Query 042243
Match_columns 303
No_of_seqs 210 out of 823
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 07:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042243.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042243hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 64.5 2.3 0.00016 23.4 2.3 20 9-28 5-24 (27)
2 d1or7a2 a.177.1.1 (A:-1-111) S 28.0 16 0.0012 25.8 2.6 24 261-284 73-96 (113)
3 d1cs6a3 b.1.1.4 (A:209-299) Ax 18.0 46 0.0034 21.9 3.3 25 104-128 51-75 (91)
4 d1iray2 b.1.1.4 (Y:102-204) Ty 17.1 33 0.0024 24.0 2.3 47 86-132 33-82 (103)
5 d1xmeb2 f.17.2.1 (B:3-36) Bact 16.4 43 0.0032 18.8 2.2 18 8-25 14-31 (34)
6 d1f97a1 b.1.1.1 (A:27-128) Jun 13.8 31 0.0023 23.2 1.3 24 110-133 67-90 (102)
7 d2c9aa1 b.1.1.4 (A:184-279) Re 13.6 41 0.003 22.3 1.9 21 110-130 62-82 (96)
8 d2j5ha1 g.3.11.7 (A:1-39) Crip 13.4 17 0.0012 21.8 -0.3 8 5-12 7-14 (39)
9 d1vlfn1 b.3.5.1 (N:196-274) Tr 13.2 82 0.006 20.9 3.5 27 105-134 35-62 (79)
10 d1eaja_ b.1.1.1 (A:) Coxsackie 13.0 36 0.0026 23.2 1.6 22 110-131 90-111 (124)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=64.47 E-value=2.3 Score=23.42 Aligned_cols=20 Identities=35% Similarity=0.863 Sum_probs=16.6
Q ss_pred ccHHHHHHHHHHHHHHHhHH
Q 042243 9 AWVPIALSFIFLVAMYVWHY 28 (303)
Q Consensus 9 GW~pL~ia~vl~~iM~tW~~ 28 (303)
||+.|++-+.-.+-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 89999888888888888853
No 2
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=28.00 E-value=16 Score=25.75 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHHHHhhcCCCC
Q 042243 261 SSLMKRLVINLGYDFLRRNSRGPT 284 (303)
Q Consensus 261 S~~~kr~~in~~Y~fLR~N~R~~~ 284 (303)
.+|+.+++.|.++.++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998653
No 3
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=17.99 E-value=46 Score=21.94 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=19.6
Q ss_pred cCCCccEEEEEecCCCCCEEEEEEE
Q 042243 104 VRPDERFLVGRVGPKEYRLYRCIAR 128 (303)
Q Consensus 104 V~~~eR~~v~~l~~~~~~iyr~v~r 128 (303)
+.....+.|..+...+.|.|.|++.
T Consensus 51 ~~~~~~L~I~~v~~~D~G~Y~C~a~ 75 (91)
T d1cs6a3 51 LSSEPLLHIQNVDFEDEGTYECEAE 75 (91)
T ss_dssp SBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred eeeeeEEEeCCCCccCCEEEEEEEE
Confidence 3344457888888888899999997
No 4
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.12 E-value=33 Score=23.97 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=28.6
Q ss_pred ccceEEEEEEeeeecc---cccCCCccEEEEEecCCCCCEEEEEEEeeee
Q 042243 86 AFHQVVVFLCIKSVPV---PHVRPDERFLVGRVGPKEYRLYRCIARYGYR 132 (303)
Q Consensus 86 ~lhe~~vfv~v~~~~v---P~V~~~eR~~v~~l~~~~~~iyr~v~ryGy~ 132 (303)
-.+++.||-.=+.++. -++..+..+.|..+...+.|.|+|++.+.|.
T Consensus 33 p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 33 ELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp BCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcC
Confidence 3455666654333321 1222234567777887888999999987664
No 5
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=16.39 E-value=43 Score=18.81 Aligned_cols=18 Identities=17% Similarity=0.700 Sum_probs=12.4
Q ss_pred CccHHHHHHHHHHHHHHH
Q 042243 8 GAWVPIALSFIFLVAMYV 25 (303)
Q Consensus 8 GGW~pL~ia~vl~~iM~t 25 (303)
-||+.+.+|.++.+|-++
T Consensus 14 kgwlafslamlfvfiali 31 (34)
T d1xmeb2 14 KGWLAFSLAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 489888887766665443
No 6
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.76 E-value=31 Score=23.18 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=18.2
Q ss_pred EEEEEecCCCCCEEEEEEEeeeee
Q 042243 110 FLVGRVGPKEYRLYRCIARYGYRD 133 (303)
Q Consensus 110 ~~v~~l~~~~~~iyr~v~ryGy~d 133 (303)
..|..+...+.|.|+|.+.-.+..
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~ 90 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQ 90 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSS
T ss_pred EEEeECCccCCEEEEEEEEECCCC
Confidence 456677777789999999865543
No 7
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.61 E-value=41 Score=22.34 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=16.5
Q ss_pred EEEEEecCCCCCEEEEEEEee
Q 042243 110 FLVGRVGPKEYRLYRCIARYG 130 (303)
Q Consensus 110 ~~v~~l~~~~~~iyr~v~ryG 130 (303)
+.|..+...+.|.|+|++.=.
T Consensus 62 L~I~~v~~~D~G~Y~C~a~N~ 82 (96)
T d2c9aa1 62 FNVVNTTKRDAGKYRCMIRTE 82 (96)
T ss_dssp EEECSCCGGGCSEEEEEEEET
T ss_pred EEECCCCHHHCeEEEEEEEeC
Confidence 667777777789999999643
No 8
>d2j5ha1 g.3.11.7 (A:1-39) Cripto growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.36 E-value=17 Score=21.83 Aligned_cols=8 Identities=50% Similarity=1.506 Sum_probs=4.8
Q ss_pred ccCCccHH
Q 042243 5 FLEGAWVP 12 (303)
Q Consensus 5 ~~~GGW~p 12 (303)
||||-|+|
T Consensus 7 vpHg~w~~ 14 (39)
T d2j5ha1 7 ILHGTWLP 14 (39)
T ss_dssp CCCTTCSS
T ss_pred ccCCceec
Confidence 56666654
No 9
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=13.21 E-value=82 Score=20.93 Aligned_cols=27 Identities=11% Similarity=-0.064 Sum_probs=22.1
Q ss_pred CCCccEEEEEecCCCCCEEEEEEEe-eeeec
Q 042243 105 RPDERFLVGRVGPKEYRLYRCIARY-GYRDI 134 (303)
Q Consensus 105 ~~~eR~~v~~l~~~~~~iyr~v~ry-Gy~d~ 134 (303)
...=+|.+..+.+ |-|.+.+.| ||...
T Consensus 35 d~~G~F~f~~l~~---G~Y~l~is~~Gy~~~ 62 (79)
T d1vlfn1 35 NFFGEFKFDALDN---GEYTVEIDADGKSYS 62 (79)
T ss_dssp CTTSEEEEEEECS---EEEEEEEEETTEEEE
T ss_pred CCCCcEEEEecCC---CCEEEEEEEecccce
Confidence 4456699999988 899999999 88754
No 10
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.05 E-value=36 Score=23.22 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=17.5
Q ss_pred EEEEEecCCCCCEEEEEEEeee
Q 042243 110 FLVGRVGPKEYRLYRCIARYGY 131 (303)
Q Consensus 110 ~~v~~l~~~~~~iyr~v~ryGy 131 (303)
..|..+...|.|.|+|.+..+-
T Consensus 90 L~I~~v~~~D~G~Y~C~v~~~~ 111 (124)
T d1eaja_ 90 INVTNLQLSDIGTYQCKVKKAP 111 (124)
T ss_dssp EEECSCCGGGCEEEEEEEEETT
T ss_pred EEEcccEEccCEEEEEEEEECC
Confidence 4577777888899999998653
Done!