Query 042243
Match_columns 303
No_of_seqs 210 out of 823
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:18:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00149 potassium transporter 100.0 2.1E-78 4.6E-83 620.6 30.2 302 1-303 474-779 (779)
2 PLN00148 potassium transporter 100.0 1.4E-77 3E-82 614.1 29.3 303 1-303 470-785 (785)
3 PLN00150 potassium ion transpo 100.0 1.7E-75 3.7E-80 598.3 29.0 287 1-303 487-779 (779)
4 PLN00151 potassium transporter 100.0 4E-75 8.6E-80 596.1 29.5 296 1-303 547-852 (852)
5 TIGR00794 kup potassium uptake 100.0 3.4E-59 7.3E-64 476.0 25.5 247 1-303 441-688 (688)
6 PRK10745 trkD potassium transp 100.0 3.6E-45 7.8E-50 368.6 21.6 205 1-303 415-622 (622)
7 COG3158 Kup K+ transporter [In 100.0 2.1E-38 4.6E-43 313.4 20.5 208 1-303 420-627 (627)
8 PF02705 K_trans: K+ potassium 100.0 4.4E-36 9.5E-41 300.2 14.5 131 1-133 404-534 (534)
9 PF05545 FixQ: Cbb3-type cytoc 61.5 8.8 0.00019 26.5 2.6 35 10-45 13-47 (49)
10 cd05900 Ig_Aggrecan Immunoglob 40.7 26 0.00056 28.4 2.7 27 110-136 76-102 (112)
11 PF12273 RCR: Chitin synthesis 39.8 34 0.00073 28.4 3.3 16 13-28 8-23 (130)
12 PF14316 DUF4381: Domain of un 38.2 36 0.00078 28.7 3.3 26 9-34 22-47 (146)
13 PF06155 DUF971: Protein of un 37.6 20 0.00043 27.6 1.5 15 272-286 25-39 (89)
14 PF02699 YajC: Preprotein tran 27.0 1.3E+02 0.0029 23.0 4.5 28 10-37 2-29 (82)
15 PF10999 DUF2839: Protein of u 25.8 44 0.00095 25.2 1.5 21 3-23 37-59 (68)
16 smart00410 IG_like Immunoglobu 24.8 91 0.002 21.4 3.1 25 110-134 53-77 (86)
17 smart00409 IG Immunoglobulin. 24.8 91 0.002 21.4 3.1 25 110-134 53-77 (86)
18 PRK05585 yajC preprotein trans 24.6 1.1E+02 0.0024 24.8 3.8 20 8-27 16-35 (106)
19 PF14612 Ino80_Iec3: IEC3 subu 22.8 39 0.00085 31.3 0.9 9 272-280 215-223 (232)
20 PF12273 RCR: Chitin synthesis 21.8 96 0.0021 25.6 3.0 27 10-36 2-28 (130)
21 PF04995 CcmD: Heme exporter p 21.6 2.3E+02 0.0051 19.2 4.4 28 10-37 8-35 (46)
22 smart00408 IGc2 Immunoglobulin 21.1 1.3E+02 0.0028 19.3 3.1 24 107-130 38-61 (63)
23 COG2179 Predicted hydrolase of 20.0 21 0.00045 31.7 -1.4 60 238-299 55-118 (175)
24 COG4736 CcoQ Cbb3-type cytochr 20.0 1.1E+02 0.0024 22.5 2.6 37 9-46 12-50 (60)
No 1
>PLN00149 potassium transporter; Provisional
Probab=100.00 E-value=2.1e-78 Score=620.58 Aligned_cols=302 Identities=77% Similarity=1.258 Sum_probs=245.9
Q ss_pred CeecccCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCChHHHHhcCCCCCCcceeeEEEEeecCCCChhHHHHHH
Q 042243 1 SLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHF 80 (303)
Q Consensus 1 ~l~K~~~GGW~pL~ia~vl~~iM~tW~~G~~~~~~~~~~~~v~l~~~l~~~~~~~~~rVPG~avf~t~~~~~iP~~~~h~ 80 (303)
++.||+||||+||++|++++++|++||||++++++++.++++|+++|..+.++.++.||||+|||||+..+++|++|.||
T Consensus 474 ~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf~t~~~~gvP~~f~h~ 553 (779)
T PLN00149 474 SLIKFLEGAWVPIALSFIFLLVMYVWHYGTLKRYEFDVQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHF 553 (779)
T ss_pred HHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhccCCCCcccCcEEEEEcCCCCCCCHHHHHH
Confidence 47899999999999999999999999999999999999999999999888888888899999999999999999999999
Q ss_pred hhcCCccceEEEEEEeeeecccccCCCccEEEEEecCCCCCEEEEEEEeeeeeccCCchHHHHHHHHHHHHHHHhcCCCC
Q 042243 81 VTNLPAFHQVVVFLCIKSVPVPHVRPDERFLVGRVGPKEYRLYRCIARYGYRDIHKDDLEFEKDLVCSIAEFIRSEKPQC 160 (303)
Q Consensus 81 l~~~~~lhe~~vfv~v~~~~vP~V~~~eR~~v~~l~~~~~~iyr~v~ryGy~d~~~~~~~f~~~li~~L~~fI~~e~~~~ 160 (303)
++|+|++||++||+||+++|+|+||++|||++++++++++++|||++||||||.+++++||+++|+++|++||++|+.+.
T Consensus 554 ~~~~~~lhe~~Vfv~ik~~~vP~V~~~eR~~v~~i~~~~~~~~r~vvryGy~d~~~d~~dFE~~Lve~L~~FI~~e~~~~ 633 (779)
T PLN00149 554 VTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGRIGPKEYRLYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSEKPEP 633 (779)
T ss_pred HHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEEEEEEEEeeccccccchHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999998888999999999999998889999999999999999987432
Q ss_pred CCCCc-ccccCCcceeeeccCCCCCCccccC-CCCCcc--cccCccccccccCccccccceeeecCCCCCCCcchHHHHH
Q 042243 161 SLGIE-DVECDGKMTVVGTTSSNLDGIRMCE-DDGDFS--QMAGTSELKELKNPEKLRKRVRFVVPESPQIDTDTREELQ 236 (303)
Q Consensus 161 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~ 236 (303)
....+ .++.+++++++...+....+....+ ..+... ...+.+. .........+++++|..+++...++++++||+
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~eEl~ 712 (779)
T PLN00149 634 NGAPENEEGEDERMTVVGTCSTHLEGIQLREDDSDKQEPAGTSELRE-IRSPPVSRPKKRVRFVVPESPKIDRGAREELQ 712 (779)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-ccCccccCcccceeeccccccccchhHHHHHH
Confidence 11011 1011344454433221111000000 000000 0000000 00001112235778876655556688999999
Q ss_pred HHHHHHHcCcEEEeeeeEEEecCCCChHHHHHHHHHHHHHHhhcCCCCcccccCCCCeEeeecEEEC
Q 042243 237 ELMDAREAGMAFILGHCYVRAKSGSSLMKRLVINLGYDFLRRNSRGPTYALGIPCASTLEVGMIYLV 303 (303)
Q Consensus 237 ~l~~A~~~gvvYilG~~~v~a~~~S~~~kr~~in~~Y~fLR~N~R~~~~~L~IP~~~lleVGmvy~v 303 (303)
+|++|+|+||+||+||++|+||++|||+||++|||+|+|||||||+|.++|+|||++||||||+|||
T Consensus 713 ~L~~A~eaGVvYIlG~s~v~Ar~~Ss~~KK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LleVGmvY~v 779 (779)
T PLN00149 713 ELMEAREAGMAYILGHSYVRAKQGSSMMKKLVINYGYDFLRRNSRGPRYALSVPHASTLEVGMVYHV 779 (779)
T ss_pred HHHHHHHcCcEEEecCceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEeceEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 2
>PLN00148 potassium transporter; Provisional
Probab=100.00 E-value=1.4e-77 Score=614.06 Aligned_cols=303 Identities=55% Similarity=0.999 Sum_probs=245.1
Q ss_pred CeecccCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCChHHHHhcCCCCCCcceeeEEEEeecCCCChhHHHHHH
Q 042243 1 SLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHF 80 (303)
Q Consensus 1 ~l~K~~~GGW~pL~ia~vl~~iM~tW~~G~~~~~~~~~~~~v~l~~~l~~~~~~~~~rVPG~avf~t~~~~~iP~~~~h~ 80 (303)
++.||+|||||||++|++++++|++||||++++++++.++++++++|.++.++.++.||||+|||||+..+++|++|.||
T Consensus 470 ~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~RVpG~~vf~t~~~~gvP~~f~h~ 549 (785)
T PLN00148 470 ALMKVPQGGWVPLVLSAIFMSIMYIWHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHF 549 (785)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecCCCCCCCHHHHHH
Confidence 47899999999999999999999999999999999999999999999888888778899999999999999999999999
Q ss_pred hhcCCccceEEEEEEeeeecccccCCCccEEEEEecCCCCCEEEEEEEeeeeeccCCchHHHHHHHHHHHHHHHhcCCCC
Q 042243 81 VTNLPAFHQVVVFLCIKSVPVPHVRPDERFLVGRVGPKEYRLYRCIARYGYRDIHKDDLEFEKDLVCSIAEFIRSEKPQC 160 (303)
Q Consensus 81 l~~~~~lhe~~vfv~v~~~~vP~V~~~eR~~v~~l~~~~~~iyr~v~ryGy~d~~~~~~~f~~~li~~L~~fI~~e~~~~ 160 (303)
++|||++||++|||||+++|+|+||++|||+++++++++|++|||++||||||.+++++||+++|+++|++||++|+...
T Consensus 550 ~~~~~~lHe~~Vfv~ik~~~vP~V~~~eR~~v~~i~~~~yr~~r~vvryGy~d~~~~~~dFe~~Lv~~L~~FIr~e~~~~ 629 (785)
T PLN00148 550 VTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDIQRDDGDFENMLVQSIAEFIQMEAEEP 629 (785)
T ss_pred HHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEEEEEEEEccCcccccchHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999998888999999999999998889999999999999999988532
Q ss_pred CCC-CcccccCCcceeeeccCCCCCCccc--cC----CCCCccccc-----CccccccccCc-cccccceeeecCCCCCC
Q 042243 161 SLG-IEDVECDGKMTVVGTTSSNLDGIRM--CE----DDGDFSQMA-----GTSELKELKNP-EKLRKRVRFVVPESPQI 227 (303)
Q Consensus 161 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 227 (303)
... .+.++.++++++.....+...+..+ ++ ..+....+. +.++..+.+++ ...+++++|..++....
T Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (785)
T PLN00148 630 QSSASESSSNDGRMAVISTRDVQSSSLLMVSEQELADIDDSIQSSKSLTLQSLQSAYEDENPGQSRRRRVRFQLPENPGM 709 (785)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecccccccc
Confidence 100 0010113334443322210000000 00 000000000 00001111111 23456777776544445
Q ss_pred CcchHHHHHHHHHHHHcCcEEEeeeeEEEecCCCChHHHHHHHHHHHHHHhhcCCCCcccccCCCCeEeeecEEEC
Q 042243 228 DTDTREELQELMDAREAGMAFILGHCYVRAKSGSSLMKRLVINLGYDFLRRNSRGPTYALGIPCASTLEVGMIYLV 303 (303)
Q Consensus 228 ~~~~~~El~~l~~A~~~gvvYilG~~~v~a~~~S~~~kr~~in~~Y~fLR~N~R~~~~~L~IP~~~lleVGmvy~v 303 (303)
++++++||++|++|+|+||+||+||++|+||++|||+||++||++|+|||||||+|.++|+|||++||||||+|+|
T Consensus 710 ~~~~~~El~~L~~A~eaGVvYIlG~s~v~Ar~~Ss~~KKivIn~~Y~FLRkNcR~~~~~L~IPh~~LleVGM~Y~V 785 (785)
T PLN00148 710 DPSVREELMDLIEAKEAGVAYIMGHSYVKARRSSSFLKKLAIDIGYSFLRKNCRGPAVALNIPHISLIEVGMIYYV 785 (785)
T ss_pred cchHHHHHHHHHHHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEcceEEEC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>PLN00150 potassium ion transporter family protein; Provisional
Probab=100.00 E-value=1.7e-75 Score=598.33 Aligned_cols=287 Identities=42% Similarity=0.766 Sum_probs=233.0
Q ss_pred CeecccCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCChHHHHhcCCCCCCcceeeEEEEeecCCCChhHHHHHH
Q 042243 1 SLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHF 80 (303)
Q Consensus 1 ~l~K~~~GGW~pL~ia~vl~~iM~tW~~G~~~~~~~~~~~~v~l~~~l~~~~~~~~~rVPG~avf~t~~~~~iP~~~~h~ 80 (303)
++.||+||||+||++|++++++|++||||++++++++.++++|+++|.++..+.++.||||+|||||+..+++|++|.||
T Consensus 487 ~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf~t~~~~gvP~~f~h~ 566 (779)
T PLN00150 487 VLFKVTQGGWVPLVIAAVFGTVMYTWHYGTRKRYLYEMQHKVSVGWLLGLGPSLGLVRVPGIGLMYTDLAHGVPPLFSHF 566 (779)
T ss_pred HHhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHhhcccCCCcccCcEEEEEeCCCCCCCHHHHHH
Confidence 47899999999999999999999999999999999999999999999888877778899999999999999999999999
Q ss_pred hhcCCccceEEEEEEeeeecccccCCCccEEEEEecCCCCCEEEEEEEeeeeeccCCchHHHHHHHHHHHHHHHhcCCCC
Q 042243 81 VTNLPAFHQVVVFLCIKSVPVPHVRPDERFLVGRVGPKEYRLYRCIARYGYRDIHKDDLEFEKDLVCSIAEFIRSEKPQC 160 (303)
Q Consensus 81 l~~~~~lhe~~vfv~v~~~~vP~V~~~eR~~v~~l~~~~~~iyr~v~ryGy~d~~~~~~~f~~~li~~L~~fI~~e~~~~ 160 (303)
++|||++||++||+||+++|+|+||++|||+++++++++|++|||++||||||.+++++||+++|+++|++||++|+.+.
T Consensus 567 v~~~~~lhe~~Vfl~i~~~~vP~V~~~eR~~v~~i~~~~~r~~r~vvryGy~d~~~d~~dFE~~LvesL~~FIr~e~~~~ 646 (779)
T PLN00150 567 ITNLPAIHSTVVFVCIKYLPVNTVPQDERFLIRRIGPRAYSMYRCAARYGYTDLEKKDDNFEQLLIASLERFIEIESFRE 646 (779)
T ss_pred HHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEEEEEEEEccCcCcccchHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999998888999999999999998889999999999999999987431
Q ss_pred CCCCcccccCCcceeeeccCCC-CCCccccCCCCCcccc-----cCccccccccCccccccceeeecCCCCCCCcchHHH
Q 042243 161 SLGIEDVECDGKMTVVGTTSSN-LDGIRMCEDDGDFSQM-----AGTSELKELKNPEKLRKRVRFVVPESPQIDTDTREE 234 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 234 (303)
...+ +.+++.....+. .. . ++........ ...+...+.+.+ ..++.++ .+.++++++|
T Consensus 647 ~~~~------~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~v~eE 710 (779)
T PLN00150 647 QSDL------ESMAASWTPEELMGE-G--NSVGSGLFTQYDQSDINFATSQEWKRP--SSQEDSV-----SGHSSDTQDE 710 (779)
T ss_pred cccc------ccccccccccccccc-C--Ccccccccccccccccccccccccccc--ccccccc-----ccccccHHHH
Confidence 1100 011111100000 00 0 0000000000 000000001110 0112222 1224688999
Q ss_pred HHHHHHHHHcCcEEEeeeeEEEecCCCChHHHHHHHHHHHHHHhhcCCCCcccccCCCCeEeeecEEEC
Q 042243 235 LQELMDAREAGMAFILGHCYVRAKSGSSLMKRLVINLGYDFLRRNSRGPTYALGIPCASTLEVGMIYLV 303 (303)
Q Consensus 235 l~~l~~A~~~gvvYilG~~~v~a~~~S~~~kr~~in~~Y~fLR~N~R~~~~~L~IP~~~lleVGmvy~v 303 (303)
|++|++|+|+||+||+||++|+||++|||+||++||++|+|||||||+|.++|+|||++||||||+|||
T Consensus 711 l~~L~~A~eaGVvYIlG~~~v~Ak~~Ss~~KK~vIN~~Y~FLRkNcR~~~~~L~IPh~~LleVGmvY~V 779 (779)
T PLN00150 711 VAFLNKCKEAGVVYILGNNDVKARKDSGFFKKVIINYIYTFLRRISRDSEVVLNIPHECLLKVGMVYYV 779 (779)
T ss_pred HHHHHHHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCCccccCCChHHeEEeceEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997
No 4
>PLN00151 potassium transporter; Provisional
Probab=100.00 E-value=4e-75 Score=596.07 Aligned_cols=296 Identities=39% Similarity=0.675 Sum_probs=234.3
Q ss_pred CeecccCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCChHHHHhcCCCCCCcceeeEEEEeecCCCChhHHHHHH
Q 042243 1 SLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHF 80 (303)
Q Consensus 1 ~l~K~~~GGW~pL~ia~vl~~iM~tW~~G~~~~~~~~~~~~v~l~~~l~~~~~~~~~rVPG~avf~t~~~~~iP~~~~h~ 80 (303)
++.||+|||||||++|++++++|++||||++++++++.++++++++|.++.++.++.||||+|||||++.+++|++|.||
T Consensus 547 ~l~Ki~~GGW~Pl~la~v~~~iM~~W~yG~~~~~~~~~~~~vs~~~~~~L~~~~~~~RVpGiglf~t~~~~gvP~~f~h~ 626 (852)
T PLN00151 547 VLSSVGDGGWIPLVFASVFLCIMYIWNYGSKLKYQSEVRQKLSMDLMRELGSNLGTIRAPGIGLLYNELVKGIPAIFGHF 626 (852)
T ss_pred HHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecCCCCCCCHHHHHH
Confidence 47899999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred hhcCCccceEEEEEEeeeecccccCCCccEEEEEecCCCCCEEEEEEEeeeeeccC-CchHHHHHHHHHHHHHHHhcCCC
Q 042243 81 VTNLPAFHQVVVFLCIKSVPVPHVRPDERFLVGRVGPKEYRLYRCIARYGYRDIHK-DDLEFEKDLVCSIAEFIRSEKPQ 159 (303)
Q Consensus 81 l~~~~~lhe~~vfv~v~~~~vP~V~~~eR~~v~~l~~~~~~iyr~v~ryGy~d~~~-~~~~f~~~li~~L~~fI~~e~~~ 159 (303)
++|+|++||++|||||+++|+|+||++|||++++++++++|+|||++||||||.++ ++++|+++|+++|++||++|+..
T Consensus 627 i~~~~alHe~~Vfv~ik~~~vP~V~~~eR~lv~ri~~~~~~~yr~vvrYGY~D~~~~~~~dFe~~Lv~~l~~fi~~e~~~ 706 (852)
T PLN00151 627 LTTLPAIHSTIIFVCIKYVPVPVVPQEERFLFRRVCPKDYHMFRCIARYGYKDVRKENHQAFEQLLIESLEKFIRREAQE 706 (852)
T ss_pred HHhCCcccceEEEEEEEECcccccChhheEEEEEcCCCCCCEEEEEEEEeecccccccchHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999986 67899999999999999998753
Q ss_pred CCCCC--cccccCC---cceeeeccCCCCCCc-cccCCCCCcccccCcccc--c-cccCccccccceeeecCCCCCCCcc
Q 042243 160 CSLGI--EDVECDG---KMTVVGTTSSNLDGI-RMCEDDGDFSQMAGTSEL--K-ELKNPEKLRKRVRFVVPESPQIDTD 230 (303)
Q Consensus 160 ~~~~~--~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (303)
....+ +.+.+++ +++.....+...... ..+........+...+.. + +.++. ..+++++ .+.+++
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~ 779 (852)
T PLN00151 707 RALESDGNDDTDDEDSVTSSRVLIAPNGSVYSLGVPLLADYRLTSKPIPEASTSEEVSPV--LPSSSMS-----SDEDQS 779 (852)
T ss_pred ccccccccccccccccccccccccCCCccccccccccccccccccccccccccccccccc--ccccccc-----cccCcc
Confidence 21000 0000010 112211111000000 000000000000000000 0 00000 0112222 223478
Q ss_pred hHHHHHHHHHHHHcCcEEEeeeeEEEecCCCChHHHHHHHHHHHHHHhhcCCCCcccccCCCCeEeeecEEEC
Q 042243 231 TREELQELMDAREAGMAFILGHCYVRAKSGSSLMKRLVINLGYDFLRRNSRGPTYALGIPCASTLEVGMIYLV 303 (303)
Q Consensus 231 ~~~El~~l~~A~~~gvvYilG~~~v~a~~~S~~~kr~~in~~Y~fLR~N~R~~~~~L~IP~~~lleVGmvy~v 303 (303)
+++||++|++|+|+||+||+||++|+||++|+|+||++|||+|+|||||||++.++|+|||++||||||+|+|
T Consensus 780 ~~~El~~l~~a~e~Gv~yilG~~~v~a~~~S~~~Kk~~in~~Y~fLRkN~R~~~~~L~iP~~~lleVGm~Y~v 852 (852)
T PLN00151 780 LEYELSFIREAKESGVVYLLGHGDVRARKNSWFIKKLVINYFYAFLRKNCRRGIANLSVPHSNIMQVGMTYMV 852 (852)
T ss_pred HHHHHHHHHHHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEeceEEEC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=100.00 E-value=3.4e-59 Score=476.01 Aligned_cols=247 Identities=34% Similarity=0.638 Sum_probs=220.1
Q ss_pred CeecccCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCChHHHHhcCCCCC-CcceeeEEEEeecCCCChhHHHHH
Q 042243 1 SLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLG-IVRVRGIGLIHTELVSGIPAIFSH 79 (303)
Q Consensus 1 ~l~K~~~GGW~pL~ia~vl~~iM~tW~~G~~~~~~~~~~~~v~l~~~l~~~~~~~-~~rVPG~avf~t~~~~~iP~~~~h 79 (303)
++.||+|||||||++|++++++|++|+||++++++++.++++|+++|++.+.... +.|+||+|+|||+..+++|++|.|
T Consensus 441 nl~Ki~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~l~rvpG~avf~t~~~~~vP~~~~h 520 (688)
T TIGR00794 441 NLDKVPEGGWFPLSLSGIFMSVMTTWRYGRFRKLRRDHEHRVSISALIASLQPKPGLVRVPGIGIYYSNLVNGIPAVFGH 520 (688)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCcccCCeEEEeeCCccCCCHHHHH
Confidence 4789999999999999999999999999999999999999999999998665433 479999999999999999999999
Q ss_pred HhhcCCccceEEEEEEeeeecccccCCCccEEEEEecCCCCCEEEEEEEeeeeeccCCchHHHHHHHHHHHHHHHhcCCC
Q 042243 80 FVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLVGRVGPKEYRLYRCIARYGYRDIHKDDLEFEKDLVCSIAEFIRSEKPQ 159 (303)
Q Consensus 80 ~l~~~~~lhe~~vfv~v~~~~vP~V~~~eR~~v~~l~~~~~~iyr~v~ryGy~d~~~~~~~f~~~li~~L~~fI~~e~~~ 159 (303)
+++|||++||++||+||+++|+|+||++|||+++++++++ |+|||++||||||+++.+++|+++++++|.+||+++...
T Consensus 521 ~l~~~~~lhe~~vfltv~~~~~P~Vp~~eR~~v~~l~~~~-g~~rv~~~yGf~e~~~~~~~l~~~ii~~L~~fi~~~~~~ 599 (688)
T TIGR00794 521 LVTKFPSIHEVFIFLSLRTLDAPTVHNEERVQISQVGPTE-GMYRCVIRYGFMDTPNEPKELAAHIVNSIVEFVEHECGF 599 (688)
T ss_pred HHHhCCccceEEEEEEEEECCCCcCCcceEEEEEEEcCCC-CEEEEEEEecCCcCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999754 899999999999999998899999999999999876421
Q ss_pred CCCCCcccccCCcceeeeccCCCCCCccccCCCCCcccccCccccccccCccccccceeeecCCCCCCCcchHHHHHHHH
Q 042243 160 CSLGIEDVECDGKMTVVGTTSSNLDGIRMCEDDGDFSQMAGTSELKELKNPEKLRKRVRFVVPESPQIDTDTREELQELM 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~~l~ 239 (303)
+. . + + ++.. .. ++ +...++|++.++
T Consensus 600 -----~~-~--~-------------------~-~~~~------------~~-------~~--------~~~~eee~~~~~ 624 (688)
T TIGR00794 600 -----NL-N--N-------------------L-EELS------------DK-------RC--------RMPIEEIFENAM 624 (688)
T ss_pred -----cc-c--c-------------------c-cccc------------cc-------cc--------ccchHHHHHHHH
Confidence 00 0 0 0 0000 00 00 012578999999
Q ss_pred HHHHcCcEEEeeeeEEEecCCCChHHHHHHHHHHHHHHhhcCCCCcccccCCCCeEeeecEEEC
Q 042243 240 DAREAGMAFILGHCYVRAKSGSSLMKRLVINLGYDFLRRNSRGPTYALGIPCASTLEVGMIYLV 303 (303)
Q Consensus 240 ~A~~~gvvYilG~~~v~a~~~S~~~kr~~in~~Y~fLR~N~R~~~~~L~IP~~~lleVGmvy~v 303 (303)
+|.++||+|++||+.++++++|+++||+.||++|.||++|||++...|+||+++++||||.|+|
T Consensus 625 ~~~~~gv~yflg~~~~~~~~~~~~~~~~~I~~lf~~l~rn~~~~~~~~~iP~~rvvevG~~~~i 688 (688)
T TIGR00794 625 ETKEHGYSYFMGEESLILKKRSPILRKIRVNHVFLFIRRNARRAPKVLEIPPDRLLEVGTVVEI 688 (688)
T ss_pred HHhhcCCEEEeeceEEEECCCccHHHHHHHHHHHHHHHHhccChhhheeCChhhEEEEeeEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 6
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=100.00 E-value=3.6e-45 Score=368.59 Aligned_cols=205 Identities=20% Similarity=0.353 Sum_probs=181.4
Q ss_pred CeecccCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCChHHHHhcCCCCCCcceeeEEEEeecCCCChhHHHHHH
Q 042243 1 SLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHF 80 (303)
Q Consensus 1 ~l~K~~~GGW~pL~ia~vl~~iM~tW~~G~~~~~~~~~~~~v~l~~~l~~~~~~~~~rVPG~avf~t~~~~~iP~~~~h~ 80 (303)
++.||+|||||||++|++++++|+||++|++++++++.++++++++|++.+...++.||||+|||||+..+++|++|.|+
T Consensus 415 nl~Ki~~GGW~pl~ia~v~~~iM~tW~~G~~~~~~~~~~~~~~l~~f~~~l~~~~~~rvpG~avflt~~~~~vP~~l~h~ 494 (622)
T PRK10745 415 NLDKLLSGGWLPLSLGLVMFIVMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRAINVIPFALLHN 494 (622)
T ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCHHHHHHHhhhcCCCccCeEEEEEeCCCCCCCHHHHHH
Confidence 47899999999999999999999999999999999999999999999999987777799999999999999999999999
Q ss_pred hhcCCccceEEEEEEeeeecccccCCCccEEEEEecCCCCCEEEEEEEeeeeeccCCchHHHHHHHHHHHHHHHhcCCCC
Q 042243 81 VTNLPAFHQVVVFLCIKSVPVPHVRPDERFLVGRVGPKEYRLYRCIARYGYRDIHKDDLEFEKDLVCSIAEFIRSEKPQC 160 (303)
Q Consensus 81 l~~~~~lhe~~vfv~v~~~~vP~V~~~eR~~v~~l~~~~~~iyr~v~ryGy~d~~~~~~~f~~~li~~L~~fI~~e~~~~ 160 (303)
++||+++||++||+||+++|+|||+++||++++++++ |+|||++||||||+++.+..+.. . +.+..
T Consensus 495 lk~~~~lhe~~v~l~v~~~~~P~V~~~eR~~v~~l~~---g~~rv~~~yGf~e~~~i~~~L~~-~--------~~~g~-- 560 (622)
T PRK10745 495 LKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSP---TFWRVVASYGWRETPNVEEVFHR-C--------GLEGL-- 560 (622)
T ss_pred hhcCCccceEEEEEEEEECCCcccCcccEEEEEEECC---CEEEEEEEecCCCCCCHHHHHHH-H--------HhCCC--
Confidence 9999999999999999999999999999999999997 89999999999999887433311 1 00000
Q ss_pred CCCCcccccCCcceeeeccCCCCCCccccCCCCCcccccCccccccccCccccccceeeecCCCCCCCcchHHHHHHHHH
Q 042243 161 SLGIEDVECDGKMTVVGTTSSNLDGIRMCEDDGDFSQMAGTSELKELKNPEKLRKRVRFVVPESPQIDTDTREELQELMD 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~~l~~ 240 (303)
.++
T Consensus 561 ---------------------------------------------------------~~~-------------------- 563 (622)
T PRK10745 561 ---------------------------------------------------------SCR-------------------- 563 (622)
T ss_pred ---------------------------------------------------------CCC--------------------
Confidence 000
Q ss_pred HHHcCcEEEeeeeEEEecCCCC---hHHHHHHHHHHHHHHhhcCCCCcccccCCCCeEeeecEEEC
Q 042243 241 AREAGMAFILGHCYVRAKSGSS---LMKRLVINLGYDFLRRNSRGPTYALGIPCASTLEVGMIYLV 303 (303)
Q Consensus 241 A~~~gvvYilG~~~v~a~~~S~---~~kr~~in~~Y~fLR~N~R~~~~~L~IP~~~lleVGmvy~v 303 (303)
-..++|.+||+.+...++++ |-|| +|.||.+|+++....++||++|++|+|+.+++
T Consensus 564 --~~~~s~fl~r~~l~~~~~~~m~~wr~~-----lF~~m~rna~~~~~~f~lP~~rvvelG~~v~i 622 (622)
T PRK10745 564 --MMETSFFMSHESLILGKRPWYLRLRGK-----LFLLLQRNALRAPDQFEIPPNRVIELGTQVEI 622 (622)
T ss_pred --ccceEEEEeeEEEEeCCCCCcHHHHHH-----HHHHHHHcCCCHHHHhCCCcccEEEEeeEEeC
Confidence 01679999999999888887 4444 79999999999999999999999999999886
No 7
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-38 Score=313.44 Aligned_cols=208 Identities=21% Similarity=0.368 Sum_probs=184.1
Q ss_pred CeecccCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCChHHHHhcCCCCCCcceeeEEEEeecCCCChhHHHHHH
Q 042243 1 SLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHF 80 (303)
Q Consensus 1 ~l~K~~~GGW~pL~ia~vl~~iM~tW~~G~~~~~~~~~~~~v~l~~~l~~~~~~~~~rVPG~avf~t~~~~~iP~~~~h~ 80 (303)
++.||+||||+|+++|++++++|+||++|+++++++..++.+|++.|++.+.+..+.||||||||+|...+.+|.++.|+
T Consensus 420 N~~Ki~~GGw~pllia~~i~~vM~tW~~g~~~l~~~~~~~~i~l~~fi~~l~~~~p~~v~gTAVfLt~~~~~vP~aLlhn 499 (627)
T COG3158 420 NLLKIHDGGWLPLLLAAVIFFVMWTWKRGRQILFEKTRENGIPLDAFIASLEKHPPVRVPGTAVFLTRDPDVVPRALLHN 499 (627)
T ss_pred hhhhhccCCChHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCCHHHHHHHHhhCCCcccCceEEEEcCCCCcCcHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccceEEEEEEeeeecccccCCCccEEEEEecCCCCCEEEEEEEeeeeeccCCchHHHHHHHHHHHHHHHhcCCCC
Q 042243 81 VTNLPAFHQVVVFLCIKSVPVPHVRPDERFLVGRVGPKEYRLYRCIARYGYRDIHKDDLEFEKDLVCSIAEFIRSEKPQC 160 (303)
Q Consensus 81 l~~~~~lhe~~vfv~v~~~~vP~V~~~eR~~v~~l~~~~~~iyr~v~ryGy~d~~~~~~~f~~~li~~L~~fI~~e~~~~ 160 (303)
++||+++||++||++|++.++|||++++|++++++++ +++|++++|||||+++++. ..+.+ +.+.
T Consensus 500 lkhnkvlhe~nv~ltv~t~~~P~v~~~~r~~ve~l~~---~f~rV~l~~Gfme~pnvp~-~l~~~--------~~~G--- 564 (627)
T COG3158 500 LKHNKVLHERNVFLTVRTEDVPYVHPTDRVKVEQLSD---DFVRVVLHFGFMETPNVPR-ALRLC--------RKKG--- 564 (627)
T ss_pred hhhhheeeeeEEEEEEEecCCCCCCccceeeeeeccC---ceEEEEEEeeccCCCCHHH-HHHHH--------hhcC---
Confidence 9999999999999999999999999999999999998 7999999999999999843 22211 1000
Q ss_pred CCCCcccccCCcceeeeccCCCCCCccccCCCCCcccccCccccccccCccccccceeeecCCCCCCCcchHHHHHHHHH
Q 042243 161 SLGIEDVECDGKMTVVGTTSSNLDGIRMCEDDGDFSQMAGTSELKELKNPEKLRKRVRFVVPESPQIDTDTREELQELMD 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~~l~~ 240 (303)
.+|++.
T Consensus 565 --------------------------------------------------------~~f~im------------------ 570 (627)
T COG3158 565 --------------------------------------------------------LKFDIM------------------ 570 (627)
T ss_pred --------------------------------------------------------ceeccc------------------
Confidence 011110
Q ss_pred HHHcCcEEEeeeeEEEecCCCChHHHHHHHHHHHHHHhhcCCCCcccccCCCCeEeeecEEEC
Q 042243 241 AREAGMAFILGHCYVRAKSGSSLMKRLVINLGYDFLRRNSRGPTYALGIPCASTLEVGMIYLV 303 (303)
Q Consensus 241 A~~~gvvYilG~~~v~a~~~S~~~kr~~in~~Y~fLR~N~R~~~~~L~IP~~~lleVGmvy~v 303 (303)
...|.+|++.+++++.+++.+. . +-.|.+|.||.-++...++||.++++|+|---+|
T Consensus 571 ----~tsFfl~re~l~~~~~~g~~~w-~-~~lfi~l~r~aa~~~~~F~lp~~rvvElGtqveI 627 (627)
T COG3158 571 ----ETSFFLSRESLIASKNSGMPRW-R-DRLFIALARNAASPTDYFKLPPNRVVELGTQVEI 627 (627)
T ss_pred ----ceEEEEEeeeeecCCCCCchHH-H-HHHHHHHHHhcCCHHHhhCCCCCcEEEeeeeeeC
Confidence 3579999999999999998776 2 3479999999999999999999999999965543
No 8
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=100.00 E-value=4.4e-36 Score=300.23 Aligned_cols=131 Identities=36% Similarity=0.724 Sum_probs=127.8
Q ss_pred CeecccCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCChHHHHhcCCCCCCcceeeEEEEeecCCCChhHHHHHH
Q 042243 1 SLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHF 80 (303)
Q Consensus 1 ~l~K~~~GGW~pL~ia~vl~~iM~tW~~G~~~~~~~~~~~~v~l~~~l~~~~~~~~~rVPG~avf~t~~~~~iP~~~~h~ 80 (303)
++.||+|||||||++|++++++|+||++||+++++++.++++++++|+++.++.++.|+||+|||||+..+++|+++.|+
T Consensus 404 nl~K~~~GGW~pl~ia~~l~~iM~tW~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~aVFlt~~~~~vP~~l~h~ 483 (534)
T PF02705_consen 404 NLLKFPHGGWFPLLIAAVLFTIMYTWRRGRKLLYEFERENKLPLDDFLELLEDQSIPRVPGTAVFLTRSPDGVPPALLHN 483 (534)
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhhhCCCceecceEEEEcCCCccCcHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccceEEEEEEeeeecccccCCCccEEEEEecCCCCCEEEEEEEeeeee
Q 042243 81 VTNLPAFHQVVVFLCIKSVPVPHVRPDERFLVGRVGPKEYRLYRCIARYGYRD 133 (303)
Q Consensus 81 l~~~~~lhe~~vfv~v~~~~vP~V~~~eR~~v~~l~~~~~~iyr~v~ryGy~d 133 (303)
++||+++||+++|+||+++|+|+||++|||++++++++ |+|||++||||||
T Consensus 484 l~~~~vlhe~~v~l~v~~~~vP~V~~~~R~~v~~l~~~--g~~rv~~ryGf~e 534 (534)
T PF02705_consen 484 LKHNKVLHERVVFLTVKTEPVPRVPPEERYEVERLGPD--GFYRVTLRYGFME 534 (534)
T ss_pred HHhCCcccceEEEEEEEEeccCCCCCceEEEEEEecCC--CEEEEEEEecCCC
Confidence 99999999999999999999999999999999999963 9999999999998
No 9
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=61.46 E-value=8.8 Score=26.53 Aligned_cols=35 Identities=17% Similarity=0.589 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCChH
Q 042243 10 WVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSIN 45 (303)
Q Consensus 10 W~pL~ia~vl~~iM~tW~~G~~~~~~~~~~~~v~l~ 45 (303)
|+++++ +++|+....|.|-++.+.+++....+|++
T Consensus 13 ~~~v~~-~~~F~gi~~w~~~~~~k~~~e~aa~lpl~ 47 (49)
T PF05545_consen 13 IGTVLF-FVFFIGIVIWAYRPRNKKRFEEAANLPLD 47 (49)
T ss_pred HHHHHH-HHHHHHHHHHHHcccchhhHHHHHccCcc
Confidence 333333 45555556677766666667766677765
No 10
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=40.72 E-value=26 Score=28.43 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=21.7
Q ss_pred EEEEEecCCCCCEEEEEEEeeeeeccC
Q 042243 110 FLVGRVGPKEYRLYRCIARYGYRDIHK 136 (303)
Q Consensus 110 ~~v~~l~~~~~~iyr~v~ryGy~d~~~ 136 (303)
+.|..+...|.|.|+|.+.+|.-|..+
T Consensus 76 L~I~nl~~sDsG~Y~C~V~~g~~~~~~ 102 (112)
T cd05900 76 LEITELRSNDSGTYRCEVMHGIEDNYD 102 (112)
T ss_pred EEEeecccccCEEEEEEEecCCCCcee
Confidence 566777777889999999999877643
No 11
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=39.82 E-value=34 Score=28.37 Aligned_cols=16 Identities=13% Similarity=0.496 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhHH
Q 042243 13 IALSFIFLVAMYVWHY 28 (303)
Q Consensus 13 L~ia~vl~~iM~tW~~ 28 (303)
|+++++++++++.|+.
T Consensus 8 ii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 8 IIVAILLFLFLFYCHN 23 (130)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 12
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=38.18 E-value=36 Score=28.74 Aligned_cols=26 Identities=12% Similarity=0.390 Sum_probs=20.4
Q ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHH
Q 042243 9 AWVPIALSFIFLVAMYVWHYGTLKKY 34 (303)
Q Consensus 9 GW~pL~ia~vl~~iM~tW~~G~~~~~ 34 (303)
||+-|++.+++.++..+|+..+..+.
T Consensus 22 GWwll~~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 22 GWWLLLALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 78878888888888888887776664
No 13
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=37.63 E-value=20 Score=27.65 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=11.1
Q ss_pred HHHHHHhhcCCCCcc
Q 042243 272 GYDFLRRNSRGPTYA 286 (303)
Q Consensus 272 ~Y~fLR~N~R~~~~~ 286 (303)
-|.|||.||+.+.-.
T Consensus 25 ~~~~LRd~C~Ca~C~ 39 (89)
T PF06155_consen 25 PYEWLRDNCPCAECR 39 (89)
T ss_dssp EHHHHHHT-SSSSTC
T ss_pred CHHHHhccCCChhhc
Confidence 389999999987643
No 14
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=27.04 E-value=1.3e+02 Score=23.01 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 042243 10 WVPIALSFIFLVAMYVWHYGTLKKYEFD 37 (303)
Q Consensus 10 W~pL~ia~vl~~iM~tW~~G~~~~~~~~ 37 (303)
+..|++-++++.+||.|-.-..++.+.+
T Consensus 2 l~~li~lv~~~~i~yf~~~rpqkk~~k~ 29 (82)
T PF02699_consen 2 LSMLIPLVIIFVIFYFLMIRPQKKQQKE 29 (82)
T ss_dssp -HHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhheecHHHHHHHH
Confidence 4445555566666666555444444443
No 15
>PF10999 DUF2839: Protein of unknown function (DUF2839); InterPro: IPR021262 This bacterial family of unknown function appear to be restricted to Cyanobacteria.
Probab=25.79 E-value=44 Score=25.20 Aligned_cols=21 Identities=29% Similarity=0.748 Sum_probs=14.2
Q ss_pred eccc-CCccHHH-HHHHHHHHHH
Q 042243 3 IKFL-EGAWVPI-ALSFIFLVAM 23 (303)
Q Consensus 3 ~K~~-~GGW~pL-~ia~vl~~iM 23 (303)
.|+. .|+|+|+ +++++.++|-
T Consensus 37 ~~~ttkg~w~gig~l~~~wi~vr 59 (68)
T PF10999_consen 37 YKLTTKGPWIGIGILVLIWIIVR 59 (68)
T ss_pred HHHhhcccchhHHHHHHHHHHHH
Confidence 3455 8999999 6666555543
No 16
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=24.79 E-value=91 Score=21.35 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=19.5
Q ss_pred EEEEEecCCCCCEEEEEEEeeeeec
Q 042243 110 FLVGRVGPKEYRLYRCIARYGYRDI 134 (303)
Q Consensus 110 ~~v~~l~~~~~~iyr~v~ryGy~d~ 134 (303)
+.+..+...+.|.|+|.++.++...
T Consensus 53 l~i~~~~~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00410 53 LTISNVTPEDSGTYTCAATNSSGSA 77 (86)
T ss_pred EEEEeeccccCeEEEEEEEcCCCeE
Confidence 6777777777799999999776543
No 17
>smart00409 IG Immunoglobulin.
Probab=24.79 E-value=91 Score=21.35 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=19.5
Q ss_pred EEEEEecCCCCCEEEEEEEeeeeec
Q 042243 110 FLVGRVGPKEYRLYRCIARYGYRDI 134 (303)
Q Consensus 110 ~~v~~l~~~~~~iyr~v~ryGy~d~ 134 (303)
+.+..+...+.|.|+|.++.++...
T Consensus 53 l~i~~~~~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00409 53 LTISNVTPEDSGTYTCAATNSSGSA 77 (86)
T ss_pred EEEEeeccccCeEEEEEEEcCCCeE
Confidence 6777777777799999999776543
No 18
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=24.58 E-value=1.1e+02 Score=24.84 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=12.7
Q ss_pred CccHHHHHHHHHHHHHHHhH
Q 042243 8 GAWVPIALSFIFLVAMYVWH 27 (303)
Q Consensus 8 GGW~pL~ia~vl~~iM~tW~ 27 (303)
|+|..|++=++++.+||.+-
T Consensus 16 ~~~~~ll~lvii~~i~yf~~ 35 (106)
T PRK05585 16 SGLSSLLPLVVFFAIFYFLI 35 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHh
Confidence 45777776666666666544
No 19
>PF14612 Ino80_Iec3: IEC3 subunit of the Ino80 complex, chromatin re-modelling
Probab=22.84 E-value=39 Score=31.32 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=8.1
Q ss_pred HHHHHHhhc
Q 042243 272 GYDFLRRNS 280 (303)
Q Consensus 272 ~Y~fLR~N~ 280 (303)
+|+|||||-
T Consensus 215 VyNWLRKh~ 223 (232)
T PF14612_consen 215 VYNWLRKHQ 223 (232)
T ss_pred HHHHHHhcC
Confidence 799999994
No 20
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.82 E-value=96 Score=25.60 Aligned_cols=27 Identities=15% Similarity=0.360 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 042243 10 WVPIALSFIFLVAMYVWHYGTLKKYEF 36 (303)
Q Consensus 10 W~pL~ia~vl~~iM~tW~~G~~~~~~~ 36 (303)
|+-++|-+++++|+++....+.++.+.
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888888888776544
No 21
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=21.57 E-value=2.3e+02 Score=19.17 Aligned_cols=28 Identities=14% Similarity=0.515 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 042243 10 WVPIALSFIFLVAMYVWHYGTLKKYEFD 37 (303)
Q Consensus 10 W~pL~ia~vl~~iM~tW~~G~~~~~~~~ 37 (303)
|..-.++++++..+..|-.-+.++...+
T Consensus 8 W~sYg~t~~~l~~l~~~~~~~~r~~~~~ 35 (46)
T PF04995_consen 8 WSSYGVTALVLAGLIVWSLRRRRRLRKE 35 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666655555554443
No 22
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=21.13 E-value=1.3e+02 Score=19.35 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=18.8
Q ss_pred CccEEEEEecCCCCCEEEEEEEee
Q 042243 107 DERFLVGRVGPKEYRLYRCIARYG 130 (303)
Q Consensus 107 ~eR~~v~~l~~~~~~iyr~v~ryG 130 (303)
...+.+..+...+.|.|+|.++.+
T Consensus 38 ~~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 38 GSTLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred CcEEEEeeCCcccCEEEEEEEecC
Confidence 345788888877889999998754
No 23
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=20.04 E-value=21 Score=31.72 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=44.2
Q ss_pred HHHHHHcCcEE-EeeeeEEEecCCCChHHHHHHHHHHHH---HHhhcCCCCcccccCCCCeEeeec
Q 042243 238 LMDAREAGMAF-ILGHCYVRAKSGSSLMKRLVINLGYDF---LRRNSRGPTYALGIPCASTLEVGM 299 (303)
Q Consensus 238 l~~A~~~gvvY-ilG~~~v~a~~~S~~~kr~~in~~Y~f---LR~N~R~~~~~L~IP~~~lleVGm 299 (303)
+.+++++|+-- |+.+ .+.++=.++..++-|+|+|.- .++.+|...+-+++|.++++=||-
T Consensus 55 ~~e~k~~gi~v~vvSN--n~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVGD 118 (175)
T COG2179 55 LAELKEAGIKVVVVSN--NKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVGD 118 (175)
T ss_pred HHHHHhcCCEEEEEeC--CCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEcc
Confidence 56667778754 4443 555555677888889877765 367788888999999999998884
No 24
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.01 E-value=1.1e+02 Score=22.51 Aligned_cols=37 Identities=32% Similarity=0.583 Sum_probs=18.6
Q ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC--CChHH
Q 042243 9 AWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNK--VSINW 46 (303)
Q Consensus 9 GW~pL~ia~vl~~iM~tW~~G~~~~~~~~~~~~--v~l~~ 46 (303)
.|+++++..++.++. -|-|...+|.++...+. +++++
T Consensus 12 a~~t~~~~l~fiavi-~~ayr~~~K~~~d~aa~~~l~l~D 50 (60)
T COG4736 12 AWGTIAFTLFFIAVI-YFAYRPGKKGEFDEAARGILPLND 50 (60)
T ss_pred HHHHHHHHHHHHHHH-HHHhcccchhhHHHHhccCCCCCc
Confidence 366776655444332 34455555555444444 55543
Done!