BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042242
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STX2|VEP1_ARATH 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Arabidopsis thaliana
GN=VEP1 PE=1 SV=1
Length = 388
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 164/279 (58%), Gaps = 14/279 (5%)
Query: 28 KNVAVIFGVTGLVGKELARRL----ISTANWKVYGIARKPEITAIQSSSYCFISCDLLNP 83
++VA+I GVTG+VG LA L WKVYG+AR+P T +I CD+ +
Sbjct: 26 ESVALIIGVTGIVGNSLAEILPLSDTPGGPWKVYGVARRPRPTWNADHPIDYIQCDVSDA 85
Query: 84 LDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILPRAKALKHVSLQ 143
D + KL+ L DVTH+F+VTW ++ + + CE N +M+ N L AI+P A L+HV LQ
Sbjct: 86 EDTRSKLSPLTDVTHVFYVTWTNRESES--ENCEANGSMLRNVLQAIIPYAPNLRHVCLQ 143
Query: 144 TGMKHYVS-LQGLPEEKQVRFYDEECPRVSKSNNFYYVLEDLLKEKLAG--KVAWSVHRP 200
TG KHY+ + + + E+ PR+ + NFYY ED+L E++ V WS+HRP
Sbjct: 144 TGTKHYLGPFTNVDGPRHDPPFTEDMPRL-QIQNFYYTQEDILFEEIKKIETVTWSIHRP 202
Query: 201 GLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQHIW 260
++ G S SL N +G LCVY A+CKH P +F G+++ WE + + SD+ L+AEQ IW
Sbjct: 203 NMIFGFSPYSLMNIVGTLCVYAAICKHEGSPLLFPGSKKAWEGF-MTASDADLIAEQQIW 261
Query: 261 VATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVK 299
A + K +AFN N F WK +W + ++FG++
Sbjct: 262 AAVD---PYAKNEAFNCNNADIFKWKHLWKILAEQFGIE 297
>sp|Q6PQJ9|5BPOR_DIGLA 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Digitalis lanata PE=1
SV=1
Length = 389
Score = 207 bits (528), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 168/298 (56%), Gaps = 27/298 (9%)
Query: 21 RGREVDAK----NVAVIFGVTGLVGKELARRL----ISTANWKVYGIARKPEITAIQSSS 72
R E DA+ +VA+I GVTG++G LA L WKVYG+AR+ + +
Sbjct: 15 RLEEDDAQPKHSSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNP 74
Query: 73 YCFISCDLLNPLDIKRKLTLLEDVTHIFWVTWASQFASDMHKCCEQNKAMMCNALNAILP 132
++ CD+ +P D + KL+ L DVTH+F+VTWA++ S + CE N M N L+A++P
Sbjct: 75 INYVQCDISDPDDSQAKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIP 132
Query: 133 RAKALKHVSLQTGMKHYVSLQGLPEEKQVRF------YDEECPRVSKSNNFYYVLEDLLK 186
LKH+SLQTG KHY+ P E + Y E+ PR+ K NFYY LED++
Sbjct: 133 NCPNLKHISLQTGRKHYMG----PFESYGKIESHDPPYTEDLPRL-KYMNFYYDLEDIML 187
Query: 187 EKLAGK--VAWSVHRPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEY 244
E++ K + WSVHRPG + G S S+ N +G LCVY A+CKH F G + W+ Y
Sbjct: 188 EEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGY 247
Query: 245 CLDGSDSRLVAEQHIWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPE 302
D SD+ L+AE HIW A + K +AFN NG F WK W + ++FGV E
Sbjct: 248 S-DCSDADLIAEHHIWAAVD---PYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVGCGE 301
>sp|O74913|YJ72_SCHPO Uncharacterized protein C757.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC757.02c PE=4 SV=1
Length = 405
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 144/285 (50%), Gaps = 23/285 (8%)
Query: 30 VAVIFGVTGLVGKELARRLISTANWK-VYGIARKPEITAIQSSSYCFISCDLLN--PLDI 86
VA++ G TGL G + +RL N K ++ I+R + + + S DLLN P DI
Sbjct: 7 VAIVTGATGLNGAAIIKRLSEDDNCKTIHCISRSLKDEYPRKIKHH--SIDLLNEEPKDI 64
Query: 87 KRKLTLLEDVTHIFWVTWAS-QFASDMHKCCEQNKAMMCNALNAI-LPRAKALKHVSLQT 144
+K +L E V I + +A+ + ++ K CE N M+ N + A+ L + L+ V L T
Sbjct: 65 AKKFSL-EGVKGINYAYFAAYKEENNEEKLCEVNGNMLRNFVQALELTSIQTLRRVILTT 123
Query: 145 GMKHYVSLQGLPEEKQVRF----YDEECPRV-SKSNNFYYVLEDLLKEKLAGKV-AWSVH 198
G+K Y G +VR D P S + NFYYV ED+LKE GK +++
Sbjct: 124 GLKFYGLHLG-----EVRLPMIETDIRVPETFSGTPNFYYVQEDILKEFSNGKKWDYTIA 178
Query: 199 RPGLLLGSSHRSLYNFLGCLCVYGAVCKHLNLPFVFGGTREIWEEYCLDGSDSRLVAEQH 258
P + G S S N + +Y VC+ L+ PF F G + + + D S S+L+A+
Sbjct: 179 MPNDICGVSKGSYMNEAFTIALYALVCRELHEPFRFPGNEKFYLGFD-DISYSKLIADFQ 237
Query: 259 IWVATNDDISSTKGQAFNAINGPRFTWKEIWPSIGKKFGVKVPEN 303
+W+ + S K FN +NG +W WP I + FGV+VP+N
Sbjct: 238 LWMTFKAECSEEK---FNIVNGDIHSWSRTWPKIAEYFGVEVPKN 279
>sp|Q8D341|ARNA_WIGBR Bifunctional polymyxin resistance protein ArnA OS=Wigglesworthia
glossinidia brevipalpis GN=arnA PE=3 SV=1
Length = 654
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 17 VSVNRGREVDAKNVA--------VIFGVTGLVGKELARRLISTANWKVYGIARKPEI--T 66
+S +G+++ KN+ +I GV G +G + L+ N+K+YGI K + +
Sbjct: 295 ISRIKGKKLIIKNIKSFKNLKKILILGVNGFIGYHITNLLLKYNNYKIYGIDIKNNLVKS 354
Query: 67 AIQSSSYCFISCDL 80
I + +CFI D+
Sbjct: 355 FIGNEKFCFIKGDI 368
>sp|P65685|Y2073_MYCBO Uncharacterized protein Mb2073c OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2073c PE=3 SV=1
Length = 854
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 33 IFGVTGLVGKELARRLISTANWKVYGIAR-KPEITAIQSSSYCFISCDLLNPLDIKRKLT 91
+ G +G++G+ L RL+S + +V GIAR +P+ SS FI+ D+ + ++ +T
Sbjct: 5 VTGASGVLGRGLTARLLSQGH-EVVGIARHRPDS---WPSSADFIAADIRDATAVESAMT 60
Query: 92 LLEDVTHIFWV 102
+ V H WV
Sbjct: 61 GADVVAHCAWV 71
>sp|P65684|Y2047_MYCTU Uncharacterized protein Rv2047c/MT2107 OS=Mycobacterium
tuberculosis GN=Rv2047c PE=3 SV=1
Length = 854
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 33 IFGVTGLVGKELARRLISTANWKVYGIAR-KPEITAIQSSSYCFISCDLLNPLDIKRKLT 91
+ G +G++G+ L RL+S + +V GIAR +P+ SS FI+ D+ + ++ +T
Sbjct: 5 VTGASGVLGRGLTARLLSQGH-EVVGIARHRPDS---WPSSADFIAADIRDATAVESAMT 60
Query: 92 LLEDVTHIFWV 102
+ V H WV
Sbjct: 61 GADVVAHCAWV 71
>sp|B5XTK9|ARNA_KLEP3 Bifunctional polymyxin resistance protein ArnA OS=Klebsiella
pneumoniae (strain 342) GN=arnA PE=3 SV=1
Length = 661
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDL 80
+I GV G +G L RL+ N+++YG+ + + ++S + F+ D+
Sbjct: 319 LILGVNGFIGNHLTERLLQDDNYEIYGLDIGSDAISRFLESPRFHFVEGDI 369
>sp|A4WAM3|ARNA_ENT38 Bifunctional polymyxin resistance protein ArnA OS=Enterobacter sp.
(strain 638) GN=arnA PE=3 SV=1
Length = 660
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGIARKPEITA--IQSSSYCFISCDL 80
+I GV G +G L RL+ N++VYG+ + + I +S + F+ D+
Sbjct: 319 LILGVNGFIGNHLTERLLQDDNFEVYGLDIGSDAISRFIGNSRFHFVEGDI 369
>sp|Q7N3Q7|ARNA_PHOLL Bifunctional polymyxin resistance protein ArnA OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=arnA PE=3
SV=1
Length = 660
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYG--IARKPEITAIQSSSYCFISCDL 80
+++ + +I GV G +G L RL+ N+ +YG I I + + FI D+
Sbjct: 311 QINHRKRVLILGVNGFIGNHLTERLLRDGNYDIYGMDIGSSAIERFISNPRFHFIEGDI 369
>sp|B4ETL7|ARNA_PROMH Bifunctional polymyxin resistance protein ArnA OS=Proteus mirabilis
(strain HI4320) GN=arnA PE=3 SV=1
Length = 660
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 24 EVDAKNVAVIFGVTGLVGKELARRLISTANWKVYGI 59
+V + +I GV G +G L RL+ N+ +YG+
Sbjct: 311 QVKRRQRVLILGVNGFIGNHLTERLLKDGNYDIYGM 346
>sp|O52325|ARNA_SALTY Bifunctional polymyxin resistance protein ArnA OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=arnA PE=2 SV=1
Length = 660
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL++ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLNEENYEVYGM 346
>sp|B4TPI2|ARNA_SALSV Bifunctional polymyxin resistance protein ArnA OS=Salmonella
schwarzengrund (strain CVM19633) GN=arnA PE=3 SV=1
Length = 660
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL++ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLNEENYEVYGM 346
>sp|Q8K2T1|NMRL1_MOUSE NmrA-like family domain-containing protein 1 OS=Mus musculus
GN=Nmral1 PE=1 SV=1
Length = 309
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 28 KNVAVIFGVTGLVGKELARRLISTANWKVYGIARKPEITA 67
+ + V+FG TG G +AR L+ +++ + R PE A
Sbjct: 4 RKLVVVFGATGAQGGSVARALLEDGTFRIRVVTRNPEQRA 43
>sp|B5R272|ARNA_SALEP Bifunctional polymyxin resistance protein ArnA OS=Salmonella
enteritidis PT4 (strain P125109) GN=arnA PE=3 SV=1
Length = 660
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL++ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLNEENYEVYGM 346
>sp|B5FNT9|ARNA_SALDC Bifunctional polymyxin resistance protein ArnA OS=Salmonella dublin
(strain CT_02021853) GN=arnA PE=3 SV=1
Length = 660
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL++ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLNEENYEVYGM 346
>sp|B5RCC4|ARNA_SALG2 Bifunctional polymyxin resistance protein ArnA OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=arnA PE=3
SV=1
Length = 660
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL++ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLNEENYEVYGM 346
>sp|B5EZH8|ARNA_SALA4 Bifunctional polymyxin resistance protein ArnA OS=Salmonella agona
(strain SL483) GN=arnA PE=3 SV=1
Length = 660
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL++ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLNEENYEVYGM 346
>sp|Q2NRV7|ARNA_SODGM Bifunctional polymyxin resistance protein ArnA OS=Sodalis
glossinidius (strain morsitans) GN=arnA PE=3 SV=1
Length = 660
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL+ N+++YG+
Sbjct: 319 LILGVNGFIGNHLTERLLRDGNYEIYGL 346
>sp|B4TBG6|ARNA_SALHS Bifunctional polymyxin resistance protein ArnA OS=Salmonella
heidelberg (strain SL476) GN=arnA PE=3 SV=1
Length = 660
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL++ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLNEENYEVYGM 346
>sp|A9N5B2|ARNA_SALPB Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=arnA PE=3
SV=1
Length = 660
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL++ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLNEENYEVYGM 346
>sp|C0Q069|ARNA_SALPC Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi C (strain RKS4594) GN=arnA PE=3 SV=1
Length = 660
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL++ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLNEENYEVYGM 346
>sp|B4SYX1|ARNA_SALNS Bifunctional polymyxin resistance protein ArnA OS=Salmonella
newport (strain SL254) GN=arnA PE=3 SV=1
Length = 660
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL++ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLNEENYEVYGM 346
>sp|P0C0R6|ARNA_SALCH Bifunctional polymyxin resistance protein ArnA OS=Salmonella
choleraesuis (strain SC-B67) GN=arnA PE=3 SV=1
Length = 660
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL++ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLNEENYEVYGM 346
>sp|Q8Z540|ARNA_SALTI Bifunctional polymyxin resistance protein ArnA OS=Salmonella typhi
GN=arnA PE=3 SV=1
Length = 660
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL+ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLDEENYEVYGM 346
>sp|B5BCP6|ARNA_SALPK Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1
Length = 660
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL+ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLDEENYEVYGM 346
>sp|Q5PNA6|ARNA_SALPA Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=arnA PE=3
SV=1
Length = 660
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL+ N++VYG+
Sbjct: 319 LILGVNGFIGNHLTERLLDEENYEVYGM 346
>sp|A6TF98|ARNA_KLEP7 Bifunctional polymyxin resistance protein ArnA OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=arnA PE=3 SV=1
Length = 661
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 32 VIFGVTGLVGKELARRLISTANWKVYGI 59
+I GV G +G L RL+ N+++YG+
Sbjct: 319 LILGVNGFIGNHLTERLLQDDNYEIYGL 346
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,441,496
Number of Sequences: 539616
Number of extensions: 4628994
Number of successful extensions: 10418
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10374
Number of HSP's gapped (non-prelim): 31
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)