BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042240
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 29/42 (69%)
Query: 98 PSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
P S +SS KTELCR EE G C++G KCQFAHG ELRS
Sbjct: 105 PGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS 146
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
KTELCR+ +G C +G +C F H EE R+
Sbjct: 154 KTELCRTFHTIGFCPYGPRCHFIHNAEERRA 184
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 29/42 (69%)
Query: 98 PSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
P S +SS KTELCR EE G C++G KCQFAHG ELRS
Sbjct: 105 PGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS 146
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
KTELCR+ +G C +G +C F H EE R+
Sbjct: 154 KTELCRTFHTIGFCPYGPRCHFIHNAEERRA 184
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 28/42 (66%)
Query: 98 PSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
P +SS KTELCR EE G C++G KCQFAHG ELRS
Sbjct: 105 PGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS 146
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
KTELCR+ +G C +G +C F H EE R+
Sbjct: 154 KTELCRTFHTIGFCPYGPRCHFIHNAEERRA 184
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 96 PSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRST 140
P P ++S KTELCR EE G C++G KCQFAHG ELR+
Sbjct: 124 PLPPQQPMNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNV 168
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEE 136
KTE CR+ VG C +G +C F H +E
Sbjct: 175 KTEYCRTFHSVGFCPYGPRCHFVHNADE 202
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
+S+ KTELCR EE G C++G KCQFAHG ELRS
Sbjct: 128 NSTRYKTELCRPFEESGACKYGEKCQFAHGFHELRS 163
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTELCR+ +G C +G +C F H EE R
Sbjct: 171 KTELCRTFHTIGFCPYGPRCHFIHNAEERR 200
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
+S+ KTELCR EE G C++G KCQFAHG ELRS
Sbjct: 130 NSTRYKTELCRPFEENGACKYGEKCQFAHGFHELRS 165
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTELCR+ +G C +G +C F H EE R
Sbjct: 173 KTELCRTFHTIGFCPYGPRCHFIHNAEERR 202
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
+S+ KTELCR EE G C++G KCQFAHG ELRS
Sbjct: 98 NSTRYKTELCRPFEESGACKYGEKCQFAHGFHELRS 133
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMEDHSM 168
KTELCR+ +G C +G +C H EE R P + ++ + +HS+
Sbjct: 141 KTELCRTFHTIGFCPYGPRCHLIHNAEERRQA--PGAGERPKLHHSLSFS---GFPNHSL 195
Query: 169 KASVCESPVT 178
+ + ESP +
Sbjct: 196 DSPLLESPTS 205
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 29/41 (70%)
Query: 99 SSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
S S +S+ KTELCR EE G C++G KCQFAHG ELRS
Sbjct: 118 SGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS 158
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTELCR+ +G C +G +C F H +E R
Sbjct: 166 KTELCRTFHTIGFCPYGPRCHFIHNADERR 195
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
+S+ KTELCR EE G C++G KCQFAHG ELRS
Sbjct: 150 NSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS 185
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTELCR+ +G C +G +C F H +E R
Sbjct: 193 KTELCRTFHTIGFCPYGPRCHFIHNADERR 222
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTELCR+ E G CR+G KCQFAHG ELR
Sbjct: 98 KTELCRTYSESGRCRYGAKCQFAHGPGELR 127
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTELCR+ E G CR+G KCQFAHG ELR
Sbjct: 97 KTELCRTYSESGRCRYGAKCQFAHGLGELR 126
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTELCR+ E G CR+G KCQFAHG ELR
Sbjct: 105 KTELCRTFSESGRCRYGAKCQFAHGLGELR 134
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEE 136
KTELC G C +G++C F H E
Sbjct: 143 KTELCHKFYLQGRCPYGSRCHFIHNPSE 170
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTELCR+ E G CR+G KCQFAHG ELR
Sbjct: 103 KTELCRTFSESGRCRYGAKCQFAHGLGELR 132
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEE 136
KTELC G C +G++C F H E
Sbjct: 141 KTELCHKFYLQGRCPYGSRCHFIHNPSE 168
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTELCR+ E G CR+G KCQFAHG ELR
Sbjct: 103 KTELCRTFSESGRCRYGAKCQFAHGLGELR 132
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEE 136
KTELC G C +G++C F H E
Sbjct: 141 KTELCHKFYLQGRCPYGSRCHFIHNPSE 168
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTE C++ + G CR+G+KCQFAHG +EL+
Sbjct: 328 KTEPCKNWQISGTCRYGSKCQFAHGNQELK 357
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTELC S G C++G KCQFAHG EL+
Sbjct: 206 KTELCESFTIKGYCKYGNKCQFAHGLNELK 235
>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis
thaliana GN=At3g19360 PE=2 SV=1
Length = 386
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 83 LPIMRYSPSPSPSPSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTL 141
+ + R P P+P + + KT LC + G C FG KC FAHG+ EL +++
Sbjct: 245 IEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSV 303
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 92 PSPSPSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELR 138
PS +P P + +++ KT +C ++ G CR G C FAHG E+LR
Sbjct: 89 PSLNPPPVNKGTANIFYKTRMC-AKFRAGTCRNGELCNFAHGIEDLR 134
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELRSTL 141
KTELC EE G C +G +CQFAHG ELR +
Sbjct: 270 KTELCNKWEETGACPYGDQCQFAHGVAELRPVI 302
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTELC EE G C +G +CQFAHG ELR
Sbjct: 260 KTELCNKWEETGDCPYGDQCQFAHGVTELR 289
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTELC +E G C +G CQFAHG +ELR
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELR 263
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 108 SKTELCRSREEVGMCRFGTKCQFAHGKEELR 138
+KTELC +E G C +G CQFAHG +ELR
Sbjct: 223 TKTELCNKWQETGTCPYGDHCQFAHGIKELR 253
>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa
subsp. japonica GN=Os06g0618100 PE=2 SV=1
Length = 295
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 85 IMRYSPSPSPSPSPSSSSSSS---SSSKTELCRSREEVGMCRFGTKCQFAHGKEELR 138
I+R S + P+ +P S + S+ KT+LC + + G C FG +C FAHG+ ELR
Sbjct: 234 IVRISGNAPPAKNPGRGSHAGGPGSNFKTKLCENFNK-GSCTFGDRCHFAHGESELR 289
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 105 SSSSKTELCRSREEVGMCRFGTKCQFAHGKEEL 137
+SS KT +C C++G+KC FAHG+ EL
Sbjct: 96 TSSVKTRMCNKYNTAEGCKWGSKCHFAHGEREL 128
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 106 SSSKTELCRSREEVGMCRFGTKCQFAHGKEELR 138
S+ KT +C E G C FG+KC FAHG EL
Sbjct: 244 SNWKTRICNKWEMTGYCPFGSKCHFAHGAAELH 276
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KT+LC + G C + T C FAHG EELR
Sbjct: 89 KTKLC-CKFRAGTCPYVTNCNFAHGMEELR 117
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KTELC S G C +G+KCQFAHG EL+
Sbjct: 171 KTELCESFTLKGSCPYGSKCQFAHGLGELK 200
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 106 SSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTL 141
++KTELC ++ E G C +G +C+FAHG +ELR +
Sbjct: 381 GAAKTELC-NKWERGACPYGARCRFAHGLQELRPVI 415
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 106 SSSKTELCRSREEVGMCRFGTKCQFAHGKEELR 138
S+ KT +C E G C FG KC FAHG EL
Sbjct: 259 SNWKTRICNKWEITGYCPFGAKCHFAHGAAELH 291
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KT+LC + G C + T C FAH EELR
Sbjct: 93 KTKLC-CKFRAGTCPYITNCNFAHTVEELR 121
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 96 PSPSSSSSSSSSSKTELCRSREE-VGMCRFGTKCQFAHGKEELRST----LFPTTKNKSE 150
P P + S + KT LC + C G +C+FAHG +ELR+T +P K K++
Sbjct: 259 PIPETDSQQPPNYKTRLCMMHASGIKPCDMGARCKFAHGLKELRATDAPARYPNNKYKTK 318
Query: 151 VMTDSA 156
+ + A
Sbjct: 319 LCKNFA 324
>sp|Q9HBD1|RC3H2_HUMAN RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Homo sapiens GN=RC3H2 PE=1 SV=2
Length = 1191
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 79 VMDGLP--IMRYSPSPSPSPSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEE 136
V+ GL I YS +P P +S KT +CR + G C GT C FAH +EE
Sbjct: 384 VVHGLVDFIQNYSRKGHETPQPQPNSKY----KTSMCRDLRQQGGCPRGTNCTFAHSQEE 439
Query: 137 LRSTLFPTTKNKSEVMT 153
L K + V T
Sbjct: 440 LEKYRLRNKKINATVRT 456
>sp|P0C090|RC3H2_MOUSE RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Mus musculus GN=Rc3h2 PE=2 SV=1
Length = 1187
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 79 VMDGLP--IMRYSPSPSPSPSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEE 136
V+ GL I YS +P P +S KT +CR + G C GT C FAH +EE
Sbjct: 384 VVHGLVDFIQNYSRKGHETPQPQPNSKY----KTSMCRDLRQQGGCPRGTNCTFAHSQEE 439
Query: 137 LRSTLFPTTKNKSEVMT 153
L K + V T
Sbjct: 440 LEKYRLRNKKMSATVRT 456
>sp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa
subsp. japonica GN=Os04g0665700 PE=2 SV=1
Length = 309
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 97 SPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEEL 137
+ +S +SS KT +C C+FG KC FAHG+ EL
Sbjct: 93 AAGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGEREL 133
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
KT+LC + + G C FG +C FAHG+ E R
Sbjct: 277 KTKLCENFVK-GTCTFGDRCHFAHGENEQR 305
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 98 PSSSSSSSSSSKTELCRSREE-VGMCRFGTKCQFAHGKEELRS----TLFPTTKNKSEVM 152
P S + KT LC + + C G +C+FAHG +ELR+ T +P K K+++
Sbjct: 264 PEVDSQLPHNFKTRLCMTHAAGINPCALGARCKFAHGLKELRASDIPTRYPNNKYKTKLC 323
Query: 153 TDSA 156
+ A
Sbjct: 324 KNFA 327
>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis
thaliana GN=At2g35430 PE=2 SV=1
Length = 252
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSAL 157
KT +C + G C FG+ C FAHG EL + + + ++ T + L
Sbjct: 145 KTRICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGLVEGECKIGTSATL 193
>sp|Q8GVZ8|C3H48_ORYSJ Putative zinc finger CCCH domain-containing protein 48 OS=Oryza
sativa subsp. japonica GN=Os07g0139000 PE=4 SV=1
Length = 496
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEEL 137
KT+LC++ G+C F C+FAHG+ EL
Sbjct: 441 KTKLCKTFTSGGLCLFAANCRFAHGEVEL 469
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 109 KTELCRSREEVGM-CRFGTKCQFAHGKEELR 138
KT+LC G+ C G C++AHG+++LR
Sbjct: 379 KTKLCAEYYSRGLGCPRGNTCKYAHGEDDLR 409
>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa
subsp. japonica GN=Os02g0194200 PE=2 SV=1
Length = 300
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 106 SSSKTELCRSREEVGMCRFGTKCQFAHGKEELR 138
S+ KT+LC + + G C FG +C FAHG+ ELR
Sbjct: 264 SNFKTKLCENFTK-GSCTFGDRCHFAHGENELR 295
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEEL 137
KT LC C++G KC FAHG+ EL
Sbjct: 101 KTRLCNKYNTAEGCKWGDKCHFAHGEREL 129
>sp|Q9FG30|C3H52_ARATH Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis
thaliana GN=At5g06770 PE=2 SV=1
Length = 240
Score = 37.7 bits (86), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 92 PSPSPSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELR 138
P P S+ KT++C R G C +G +C FAHG+ ELR
Sbjct: 190 PQGIGGPEGKPHPGSNYKTKIC-DRYSKGNCTYGDRCHFAHGESELR 235
>sp|Q5VR07|C3H1_ORYSJ Zinc finger CCCH domain-containing protein 1 OS=Oryza sativa subsp.
japonica GN=Os01g0174600 PE=2 SV=1
Length = 279
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELRSTL 141
KT +C + G C F C FAHG EELR +L
Sbjct: 58 KTRVCETFVTSGRCMFEDGCTFAHGDEELRPSL 90
>sp|Q8GW05|C3H47_ORYSJ Zinc finger CCCH domain-containing protein 47 OS=Oryza sativa
subsp. japonica GN=Os07g0138400 PE=2 SV=1
Length = 388
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELR 138
+++ K LC S+ G C G C+++HG+EE R
Sbjct: 318 ANAHHKIALC-SKWRKGRCHNGAACRYSHGEEEQR 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.118 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,804,329
Number of Sequences: 539616
Number of extensions: 3282498
Number of successful extensions: 42175
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 550
Number of HSP's that attempted gapping in prelim test: 28471
Number of HSP's gapped (non-prelim): 6109
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)