Query 042240
Match_columns 241
No_of_seqs 164 out of 634
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:57:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.7 7.9E-19 2.7E-23 128.6 3.4 71 102-173 4-76 (77)
2 2d9m_A Zinc finger CCCH-type d 99.1 1.1E-12 3.9E-17 97.2 -3.2 49 106-155 16-64 (69)
3 2cqe_A KIAA1064 protein; CCCH 99.1 1.1E-10 3.7E-15 90.7 4.4 52 104-171 7-60 (98)
4 2d9n_A Cleavage and polyadenyl 98.8 2E-09 6.8E-14 79.8 4.1 58 103-172 3-62 (77)
5 2rhk_C Cleavage and polyadenyl 98.5 2.3E-08 7.8E-13 73.6 1.4 56 106-172 12-68 (72)
6 3d2q_A Muscleblind-like protei 98.5 5.3E-08 1.8E-12 71.0 2.4 59 108-171 4-64 (70)
7 2e5s_A Otthump00000018578; ZF- 98.4 6.6E-08 2.2E-12 75.2 2.1 67 101-172 11-79 (98)
8 1m9o_A Tristetraproline; Cys3H 98.4 4.1E-08 1.4E-12 71.4 0.0 32 105-136 45-76 (77)
9 3d2n_A Muscleblind-like protei 97.8 1.1E-05 3.7E-10 61.1 2.6 60 106-172 5-66 (83)
10 2rpp_A Muscleblind-like protei 97.4 8.5E-05 2.9E-09 57.0 3.6 59 106-171 13-73 (89)
11 2d9n_A Cleavage and polyadenyl 96.8 0.00054 1.9E-08 50.3 2.2 37 109-156 37-73 (77)
12 2fc6_A Nuclear, target of EGR1 96.7 0.00036 1.2E-08 48.7 0.5 29 107-135 17-45 (50)
13 2cqe_A KIAA1064 protein; CCCH 96.6 0.00047 1.6E-08 53.2 1.1 26 110-135 36-61 (98)
14 3d2q_A Muscleblind-like protei 96.4 0.00078 2.7E-08 48.7 0.9 33 105-139 37-69 (70)
15 2d9m_A Zinc finger CCCH-type d 95.1 0.0053 1.8E-07 45.4 0.8 26 146-172 17-44 (69)
16 2rhk_C Cleavage and polyadenyl 94.9 0.005 1.7E-07 44.9 0.3 29 108-137 42-70 (72)
17 2e5s_A Otthump00000018578; ZF- 94.5 0.0083 2.8E-07 46.3 0.6 32 106-139 52-83 (98)
18 2fc6_A Nuclear, target of EGR1 88.5 0.15 5.2E-06 35.5 1.2 26 147-172 18-45 (50)
19 3u1l_A PRE-mRNA-splicing facto 88.2 0.11 3.7E-06 45.6 0.4 23 111-134 71-93 (240)
20 3d2n_A Muscleblind-like protei 85.7 0.17 5.9E-06 37.9 0.3 31 107-139 40-70 (83)
21 2rpp_A Muscleblind-like protei 72.3 0.69 2.4E-05 35.1 -0.2 31 107-139 48-78 (89)
22 3u9g_A Zinc finger CCCH-type a 71.7 2.1 7.3E-05 37.9 2.7 55 110-166 89-171 (229)
23 3v33_A Ribonuclease ZC3H12A; r 65.0 1.3 4.6E-05 38.9 0.0 26 107-135 189-214 (223)
24 2kqb_A Aprataxin and PNK-like 60.1 4.9 0.00017 30.9 2.3 10 120-129 15-24 (89)
25 3u9g_A Zinc finger CCCH-type a 37.4 11 0.00037 33.3 1.2 29 107-135 148-179 (229)
26 2lhn_A Nuclear polyadenylated 28.1 18 0.00063 26.9 0.0 20 111-134 10-29 (80)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.73 E-value=7.9e-19 Score=128.60 Aligned_cols=71 Identities=38% Similarity=0.535 Sum_probs=36.4
Q ss_pred CCCCCCcchhhccccccCCcCCCCCCccccCCccccccCCCCCCCCccccccccccccCCCCCCC--CcCcccc
Q 042240 102 SSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMEDH--SMKASVC 173 (241)
Q Consensus 102 ~~~~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~r--f~H~~~s 173 (241)
.+.+.+|||+||++|...|.|+||++|+|||+.+||+....++ .+||.+|+.|...|.|+||.+ |+|...+
T Consensus 4 ~~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 4 MTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp CCCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------
T ss_pred CCCCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccc-cccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 3456799999999998889999999999999999999876666 899999999999999999975 6786643
No 2
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.1e-12 Score=97.25 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=38.8
Q ss_pred CCcchhhccccccCCcCCCCCCccccCCccccccCCCCCCCCcccccccc
Q 042240 106 SSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDS 155 (241)
Q Consensus 106 ~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F 155 (241)
...|++||++|. .|.|+||++|+||||++||+.-...+...|+++++..
T Consensus 16 P~~k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~Ar 64 (69)
T 2d9m_A 16 PTGYFSICDRYM-NGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKAS 64 (69)
T ss_dssp CCSCCSBCHHHH-HSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSCC
T ss_pred CCCCcccCcccC-cCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHHh
Confidence 345779999995 7899999999999999999974433346777777743
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.05 E-value=1.1e-10 Score=90.75 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=44.8
Q ss_pred CCCCcchhhccccccCCcCCCCCCccccCCccccccCCCCCCCCccccccccccccCCCCCCC--CcCcc
Q 042240 104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMEDH--SMKAS 171 (241)
Q Consensus 104 ~~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~r--f~H~~ 171 (241)
....+|++||++|. .|.|.+|++|.|+|+ +.+|+.|...|.|++|.+ |+|..
T Consensus 7 ~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~ 60 (98)
T 2cqe_A 7 GELPKKRELCKFYI-TGFCARAENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDP 60 (98)
T ss_dssp CCCSCCCSBCTTTT-TTCCSCSTTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCC
T ss_pred CCCCCCCccCcccc-cCcCCCCCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCC
Confidence 34568999999997 799999999999999 568998878999999964 67764
No 4
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=2e-09 Score=79.78 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=46.7
Q ss_pred CCCCCcchhhccccccCCcCCCCCCccccCCccccccCCCCCCCCccccccccccccCCCCCCC--CcCccc
Q 042240 103 SSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMEDH--SMKASV 172 (241)
Q Consensus 103 ~~~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~r--f~H~~~ 172 (241)
.....+|+++|++|.. |.|.+|++|.|+|+.... ++.+|+.|...|.|. |.+ |+|...
T Consensus 3 p~~~~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~----------~~~~C~~f~~~G~C~-~~~C~f~H~~~ 62 (77)
T 2d9n_A 3 SGSSGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT----------KMPECYFYSKFGECS-NKECPFLHIDP 62 (77)
T ss_dssp CCCSCCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT----------TSCBCHHHHHTCCCC-CSSCSSBCCCT
T ss_pred CCCCCCcceeCHhHcc-CcCCCCCCCCCccccccC----------cCCCCcccCCCCccC-CCCeeccCCCc
Confidence 3445789999999995 999999999999987632 456899887669999 764 678764
No 5
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.51 E-value=2.3e-08 Score=73.63 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=44.6
Q ss_pred CCcchhhccccccCCcCCCCCCccccCCccccccCCCCCCCCccccccccccccCCCCCC-CCcCccc
Q 042240 106 SSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMED-HSMKASV 172 (241)
Q Consensus 106 ~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~-rf~H~~~ 172 (241)
...|+++|++|.. |.|.+|++|.|+|.... .++.+|+.|...|.|.+.. +|.|...
T Consensus 12 ~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~----------~~~~~C~~f~~~G~C~~~~C~y~H~~p 68 (72)
T 2rhk_C 12 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDM----------TKMSECYFYSKFGECSNKECPFLHIDP 68 (72)
T ss_dssp SCCCCSBCHHHHT-TCCCCGGGSSSBCSCCT----------TSCCBCHHHHHHSCCSBTTCCSBCCCC
T ss_pred CCCcCeeCHHHhc-CCCCCCCCCCCcccccc----------ccCCcccccCCCCCCCCCCeeccCCCc
Confidence 4678999999995 99999999999998542 2567899886669999943 3677654
No 6
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.46 E-value=5.3e-08 Score=70.95 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=48.0
Q ss_pred cchhhccccccCCcCCCCC-CccccCCccccccCCCCCCCCccccccccccccCCCCCC-CCcCcc
Q 042240 108 SKTELCRSREEVGMCRFGT-KCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMED-HSMKAS 171 (241)
Q Consensus 108 yKT~LCr~f~~~G~C~yGd-kC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~-rf~H~~ 171 (241)
.|.++|+.|. .|.|..|+ .|.|+|..+++.... ...++.+|..| ..|.|..|. +|+|..
T Consensus 4 ~k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~~~---~~~~~~vC~~f-lkG~C~r~~C~y~H~~ 64 (70)
T 3d2q_A 4 DRLEVCREYQ-RGNCNRGENDCRFAHPADSTMIDT---NDNTVTVCMDY-IKGRCSREKCKYFHPP 64 (70)
T ss_dssp CEEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCCBT---TTTEEEBCHHH-HTTCCCCTTCCSBCCC
T ss_pred ccchhCHHHh-cCCCCCCCCCCCCccCcccccccc---cCCcceecccc-CcCCCCCCCcCeeCCH
Confidence 4778999997 79999999 699999998876432 25789999977 569999995 488854
No 7
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=6.6e-08 Score=75.23 Aligned_cols=67 Identities=22% Similarity=0.361 Sum_probs=53.2
Q ss_pred CCCCCCCcchhhccccccCCcCCCCC-CccccCCccccccCCCCCCCCccccccccccccCCCCCC-CCcCccc
Q 042240 101 SSSSSSSSKTELCRSREEVGMCRFGT-KCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMED-HSMKASV 172 (241)
Q Consensus 101 ~~~~~~~yKT~LCr~f~~~G~C~yGd-kC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~-rf~H~~~ 172 (241)
........|.++|+.|.. |.|..|+ .|.|+|..++++... ...++.+|..| ..|.|.+|. +|+|...
T Consensus 11 ~~K~~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~~---~~~~~~vC~~f-lkG~C~r~~C~y~H~~~ 79 (98)
T 2e5s_A 11 TQKLLRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMIDT---SDNTVTVCMDY-IKGRCMREKCKYFHPPA 79 (98)
T ss_dssp CCCCCCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCCT---TTCEEEBCHHH-HHTCCCCTTCCSBCCCH
T ss_pred cccccChhhhhhhHHHhc-CcCCCCCCCCCCcCCchhccccc---cCCccccchhh-ccCCCCCCCcCccCChH
Confidence 344556778899999995 9999999 899999998876432 35788999976 679999995 5888553
No 8
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.38 E-value=4.1e-08 Score=71.37 Aligned_cols=32 Identities=38% Similarity=0.804 Sum_probs=0.0
Q ss_pred CCCcchhhccccccCCcCCCCCCccccCCccc
Q 042240 105 SSSSKTELCRSREEVGMCRFGTKCQFAHGKEE 136 (241)
Q Consensus 105 ~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~E 136 (241)
...+||++|++|...|.|+||++|+|+|+..|
T Consensus 45 ~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 45 HPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp --------------------------------
T ss_pred cccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 45799999999998999999999999999876
No 9
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.75 E-value=1.1e-05 Score=61.09 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=47.3
Q ss_pred CCcchhhccccccCCcCCCCC-CccccCCccccccCCCCCCCCccccccccccccCCCCCC-CCcCccc
Q 042240 106 SSSKTELCRSREEVGMCRFGT-KCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMED-HSMKASV 172 (241)
Q Consensus 106 ~~yKT~LCr~f~~~G~C~yGd-kC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~-rf~H~~~ 172 (241)
...|.++|+.|.. |.|..|+ .|.|||....+... ..+..+|..| ..|.|..+. +|+|...
T Consensus 5 ~~~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~-----~~~~~vC~df-lkG~C~r~~C~y~H~~~ 66 (83)
T 3d2n_A 5 KWLTLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE-----NGRVIACFDS-LKGRCSRENCKYLHPPP 66 (83)
T ss_dssp GGGEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE-----TTEEECCHHH-HTTCCCCSSCSSCCCCH
T ss_pred ccccchhcHHHhc-CCCCCCCCCCCCcCCCcccccc-----CCceeehhHh-hhccccCCCcceeCChH
Confidence 3567899999995 9999997 99999998765432 3467899977 679999995 5888543
No 10
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.44 E-value=8.5e-05 Score=56.96 Aligned_cols=59 Identities=22% Similarity=0.364 Sum_probs=46.3
Q ss_pred CCcchhhccccccCCcCCCCC-CccccCCccccccCCCCCCCCccccccccccccCCCCCC-CCcCcc
Q 042240 106 SSSKTELCRSREEVGMCRFGT-KCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMED-HSMKAS 171 (241)
Q Consensus 106 ~~yKT~LCr~f~~~G~C~yGd-kC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~-rf~H~~ 171 (241)
...|.++|+.|+. |.|..|+ .|.|||....+... ..+..+|..| ..|.|..+. +|+|..
T Consensus 13 ~~~~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~-----~~~~~vC~df-lkG~C~r~~Cky~H~~ 73 (89)
T 2rpp_A 13 KWLTLEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE-----NGRVIACFDS-LKGRCSRENCKYLHPP 73 (89)
T ss_dssp SSSEECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB-----TTBEEBCHHH-HHTCCCCTTCCSBCCC
T ss_pred CcchhhhchHHhc-CCCCCCCCCCCCcCCCcccccc-----CCceeeehhh-hhCcCCCCCcceecCH
Confidence 3456789999995 9999998 99999988764322 3467899977 689999985 588854
No 11
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.77 E-value=0.00054 Score=50.34 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=30.2
Q ss_pred chhhccccccCCcCCCCCCccccCCccccccCCCCCCCCccccccccc
Q 042240 109 KTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSA 156 (241)
Q Consensus 109 KT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F~ 156 (241)
|+.+|++|+..|.|. |++|.|+|...+ .++.+|+.|.
T Consensus 37 ~~~~C~~f~~~G~C~-~~~C~f~H~~~~----------~~~~~C~~f~ 73 (77)
T 2d9n_A 37 KMPECYFYSKFGECS-NKECPFLHIDPE----------SKIKDCPWSG 73 (77)
T ss_dssp TSCBCHHHHHTCCCC-CSSCSSBCCCTT----------SSCSSSSCCT
T ss_pred cCCCCcccCCCCccC-CCCeeccCCCcc----------ccCCCCcccc
Confidence 667899999779999 999999999643 3567888774
No 12
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.66 E-value=0.00036 Score=48.74 Aligned_cols=29 Identities=24% Similarity=0.615 Sum_probs=27.1
Q ss_pred CcchhhccccccCCcCCCCCCccccCCcc
Q 042240 107 SSKTELCRSREEVGMCRFGTKCQFAHGKE 135 (241)
Q Consensus 107 ~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ 135 (241)
-.+|.+|+.|...|.|++|.+|.|.|..+
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCC
Confidence 47999999999999999999999999875
No 13
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.64 E-value=0.00047 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=23.6
Q ss_pred hhhccccccCCcCCCCCCccccCCcc
Q 042240 110 TELCRSREEVGMCRFGTKCQFAHGKE 135 (241)
Q Consensus 110 T~LCr~f~~~G~C~yGdkC~FAHG~~ 135 (241)
+.+|++|...|.|+||++|.|+|...
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 78899997789999999999999854
No 14
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=96.39 E-value=0.00078 Score=48.73 Aligned_cols=33 Identities=21% Similarity=0.523 Sum_probs=29.3
Q ss_pred CCCcchhhccccccCCcCCCCCCccccCCcccccc
Q 042240 105 SSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139 (241)
Q Consensus 105 ~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~ 139 (241)
....++.+|+.|+ +|.|..| +|.|+|...+|+.
T Consensus 37 ~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 37 TNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQA 69 (70)
T ss_dssp TTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHHC
T ss_pred ccCCcceeccccC-cCCCCCC-CcCeeCCHHHHhc
Confidence 3568999999999 5999999 9999999998874
No 15
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.08 E-value=0.0053 Score=45.36 Aligned_cols=26 Identities=4% Similarity=-0.102 Sum_probs=20.7
Q ss_pred CCccccccccccccCCCCCC--CCcCccc
Q 042240 146 KNKSEVMTDSALVLTIQMED--HSMKASV 172 (241)
Q Consensus 146 ~yKTklCk~F~~~G~CpyG~--rf~H~~~ 172 (241)
..|++||+.| ..|.|+||. +|.|...
T Consensus 17 ~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ 44 (69)
T 2d9m_A 17 TGYFSICDRY-MNGTCPEGNSCKFAHGNA 44 (69)
T ss_dssp CSCCSBCHHH-HHSCCSSCSSCSSBSSHH
T ss_pred CCCcccCccc-CcCCCCCCCccCCcCCHH
Confidence 3467999999 789999996 4778654
No 16
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=94.92 E-value=0.005 Score=44.94 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=24.3
Q ss_pred cchhhccccccCCcCCCCCCccccCCcccc
Q 042240 108 SKTELCRSREEVGMCRFGTKCQFAHGKEEL 137 (241)
Q Consensus 108 yKT~LCr~f~~~G~C~yGdkC~FAHG~~EL 137 (241)
-++.+|++|+..|.|.+ ++|.|+|...+.
T Consensus 42 ~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 42 TKMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp TSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred ccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 36789999996699999 999999987654
No 17
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.51 E-value=0.0083 Score=46.34 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=28.5
Q ss_pred CCcchhhccccccCCcCCCCCCccccCCcccccc
Q 042240 106 SSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139 (241)
Q Consensus 106 ~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~ 139 (241)
...++.+|++|+ +|.|.+| +|.|.|...+|+.
T Consensus 52 ~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 52 SDNTVTVCMDYI-KGRCMRE-KCKYFHPPAHLQA 83 (98)
T ss_dssp TTCEEEBCHHHH-HTCCCCT-TCCSBCCCHHHHH
T ss_pred cCCccccchhhc-cCCCCCC-CcCccCChHHHHH
Confidence 468999999999 5999999 9999999988874
No 18
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=88.47 E-value=0.15 Score=35.51 Aligned_cols=26 Identities=0% Similarity=-0.096 Sum_probs=21.5
Q ss_pred CccccccccccccCCCCCCC--CcCccc
Q 042240 147 NKSEVMTDSALVLTIQMEDH--SMKASV 172 (241)
Q Consensus 147 yKTklCk~F~~~G~CpyG~r--f~H~~~ 172 (241)
.++.+|..|.+.|+||+|.. +.|..+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 58899999999999999976 456543
No 19
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=88.16 E-value=0.11 Score=45.63 Aligned_cols=23 Identities=35% Similarity=0.745 Sum_probs=20.7
Q ss_pred hhccccccCCcCCCCCCccccCCc
Q 042240 111 ELCRSREEVGMCRFGTKCQFAHGK 134 (241)
Q Consensus 111 ~LCr~f~~~G~C~yGdkC~FAHG~ 134 (241)
.+|.+|. .|.|++|++|.|.|..
T Consensus 71 ~~C~ffa-kG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 71 FFCLFFA-KGMCCLGPKCEYLHHI 93 (240)
T ss_dssp SBCHHHH-TTCCSCGGGCSSBBSC
T ss_pred eEcCccc-cCCCCCCCCCCccCCC
Confidence 4899998 5999999999999964
No 20
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=85.75 E-value=0.17 Score=37.87 Aligned_cols=31 Identities=19% Similarity=0.495 Sum_probs=26.6
Q ss_pred CcchhhccccccCCcCCCCCCccccCCcccccc
Q 042240 107 SSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139 (241)
Q Consensus 107 ~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~ 139 (241)
.-+..+|..|+ +|.|..+ .|.|.|...+|..
T Consensus 40 ~~~~~vC~dfl-kG~C~r~-~C~y~H~~~~l~~ 70 (83)
T 3d2n_A 40 NGRVIACFDSL-KGRCSRE-NCKYLHPPPHLKT 70 (83)
T ss_dssp TTEEECCHHHH-TTCCCCS-SCSSCCCCHHHHH
T ss_pred CCceeehhHhh-hccccCC-CcceeCChHHHHH
Confidence 45788999999 6999998 8999999887764
No 21
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=72.28 E-value=0.69 Score=35.10 Aligned_cols=31 Identities=19% Similarity=0.500 Sum_probs=26.3
Q ss_pred CcchhhccccccCCcCCCCCCccccCCcccccc
Q 042240 107 SSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139 (241)
Q Consensus 107 ~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~ 139 (241)
.-+...|..|+ +|.|..+ .|.|.|....|..
T Consensus 48 ~~~~~vC~dfl-kG~C~r~-~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 48 NGRVIACFDSL-KGRCSRE-NCKYLHPPTHLKT 78 (89)
T ss_dssp TTBEEBCHHHH-HTCCCCT-TCCSBCCCHHHHH
T ss_pred CCceeeehhhh-hCcCCCC-CcceecCHHHHHH
Confidence 44788999999 6999987 8999999887664
No 22
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=71.68 E-value=2.1 Score=37.86 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=34.9
Q ss_pred hhhccccccCCcCCC----CCCccccCCccccccCC--------------------CCCCCCcccccccccc----ccCC
Q 042240 110 TELCRSREEVGMCRF----GTKCQFAHGKEELRSTL--------------------FPTTKNKSEVMTDSAL----VLTI 161 (241)
Q Consensus 110 T~LCr~f~~~G~C~y----GdkC~FAHG~~ELr~~~--------------------~~p~~yKTklCk~F~~----~G~C 161 (241)
=-|||.|. .|.|+| +..|+|.|......... +.....-.++|..| . .|.|
T Consensus 89 LHLCK~~l-~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C 166 (229)
T 3u9g_A 89 LHLCKLNL-LGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTC 166 (229)
T ss_dssp BCCCHHHH-TTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSC
T ss_pred eeechhhh-cCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcC
Confidence 35899898 589943 47799999775311100 01114456889988 4 3688
Q ss_pred CCCCC
Q 042240 162 QMEDH 166 (241)
Q Consensus 162 pyG~r 166 (241)
.++..
T Consensus 167 ~~~~~ 171 (229)
T 3u9g_A 167 GQPQP 171 (229)
T ss_dssp SSSSC
T ss_pred CCCCC
Confidence 88854
No 23
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=65.01 E-value=1.3 Score=38.86 Aligned_cols=26 Identities=27% Similarity=0.699 Sum_probs=0.0
Q ss_pred CcchhhccccccCCcCCCCCCccccCCcc
Q 042240 107 SSKTELCRSREEVGMCRFGTKCQFAHGKE 135 (241)
Q Consensus 107 ~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ 135 (241)
..|..+|.+ ...|.||.+|+|-|-+.
T Consensus 189 ~~~~~~~~~---~~~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 189 EHRKQPCPY---GRKCTYGIKCRFFHPER 214 (223)
T ss_dssp -----------------------------
T ss_pred ccCCCCCCC---CcccccCCcceecCCcc
Confidence 346788996 35899999999999754
No 24
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=60.08 E-value=4.9 Score=30.89 Aligned_cols=10 Identities=30% Similarity=1.006 Sum_probs=7.6
Q ss_pred CcCCCCCCcc
Q 042240 120 GMCRFGTKCQ 129 (241)
Q Consensus 120 G~C~yGdkC~ 129 (241)
-.|+||.+|.
T Consensus 15 ~~C~yG~~CY 24 (89)
T 2kqb_A 15 TSCMYGANCY 24 (89)
T ss_dssp EECTTTTCCC
T ss_pred CCCCCCcccc
Confidence 4688888884
No 25
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=37.41 E-value=11 Score=33.33 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=20.0
Q ss_pred Ccchhhcccccc---CCcCCCCCCccccCCcc
Q 042240 107 SSKTELCRSREE---VGMCRFGTKCQFAHGKE 135 (241)
Q Consensus 107 ~yKT~LCr~f~~---~G~C~yGdkC~FAHG~~ 135 (241)
..=.++|.+|.. .|.|.++++|..-|--+
T Consensus 148 ~lLPeiC~~YkG~g~~g~C~~~~~C~kLHIC~ 179 (229)
T 3u9g_A 148 FFLPEICKSYKGEGRKQTCGQPQPCERLHICE 179 (229)
T ss_dssp GGSCCBCTTCCCSSSCCSCSSSSCCCSBCSCH
T ss_pred ccCchHHHHhCCCCCCCcCCCCCCCcceeccc
Confidence 334578888821 25888888888888743
No 26
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=28.10 E-value=18 Score=26.89 Aligned_cols=20 Identities=25% Similarity=0.811 Sum_probs=15.6
Q ss_pred hhccccccCCcCCCCCCccccCCc
Q 042240 111 ELCRSREEVGMCRFGTKCQFAHGK 134 (241)
Q Consensus 111 ~LCr~f~~~G~C~yGdkC~FAHG~ 134 (241)
++|++|. .|.. ++|.|+|-.
T Consensus 10 e~CKf~~---~Ctn-~~C~f~Hp~ 29 (80)
T 2lhn_A 10 EQCKFGT---HCTN-KRCKYRHAR 29 (80)
Confidence 6788775 6886 899999954
Done!