Query 042243
Match_columns 303
No_of_seqs 210 out of 823
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 07:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rdd_B UPF0092 membrane protei 47.5 38 0.0013 21.2 4.8 19 8-26 1-19 (37)
2 2l6p_A PHAC1, PHAC2 and PHAD g 42.3 11 0.00039 30.1 2.0 21 273-295 30-50 (124)
3 2l6n_A Uncharacterized protein 36.7 16 0.00053 29.7 2.0 14 273-286 37-50 (132)
4 3luu_A Uncharacterized protein 35.2 13 0.00045 28.3 1.3 16 272-287 34-49 (101)
5 2od6_A Hypothetical protein; m 26.2 1E+02 0.0036 23.1 4.8 31 110-145 47-77 (110)
6 2o7g_A Probable RNA polymerase 24.0 25 0.00087 26.2 1.1 28 261-288 75-102 (112)
7 2j5h_A Teratocarcinoma-derived 14.3 33 0.0011 22.4 -0.2 9 4-12 7-15 (41)
8 1h3l_A RNA polymerase sigma fa 13.1 49 0.0017 23.3 0.4 23 261-283 64-86 (87)
9 1mhm_A Adometdc, samdc, S-aden 13.0 91 0.0031 28.5 2.3 23 230-252 60-86 (288)
10 2edj_A Roundabout homolog 2; K 12.6 1.7E+02 0.0059 20.2 3.3 26 107-132 61-86 (100)
No 1
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=47.55 E-value=38 Score=21.17 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=11.5
Q ss_pred CccHHHHHHHHHHHHHHHh
Q 042243 8 GAWVPIALSFIFLVAMYVW 26 (303)
Q Consensus 8 GGW~pL~ia~vl~~iM~tW 26 (303)
|||..++.-++++.+||..
T Consensus 1 ~~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 5676666655666666544
No 2
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=42.32 E-value=11 Score=30.10 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=14.8
Q ss_pred HHHHHhhcCCCCcccccCCCCeE
Q 042243 273 YDFLRRNSRGPTYALGIPCASTL 295 (303)
Q Consensus 273 Y~fLR~N~R~~~~~L~IP~~~ll 295 (303)
|.|||.||+++...-. .++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l 50 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVL 50 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCC
T ss_pred HHHHHhcCCCcccCCC--Ccccc
Confidence 6899999999765432 44444
No 3
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=36.70 E-value=16 Score=29.67 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=11.8
Q ss_pred HHHHHhhcCCCCcc
Q 042243 273 YDFLRRNSRGPTYA 286 (303)
Q Consensus 273 Y~fLR~N~R~~~~~ 286 (303)
|.|||.||+++...
T Consensus 37 ~~wLRd~Cpcaec~ 50 (132)
T 2l6n_A 37 CELLRVYSPSAEVH 50 (132)
T ss_dssp HHHHHHSCSCSSSS
T ss_pred HHHHHhcCCCcccC
Confidence 79999999997654
No 4
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=35.19 E-value=13 Score=28.34 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=10.5
Q ss_pred HHHHHHhhcCCCCccc
Q 042243 272 GYDFLRRNSRGPTYAL 287 (303)
Q Consensus 272 ~Y~fLR~N~R~~~~~L 287 (303)
=|.|||.||+.+...-
T Consensus 34 ~~~wLRd~c~ca~c~~ 49 (101)
T 3luu_A 34 TFEHLRVECPCAECKG 49 (101)
T ss_dssp EHHHHHHTCCCC----
T ss_pred CHHHHHhhCCChhhcC
Confidence 3889999999776543
No 5
>2od6_A Hypothetical protein; metagenomics target, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE OHA; 1.85A {Uncultured marine organism} SCOP: d.58.4.22
Probab=26.15 E-value=1e+02 Score=23.07 Aligned_cols=31 Identities=32% Similarity=0.653 Sum_probs=23.6
Q ss_pred EEEEEecCCCCCEEEEEEEeeeeeccCCchHHHHHH
Q 042243 110 FLVGRVGPKEYRLYRCIARYGYRDIHKDDLEFEKDL 145 (303)
Q Consensus 110 ~~v~~l~~~~~~iyr~v~ryGy~d~~~~~~~f~~~l 145 (303)
|...++-.++ .+||++..|-|+|. ..|+..+
T Consensus 47 fsmnrvwnkg-evfrvvmtyeykdr----asfeani 77 (110)
T 2od6_A 47 FSMNRVWNKG-EVFRVVMTYEYKDR----ASFEANI 77 (110)
T ss_dssp EEEEEECSSS-SCEEEEEEEEESSH----HHHHHHH
T ss_pred hhhhhhccCC-cEEEEEEEEEeccc----hhhhhhh
Confidence 6677777665 69999999999987 3565543
No 6
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=24.05 E-value=25 Score=26.16 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHHHhhcCCCCcccc
Q 042243 261 SSLMKRLVINLGYDFLRRNSRGPTYALG 288 (303)
Q Consensus 261 S~~~kr~~in~~Y~fLR~N~R~~~~~L~ 288 (303)
.+|+.+++.|.+..++|++.|.......
T Consensus 75 ~~wl~~i~~n~~~d~~R~~~~~~~~~~~ 102 (112)
T 2o7g_A 75 RTWLLAIARHVVADHIRHVRSRPRTTRG 102 (112)
T ss_dssp HHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 4689999999999999998887654433
No 7
>2j5h_A Teratocarcinoma-derived growth factor; hormone/growth factor, EGF-CFC family, cripto, tumour progression, cysteine-rich domains; NMR {Mus musculus} SCOP: g.3.11.7
Probab=14.32 E-value=33 Score=22.37 Aligned_cols=9 Identities=44% Similarity=1.342 Sum_probs=5.9
Q ss_pred cccCCccHH
Q 042243 4 KFLEGAWVP 12 (303)
Q Consensus 4 K~~~GGW~p 12 (303)
.|+||.|++
T Consensus 7 ~v~Hg~W~~ 15 (41)
T 2j5h_A 7 SILHGTWLP 15 (41)
T ss_dssp CCCCTTCSS
T ss_pred cccCCCeee
Confidence 467777754
No 8
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=13.06 E-value=49 Score=23.28 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHHHHhhcCCC
Q 042243 261 SSLMKRLVINLGYDFLRRNSRGP 283 (303)
Q Consensus 261 S~~~kr~~in~~Y~fLR~N~R~~ 283 (303)
.+|+.+++.|.++.++|++-|.+
T Consensus 64 ~~wl~~i~~n~~~d~~R~~~~~~ 86 (87)
T 1h3l_A 64 KAWLYRILTNTFINSYRKKQREP 86 (87)
T ss_dssp HHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHHHHHHHHHHHHhcccC
Confidence 46899999999999999877643
No 9
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=13.00 E-value=91 Score=28.53 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHH----HcCcEEEeee
Q 042243 230 DTREELQELMDAR----EAGMAFILGH 252 (303)
Q Consensus 230 ~~~~El~~l~~A~----~~gvvYilG~ 252 (303)
.-++|++.|++.. ..|.+|+||+
T Consensus 60 sf~eEV~~L~~~F~~~~~~G~aY~~G~ 86 (288)
T 1mhm_A 60 HFSEEVAVLDGYFGKLAAGSKAVIMGS 86 (288)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEEEEESS
T ss_pred CHHHHHHHHHHHhcccCCCceeEEeCC
Confidence 4689999999999 7899999996
No 10
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=12.57 E-value=1.7e+02 Score=20.17 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=20.6
Q ss_pred CccEEEEEecCCCCCEEEEEEEeeee
Q 042243 107 DERFLVGRVGPKEYRLYRCIARYGYR 132 (303)
Q Consensus 107 ~eR~~v~~l~~~~~~iyr~v~ryGy~ 132 (303)
...+.|..+...+.|.|.|++.-++-
T Consensus 61 ~~~L~i~~v~~~d~G~Y~C~a~n~~g 86 (100)
T 2edj_A 61 QGTLQIKNLRISDTGTYTCVATSSSG 86 (100)
T ss_dssp TCCEEEESCCTTTCCEEEEEEECSSC
T ss_pred CCEEEEccCCcccCEEEEEEEEcCCC
Confidence 34578888888888999999986553
Done!