BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042244
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
DD G T L+ A+KG+L ++VL+K+ D+ N D + P+ AA +GH + + L
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVL-- 99
Query: 150 VTHGVDIYS 158
+ +G D+ +
Sbjct: 100 LKNGADVNA 108
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
DD G T L+ A G L ++VL+K D+ N D+ P+ AAY GH + + L +
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVL--L 92
Query: 151 THGVDIYS 158
HG D+ +
Sbjct: 93 KHGADVNA 100
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
D +G+T L+ A G+L ++VL+K D+ N DTL S P+ AA+ GH + + L +
Sbjct: 44 DVVGWTPLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVL--L 100
Query: 151 THGVDIYSGND 161
+G D+ + +D
Sbjct: 101 KNGADVNAKDD 111
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
+DD G T L+ A +G+L ++VL+KY D+ N +D + +G++D + L++
Sbjct: 109 KDDNGITPLHLAANRGHLEIVEVLLKYGADV-NAQDKFGKTAFDISINNGNEDLAEILQK 167
Query: 150 VT 151
+
Sbjct: 168 LN 169
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
RD G+T L+ A G+L ++VL+KY D+ N +D P+ AA GH + + L
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVL-- 132
Query: 150 VTHGVDIYS 158
+ HG D+ +
Sbjct: 133 LKHGADVNA 141
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
D G T L+ A G+L ++VL+KY D+ N +D P+ AAY GH + + L +
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVL--L 121
Query: 151 THGVDI 156
HG D+
Sbjct: 122 KHGADV 127
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
DD G T L+ A +G+L ++VL+K+ D+ N RD P+ AA GH + + L E
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLLE- 101
Query: 151 THGVDIYS 158
+G D+ +
Sbjct: 102 -YGADVNA 108
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTH 152
+G+T L+ A G+L ++VL+KY D+ N D + P+ AA +GH + + L + H
Sbjct: 46 LGHTPLHLAAKTGHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHLEIVEVL--LKH 102
Query: 153 GVDI 156
G D+
Sbjct: 103 GADV 106
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
+D G+T L+ A G+L ++VL+KY D+ N +D + +G++D + L++
Sbjct: 109 KDYEGFTPLHLAAYDGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167
Query: 150 VT 151
+
Sbjct: 168 LN 169
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
D+ G T L+ A G+L ++VL+KY D+ N D P+ AA GH + + L +
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIVEVL--L 100
Query: 151 THGVDIYS 158
HG D+ +
Sbjct: 101 KHGADVNA 108
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
DD G T L+ A +G+L ++VL+K+ D+ N D+ P+ AA GH + + L E
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLE- 101
Query: 151 THGVDIYS 158
+G D+ +
Sbjct: 102 -YGADVNA 108
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
+GYT L+ + GN++ +K L+++ D+ N + L P+ QAA GH D L
Sbjct: 310 MGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLL 363
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
G+T L+ A+ G+L ++VL+KY D+ N D S P+ AA GH + + L + +G
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADV-NAFDMTGSTPLHLAADEGHLEIVEVL--LKYG 136
Query: 154 VDI 156
D+
Sbjct: 137 ADV 139
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
RD G+T L+ A G+L ++VL+K D+ N +D+L P+ AA GH + + L
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVL-- 99
Query: 150 VTHGVDIYS 158
+ +G D+ +
Sbjct: 100 LKNGADVNA 108
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
D+ GYT L+ A G+L ++VL+K D+ N D P+ AA GH + + L +
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGHLEIVEVL--L 100
Query: 151 THGVDIYS-GNDG 162
HG D+ + NDG
Sbjct: 101 KHGADVNAYDNDG 113
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
DD G T L+ A +G+L ++VL+K+ D+ N D P+ AA GH + + L E
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLE- 101
Query: 151 THGVDIYS 158
+G D+ +
Sbjct: 102 -YGADVNA 108
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 19/106 (17%)
Query: 60 VELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPD 119
V LW+D +D L Q DD G++ L+ +G +++L+
Sbjct: 21 VRLWLDNTEND----------------LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64
Query: 120 LTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANM 165
+ N + D P+ AA HGH+D Q L + + DI + N+ N+
Sbjct: 65 I-NVMNRGDDTPLHLAASHGHRDIVQKL--LQYKADINAVNEHGNV 107
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
+D G + ++ A G L LKVLV++ D+ N D+ SLP+ A GH +L
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
+D G + ++ A G L LKVLV++ D+ N D+ SLP+ A GH +L
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
+D TA+++ A KGNL+ + +L+ Y TN +DT + P+ A + ++L
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFL-- 191
Query: 150 VTHGVDIYSGN 160
VT G IY N
Sbjct: 192 VTQGASIYIEN 202
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
+D TA+++ A KGNL+ + +L+ Y TN +DT + P+ A + ++L
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFL-- 191
Query: 150 VTHGVDIYSGN 160
VT G IY N
Sbjct: 192 VTQGASIYIEN 202
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 19/106 (17%)
Query: 60 VELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPD 119
V LW+D +D L Q DD G++ L+ +G +++L+
Sbjct: 16 VRLWLDNTEND----------------LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 59
Query: 120 LTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANM 165
+ N + D P+ AA HGH+D Q L + + DI + N+ N+
Sbjct: 60 I-NVMNRGDDTPLHLAASHGHRDIVQKL--LQYKADINAVNEHGNV 102
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
D G+T L+ A +G+L ++VL+KY D+ N D P+ AA GH + + L +
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVL--L 133
Query: 151 THGVDI 156
+G D+
Sbjct: 134 KYGADV 139
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
D G T L+ G+L ++VL+KY D+ N D P+ AAY GH + + L
Sbjct: 43 NDWFGITPLHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVL-- 99
Query: 150 VTHGVDI 156
+ +G D+
Sbjct: 100 LKYGADV 106
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
D +G+T L+ A G+L ++VL+K D+ N D+L P+ AA GH + + L +
Sbjct: 44 DHVGWTPLHLAAYFGHLEIVEVLLKNGADV-NADDSLGVTPLHLAADRGHLEVVEVL--L 100
Query: 151 THGVDIYS 158
+G D+ +
Sbjct: 101 KNGADVNA 108
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
+D GYT L+ A +G+L ++VL+K D+ N +D P+ AA GH + + L
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVL 99
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
+D GYT L+ A +G+L ++VL+K D+ N +D P+ AA GH + + L
Sbjct: 76 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVL 132
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
+D GYT L+ A +G+L ++VL+K D+ N +D P+ AA GH + + L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVL 87
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
+D GYT L+ A +G+L ++VL+K D+ N +D P+ AA GH + + L
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVL 120
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
+D GYT L+ A +G+L ++VL+K D+ N +D P+ AA GH + + L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVL-- 87
Query: 150 VTHGVDIYS 158
+ G D+ +
Sbjct: 88 LKAGADVNA 96
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
+D GYT L+ A +G+L ++VL+K D+ N +D P+ AA GH + + L
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVL-- 120
Query: 150 VTHGVDIYS 158
+ G D+ +
Sbjct: 121 LKAGADVNA 129
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 97 ALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
+++Q A +G L LK ++ +L NK D P+I A+ G +T ++L E
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 97 ALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
+++Q A +G L LK ++ +L NK D P+I A+ G +T ++L E
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
D +G TAL++ A+ G+L+ ++L+ Y D ++ SL AA G++ Q L E
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSYGSD-----PSIISLQGFTAAQMGNEAVQQILSES 331
Query: 151 T 151
T
Sbjct: 332 T 332
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
+D TA+++ A KGNL+ + +L+ Y TN +DT + P+ A + + L
Sbjct: 135 KDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLL-- 191
Query: 150 VTHGVDIYSGN 160
V+ G IY N
Sbjct: 192 VSQGASIYIEN 202
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
+D TA+++ A KGNL+ + +L+ Y TN +DT + P+ A + + L
Sbjct: 136 KDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLL-- 192
Query: 150 VTHGVDIYSGN 160
V+ G IY N
Sbjct: 193 VSQGASIYIEN 203
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 78 LASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAY 137
L + DP +D G+T L++ G+L+ +++L+++ L N + P+ AA
Sbjct: 30 LQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLLQHKA-LVNTTGYQNDSPLHDAAK 85
Query: 138 HGHKDTFQYL 147
+GH D + L
Sbjct: 86 NGHVDIVKLL 95
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLD---------SLPVIQAAYHGHKDTF 144
G+TA + AV G ++ALK L K ++ +R T + + ++ AA GH +
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164
Query: 145 QYL 147
+ L
Sbjct: 165 KIL 167
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 82 VDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHK 141
DP TL + ++ A +G L L VL + L + RD LPV A GH+
Sbjct: 73 ADPATLTR-------PVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHR 124
Query: 142 DTFQYLREVTHGV 154
D +YLR G
Sbjct: 125 DVARYLRAAAGGT 137
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 82 VDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHK 141
DP TL + ++ A +G L L VL + L + RD LPV A GH+
Sbjct: 73 ADPATLTR-------PVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHR 124
Query: 142 DTFQYLREVTHGV 154
D +YLR G
Sbjct: 125 DVARYLRAAAGGT 137
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
D G+T L+ A G+L ++VL+K D+ N D P+ AA GH + + L
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVL-- 99
Query: 150 VTHGVDIYS 158
+ +G D+ +
Sbjct: 100 LKNGADVNA 108
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLD---------SLPVIQAAYHGHKDTF 144
G+TA + AV G ++ALK L K ++ +R T + + ++ AA GH +
Sbjct: 125 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 184
Query: 145 QYL 147
+ L
Sbjct: 185 KIL 187
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 87 LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
++ D GYT L+ A G+L ++VL+K D+ N D+ P+ AA G+ + +
Sbjct: 73 VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV-NAMDSDGMTPLHLAAKWGYLEIVEV 131
Query: 147 LREVTHGVDI 156
L + HG D+
Sbjct: 132 L--LKHGADV 139
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 98 LYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIY 157
L+ +G+ + +K L+ N NK+D + P+I A GH + L + HG I
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALL--LQHGASIN 179
Query: 158 SGNDGAN--MLSRLIDATLYDVALDLL 182
+ N+ N + +I+ ++ V L LL
Sbjct: 180 ASNNKGNTALHEAVIEKHVFVVELLLL 206
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 89 QRDDIGYTALYQCAVKGNLRALKVLVKYN 117
Q DD G TALY GN + +K+ VK N
Sbjct: 90 QFDDKGNTALYYAVDSGNXQTVKLFVKKN 118
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 25/115 (21%)
Query: 34 DFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDI 93
DF + P L AK G + I +++ DV +DD I
Sbjct: 77 DFSGSTPLHLAAKR---GHLEIVEVLLKYGADVNADDT---------------------I 112
Query: 94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLR 148
G T L+ A G+L ++VL+KY D+ N +D + +G++D + L+
Sbjct: 113 GSTPLHLAADTGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
G+T L+ A+ G+L ++VL+K D+ N P+ AA+ H + + L + HG
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVEVL--LKHG 103
Query: 154 VDIYS 158
D+ +
Sbjct: 104 ADVNA 108
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 51/138 (36%), Gaps = 34/138 (24%)
Query: 74 LLDKLASKVDPQ--------------TLEQRDDI-------------------GYTALYQ 100
LLD KVD Q TL+ +DDI G TAL
Sbjct: 130 LLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALML 189
Query: 101 CAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGN 160
G + +K L+ D+ N +D S ++ A HGHK+ L V +
Sbjct: 190 AVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDR 248
Query: 161 DGANMLSRLIDATLYDVA 178
DG+ L +DA ++A
Sbjct: 249 DGSTALMVALDAGQSEIA 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,315,757
Number of Sequences: 62578
Number of extensions: 407528
Number of successful extensions: 938
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 60
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)