..
T Consensus 170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~ 203 (461)
T PHA03211 170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW 203 (461)
T ss_pred CeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc
Confidence 4656678999999999999987655559999754
No 113
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=85.07 E-value=0.65 Score=45.36 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=27.6
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEee
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFS 394 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~ 394 (413)
+.|.-.++||+|+||.||+|.....+..+|||++.
T Consensus 7 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~ 41 (337)
T cd07852 7 RKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIF 41 (337)
T ss_pred hHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeec
Confidence 34555688999999999999986544449999883
No 114
>PHA03212 serine/threonine kinase US3; Provisional
Probab=84.90 E-value=0.78 Score=46.31 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=27.5
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
++|.-..+||+|+||.||++.-......||+|+...
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~ 127 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR 127 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh
Confidence 346566889999999999998754444499998654
No 115
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=84.56 E-value=0.95 Score=45.72 Aligned_cols=32 Identities=25% Similarity=0.191 Sum_probs=26.6
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
..+||+|.||.||+++-+..+..+|+|.+...
T Consensus 40 ~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~ 71 (382)
T KOG0032|consen 40 GRELGRGQFGVVYLCREKSTGKEVACKVIPKR 71 (382)
T ss_pred hhhhCCCCceEEEEEEecCCCceeEEEEeehh
Confidence 37899999999999998774444999999764
No 116
>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins. Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic
Probab=84.42 E-value=0.98 Score=43.11 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=27.2
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEee
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFS 394 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~ 394 (413)
++|.-.++||+|++|.||++.....+..+|||++.
T Consensus 8 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~ 42 (311)
T cd07866 8 RDYEILGKLGEGTFGEVYKARQIKTGRVVALKKIL 42 (311)
T ss_pred ccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEE
Confidence 45555678999999999999975433349999884
No 117
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=84.29 E-value=2.9 Score=44.17 Aligned_cols=36 Identities=11% Similarity=0.004 Sum_probs=26.1
Q ss_pred ecccccccccCCCCCceeccCCCceEEEEEeCCCCe
Q 042239 351 TLSEISVATRAFSELECLGSDYRGVYYRGKLPNGRQ 386 (413)
Q Consensus 351 s~~eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~ 386 (413)
++.........+...++||+|+||.||+|...+...
T Consensus 324 ~~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~ 359 (535)
T PRK09605 324 TWIKEEEVKRRKIPDHLIGKGAEADIKKGEYLGRDA 359 (535)
T ss_pred eeccccccccccCccceeccCCcEEEEEEeecCccc
Confidence 344444445555668999999999999999866543
No 118
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=84.21 E-value=0.89 Score=44.55 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=27.7
Q ss_pred CCCCceeccCCCceEEEEEeCC-CCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPN-GRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~-g~~~VAVKrl~~~ 396 (413)
+...+.||+|.||+||.+...+ |.. .|||.+...
T Consensus 19 ~~~~~~lG~Gs~G~V~l~~~~~~g~~-~AvK~v~~~ 53 (313)
T KOG0198|consen 19 WSKGKLLGRGSFGSVYLATNKKTGEL-MAVKSVELE 53 (313)
T ss_pred hhhhccccCccceEEEEEEecCCCcc-eeeeeeecc
Confidence 4446889999999999999865 555 999998663
No 119
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=83.76 E-value=0.78 Score=43.98 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=24.7
Q ss_pred CCCCceeccCCCceEEEEEeC--------CCCeeEEEEEeec
Q 042239 362 FSELECLGSDYRGVYYRGKLP--------NGRQPVAGKRFSS 395 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~--------~g~~~VAVKrl~~ 395 (413)
|.-...||+|+||.||++... ++.. ||+|.+..
T Consensus 17 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~-v~iK~~~~ 57 (304)
T cd05101 17 LTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVT-VAVKMLKD 57 (304)
T ss_pred eeecceeeccCCceEEEEEEeccCCCCCCccee-EEeeeccc
Confidence 444688999999999999741 1224 99999865
No 120
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=83.42 E-value=0.81 Score=45.37 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=21.2
Q ss_pred eeeeecCCccceEeEEeeEEeeCCCCC
Q 042239 240 GFSASTGNMTQIHNLLSWNFSSISQPF 266 (413)
Q Consensus 240 GFsasTG~~~~~h~I~sWsf~~~~~~~ 266 (413)
-|..+++..+..+..++|++..-+-.|
T Consensus 284 SFG~~gDgfY~~t~ylsWt~~~G~G~P 310 (350)
T PF15065_consen 284 SFGTSGDGFYWATNYLSWTFLIGYGSP 310 (350)
T ss_pred EeccCCCCcccccceEEEEEecccCCC
Confidence 566777778999999999998865443
No 121
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=83.19 E-value=0.35 Score=51.44 Aligned_cols=34 Identities=38% Similarity=0.507 Sum_probs=27.4
Q ss_pred CCCCceeccCCCceEEEEEe-CCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKL-PNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L-~~g~~~VAVKrl~~~ 396 (413)
+-.+..||+|+||.||+|.- ..|.. ||||.++..
T Consensus 15 W~~~e~LG~Ga~g~V~rgrnketG~~-vAvK~~~~~ 49 (732)
T KOG4250|consen 15 WEMDERLGKGAFGNVYRGRNKETGRL-VAVKTFNKE 49 (732)
T ss_pred eeehhhhcCCccceeeeecccccccc-hhHHhhhhh
Confidence 33467899999999999994 55666 999998764
No 122
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=83.02 E-value=1.1 Score=43.08 Aligned_cols=34 Identities=21% Similarity=0.059 Sum_probs=24.8
Q ss_pred CCCCceeccCCCceEEEEEeCC--------CCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPN--------GRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~--------g~~~VAVKrl~~~ 396 (413)
+.-.+.||+|+||.||++...+ ... +|+|.+...
T Consensus 20 ~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~-~aiK~~~~~ 61 (307)
T cd05098 20 LVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTK-VAVKMLKSD 61 (307)
T ss_pred eEEeeeeccCCCeeEEEeEEeccCCcccCccce-EEEEeccCC
Confidence 3335789999999999987422 224 999998753
No 123
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=82.61 E-value=0.94 Score=43.74 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=24.7
Q ss_pred CCCCceeccCCCceEEEEEeC-------CCCeeEEEEEeec
Q 042239 362 FSELECLGSDYRGVYYRGKLP-------NGRQPVAGKRFSS 395 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~-------~g~~~VAVKrl~~ 395 (413)
|.-.++||+|+||.||++.-. .....+|+|+++.
T Consensus 14 ~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~ 54 (314)
T cd05099 14 LVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKD 54 (314)
T ss_pred eeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCC
Confidence 334688999999999998641 2223489999865
No 124
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=82.13 E-value=1.4 Score=49.73 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=28.2
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
+.|.-..+||+|+||+||++........+|+|.+..
T Consensus 13 ~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~ 48 (1021)
T PTZ00266 13 NEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISY 48 (1021)
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEec
Confidence 344445789999999999999866555599998865
No 125
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=81.82 E-value=1.4 Score=43.60 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=26.4
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
-++||+|..|+|||......+..+|.|.+..
T Consensus 84 ~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~ 114 (364)
T KOG0581|consen 84 LGVLGSGNGGTVYKVRHKPTGKIYALKVILL 114 (364)
T ss_pred hhhcccCCCcEEEEEEEcCCCeEEEEEeecc
Confidence 3789999999999999976666699999944
No 126
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=81.67 E-value=1.6 Score=45.95 Aligned_cols=32 Identities=25% Similarity=0.165 Sum_probs=26.2
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
..+||+|.||.|-|+.=..-++.||||.++..
T Consensus 191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~ 222 (586)
T KOG0667|consen 191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK 222 (586)
T ss_pred EEEecccccceeEEEEecCCCcEEEEEeeccC
Confidence 47899999999999986553445999999764
No 127
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=81.45 E-value=1.2 Score=35.76 Aligned_cols=30 Identities=17% Similarity=0.085 Sum_probs=13.3
Q ss_pred CCeeEehhHHHHHHHHHHHHHHhhhhhhcc
Q 042239 299 EPAHGFLIFIVVSVLALVIFLAMYCISRRQ 328 (413)
Q Consensus 299 ~~~~i~i~~~~~~~~~l~~~~~~~~~~rr~ 328 (413)
...++++.+++.+++.++++++.|++.+|+
T Consensus 65 ~gaiagi~vg~~~~v~~lv~~l~w~f~~r~ 94 (96)
T PTZ00382 65 TGAIAGISVAVVAVVGGLVGFLCWWFVCRG 94 (96)
T ss_pred cccEEEEEeehhhHHHHHHHHHhheeEEee
Confidence 344455444444333334444445544443
No 128
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=81.45 E-value=1.3 Score=37.16 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=3.9
Q ss_pred HHhhhhhhccc
Q 042239 319 LAMYCISRRQR 329 (413)
Q Consensus 319 ~~~~~~~rr~~ 329 (413)
+++|+.+|++|
T Consensus 83 li~y~irR~~K 93 (122)
T PF01102_consen 83 LISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHS-
T ss_pred HHHHHHHHHhc
Confidence 33333343333
No 129
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=81.31 E-value=1.5 Score=46.30 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=28.7
Q ss_pred CCCCCceeccCCCceEEEEEeCC-CCeeEEEEEeecC
Q 042239 361 AFSELECLGSDYRGVYYRGKLPN-GRQPVAGKRFSSQ 396 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~~-g~~~VAVKrl~~~ 396 (413)
.|++ .-||.|++|.||++.+++ |.. ||||.+...
T Consensus 121 ~fd~-~PlasaSiaQVh~A~l~~~G~~-VAVKV~rP~ 155 (537)
T PRK04750 121 DFDI-KPLASASIAQVHFARLKDNGRE-VVVKVLRPD 155 (537)
T ss_pred hcCh-hhhcCCCccEEEEEEECCCCCE-EEEEEeCcc
Confidence 4654 689999999999999988 776 999999753
No 130
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=80.59 E-value=0.29 Score=47.09 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=26.7
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
|+--.+||+|+||.|||+.-+..+..||||++-.+
T Consensus 35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~ 69 (502)
T KOG0574|consen 35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD 69 (502)
T ss_pred HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc
Confidence 33346899999999999987554444999998654
No 131
>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=80.46 E-value=0.98 Score=42.15 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 361 AFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
+|.-..+||+|+||.||++.....+..+|+|.++.
T Consensus 10 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~ 44 (267)
T cd06645 10 DFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKL 44 (267)
T ss_pred HHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEec
Confidence 34445789999999999998755444499998753
No 132
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=79.95 E-value=1.6 Score=42.66 Aligned_cols=31 Identities=19% Similarity=0.041 Sum_probs=22.9
Q ss_pred CceeccCCCceEEEEEeCC-------CCeeEEEEEeec
Q 042239 365 LECLGSDYRGVYYRGKLPN-------GRQPVAGKRFSS 395 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~-------g~~~VAVKrl~~ 395 (413)
...||+|+||.||++.-.. ....||+|.+..
T Consensus 17 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~ 54 (334)
T cd05100 17 GKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKD 54 (334)
T ss_pred cceeccccCCcEEEEEEeccCCccCCcceeEEEEEccc
Confidence 5789999999999986321 122389998865
No 133
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=79.55 E-value=1.9 Score=41.42 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=25.2
Q ss_pred CCCCceeccCCCceEEEEEeCC-CC-eeEEEEEeec
Q 042239 362 FSELECLGSDYRGVYYRGKLPN-GR-QPVAGKRFSS 395 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~-g~-~~VAVKrl~~ 395 (413)
|.-.++||+|+||.||++.... +. ..+|+|+++.
T Consensus 9 ~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~ 44 (303)
T cd05088 9 IKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKE 44 (303)
T ss_pred ceeeeeecCCCCceEEEEEEccCCceeeEEEEEecc
Confidence 4446789999999999998743 32 2478888753
No 134
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=78.22 E-value=0.74 Score=35.10 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=13.1
Q ss_pred eeecccccccccCCCCC
Q 042239 349 RFTLSEISVATRAFSEL 365 (413)
Q Consensus 349 ~fs~~eL~~AT~~Fs~~ 365 (413)
..+|+|-.+|...|..+
T Consensus 56 P~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 56 PHTYEDPNQAVREFAKE 72 (75)
T ss_dssp GGGSSSHHHHHHHCSSB
T ss_pred cccccCHHHHHHHHHhh
Confidence 46899999888888643
No 135
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=78.02 E-value=2 Score=44.49 Aligned_cols=31 Identities=10% Similarity=0.070 Sum_probs=23.6
Q ss_pred CceeccCCCceEEEEEeCCC-CeeEEEEEeec
Q 042239 365 LECLGSDYRGVYYRGKLPNG-RQPVAGKRFSS 395 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g-~~~VAVKrl~~ 395 (413)
.++||+|+||.||++.-... ...||+|++..
T Consensus 72 ~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~ 103 (478)
T PTZ00267 72 TTLVGRNPTTAAFVATRGSDPKEKVVAKFVML 103 (478)
T ss_pred EEEEEeCCCcEEEEEEEcCCCCeEEEEEEccc
Confidence 57899999999999976443 33488887754
No 136
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=77.48 E-value=0.55 Score=47.01 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=31.0
Q ss_pred ccCCCCCceeccCCCceEEEEEeCC---CCeeEEEEEeecC
Q 042239 359 TRAFSELECLGSDYRGVYYRGKLPN---GRQPVAGKRFSSQ 396 (413)
Q Consensus 359 T~~Fs~~~~LG~G~fG~VYkG~L~~---g~~~VAVKrl~~~ 396 (413)
-+.+...++||.|.|++||++++.. ....||+|.+...
T Consensus 35 ~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~t 75 (418)
T KOG1167|consen 35 SNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRT 75 (418)
T ss_pred hhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccc
Confidence 3456778999999999999999865 4556999999765
No 137
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=76.09 E-value=2.5 Score=39.78 Aligned_cols=42 Identities=31% Similarity=0.348 Sum_probs=30.0
Q ss_pred ccccccccCCCCCceeccCCCceEEEEEe-CCCCeeEEEEEeecC
Q 042239 353 SEISVATRAFSELECLGSDYRGVYYRGKL-PNGRQPVAGKRFSSQ 396 (413)
Q Consensus 353 ~eL~~AT~~Fs~~~~LG~G~fG~VYkG~L-~~g~~~VAVKrl~~~ 396 (413)
+++..+.+ +.--++||.|+||.+|.|.- .+|.. ||||.-+..
T Consensus 9 ~~~iv~gk-y~lvrkiGsGSFGdIy~~~~i~~ge~-VAiK~Es~~ 51 (341)
T KOG1163|consen 9 EELIVGGK-YKLVRKIGSGSFGDIYLGISITSGEE-VAIKLESSK 51 (341)
T ss_pred hhheeccc-eEEEEeecCCchhheeeeeeccCCce-EEEEeeccc
Confidence 44444432 33457899999999999874 66766 999987553
No 138
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=75.54 E-value=0.63 Score=46.53 Aligned_cols=43 Identities=23% Similarity=0.155 Sum_probs=28.2
Q ss_pred cccccccCCCCCceeccCCCceEEEEEeCCC-----CeeEEEEEeecC
Q 042239 354 EISVATRAFSELECLGSDYRGVYYRGKLPNG-----RQPVAGKRFSSQ 396 (413)
Q Consensus 354 eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g-----~~~VAVKrl~~~ 396 (413)
||..--..|.-+.++-+|.||.||+|.+.+. .++|-||.++..
T Consensus 278 ~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~ 325 (563)
T KOG1024|consen 278 ELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQH 325 (563)
T ss_pred hhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhc
Confidence 3333333455677888999999999977542 223777777553
No 139
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=75.07 E-value=2 Score=42.26 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=29.4
Q ss_pred ccccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 355 ISVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 355 L~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
.......+..-..||+|.+|.|.+++-...+..|||||+.+
T Consensus 17 ~~~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~ 57 (359)
T KOG0660|consen 17 LFEIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILN 57 (359)
T ss_pred EEeccceecccccccCcceeeEEEEEEcCCCCEeehhhhhh
Confidence 33344445445779999999999998744334499999974
No 140
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=73.97 E-value=3 Score=44.87 Aligned_cols=43 Identities=26% Similarity=0.202 Sum_probs=29.8
Q ss_pred ceeccCCCceEEEEEeCC-------CCeeEEEEEeecCCcccccCcchhhhhcc
Q 042239 366 ECLGSDYRGVYYRGKLPN-------GRQPVAGKRFSSQFLSSQQGLDKRRLLEE 412 (413)
Q Consensus 366 ~~LG~G~fG~VYkG~L~~-------g~~~VAVKrl~~~~~~s~~~~~~~eF~~E 412 (413)
..||+|.||.|+||.+.. ....||||+++... .... .+.|..|
T Consensus 302 ~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~--~~~~--~~~~~~E 351 (609)
T KOG0200|consen 302 KYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENA--SSSE--KKDLMSE 351 (609)
T ss_pred ceeecccccceEeEEEeecccccccceEEEEEEeccccc--CcHH--HHHHHHH
Confidence 499999999999998732 13459999998651 1222 4556555
No 141
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=71.43 E-value=2.2 Score=42.14 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 361 AFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
.|.--++||+|+||.||...-.+-+...|+|.++..
T Consensus 26 dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~ 61 (357)
T KOG0598|consen 26 DFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKK 61 (357)
T ss_pred heeeeeeeeccCCceEEEEEEcccCceeehhhhhhh
Confidence 455568999999999998776665444999998653
No 142
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=71.38 E-value=3 Score=46.83 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=28.3
Q ss_pred CCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 361 AFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
.|.=+..||+|+||.||+|.-.+|.. ||+|.-+.
T Consensus 699 ~~~I~~e~G~g~y~~vy~a~~~~~~~-~alK~e~P 732 (974)
T KOG1166|consen 699 KFCISKEIGEGSYGSVYVATHSNGKL-VALKVEKP 732 (974)
T ss_pred eEEEEeeeccccceEEEEeecCCCcE-EEEEeecC
Confidence 34446889999999999999988888 99997544
No 143
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=71.33 E-value=3.3 Score=45.06 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=26.0
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
+++|-+|||+.||-+....+...+|+||+-.
T Consensus 42 ~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~ 72 (738)
T KOG1989|consen 42 EKVLAEGGFAQVYLAQDVKGGKKYALKRMYV 72 (738)
T ss_pred EEEEccCCcEEEEEEEecCCCceeeeeeeec
Confidence 5889999999999999977733499999854
No 144
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.27 E-value=3.1 Score=44.77 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=25.8
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
.-+||+|.+|+||-|.-.+.++.+|||-+-.
T Consensus 580 rvVLGKGTYG~VYA~RD~~tqvrIaIKEIpe 610 (1226)
T KOG4279|consen 580 RVVLGKGTYGTVYAARDMDTQVRIAIKEIPE 610 (1226)
T ss_pred eEEeecCceeEEEeeccccceeEEEeeeccc
Confidence 4689999999999998766666699999854
No 145
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=70.79 E-value=0.98 Score=45.99 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=28.6
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
+.|..-++||+||||.||-....+.+...|.|+|..
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~K 220 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDK 220 (591)
T ss_pred cceeeeEEEecccccceeEEEEecchhhHHHHHHHH
Confidence 347778999999999999988876444389888854
No 146
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=69.91 E-value=1.3 Score=48.07 Aligned_cols=33 Identities=42% Similarity=0.550 Sum_probs=26.7
Q ss_pred CCCCCceeccCCCc-eEEEEEeCCCCeeEEEEEeec
Q 042239 361 AFSELECLGSDYRG-VYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG-~VYkG~L~~g~~~VAVKrl~~ 395 (413)
-|+.+.++|.|.-| .||+|...+ +. |||||+-.
T Consensus 510 ~~~~~eilG~Gs~Gt~Vf~G~ye~-R~-VAVKrll~ 543 (903)
T KOG1027|consen 510 FFSPKEILGYGSNGTVVFRGVYEG-RE-VAVKRLLE 543 (903)
T ss_pred eeccHHHcccCCCCcEEEEEeeCC-ce-ehHHHHhh
Confidence 36778899999988 689999954 45 99999854
No 147
>PF15102 TMEM154: TMEM154 protein family
Probab=67.50 E-value=4.3 Score=34.93 Aligned_cols=6 Identities=33% Similarity=0.611 Sum_probs=2.2
Q ss_pred hhhccc
Q 042239 324 ISRRQR 329 (413)
Q Consensus 324 ~~rr~~ 329 (413)
++||||
T Consensus 81 ~~kRkr 86 (146)
T PF15102_consen 81 YYKRKR 86 (146)
T ss_pred EEeecc
Confidence 333333
No 148
>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=66.98 E-value=5.8 Score=38.78 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=26.1
Q ss_pred CCCCCceeccCCCceEEEEEeCCCC-eeEEEEEeec
Q 042239 361 AFSELECLGSDYRGVYYRGKLPNGR-QPVAGKRFSS 395 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~~g~-~~VAVKrl~~ 395 (413)
.|.-..+||+|+||.||++.-.... ..+|+|....
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~ 54 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKK 54 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEe
Confidence 4555789999999999999865542 3378877654
No 149
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=66.59 E-value=3.5 Score=39.42 Aligned_cols=31 Identities=6% Similarity=-0.049 Sum_probs=15.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEecCC
Q 042239 102 SFETTFSFQFNTSNNTRTSRDGGSSLTFIIVPDE 135 (413)
Q Consensus 102 sF~t~F~f~i~~~~~~~~~~~~gdGlaF~l~~~~ 135 (413)
++.....|.|...-- ......-+++|.+.-+
T Consensus 62 G~~~~~eF~IP~gv~---~~P~v~Rl~lVyqnlG 92 (278)
T PF06697_consen 62 GVNNFSEFHIPPGVV---VQPYVERLVLVYQNLG 92 (278)
T ss_pred cccccceeecCCcce---ecCcceEEEEEEeccC
Confidence 454445666653310 1223456666666543
No 150
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=66.51 E-value=3 Score=39.36 Aligned_cols=31 Identities=23% Similarity=0.097 Sum_probs=25.5
Q ss_pred CceeccCCCceEEEEE-eCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGK-LPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~-L~~g~~~VAVKrl~~~ 396 (413)
.+.||+|||..||-+. +.++.. .|+||+...
T Consensus 26 ~~~LgeGGfsfv~LV~~~s~~~~-YAlKkI~c~ 57 (302)
T KOG2345|consen 26 QRLLGEGGFSFVDLVKGLSTGHL-YALKKILCH 57 (302)
T ss_pred eeeecCCCceeeeeecccCcccc-hhhheeecc
Confidence 4689999999999776 556666 999999775
No 151
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=66.08 E-value=5.2 Score=37.55 Aligned_cols=28 Identities=14% Similarity=-0.094 Sum_probs=22.6
Q ss_pred eccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 368 LGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 368 LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
||+|+||.||++.-...+..+|+|.+..
T Consensus 24 lg~g~~g~v~~~~~~~~~~~~~~k~~~~ 51 (267)
T PHA03390 24 LIDGKFGKVSVLKHKPTQKLFVQKIIKA 51 (267)
T ss_pred ecCCCceEEEEEEEcCCCcEEEEEEEeh
Confidence 6999999999998755444489998865
No 152
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=65.34 E-value=5.5 Score=40.59 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=25.3
Q ss_pred CceeccCCCceEEEEEe-CCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKL-PNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L-~~g~~~VAVKrl~~~ 396 (413)
..+||.|..++||+|.- |-+.. ||||++.-+
T Consensus 31 ~e~IG~G~sa~V~~A~c~p~~e~-VAIK~inLE 62 (516)
T KOG0582|consen 31 QEVIGVGASAVVYLARCIPTNEV-VAIKIINLE 62 (516)
T ss_pred EEEEeccceeEeeeeeecccCCE-EEEEEeehh
Confidence 36899999999999976 55555 999999764
No 153
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.37 E-value=7.9 Score=38.92 Aligned_cols=34 Identities=26% Similarity=0.180 Sum_probs=25.9
Q ss_pred CCCCCceeccCCCceEEEEEeC-CCCeeEEEEEeec
Q 042239 361 AFSELECLGSDYRGVYYRGKLP-NGRQPVAGKRFSS 395 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L~-~g~~~VAVKrl~~ 395 (413)
.+.-...||+|.||+||.|.-. .+.. ||||.+.+
T Consensus 18 ~y~~~~~lG~GsfgkV~~a~~~~t~~~-vAiKii~~ 52 (370)
T KOG0583|consen 18 KYELGRTLGSGSFGKVKLAKHRLTGEK-VAIKIIDR 52 (370)
T ss_pred ceeeeeeecCCCCeeEEEeeeccCCCe-EEEEEech
Confidence 3444678999999999999764 4555 99996655
No 154
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=63.71 E-value=7.5 Score=39.28 Aligned_cols=31 Identities=23% Similarity=0.090 Sum_probs=24.8
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
.+.||+|+||.|-.|+=...+..||||.++.
T Consensus 177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~k 207 (475)
T KOG0615|consen 177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINK 207 (475)
T ss_pred eeeecCCceeEEEEEEEcccCcEEEeeeeeh
Confidence 4679999999999998754333499999965
No 155
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=62.75 E-value=5.2 Score=42.03 Aligned_cols=31 Identities=26% Similarity=0.127 Sum_probs=27.4
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
++-|+.++-|.||+|+|++|.. ||||....+
T Consensus 130 ~~PiAsASIaQVH~A~L~sG~~-VAVKVqrPg 160 (517)
T COG0661 130 PEPIASASIAQVHRAVLKSGEE-VAVKVQRPG 160 (517)
T ss_pred CCchhhhhHhhheeEEecCCCE-EEEEecCCC
Confidence 4678999999999999999888 999998764
No 156
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=61.50 E-value=20 Score=27.62 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCcceeEEcCCCCCCCCcCcccCeEEecceEEeC
Q 042239 7 YCFFLLVSIEVFSILVDSSPEISARKHVFFPDFSLHNNSKILHDLKLLGSAKLSN 61 (413)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~f~~~~~~~~~~~l~l~G~A~~~~ 61 (413)
+|.|-||.+.|..+|++||--...++..--|+-..+ . ++.+.+++.+++.
T Consensus 5 lwiLslLAVtLtVALAAPsQKsKRSVtveqPsts~n--~---dntT~~~~vtlsq 54 (100)
T PF05984_consen 5 LWILSLLAVTLTVALAAPSQKSKRSVTVEQPSTSTN--G---DNTTPSKNVTLSQ 54 (100)
T ss_pred hHHHHHHHHHHHHHhhccccccccceeecCCccccC--C---CCcccCcceEEcC
Confidence 566777778888888886544444566666666552 1 5788888877764
No 157
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.24 E-value=7.7 Score=40.48 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=25.7
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
|..-.+||+|..|.||-+.-.....+||||++..
T Consensus 275 y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l 308 (550)
T KOG0578|consen 275 YTDFKKIGQGATGGVYVARKISTKQEVAIKRMDL 308 (550)
T ss_pred hcchhhhccccccceeeeeeccCCceEEEEEEEe
Confidence 3334689999999999886544334499999976
No 158
>smart00282 LamG Laminin G domain.
Probab=61.12 E-value=90 Score=25.67 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=20.9
Q ss_pred cccCCCCeEEEEEEEeCCCcEEEEEEE
Q 042239 199 IFLNDGSVHRAWIAYDGTRGWMDVRIG 225 (413)
Q Consensus 199 ~~l~~g~~~~v~I~Y~~~~~~L~V~l~ 225 (413)
..++||++|++.|.++. +.+.++++
T Consensus 57 ~~~~dg~WH~v~i~~~~--~~~~l~VD 81 (135)
T smart00282 57 TPLNDGQWHRVAVERNG--RRVTLSVD 81 (135)
T ss_pred eEeCCCCEEEEEEEEeC--CEEEEEEC
Confidence 36889999999999986 66777776
No 159
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.01 E-value=1.6 Score=46.32 Aligned_cols=43 Identities=23% Similarity=0.242 Sum_probs=28.6
Q ss_pred ceeccCCCceEEEEEeCCCCeeEEEEEeecCCcccccCcchhhhhccC
Q 042239 366 ECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQFLSSQQGLDKRRLLEEI 413 (413)
Q Consensus 366 ~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~~~~s~~~~~~~eF~~Ev 413 (413)
..||.|.||.|||++-.+...-.|-|.+... +... ..+|+-||
T Consensus 38 GELGDGAFGKVyKA~nket~~lAAaKvIetk---seEE--LEDylVEI 80 (1187)
T KOG0579|consen 38 GELGDGAFGKVYKAVNKETKLLAAAKVIETK---SEEE--LEDYLVEI 80 (1187)
T ss_pred hhhcCccchhhhhhhcccchhhhhhhhhccc---chhH--Hhhhhhhh
Confidence 3578999999999997765553466766544 3333 45666554
No 160
>PHA03207 serine/threonine kinase US3; Provisional
Probab=60.24 E-value=9.1 Score=38.38 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=24.8
Q ss_pred CCCCceeccCCCceEEEEEeCCC--CeeEEEEEeec
Q 042239 362 FSELECLGSDYRGVYYRGKLPNG--RQPVAGKRFSS 395 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g--~~~VAVKrl~~ 395 (413)
|.-...||+|+||.||++...+. ...||||.+..
T Consensus 94 y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~ 129 (392)
T PHA03207 94 YNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTG 129 (392)
T ss_pred eEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccc
Confidence 33357899999999999876432 23499998865
No 161
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=60.22 E-value=1.6 Score=44.30 Aligned_cols=28 Identities=21% Similarity=0.048 Sum_probs=21.8
Q ss_pred ceeccCCCceEEEEEeCCCCeeEEEEEe
Q 042239 366 ECLGSDYRGVYYRGKLPNGRQPVAGKRF 393 (413)
Q Consensus 366 ~~LG~G~fG~VYkG~L~~g~~~VAVKrl 393 (413)
++||+|||..|||+.--.....||||.-
T Consensus 469 hLLGrGGFSEVyKAFDl~EqRYvAvKIH 496 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAFDLTEQRYVAVKIH 496 (775)
T ss_pred HHhccccHHHHHHhcccchhheeeEeee
Confidence 6899999999999974333345999864
No 162
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=60.01 E-value=5.3 Score=40.29 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=26.9
Q ss_pred ceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 366 ECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 366 ~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
..||.|.-|+||-+.+.+.....|+|.+.+.
T Consensus 83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~ 113 (459)
T KOG0610|consen 83 KRLGCGDIGTVYLVELRGTNCLFAMKVMDKE 113 (459)
T ss_pred HHcCCCCceeEEEEEecCCCceEEEEEecHH
Confidence 6799999999999999876555999999765
No 163
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=58.52 E-value=2.9 Score=40.79 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=24.5
Q ss_pred CceeccCCCceEEEEEeCCCC----eeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPNGR----QPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~----~~VAVKrl~~~ 396 (413)
...||+|.+|.|||++-.+.. .+.|+|+++..
T Consensus 29 ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~ 64 (438)
T KOG0666|consen 29 IGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGE 64 (438)
T ss_pred cceecccccceeeEeeeccCCcccchhhHHHHHhcc
Confidence 356999999999999764432 25899999764
No 164
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=58.37 E-value=11 Score=35.39 Aligned_cols=36 Identities=6% Similarity=-0.093 Sum_probs=28.0
Q ss_pred ccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 359 TRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 359 T~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
.+.+...++||.|+||.||...- ++.. +|||.+...
T Consensus 30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~-~iiKvf~~~ 65 (232)
T PRK10359 30 SYNIKTIKVFRNIDDTKVSLIDT-DYGK-YILKVFAPK 65 (232)
T ss_pred hCceEEEEEecCCCceEEEEEec-CCCc-EEEEEechh
Confidence 35566678999999999998655 4555 999999753
No 165
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.47 E-value=9.7 Score=38.60 Aligned_cols=45 Identities=20% Similarity=0.090 Sum_probs=31.7
Q ss_pred ecccccccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 351 TLSEISVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 351 s~~eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
+-.+..+||. |.=-.+||+|+||.|.-+.-+...+-.|||.|+.+
T Consensus 341 ~~~d~i~~tD-FnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKD 385 (683)
T KOG0696|consen 341 SKRDRIKATD-FNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKD 385 (683)
T ss_pred Ccccceeecc-cceEEEeccCccceeeeecccCcchhhhhhhhccc
Confidence 3345555553 44468999999999998886554443899988754
No 166
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=56.96 E-value=3.6 Score=43.24 Aligned_cols=29 Identities=41% Similarity=0.587 Sum_probs=24.9
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
-+-||.|.-|.||.|.|.+. . |||||++.
T Consensus 129 LeWlGSGaQGAVF~Grl~ne-t-VAVKKV~e 157 (904)
T KOG4721|consen 129 LEWLGSGAQGAVFLGRLHNE-T-VAVKKVRE 157 (904)
T ss_pred hhhhccCcccceeeeeccCc-e-ehhHHHhh
Confidence 46799999999999999764 4 99999865
No 167
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=55.92 E-value=3.4 Score=40.42 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=30.4
Q ss_pred ecccccccccCCCCCceeccCCCceEEEEE-eCCCCeeEEEEEeecC
Q 042239 351 TLSEISVATRAFSELECLGSDYRGVYYRGK-LPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 351 s~~eL~~AT~~Fs~~~~LG~G~fG~VYkG~-L~~g~~~VAVKrl~~~ 396 (413)
+|+|+-+.| +.+||+|.++.|-.++ +..|.+ .|||.+...
T Consensus 74 ~F~d~YkLt-----~e~LGeGAyasVqtcv~i~t~~E-YAVKiidKq 114 (463)
T KOG0607|consen 74 KFEDMYKLT-----SELLGEGAYASVQTCVSIQTGKE-YAVKIIDKQ 114 (463)
T ss_pred hHHHHHHhH-----HHHhcCccceeeeeeeeeccchh-hhhhhhhcC
Confidence 357777777 4789999999998765 345555 999999764
No 168
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=54.95 E-value=7.8 Score=35.80 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=24.8
Q ss_pred CCCCceeccCCCceEEEEEe-CCCCeeEEEEEeecC
Q 042239 362 FSELECLGSDYRGVYYRGKL-PNGRQPVAGKRFSSQ 396 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L-~~g~~~VAVKrl~~~ 396 (413)
+..-..||+|++|.|-|-.+ .+|.. .|||++...
T Consensus 48 L~~i~elGrGayG~vekmrh~~sg~i-mAvKri~~t 82 (282)
T KOG0984|consen 48 LVGIEELGRGAYGVVEKMRHIQSGTI-MAVKRIRAT 82 (282)
T ss_pred hhhhhhhcCCccchhhheeeccCCeE-EEEeeehhh
Confidence 33346799999998766554 56666 999999653
No 169
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=50.62 E-value=4.1 Score=42.63 Aligned_cols=45 Identities=18% Similarity=0.056 Sum_probs=31.9
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecCCcccccCcchhhhhccC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQFLSSQQGLDKRRLLEEI 413 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~~~~s~~~~~~~eF~~Ev 413 (413)
..+||+||...|||..-.+.+. +|.||+..... ..+. ...|.+||
T Consensus 366 lk~iG~GGSSkV~kV~~s~~~i-yalkkv~~~~~-D~qt--l~gy~nEI 410 (677)
T KOG0596|consen 366 LKQIGSGGSSKVFKVLNSDKQI-YALKKVVLLEA-DNQT--LDGYRNEI 410 (677)
T ss_pred HHhhcCCCcceeeeeecCCCcc-hhhhHHHHhhc-CHHH--HHHHHHHH
Confidence 4689999999999988877676 89988754311 2333 45676664
No 170
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=50.36 E-value=1.5e+02 Score=24.62 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.0
Q ss_pred ccCCCCeEEEEEEEeCCCcEEEEEEE
Q 042239 200 FLNDGSVHRAWIAYDGTRGWMDVRIG 225 (413)
Q Consensus 200 ~l~~g~~~~v~I~Y~~~~~~L~V~l~ 225 (413)
.+.||++|++.|.++. +.+.++++
T Consensus 76 ~v~dg~Wh~v~i~~~~--~~~~l~VD 99 (151)
T cd00110 76 PLNDGQWHSVSVERNG--RSVTLSVD 99 (151)
T ss_pred ccCCCCEEEEEEEECC--CEEEEEEC
Confidence 5789999999999987 67888887
No 171
>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A.
Probab=50.17 E-value=15 Score=35.51 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=27.5
Q ss_pred CCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 364 ELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 364 ~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
....||.|+++.||..+-..-+++.|||.....
T Consensus 16 ~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~ 48 (288)
T PF14531_consen 16 RGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLP 48 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTTTEEEEEEEEEES
T ss_pred EccccccCCceEEEEEEEccCCceEEEEEEecc
Confidence 357899999999999998776666999988543
No 172
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=49.95 E-value=5.4 Score=38.56 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=0.0
Q ss_pred cCCCCCCceeE
Q 042239 171 FGGPNDNHVGI 181 (413)
Q Consensus 171 ~~dp~~~Hvgi 181 (413)
++|++.+||-|
T Consensus 32 ~GD~nts~ItV 42 (290)
T PF05454_consen 32 FGDRNTSSITV 42 (290)
T ss_dssp -----------
T ss_pred hCCCCCCeEEE
Confidence 45777777665
No 173
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=49.89 E-value=23 Score=37.71 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=8.9
Q ss_pred HHHHHHHhhhhhhccc
Q 042239 314 ALVIFLAMYCISRRQR 329 (413)
Q Consensus 314 ~l~~~~~~~~~~rr~~ 329 (413)
+++++++.|++||++|
T Consensus 283 ~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 283 LLIIIILYWKLCRKNK 298 (684)
T ss_pred HHHHHHHHHHHhcccc
Confidence 3444555566676655
No 174
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=48.86 E-value=14 Score=24.52 Aligned_cols=8 Identities=25% Similarity=-0.047 Sum_probs=3.3
Q ss_pred EehhHHHH
Q 042239 303 GFLIFIVV 310 (413)
Q Consensus 303 i~i~~~~~ 310 (413)
+.++++++
T Consensus 11 vaIa~~Vv 18 (40)
T PF08693_consen 11 VAIAVGVV 18 (40)
T ss_pred EEEEEEEE
Confidence 34444433
No 175
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=48.68 E-value=15 Score=37.41 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=18.9
Q ss_pred CCCCCCeeEehhHHHHHHHHHHHHHHhhhhhhc
Q 042239 295 HRQPEPAHGFLIFIVVSVLALVIFLAMYCISRR 327 (413)
Q Consensus 295 ~~~~~~~~i~i~~~~~~~~~l~~~~~~~~~~rr 327 (413)
+..+...+++|.+++++++.-+++++.||+.-|
T Consensus 362 s~LstgaIaGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 362 SGLSTGAIAGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred ccccccceeeeeehhHHHHHHHHHHHhhheeec
Confidence 344556666666665555555556665655443
No 176
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=47.26 E-value=9.4 Score=39.89 Aligned_cols=34 Identities=15% Similarity=0.013 Sum_probs=26.7
Q ss_pred CCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 362 FSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
|.=..+||.|.|.+||++.-.....++|||.+..
T Consensus 75 F~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K 108 (604)
T KOG0592|consen 75 FKFGKILGEGSYSTVVLAREKATGKEYAIKVLDK 108 (604)
T ss_pred cchhheeccccceeEEEeeecCCCceeeHhhhhH
Confidence 3336789999999999998755444599998854
No 177
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=46.39 E-value=16 Score=35.13 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=37.5
Q ss_pred eeecccccccc--cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecCCcccccCcchhhhhcc
Q 042239 349 RFTLSEISVAT--RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQFLSSQQGLDKRRLLEE 412 (413)
Q Consensus 349 ~fs~~eL~~AT--~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~~~~s~~~~~~~eF~~E 412 (413)
.++..||.+.+ ..|.-...||+|.||.+.-+.-+.....+++|-+.+. ... .++|..|
T Consensus 11 ~I~~~el~kv~l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p----~tt--~~dF~rE 70 (378)
T KOG1345|consen 11 LIPMEELKKVDLEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRP----QTT--QADFVRE 70 (378)
T ss_pred ccccccccccchhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcc----hhh--HHHHHHH
Confidence 34444444332 2243456899999999998887665555999988663 233 5677766
No 178
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=45.30 E-value=9.7 Score=38.52 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=25.0
Q ss_pred ceeccCCCceEEEEEe-CCCCeeEEEEEeecC
Q 042239 366 ECLGSDYRGVYYRGKL-PNGRQPVAGKRFSSQ 396 (413)
Q Consensus 366 ~~LG~G~fG~VYkG~L-~~g~~~VAVKrl~~~ 396 (413)
..||+|.||.|-++.- ..|+. ||||.++.+
T Consensus 59 etLGkGTYGKVk~A~e~~sgR~-VAiKsIrKd 89 (668)
T KOG0611|consen 59 ETLGKGTYGKVKLAYEHKSGRE-VAIKSIRKD 89 (668)
T ss_pred HHhcCCcccceeehhhccCCcE-eehhhhhhh
Confidence 5689999999999886 45666 999999765
No 179
>PHA03265 envelope glycoprotein D; Provisional
Probab=45.21 E-value=13 Score=36.58 Aligned_cols=9 Identities=33% Similarity=0.460 Sum_probs=5.2
Q ss_pred CcchhhHHH
Q 042239 1 MDICLYYCF 9 (413)
Q Consensus 1 ~~~~~~~~~ 9 (413)
||-||-...
T Consensus 8 ~~~~~~~~~ 16 (402)
T PHA03265 8 MDGRLVFAM 16 (402)
T ss_pred ccceeHHHH
Confidence 677764433
No 180
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=44.90 E-value=15 Score=35.83 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccc
Q 042239 305 LIFIVVSVLALVIFLAMYCISRRQR 329 (413)
Q Consensus 305 i~~~~~~~~~l~~~~~~~~~~rr~~ 329 (413)
|+++++++.+++++++.|++.|||+
T Consensus 275 IaVG~~La~lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 275 IAVGAALAGLVLIVLIAYLIGRRRS 299 (306)
T ss_pred HHHHHHHHHHHHHHHHhheeEeccc
Confidence 3444444444444445555555444
No 181
>PHA03210 serine/threonine kinase US3; Provisional
Probab=44.65 E-value=9.1 Score=39.99 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=18.7
Q ss_pred cCCCCCceeccCCCceEEEEEeCC
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPN 383 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~ 383 (413)
..|.-..+||+|+||.||++.+..
T Consensus 148 ~~Y~ii~~LG~G~fG~Vyl~~~~~ 171 (501)
T PHA03210 148 AHFRVIDDLPAGAFGKIFICALRA 171 (501)
T ss_pred hccEEEeEecCCCCcceEEEEEec
Confidence 345556789999999999987643
No 182
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=44.54 E-value=17 Score=36.01 Aligned_cols=33 Identities=30% Similarity=0.278 Sum_probs=24.7
Q ss_pred CCCCCceeccCCCceEEEEEe-CCCCeeEEEEEee
Q 042239 361 AFSELECLGSDYRGVYYRGKL-PNGRQPVAGKRFS 394 (413)
Q Consensus 361 ~Fs~~~~LG~G~fG~VYkG~L-~~g~~~VAVKrl~ 394 (413)
+|.-..+||.|.||..+.|+- -++. +||||---
T Consensus 29 hyrVGkKIGeGsFG~lf~G~Nl~nne-~VAIKfEP 62 (449)
T KOG1165|consen 29 HYRVGKKIGEGSFGVLFLGKNLYNNE-PVAIKFEP 62 (449)
T ss_pred cceeccccccCcceeeecccccccCc-eEEEEecc
Confidence 355568999999999998873 3444 49999753
No 183
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=43.40 E-value=5.5 Score=32.58 Aligned_cols=15 Identities=13% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhcccc
Q 042239 316 VIFLAMYCISRRQRK 330 (413)
Q Consensus 316 ~~~~~~~~~~rr~~~ 330 (413)
+++++.+|++|||..
T Consensus 38 iLLliGCWYckRRSG 52 (118)
T PF14991_consen 38 ILLLIGCWYCKRRSG 52 (118)
T ss_dssp ---------------
T ss_pred HHHHHhheeeeecch
Confidence 334444555665554
No 184
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=43.07 E-value=8 Score=39.80 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=6.2
Q ss_pred CCcEEEEEecCCCCCCCCC
Q 042239 124 GSSLTFIIVPDEFTVGRAG 142 (413)
Q Consensus 124 gdGlaF~l~~~~~~~~~~g 142 (413)
-.|..|.+.+..+-+-..|
T Consensus 144 ~~~~~~~~~~~~s~vf~~G 162 (439)
T PF02480_consen 144 RHGATFHLKNYHSHVFSPG 162 (439)
T ss_dssp --SEEEEEE--SEEE--TT
T ss_pred ccccEEEEeccceEEecCC
Confidence 3455555555443333333
No 185
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=42.47 E-value=27 Score=29.42 Aligned_cols=6 Identities=33% Similarity=0.340 Sum_probs=2.7
Q ss_pred hhhhcc
Q 042239 323 CISRRQ 328 (413)
Q Consensus 323 ~~~rr~ 328 (413)
.+++|+
T Consensus 24 rRR~r~ 29 (130)
T PF12273_consen 24 RRRRRR 29 (130)
T ss_pred HHHhhc
Confidence 444443
No 186
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=42.18 E-value=27 Score=32.05 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=10.3
Q ss_pred eeEehhHHHHHHHHHHHHHHhhhhhh
Q 042239 301 AHGFLIFIVVSVLALVIFLAMYCISR 326 (413)
Q Consensus 301 ~~i~i~~~~~~~~~l~~~~~~~~~~r 326 (413)
++++++.+++.+++++++.+++++||
T Consensus 39 I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHHHHHh
Confidence 33444444333333333333344344
No 187
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=41.71 E-value=17 Score=32.71 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=6.0
Q ss_pred CCCCCceeEecCC
Q 042239 173 GPNDNHVGINLGS 185 (413)
Q Consensus 173 dp~~~Hvgi~~ns 185 (413)
++....|-|..+.
T Consensus 49 ~~~~~~V~I~l~y 61 (189)
T PF14610_consen 49 DPSNSTVRIHLSY 61 (189)
T ss_pred cCCCcEEEEEEEe
Confidence 3444445554433
No 188
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=40.91 E-value=1.6e+02 Score=23.36 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=14.3
Q ss_pred ccC-CCceEEEEEeCCCCeeEEE
Q 042239 369 GSD-YRGVYYRGKLPNGRQPVAG 390 (413)
Q Consensus 369 G~G-~fG~VYkG~L~~g~~~VAV 390 (413)
|+| .-|+||| +++|+. +-|
T Consensus 71 G~G~~~G~aYr--l~~Gk~-I~V 90 (92)
T PF09919_consen 71 GSGERLGTAYR--LKDGKL-IYV 90 (92)
T ss_pred CCCeECeEEEE--cCCceE-EEe
Confidence 455 5799999 888876 544
No 189
>PTZ00370 STEVOR; Provisional
Probab=40.73 E-value=23 Score=34.03 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=2.5
Q ss_pred eeeeec
Q 042239 240 GFSAST 245 (413)
Q Consensus 240 GFsasT 245 (413)
|+.||-
T Consensus 190 GLaAAK 195 (296)
T PTZ00370 190 GLAAAK 195 (296)
T ss_pred HHHHHH
Confidence 444443
No 190
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=39.94 E-value=34 Score=22.10 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHH
Q 042239 5 LYYCFFLLVSIE 16 (413)
Q Consensus 5 ~~~~~~~l~~~~ 16 (413)
+|+|||.+|+.+
T Consensus 9 fylc~l~~llfl 20 (43)
T PF11395_consen 9 FYLCFLSFLLFL 20 (43)
T ss_pred HHHHHHHHHHHH
Confidence 677766554433
No 191
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=39.13 E-value=33 Score=23.51 Aligned_cols=18 Identities=11% Similarity=0.360 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhhhhhccc
Q 042239 312 VLALVIFLAMYCISRRQR 329 (413)
Q Consensus 312 ~~~l~~~~~~~~~~rr~~ 329 (413)
++++++++++|.+++++|
T Consensus 18 ~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHcccch
Confidence 334444555555554443
No 192
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=38.68 E-value=39 Score=32.70 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=25.9
Q ss_pred ceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 366 ECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 366 ~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
..||.|..|.|.|......+..+|||...+.
T Consensus 98 ~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt 128 (391)
T KOG0983|consen 98 GDLGSGTCGQVWKMRFRSTGHIIAVKQMRRT 128 (391)
T ss_pred HhhcCCCccceEEEEEcccceEEEEEeeccc
Confidence 4689999999999998775555999999775
No 193
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.80 E-value=1.5 Score=41.43 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=24.8
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEee
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFS 394 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~ 394 (413)
-++||+|.||.|+|+.-.+.+..||+|++-
T Consensus 22 ~~kigqGtfgeVFkAr~~n~~kkvalkkvl 51 (376)
T KOG0669|consen 22 LAKIGQGTFGEVFKARSKNTGKKVALKKVL 51 (376)
T ss_pred HHhcCCchHHHHHHHhhcCccchhHHHHHH
Confidence 478999999999999987766558998763
No 194
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.25 E-value=24 Score=29.57 Aligned_cols=15 Identities=13% Similarity=0.312 Sum_probs=5.1
Q ss_pred HHHHHHhhhhhhccc
Q 042239 315 LVIFLAMYCISRRQR 329 (413)
Q Consensus 315 l~~~~~~~~~~rr~~ 329 (413)
+++.+++.+++||..
T Consensus 82 lli~y~irR~~Kk~~ 96 (122)
T PF01102_consen 82 LLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCC
Confidence 344444444444443
No 195
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=37.09 E-value=32 Score=35.66 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=28.8
Q ss_pred cccCCCCCceeccCCCceEEEEEeCC-CCeeEEEEEeecC
Q 042239 358 ATRAFSELECLGSDYRGVYYRGKLPN-GRQPVAGKRFSSQ 396 (413)
Q Consensus 358 AT~~Fs~~~~LG~G~fG~VYkG~L~~-g~~~VAVKrl~~~ 396 (413)
..|.|.-...||+|.||.|-.+.-.. +.. +|||.+.+.
T Consensus 95 ~lNqy~l~~eiG~G~yGkVkLar~~~~~~l-~AiKil~K~ 133 (576)
T KOG0585|consen 95 QLNQYELIKEIGSGQYGKVKLARDEVDGKL-YAIKILPKK 133 (576)
T ss_pred ehhheehhhhhcCCccceEEEEeecCCCcE-EEEEeechh
Confidence 34556556789999999999887544 445 999999654
No 196
>PF15050 SCIMP: SCIMP protein
Probab=36.99 E-value=25 Score=29.08 Aligned_cols=14 Identities=43% Similarity=0.883 Sum_probs=6.9
Q ss_pred HHHHHHhhhhhhcc
Q 042239 315 LVIFLAMYCISRRQ 328 (413)
Q Consensus 315 l~~~~~~~~~~rr~ 328 (413)
+.++++++|.||+.
T Consensus 21 ~~lglIlyCvcR~~ 34 (133)
T PF15050_consen 21 VVLGLILYCVCRWQ 34 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
No 197
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=36.07 E-value=60 Score=31.36 Aligned_cols=10 Identities=20% Similarity=-0.014 Sum_probs=3.8
Q ss_pred EehhHHHHHH
Q 042239 303 GFLIFIVVSV 312 (413)
Q Consensus 303 i~i~~~~~~~ 312 (413)
++++++.+++
T Consensus 232 IslAiALG~v 241 (281)
T PF12768_consen 232 ISLAIALGTV 241 (281)
T ss_pred EehHHHHHHH
Confidence 3344433333
No 198
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=36.02 E-value=12 Score=40.93 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=17.5
Q ss_pred CCCCceeccCCCceEEEEEeCC
Q 042239 362 FSELECLGSDYRGVYYRGKLPN 383 (413)
Q Consensus 362 Fs~~~~LG~G~fG~VYkG~L~~ 383 (413)
....+.||+|+||+||-|.-.+
T Consensus 996 it~~relg~gsfg~Vy~g~~nn 1017 (1025)
T KOG4258|consen 996 ITLGRELGQGSFGMVYEGNANN 1017 (1025)
T ss_pred HhhhhhhccCccceEEEecCCc
Confidence 3446889999999999987543
No 199
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=35.78 E-value=41 Score=36.85 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=7.6
Q ss_pred EeeEEeeCCCC
Q 042239 255 LSWNFSSISQP 265 (413)
Q Consensus 255 ~sWsf~~~~~~ 265 (413)
+-|+|......
T Consensus 236 LvWty~AphLG 246 (807)
T PF10577_consen 236 LVWTYIAPHLG 246 (807)
T ss_pred EEEEEECcccc
Confidence 46999876553
No 200
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=35.46 E-value=1.8e+02 Score=33.25 Aligned_cols=121 Identities=24% Similarity=0.274 Sum_probs=68.6
Q ss_pred cCeEEecceEEeC-CCCeEEcCCCCCCcCCCCceEEEEecCceeecCCCC-----CCccceEEEEEEEEecCCCCCCCCC
Q 042239 49 HDLKLLGSAKLSN-EKRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVT-----KTPTSFETTFSFQFNTSNNTRTSRD 122 (413)
Q Consensus 49 ~~l~l~G~A~~~~-~~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~-----~~~~sF~t~F~f~i~~~~~~~~~~~ 122 (413)
..|.|+|..++.- -.+.++|..-.. ..-+|++-..|+.+....+ .=.|.|+.+|-|+.....
T Consensus 804 ~~LvFNG~~Yld~~K~~~~~ls~l~a-----~fkl~~iv~~paTf~sk~Sy~~la~L~ay~s~~l~Fqfkt~s------- 871 (1591)
T KOG3514|consen 804 SGLVFNGQDYLDKCKMGDIQLSELSA-----RFKLRAIVADPATFKSKSSYVKLATLQAYFSMHLFFQFKTTS------- 871 (1591)
T ss_pred hheEECcHHHHHHHhcCCcchhhcch-----hhCceEEeeccceeeechhhhhhhhhheeeEEEEEEEEeecC-------
Confidence 5789999877631 145666655432 4457888888998875432 234678888888776543
Q ss_pred CCCcEEEEEecCCCCCCCCCCccccccCCCCCCCceEEEEeeecccCccCCCCCCceeEecCC-CcccccccCCCCcccc
Q 042239 123 GGSSLTFIIVPDEFTVGRAGPWLGVLNDACKDDYKAVAVKFDTCRDLEFGGPNDNHVGINLGS-IVSTRAINASDVGIFL 201 (413)
Q Consensus 123 ~gdGlaF~l~~~~~~~~~~g~~lGl~~~~~~g~~~~vAVEfDT~~n~~~~dp~~~Hvgi~~ns-~~s~~~~~~~~~~~~l 201 (413)
.|||--+ +. ..-|.++|||.=.-+ =|--.|++. -.+.+ ......|
T Consensus 872 -p~gll~f--n~------------------gd~ndfi~velvnG~---------ihYtfdlg~gp~~~k----~~sr~hl 917 (1591)
T KOG3514|consen 872 -PDGLLLF--NS------------------GDGNDFIAVELVNGY---------IHYTFDLGNGPTSMK----GPSRQHL 917 (1591)
T ss_pred -CCeEEEe--cC------------------CCCCceEEEEEeCcE---------EEEEEEcCCCccccc----CcccCcC
Confidence 5665322 21 112788899843210 111222211 11111 1224578
Q ss_pred CCCCeEEEEEEEeC
Q 042239 202 NDGSVHRAWIAYDG 215 (413)
Q Consensus 202 ~~g~~~~v~I~Y~~ 215 (413)
+|..+|+|-|.-|.
T Consensus 918 nDnrWHnV~I~rd~ 931 (1591)
T KOG3514|consen 918 NDNRWHNVLIYRDK 931 (1591)
T ss_pred ccccceeEEEEcCC
Confidence 88999999987774
No 201
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=35.08 E-value=34 Score=29.33 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=4.7
Q ss_pred HHHhhhhhhccc
Q 042239 318 FLAMYCISRRQR 329 (413)
Q Consensus 318 ~~~~~~~~rr~~ 329 (413)
+++.|+.+||||
T Consensus 47 vli~lcssRKkK 58 (189)
T PF05568_consen 47 VLIYLCSSRKKK 58 (189)
T ss_pred HHHHHHhhhhHH
Confidence 333344344433
No 202
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=34.48 E-value=35 Score=36.18 Aligned_cols=38 Identities=11% Similarity=-0.016 Sum_probs=29.3
Q ss_pred ccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 359 TRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 359 T~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
+.++.-...||+|.|+.|.-+.-.....+||||.++..
T Consensus 55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt 92 (596)
T KOG0586|consen 55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKT 92 (596)
T ss_pred ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhc
Confidence 44555567899999999999887554445999999775
No 203
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=32.97 E-value=75 Score=29.05 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=11.4
Q ss_pred eeEehhHHHHHHHHHHHHHHhhhhhhc
Q 042239 301 AHGFLIFIVVSVLALVIFLAMYCISRR 327 (413)
Q Consensus 301 ~~i~i~~~~~~~~~l~~~~~~~~~~rr 327 (413)
+.|++++.+.++++++++..+|+++.|
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~R 127 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQR 127 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhh
Confidence 444444444333344444444444433
No 204
>PF15102 TMEM154: TMEM154 protein family
Probab=32.81 E-value=35 Score=29.41 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=4.7
Q ss_pred HHhhhhhhccc
Q 042239 319 LAMYCISRRQR 329 (413)
Q Consensus 319 ~~~~~~~rr~~ 329 (413)
+..+.++|.|+
T Consensus 79 v~~~kRkr~K~ 89 (146)
T PF15102_consen 79 VIYYKRKRTKQ 89 (146)
T ss_pred eeEEeecccCC
Confidence 33444444443
No 205
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=31.98 E-value=40 Score=35.61 Aligned_cols=31 Identities=26% Similarity=0.182 Sum_probs=26.1
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
+.-|+.-+.|.|||++|++|.. ||||.-+..
T Consensus 166 ~~piaaASlaQVhrA~L~~G~~-VaVKVQ~P~ 196 (538)
T KOG1235|consen 166 EEPIAAASLAQVHRARLKNGED-VAVKVQHPG 196 (538)
T ss_pred cchhhhcchhheEEEEecCCCE-EEEEecCcC
Confidence 3567888889999999999988 999987653
No 206
>PTZ00046 rifin; Provisional
Probab=29.51 E-value=36 Score=33.88 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHHhc
Q 042239 5 LYYCFFLLVSIEVFSILV 22 (413)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~ 22 (413)
||+.. ||+.+++=+|+
T Consensus 4 HY~nI--LLF~lpLNILv 19 (358)
T PTZ00046 4 HYINI--LLFALPLNILV 19 (358)
T ss_pred HHHHH--HHHHhHHHHHH
Confidence 55554 33444444444
No 207
>PHA03283 envelope glycoprotein E; Provisional
Probab=29.39 E-value=54 Score=34.19 Aligned_cols=7 Identities=14% Similarity=0.824 Sum_probs=4.5
Q ss_pred EEeeEEe
Q 042239 254 LLSWNFS 260 (413)
Q Consensus 254 I~sWsf~ 260 (413)
+..|..+
T Consensus 340 veAW~Yt 346 (542)
T PHA03283 340 PEAWTYT 346 (542)
T ss_pred eeeeEEE
Confidence 5667765
No 208
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=29.33 E-value=42 Score=32.73 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=24.9
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
-..||.|+||.|.-......+...|.|.|+.
T Consensus 49 ~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k 79 (355)
T KOG0616|consen 49 LKTLGTGSFGRVHLVREKHSGNYYAMKVLDK 79 (355)
T ss_pred eeeeccCccceEEEEEEccCCceeehhhcCH
Confidence 4679999999999877755555599999865
No 209
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=29.26 E-value=71 Score=29.05 Aligned_cols=26 Identities=15% Similarity=0.343 Sum_probs=24.4
Q ss_pred ccCCCCeEEEEEEEeCCCcEEEEEEE
Q 042239 200 FLNDGSVHRAWIAYDGTRGWMDVRIG 225 (413)
Q Consensus 200 ~l~~g~~~~v~I~Y~~~~~~L~V~l~ 225 (413)
.+.+|++|++-+.||+.++++.+|++
T Consensus 86 ~~~~g~W~hvc~tw~~~~g~~~lyvn 111 (206)
T smart00159 86 PESDGKWHHICTTWESSSGIAELWVD 111 (206)
T ss_pred cccCCceEEEEEEEECCCCcEEEEEC
Confidence 56899999999999999999999998
No 210
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=28.20 E-value=35 Score=29.52 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=17.6
Q ss_pred chhhHHHHHHHHH-HHHHHhccC
Q 042239 3 ICLYYCFFLLVSI-EVFSILVDS 24 (413)
Q Consensus 3 ~~~~~~~~~l~~~-~~~~~~~~~ 24 (413)
|++|++++.||++ ++||.++.|
T Consensus 58 VIivl~Vi~lLvlYM~fL~~ldP 80 (149)
T PF05434_consen 58 VIIVLWVIGLLVLYMLFLMCLDP 80 (149)
T ss_pred EEEeHHHHHHHHHHHHHHHHHhH
Confidence 4688998888777 888888874
No 211
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=27.63 E-value=40 Score=33.43 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHHHhc
Q 042239 5 LYYCFFLLVSIEVFSILV 22 (413)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~ 22 (413)
||+.. ||+.+++=+|+
T Consensus 4 Hy~NI--LLF~lpLNILv 19 (353)
T TIGR01477 4 HYINI--LLFSLPLNILV 19 (353)
T ss_pred HHHHH--HHHHHHHHHHh
Confidence 56665 33444444554
No 212
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.35 E-value=1.2e+02 Score=22.27 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=15.6
Q ss_pred CCCeeEehhHHHHHHHHHHHHHHhhhhhhc
Q 042239 298 PEPAHGFLIFIVVSVLALVIFLAMYCISRR 327 (413)
Q Consensus 298 ~~~~~i~i~~~~~~~~~l~~~~~~~~~~rr 327 (413)
+-.+++.+.++..++++++...+++.++++
T Consensus 11 nPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 11 NPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred CCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 345556555555555454444455555543
No 213
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=27.25 E-value=12 Score=42.65 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=30.8
Q ss_pred cccccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 354 EISVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 354 eL~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
+|+--...|.=-.+||+|+||.|.--.+..-+...|.|+++.
T Consensus 69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK 110 (1317)
T KOG0612|consen 69 ELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNK 110 (1317)
T ss_pred HHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhH
Confidence 343333445445789999999999888866555489999965
No 214
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=26.95 E-value=1.1e+02 Score=25.31 Aligned_cols=26 Identities=19% Similarity=-0.035 Sum_probs=11.1
Q ss_pred EehhHHHHHHHHHHHHHHhhhhhhcc
Q 042239 303 GFLIFIVVSVLALVIFLAMYCISRRQ 328 (413)
Q Consensus 303 i~i~~~~~~~~~l~~~~~~~~~~rr~ 328 (413)
+.+++++.+++++..+....+++|++
T Consensus 86 Lp~VIGGLcaL~LaamGA~~LLrR~c 111 (126)
T PF03229_consen 86 LPLVIGGLCALTLAAMGAGALLRRCC 111 (126)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445544444444433333333333
No 215
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=26.63 E-value=86 Score=29.19 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=23.8
Q ss_pred Cceec-cCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 365 LECLG-SDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 365 ~~~LG-~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
..+|| .||.|+||+.... +.. ++||+...
T Consensus 36 ~~~lg~~~g~gtv~~v~~~-~~~-~vlk~~~r 65 (239)
T PRK01723 36 ARVVGSAKGRGTTWFVQTP-GVN-WVLRHYRR 65 (239)
T ss_pred CceeecCCCCccEEEEEeC-Cce-EEEEEeeE
Confidence 46898 9999999999886 445 89998864
No 216
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=25.86 E-value=32 Score=39.92 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=30.4
Q ss_pred ccccccCCCCCceeccCCCceEEEEEeCCCCeeEEEEEee
Q 042239 355 ISVATRAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFS 394 (413)
Q Consensus 355 L~~AT~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~ 394 (413)
|...|-++...+.||.|-||.||-++-.+.+.-.|||-+.
T Consensus 1230 lsnV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~ 1269 (1509)
T KOG4645|consen 1230 LSNVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIK 1269 (1509)
T ss_pred hccceeeeccccccCCcceeeeEEeecCCccchhhhhhhh
Confidence 3455666777899999999999998865544438999764
No 217
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.39 E-value=63 Score=31.05 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=3.1
Q ss_pred Hhhhhhhc
Q 042239 320 AMYCISRR 327 (413)
Q Consensus 320 ~~~~~~rr 327 (413)
.+|+++||
T Consensus 279 YiWlyrrR 286 (295)
T TIGR01478 279 YIWLYRRR 286 (295)
T ss_pred HHHHHHhh
Confidence 33433333
No 218
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=25.32 E-value=34 Score=28.66 Aligned_cols=10 Identities=20% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHhhhhhhc
Q 042239 318 FLAMYCISRR 327 (413)
Q Consensus 318 ~~~~~~~~rr 327 (413)
++++|+++||
T Consensus 97 g~lv~rrcrr 106 (129)
T PF12191_consen 97 GFLVWRRCRR 106 (129)
T ss_dssp ----------
T ss_pred HHHHHhhhhc
Confidence 3333333333
No 219
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=24.82 E-value=4.8e+02 Score=23.39 Aligned_cols=97 Identities=21% Similarity=0.349 Sum_probs=51.3
Q ss_pred CCCCCcceeEEcCCCCCCCCcCcccCeEEecceEEeCCCCeEEcCCCCCCcCCCCceEEEEecCceeecCCCCCCccceE
Q 042239 25 SPEISARKHVFFPDFSLHNNSKILHDLKLLGSAKLSNEKRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVTKTPTSFE 104 (413)
Q Consensus 25 ~~~~~~~~~f~~~~f~~~~~~~~~~~l~l~G~A~~~~~~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~~~~~sF~ 104 (413)
.|+.+.+++++|..|... | +|+-+ +-.|++|+++. +.|.. +
T Consensus 31 ~P~~~ldv~v~~~gf~~G-D----~NYPI---------~Pkl~iTNns~----------------~~iPG-------G-- 71 (180)
T PF06483_consen 31 MPTEALDVSVSFTGFKLG-D----SNYPI---------NPKLTITNNSG----------------QTIPG-------G-- 71 (180)
T ss_pred CCCceEEEEEEeCCcccC-C----CCCCc---------CCcEEEEcCCC----------------cccCC-------c--
Confidence 455666788888888762 2 34433 34455555543 11111 1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEecCCCCCCCCCCccccccCCCCCCCceEEEEeeeccc
Q 042239 105 TTFSFQFNTSNNTRTSRDGGSSLTFIIVPDEFTVGRAGPWLGVLNDACKDDYKAVAVKFDTCRD 168 (413)
Q Consensus 105 t~F~f~i~~~~~~~~~~~~gdGlaF~l~~~~~~~~~~g~~lGl~~~~~~g~~~~vAVEfDT~~n 168 (413)
|+|+|-+....-..-+...|.||.-+-..+....+.-| || .|.-|.|++.+.+|++
T Consensus 72 t~~~FD~ptSa~~~~kdqSG~g~~vi~sght~~g~NiG---GL-----~gdfHrvs~tlp~wqs 127 (180)
T PF06483_consen 72 TEFEFDYPTSAPDNAKDQSGFGLKVISSGHTAAGNNIG---GL-----KGDFHRVSFTLPAWQS 127 (180)
T ss_pred cEEEEccccCCccccccccCCcEEEEecCCcccCCccc---cc-----CCceEEEEEECCCccc
Confidence 34666664332111234568888877654432211222 23 4556778888877765
No 220
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=24.46 E-value=71 Score=34.10 Aligned_cols=33 Identities=18% Similarity=0.055 Sum_probs=27.3
Q ss_pred CCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 363 SELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 363 s~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
..-..+|.|.||.|.-++-+....+|.||.+.+
T Consensus 564 ttlq~lG~GAyGkV~lai~K~n~~eVViK~I~K 596 (772)
T KOG1152|consen 564 TTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFK 596 (772)
T ss_pred eeeeeccccccceEEEeeecccceEEEeeehhh
Confidence 334689999999999999877777799998865
No 221
>PRK11901 hypothetical protein; Reviewed
Probab=23.45 E-value=97 Score=30.43 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCCCcceeEEcCCCCCCCCcCcccCeEEecceEEeC
Q 042239 4 CLYYCFFLLVSIEVFSILVDSSPEISARKHVFFPDFSLHNNSKILHDLKLLGSAKLSN 61 (413)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~f~~~~~~~~~~~l~l~G~A~~~~ 61 (413)
-.=|||||||+|.+=.+|=+|. ..... -..=...+ +++|.|.|....++
T Consensus 41 GiGilVLlLLIi~IgSALksP~---~~~~~--q~~~~~~~----~knIdLS~sss~~~ 89 (327)
T PRK11901 41 GIGILVLLLLIIAIGSALKSPT---EHESQ--QSSNNAGA----EKNIDLSGSSSLSS 89 (327)
T ss_pred HHHHHHHHHHHHHHhhhccCCC---CCccc--cccccccc----ccceecCCCCcccC
Confidence 3558999999999999888751 11100 00011101 27899999988764
No 222
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=23.21 E-value=85 Score=28.48 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=24.8
Q ss_pred CCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 364 ELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 364 ~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
....|++|.++.||.|...++ . +|+|.=..+
T Consensus 26 v~~~L~KG~~s~Vyl~~~~~~-~-~a~Kvrr~d 56 (201)
T COG2112 26 VEKELAKGTTSVVYLGEWRGG-E-VALKVRRRD 56 (201)
T ss_pred hhhhhhcccccEEEEeeccCc-e-EEEEEecCC
Confidence 357899999999999998765 3 888876554
No 223
>PF15345 TMEM51: Transmembrane protein 51
Probab=22.87 E-value=94 Score=28.96 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=5.0
Q ss_pred EEEEEeecC
Q 042239 388 VAGKRFSSQ 396 (413)
Q Consensus 388 VAVKrl~~~ 396 (413)
.-|.||+.+
T Consensus 194 lkvRRIKSe 202 (233)
T PF15345_consen 194 LKVRRIKSE 202 (233)
T ss_pred ceEEEeccc
Confidence 556666543
No 224
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]
Probab=22.33 E-value=39 Score=36.48 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=23.6
Q ss_pred CceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
-..+|.|.+|.|||+.-.......|||.++-
T Consensus 20 lqrvgsgTygdvyKaRd~~s~elaavkvVkL 50 (829)
T KOG0576|consen 20 LQRVGSGTYGDVYKARDKRSGELAAVKVVKL 50 (829)
T ss_pred eeeecCCcccchhhhcccccCchhhheeeec
Confidence 3689999999999998543333389998864
No 225
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=22.28 E-value=6e+02 Score=30.63 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=22.8
Q ss_pred ccCCCCeEEEEEEEeCCCcEEEEEEEecC
Q 042239 200 FLNDGSVHRAWIAYDGTRGWMDVRIGSDG 228 (413)
Q Consensus 200 ~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~ 228 (413)
-++||++|+|..+|-. |...|+++..+
T Consensus 1394 gvsDGqWHtV~l~YyN--K~av~svDdCd 1420 (2531)
T KOG4289|consen 1394 GVSDGQWHTVQLEYYN--KVAVVSVDDCD 1420 (2531)
T ss_pred CcccCceeEEEEEEec--eEEEEEecccc
Confidence 5789999999999966 88888888543
No 226
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.16 E-value=41 Score=32.40 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=24.3
Q ss_pred CCceeccCCCceEEEEEeC-CCCeeEEEEEeec
Q 042239 364 ELECLGSDYRGVYYRGKLP-NGRQPVAGKRFSS 395 (413)
Q Consensus 364 ~~~~LG~G~fG~VYkG~L~-~g~~~VAVKrl~~ 395 (413)
.++-||-|.||.|+.-+-| +|.. ||.||+-.
T Consensus 57 PDRPIGYGAFGVVWsVTDPRdgrr-valkK~pn 88 (449)
T KOG0664|consen 57 PDRPIGYGAFGVVWSVTDPRSGKR-VALKKMPN 88 (449)
T ss_pred CCCcccccceeEEEeccCCCCccc-hhHhhcch
Confidence 3678999999999987764 4555 99999843
No 227
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=21.83 E-value=1.1e+02 Score=27.54 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=23.8
Q ss_pred cCCCCeEEEEEEEeCCCcEEEEEEEe
Q 042239 201 LNDGSVHRAWIAYDGTRGWMDVRIGS 226 (413)
Q Consensus 201 l~~g~~~~v~I~Y~~~~~~L~V~l~~ 226 (413)
..+|.+|++-+.||+.++++.+|++.
T Consensus 87 ~~~g~W~hv~~t~d~~~g~~~lyvnG 112 (201)
T cd00152 87 ESDGAWHHICVTWESTSGIAELWVNG 112 (201)
T ss_pred CCCCCEEEEEEEEECCCCcEEEEECC
Confidence 47899999999999999999999983
No 228
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=21.74 E-value=32 Score=36.58 Aligned_cols=25 Identities=24% Similarity=0.111 Sum_probs=19.3
Q ss_pred CceeccCCCceEEEEEeCCCCeeEE
Q 042239 365 LECLGSDYRGVYYRGKLPNGRQPVA 389 (413)
Q Consensus 365 ~~~LG~G~fG~VYkG~L~~g~~~VA 389 (413)
+.+||+|.|-+||||.=...+++||
T Consensus 45 ~evLGrGafKtVYka~De~~giEVA 69 (632)
T KOG0584|consen 45 DEVLGRGAFKTVYKAFDEEEGIEVA 69 (632)
T ss_pred hhhcccccceeeeeccccccchhhH
Confidence 5789999999999998655444354
No 229
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=21.64 E-value=2.1e+02 Score=26.34 Aligned_cols=67 Identities=13% Similarity=0.216 Sum_probs=41.4
Q ss_pred cCeEEecceEEeCCCCeEEcCCCCCCcCCCCceEEEEecCceeecCCCCCCccceEEEEEEEEecCCCCCCCCCCCCcEE
Q 042239 49 HDLKLLGSAKLSNEKRVIQIPDDSQATDLRHQAGRAIYSSPVRLLDPVTKTPTSFETTFSFQFNTSNNTRTSRDGGSSLT 128 (413)
Q Consensus 49 ~~l~l~G~A~~~~~~~~i~LT~~~~~~~~~~~~G~~~y~~pv~l~~~~~~~~~sF~t~F~f~i~~~~~~~~~~~~gdGla 128 (413)
.++.++|.+.++..+|.++|..... +....+.-+..+-.|..+-+ ....+..|+..... |||
T Consensus 18 ~~w~~eG~~~~t~~~~~m~l~~~~~-~e~~~~~~hfVlW~p~~Fp~-------~i~IsweF~p~~ep----------GLa 79 (218)
T PF09224_consen 18 ADWVAEGPAKVTFQNGRMELSGELD-PEQFGDAAHFVLWCPEVFPD-------DIRISWEFTPLAEP----------GLA 79 (218)
T ss_dssp TT-EEEESEEEE-GGGSEEEE-------ESSTT--EEEE-SS-B-S-------SEEEEEEEEEEE-S----------EEE
T ss_pred hhhhccCCeEEeecCCcEEEeeeec-cccccccccEEEECcccCCC-------CeEEEEEEEEcCCC----------CEE
Confidence 7899999999987688999974321 00125667888888888876 58889999988764 677
Q ss_pred EEEec
Q 042239 129 FIIVP 133 (413)
Q Consensus 129 F~l~~ 133 (413)
.++-.
T Consensus 80 mlfF~ 84 (218)
T PF09224_consen 80 MLFFA 84 (218)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 66543
No 230
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=21.34 E-value=5.9e+02 Score=29.70 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=39.2
Q ss_pred CCCceEEEEeeecccCccCCCCCCceeEecCCCcccccccCCCCccccCCCCeEEEEEEEeCCCcEEEEE
Q 042239 154 DDYKAVAVKFDTCRDLEFGGPNDNHVGINLGSIVSTRAINASDVGIFLNDGSVHRAWIAYDGTRGWMDVR 223 (413)
Q Consensus 154 g~~~~vAVEfDT~~n~~~~dp~~~Hvgi~~ns~~s~~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~ 223 (413)
|++..+-||.-+-.+ --.++|+++..+.-+.... ..++|+++|+|.++=|...-+|.|-
T Consensus 831 g~~dfir~eL~~~~~--------vtf~~dvgnGp~~~~V~s~---t~~nD~qWH~V~~Ern~K~a~LqVD 889 (1306)
T KOG3516|consen 831 GINDFIRLELSSPVE--------VTFAFDVGNGPSQLTVRSP---TELNDNQWHQVRAERNSKEASLQVD 889 (1306)
T ss_pred CCCceEEEEEcCCCc--------eEEEEEcCCCceeEEEcCC---cccCCCceEEEEEEeccccceEEEc
Confidence 356677777554332 2366777765544443332 3688999999999999977777763
No 231
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=21.28 E-value=1.3e+02 Score=25.05 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=21.2
Q ss_pred CCeEEEEEEEeCCCcEEEEEEEe
Q 042239 204 GSVHRAWIAYDGTRGWMDVRIGS 226 (413)
Q Consensus 204 g~~~~v~I~Y~~~~~~L~V~l~~ 226 (413)
|+++++.+.||+..+.+++|++.
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvnG 83 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVNG 83 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEECC
Confidence 88999999999999999999973
No 232
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.08 E-value=36 Score=33.62 Aligned_cols=37 Identities=19% Similarity=0.102 Sum_probs=26.3
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeecC
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSSQ 396 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~~ 396 (413)
++|+--.+||+|.||.|--..-+......|+|.|+..
T Consensus 168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKe 204 (516)
T KOG0690|consen 168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKE 204 (516)
T ss_pred chhhHHHHhcCCccceEEEEeecccCceeehhhhhhh
Confidence 4465567899999999986654443333899988654
No 233
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=20.71 E-value=64 Score=29.55 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=14.1
Q ss_pred cchh-hHHHHHHHHHHHHHHhcc
Q 042239 2 DICL-YYCFFLLVSIEVFSILVD 23 (413)
Q Consensus 2 ~~~~-~~~~~~l~~~~~~~~~~~ 23 (413)
=||| -|.||+|+|.+||+--+.
T Consensus 131 LIClIIIAVLfLICT~LfLSTVV 153 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLFLSTVV 153 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3564 456777777777776554
No 234
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=20.33 E-value=33 Score=34.40 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=26.3
Q ss_pred cCCCCCceeccCCCceEEEEEeCCCCeeEEEEEeec
Q 042239 360 RAFSELECLGSDYRGVYYRGKLPNGRQPVAGKRFSS 395 (413)
Q Consensus 360 ~~Fs~~~~LG~G~fG~VYkG~L~~g~~~VAVKrl~~ 395 (413)
+.+.--.++|+|.||.|-+..-......||||.++.
T Consensus 89 ~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~ 124 (415)
T KOG0671|consen 89 NRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKN 124 (415)
T ss_pred cceehhhhhcCCcccceEEEeecCCCceehHHHHHH
Confidence 334335679999999999987654444599998754
No 235
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=20.01 E-value=1.6e+02 Score=27.32 Aligned_cols=15 Identities=7% Similarity=0.388 Sum_probs=7.2
Q ss_pred HHHHHHhhhhhhccc
Q 042239 315 LVIFLAMYCISRRQR 329 (413)
Q Consensus 315 l~~~~~~~~~~rr~~ 329 (413)
+++++.+|..||++.
T Consensus 204 vf~LvgLyr~C~k~d 218 (259)
T PF07010_consen 204 VFTLVGLYRMCWKTD 218 (259)
T ss_pred HHHHHHHHHHhhcCC
Confidence 344444555555543
Done!