BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042242
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
Lanata
pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
Lanata In Complex With Nadp
Length = 364
Score = 208 bits (529), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/286 (41%), Positives = 164/286 (57%), Gaps = 23/286 (8%)
Query: 29 NVAVIFGVTGLVGKELARRL----ISTANWKVYGIARKPEITAIQSSSYCFISCDLLNPL 84
+VA+I GVTG++G LA L WKVYG+AR+ + + ++ CD+ +P
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPD 61
Query: 85 DIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQT 144
D + KL+ L DVTH+F+VTWA++ S + CE N M N L+A++P LKH+SLQT
Sbjct: 62 DSQAKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQT 119
Query: 145 GMKHYVSLQGLPEEKQVRF------YDEECPRVSKSNNFYYVLEDLLKEKLAGK--VAWS 196
G KHY+ P E + Y E+ PR+ K NFYY LED++ E++ K + WS
Sbjct: 120 GRKHYMG----PFESYGKIESHDPPYTEDLPRL-KYMNFYYDLEDIMLEEVEKKEGLTWS 174
Query: 197 VHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAE 256
VHRPG + G S S+ N +G LCVY A+CKH F G + W+ Y D SD+ L+AE
Sbjct: 175 VHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYS-DCSDADLIAE 233
Query: 257 QHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPE 302
HIW A + K +AFN NG F WK W + ++FGV+ E
Sbjct: 234 HHIWAAVD---PYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGE 276
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 27 AKNVAVIFGVTGLVGKELARRLISTANWKVYGI 59
AK V +I GV G +G L++R++ T +W+V+G+
Sbjct: 24 AKKV-LILGVNGFIGHHLSKRILETTDWEVFGM 55
>pdb|2WMD|A Chain A, Crystal Structure Of Nmra-Like Family Domain Containing
Protein 1 In Complex With Nadp And 2-(4-Chloro-
Phenylamino)-Nicotinic Acid
pdb|2WM3|A Chain A, Crystal Structure Of Nmra-Like Family Domain Containing
Protein 1 In Complex With Niflumic Acid
Length = 299
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA 67
K + V+FG TG G +AR L+ +KV + R P A
Sbjct: 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKA 44
>pdb|3E5M|A Chain A, Crystal Structure Of The Hscarg Y81a Mutant
pdb|3E5M|B Chain B, Crystal Structure Of The Hscarg Y81a Mutant
Length = 299
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA 67
K + V+FG TG G +AR L+ +KV + R P A
Sbjct: 4 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKA 43
>pdb|2EXX|A Chain A, Crystal Structure Of Hscarg From Homo Sapiens In Complex
With Nadp
pdb|2EXX|B Chain B, Crystal Structure Of Hscarg From Homo Sapiens In Complex
With Nadp
Length = 306
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA 67
K + V+FG TG G +AR L+ +KV + R P A
Sbjct: 11 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKA 50
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 31 AVIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL+ +++VYG+
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGL 44
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 31 AVIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL+ +++VYG+
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGL 44
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 31 AVIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL+ +++VYG+
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGL 44
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 31 AVIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL+ +++VYG+
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGL 44
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 31 AVIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL+ +++VYG+
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGL 31
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 31 AVIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL+ +++VYG+
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGL 44
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL+ +++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLREDHYEVYGL 346
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARK 62
+NVA+I G+TG G LA L+ ++V+GI R+
Sbjct: 24 RNVALITGITGQDGSYLAEFLLEKG-YEVHGIVRR 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,274,387
Number of Sequences: 62578
Number of extensions: 373987
Number of successful extensions: 887
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 866
Number of HSP's gapped (non-prelim): 17
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)