BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042246
(639 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 132/240 (55%), Gaps = 15/240 (6%)
Query: 338 KFDLFKKFDAVED-----HLDHHYASKASLKQPTNK--WAKRIQEE----WKILENDLPD 386
+FD F+ ED +++HY S+ N A+R+ +E L
Sbjct: 39 QFDTFEXVSEDEDGKLGFKVNYHYXSQVKNANDANSAARARRLAQEAVTLSTSLPLSSSS 98
Query: 387 TIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGG---LRL 443
++FVR E R+D+ + +I G TPY +G F FDV+FP YP+ PP V + G +R
Sbjct: 99 SVFVRCDEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRF 158
Query: 444 NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWN 503
NPNLYN GKVCLS+LNTW G EKW P S+ LQVLVS+Q+LIL +PYFNEPGY
Sbjct: 159 NPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSR 218
Query: 504 NTAHGEVESHKYNESTFILSLK-TMLYTLRRPPKHFKDFVIGHFYKHAHDILAACKTYMS 562
T G S +Y+ + ++K L +R P FK+ + HFY +I A C+ +++
Sbjct: 219 GTPSGTQSSREYDGNIRQATVKWAXLEQIRNPSPCFKEVIHKHFYLKRVEIXAQCEEWIA 278
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 16/150 (10%)
Query: 371 KRIQEEWKILENDLPDTIF---VRVYESRMDLLR--AVIVGAEGTPYHDGLFFFDVFFPS 425
+R+QEE K D P + V+ + MDL + A I G EGT + G++ V +P+
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 426 SYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQA 485
YP+ PP V + +G +PN+Y G +CLS+L N+++ W P + T+ Q+++ +Q
Sbjct: 69 EYPSKPPKVKFPAG--FYHPNVYPSGTICLSIL-----NEDQDWRPAI-TLKQIVLGVQD 120
Query: 486 LILNQKPYFNEPGYA-SWNNTAHGEVESHK 514
L+ + P N P +W + + + E K
Sbjct: 121 LLDSPNP--NSPAQEPAWRSFSRNKAEYDK 148
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 16/150 (10%)
Query: 371 KRIQEEWKILENDLPDTIF---VRVYESRMDLLR--AVIVGAEGTPYHDGLFFFDVFFPS 425
+R+QEE K D P + V+ + MDL + A I G EGT + G++ V +P+
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 426 SYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQA 485
YP+ PP V + +G +PN+Y G +CLS+L N+++ W P + T+ Q+++ +Q
Sbjct: 67 EYPSKPPKVKFPAG--FYHPNVYPSGTICLSIL-----NEDQDWRPAI-TLKQIVLGVQD 118
Query: 486 LILNQKPYFNEPGYA-SWNNTAHGEVESHK 514
L+ + P N P +W + + + E K
Sbjct: 119 LLDSPNP--NSPAQEPAWRSFSRNKAEYDK 146
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
+R+ ++K L+ D P + E+ + AVI G EGTP+ DG F + F YPN
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALI 487
PP V + S +PN+Y G +CL +L +W P + +L SIQ+L+
Sbjct: 67 PPTVRFLSK--MFHPNVYADGSICLDILQN-------RWSPTYD-VSSILTSIQSLL 113
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G E +PY G+FF ++ FPS YP
Sbjct: 24 KRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
PP V + + +PN+ + G +CL +L ++W P + T+ +VL+SI +L+ +
Sbjct: 84 PPKVNFTTK--IYHPNINSQGAICLDIL-------KDQWSPAL-TISKVLLSISSLLTDP 133
Query: 491 KP 492
P
Sbjct: 134 NP 135
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
+R+ ++K ++ D P + + + A+I+G TPY DG F + F YPN
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
PP+V + S +PN+Y G++CL +L +W P + +L SIQ+L
Sbjct: 67 PPHVKFLSE--MFHPNVYANGEICLDILQN-------RWTPTYD-VASILTSIQSL---- 112
Query: 491 KPYFNEPGYAS 501
FN+P AS
Sbjct: 113 ---FNDPNPAS 120
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRIQ+E + L+ D P + +A I+G +PY G+FF + FP+ YP
Sbjct: 9 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFK 68
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
PP V + + +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 69 PPKVAFTTK--IYHPNINSNGSICLDILRS-------QWSPAL-TVSKVLLSICSLLCDP 118
Query: 491 KP 492
P
Sbjct: 119 NP 120
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KR+ ++K L+ D P I ++ + L AVI G + TP+ G F + F YPN
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
PP V + S +PN+Y G +CL +L +W P + + +L SIQ+L+ +
Sbjct: 67 PPTVRFVSR--MFHPNIYADGSICLDILQN-------QWSP-IYDVAAILTSIQSLLCDP 116
Query: 491 KP 492
P
Sbjct: 117 NP 118
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
+RI +E + L N+ P I +I G +GTPY G + ++F P YP
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
PP V + + +PN+ G++CL +L +KW P + + VL+SIQAL+ +
Sbjct: 64 PPKVRFLTK--IYHPNIDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALLSSP 113
Query: 491 KP 492
+P
Sbjct: 114 EP 115
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
+RI +E + L N+ P I +I G +GTPY G + ++F P YP
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
PP V + + +PN+ G++CL +L +KW P + + VL+SIQAL+ +
Sbjct: 64 PPKVRFLTK--IYHPNIDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALLSSP 113
Query: 491 KP 492
+P
Sbjct: 114 EP 115
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
+R+ ++K L+ D P + E + A+I G + TP+ DG F + F YPN
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALI 487
PP V + S +PN+Y G +CL +L +W P + +L SIQ+L+
Sbjct: 70 PPTVKFISK--MFHPNVYADGSICLDILQN-------RWSPTYD-VAAILTSIQSLL 116
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
+R+ ++K L+ D P + E + A+I G + TP+ DG F + F YPN
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALI 487
PP V + S +PN+Y G +CL +L +W P + +L SIQ+L+
Sbjct: 67 PPTVKFISK--MFHPNVYADGSICLDILQN-------RWSPTYD-VAAILTSIQSLL 113
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 370 AKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
+KRI +E LE D P + + +A I+G +PY G+FF + FP+ YP
Sbjct: 4 SKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPF 63
Query: 430 VPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP + + + +PN+ G +CL +L ++W P + T+ +VL+SI +L+ +
Sbjct: 64 KPPKISFTTK--IYHPNINANGNICLDIL-------KDQWSPAL-TLSKVLLSICSLLTD 113
Query: 490 QKP 492
P
Sbjct: 114 ANP 116
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 370 AKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
A R++ E +L + P I + +MD LRA I+G TPY G+F +V P YP
Sbjct: 6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 430 VPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP + + + +PN+ + G++CL +L W P+++ + VL SIQ L+
Sbjct: 66 EPPQIRFLTP--IYHPNIDSAGRICLDVLKL---PPKGAWRPSLN-IATVLTSIQLLMSE 119
Query: 490 QKPYFNEPGYASWNNTAHGEVESHKYNESTFI 521
P ++P A ++ KYN+ F+
Sbjct: 120 PNP--DDPLMADISS-------EFKYNKPAFL 142
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
+RIQ+E + ++ D P + A I G + +PY GLFF DV FP YP
Sbjct: 7 RRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFK 66
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
P V + + +PN+ G +CL +L ++W P + T+ +VL+SI +L+ +
Sbjct: 67 APRVTFMTKV--YHPNINKNGVICLDIL-------KDQWSPAL-TLSRVLLSISSLLTDP 116
Query: 491 KP 492
P
Sbjct: 117 NP 118
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRIQ+E + L D P + +A I+G +PY G+FF + FP+ YP
Sbjct: 7 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 66
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 67 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLCD 115
Query: 490 QKP 492
P
Sbjct: 116 PNP 118
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E + L +D I ++ + + I G E +PY DG+F +++ P YP
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
P V + + +PN+ G++CL +L T W P + + VL+SIQAL+ +
Sbjct: 68 APKVRFLTKI--YHPNIDRLGRICLDVLKT-------NWSPALQ-IRTVLLSIQALLASP 117
Query: 491 KP 492
P
Sbjct: 118 NP 119
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 362 LKQPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDV 421
L P KRI +E L D P M +A I+G +PY G+FF +
Sbjct: 3 LGSPEFMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTI 62
Query: 422 FFPSSYPNVPPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVL 480
FP+ YP PP V + + R+ +PN+ + G +CL +L + +W P + T+ +VL
Sbjct: 63 HFPTDYPFKPPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVL 111
Query: 481 VSIQALILNQKP 492
+SI +L+ + P
Sbjct: 112 LSICSLLCDPNP 123
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 9 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 68
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 69 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLCD 117
Query: 490 QKP 492
P
Sbjct: 118 PNP 120
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 6 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLCD 114
Query: 490 QKP 492
P
Sbjct: 115 PNP 117
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLCD 114
Query: 490 QKP 492
P
Sbjct: 115 PNP 117
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLCD 114
Query: 490 QKP 492
P
Sbjct: 115 PNP 117
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 82 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLCD 130
Query: 490 QKP 492
P
Sbjct: 131 PNP 133
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 3 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 63 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLCD 111
Query: 490 QKP 492
P
Sbjct: 112 PNP 114
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI E L D P + + +A I+G +PY G+FF + FP+ YP
Sbjct: 4 KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL +L ++W P + T+ +VL+SI +L+ +
Sbjct: 64 PPKVNFTT---RIYHPNINSNGSICLDIL-------RDQWSPAL-TISKVLLSISSLLTD 112
Query: 490 QKP 492
P
Sbjct: 113 PNP 115
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWGPAL-TISKVLLSICSLLCD 114
Query: 490 QKP 492
P
Sbjct: 115 PNP 117
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 64 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLCD 112
Query: 490 QKP 492
P
Sbjct: 113 PNP 115
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 14 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 74 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLCD 122
Query: 490 QKP 492
P
Sbjct: 123 PNP 125
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 14 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 74 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLCD 122
Query: 490 QKP 492
P
Sbjct: 123 PNP 125
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL L + +W P + T+ +VL+SI +L+ +
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSICLDALRS-------QWSPAL-TISKVLLSICSLLCD 114
Query: 490 QKP 492
P
Sbjct: 115 PNP 117
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRIQ+E L+ D P + +A I+G + Y G+FF V FP+ YP
Sbjct: 6 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
PP + + + +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 66 PPKIAFTTK--IYHPNINSNGSICLDILRS-------QWSPAL-TVSKVLLSICSLLCDP 115
Query: 491 KP 492
P
Sbjct: 116 NP 117
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRIQ+E L+ D P + +A I+G + Y G+FF V FP+ YP
Sbjct: 10 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
PP + + + +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 70 PPKIAFTTK--IYHPNINSNGSICLDILRS-------QWSPAL-TVSKVLLSICSLLCDP 119
Query: 491 KP 492
P
Sbjct: 120 NP 121
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 370 AKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYP 428
AKRI +E + +++D I + V ES + L+ +G GTPY G F D+ P YP
Sbjct: 4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 63
Query: 429 NVPPNVYYHSGGLRLNPNLYNC-GKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALI 487
PP + + + +PN+ + G +CL +L W P + T+ L+S+QAL+
Sbjct: 64 FKPPKMQFDTK--VYHPNISSVTGAICLDILRN-------AWSP-VITLKSALISLQALL 113
Query: 488 LNQKPYFNEP 497
Q P N+P
Sbjct: 114 --QSPEPNDP 121
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRIQ+E L+ D P + +A I+G + Y G+FF V FP+ YP
Sbjct: 22 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 81
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
PP + + + +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 82 PPKIAFTTK--IYHPNINSNGSICLDILRS-------QWSPAL-TVSKVLLSICSLLCDP 131
Query: 491 KP 492
P
Sbjct: 132 NP 133
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A +G +PY G+FF + FP+ YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G +CL +L + +W P + T+ +VL+SI +L+ +
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSPAL-TISKVLLSICSLLCD 114
Query: 490 QKP 492
P
Sbjct: 115 PNP 117
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 370 AKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYP 428
AKRI +E + +++D I + V ES + L+ +G GTPY G F D+ P YP
Sbjct: 3 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62
Query: 429 NVPPNVYYHSGGLRLNPNLYNC-GKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALI 487
PP + + + +PN+ + G +CL +L W P + T+ L+S+QAL+
Sbjct: 63 FKPPKMQFDTK--VYHPNISSVTGAICLDILKN-------AWSPVI-TLKSALISLQALL 112
Query: 488 LNQKPYFNEP 497
Q P N+P
Sbjct: 113 --QSPEPNDP 120
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 12/127 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E + L +D I ++ + + I G E +PY DG+F +++ P YP
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
P V + + +PN+ G++CL +L T W P + + VL+SIQAL+ +
Sbjct: 66 APKVRFLTK--IYHPNIDRLGRICLDVLKT-------NWSPALQ-IRTVLLSIQALLASP 115
Query: 491 KPYFNEP 497
P N+P
Sbjct: 116 NP--NDP 120
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 372 RIQEEWKILENDLPDTIFVRVY----ESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFPS 425
R+ +E K D P FV V + M+L+ I G +GTP+ GLF + F
Sbjct: 11 RLAQERKAWRKDHPFG-FVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKD 69
Query: 426 SYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQA 485
YP+ PP + +PN+Y G VCLS+L +++ W P + T+ Q+L+ IQ
Sbjct: 70 DYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQE 121
Query: 486 LILNQKPYFNEPGYA 500
L+ +P +P A
Sbjct: 122 LL--NEPNIQDPAQA 134
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 397 MDLL--RAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVC 454
M+L+ I G +GTP+ GLF + F YP+ PP + +PN+Y G VC
Sbjct: 38 MNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVC 95
Query: 455 LSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYA-SWNNTAHGEVESH 513
LS+L +++ W P + T+ Q+L+ IQ L+ +P +P A ++ VE
Sbjct: 96 LSIL-----EEDKDWRPAI-TIKQILLGIQELL--NEPNIQDPAQAEAYTIYCQNRVEYE 147
Query: 514 K 514
K
Sbjct: 148 K 148
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 372 RIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVP 431
R+Q+E K +EN+ I + +S I G EGTPY G F + P+ YP P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 432 PNVYYHSGGLRLNPNLYN-CGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
P + + + +PN+ + G +CL +L KNE W P + T+ L+SIQAL+ +
Sbjct: 87 PKIKFVTK--IWHPNISSQTGAICLDVL------KNE-WSPAL-TIRTALLSIQALLSDP 136
Query: 491 KP 492
+P
Sbjct: 137 QP 138
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 397 MDLL--RAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVC 454
M+L+ I G +GTP+ GLF + F YP+ PP + +PN+Y G VC
Sbjct: 37 MNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVC 94
Query: 455 LSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYA-SWNNTAHGEVESH 513
LS+L +++ W P + T+ Q+L+ IQ L+ +P +P A ++ VE
Sbjct: 95 LSIL-----EEDKDWRPAI-TIKQILLGIQELL--NEPNIQDPAQAEAYTIYCQNRVEYE 146
Query: 514 K 514
K
Sbjct: 147 K 147
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 372 RIQEEWKILENDLPDTIFVRVY----ESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFPS 425
R+ +E K D P FV V + M+L+ I G +GTP+ GLF + F
Sbjct: 13 RLAQERKAWRKDHPFG-FVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKD 71
Query: 426 SYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQA 485
YP+ PP + +PN+Y G VCLS+L +++ W P + T+ Q+L+ IQ
Sbjct: 72 DYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQE 123
Query: 486 LILNQKPYFNEPGYA-SWNNTAHGEVESHK 514
L+ +P +P A ++ VE K
Sbjct: 124 LL--NEPNIQDPAQAEAYTIYCQNRVEYEK 151
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 397 MDLL--RAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVC 454
M+L+ I G +GTP+ GLF + F YP+ PP + +PN+Y G VC
Sbjct: 36 MNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVC 93
Query: 455 LSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYA-SWNNTAHGEVESH 513
LS+L +++ W P + T+ Q+L+ IQ L+ +P +P A ++ VE
Sbjct: 94 LSIL-----EEDKDWRPAI-TIKQILLGIQELL--NEPNIQDPAQAEAYTIYCQNRVEYE 145
Query: 514 K 514
K
Sbjct: 146 K 146
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 397 MDLL--RAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVC 454
M+L+ I G +GTP+ GLF + F YP+ PP + +PN+Y G VC
Sbjct: 38 MNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVC 95
Query: 455 LSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYA-SWNNTAHGEVESH 513
LS+L +++ W P + T+ Q+L+ IQ L+ +P +P A ++ VE
Sbjct: 96 LSIL-----EEDKDWRPAI-TIKQILLGIQELL--NEPNIQDPAQAEAYTIYCQNRVEYE 147
Query: 514 K 514
K
Sbjct: 148 K 148
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 22/136 (16%)
Query: 372 RIQEEWKILENDLPDTIFVRVY----ESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFPS 425
R+ +E K D P FV V + M+L+ I G +GTP+ GLF + F
Sbjct: 11 RLAQERKAWRKDHPFG-FVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKD 69
Query: 426 SYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQA 485
YP+ PP + +PN+Y G VCLS+L +++ W P + T+ Q+L+ IQ
Sbjct: 70 DYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQE 121
Query: 486 LILNQKPYFNEPGYAS 501
L+ NEP S
Sbjct: 122 LL-------NEPNIQS 130
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 372 RIQEEWKILENDLPDTIFVRVY----ESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFPS 425
R+ +E K D P FV V + M+L+ I G +GTP+ GLF + F
Sbjct: 11 RLAQERKAWRKDHPFG-FVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKD 69
Query: 426 SYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQA 485
YP+ PP + +PN+Y G VCLS+L +++ W P + T+ Q+L+ IQ
Sbjct: 70 DYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQE 121
Query: 486 LI 487
L+
Sbjct: 122 LL 123
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 20/128 (15%)
Query: 370 AKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
AKRIQ+E + D P + R+ I+G G+ Y G+FF D+ F YP
Sbjct: 50 AKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPF 109
Query: 430 VPPNVYYHSGGLRLNPNLYNC-----GKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQ 484
PP V + + +Y+C G +CL +L + W P + T+ +VL+SI
Sbjct: 110 KPPKVTFRT-------RIYHCNINSQGVICLDIL-------KDNWSPAL-TISKVLLSIC 154
Query: 485 ALILNQKP 492
+L+ + P
Sbjct: 155 SLLTDCNP 162
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 7 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 66
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G + L +L + +W P + T+ +VL+SI +L+ +
Sbjct: 67 PPKVAFTT---RIYHPNINSNGSISLDILRS-------QWSPAL-TISKVLLSICSLLCD 115
Query: 490 QKP 492
P
Sbjct: 116 PNP 118
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E + L +D I ++ + + I G E +PY DG+F +++ P YP
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
P V + + +PN+ G++ L +L T W P + + VL+SIQAL+ +
Sbjct: 66 APKVRFLTKI--YHPNIDRLGRISLDVLKT-------NWSPALQ-IRTVLLSIQALLASP 115
Query: 491 KP 492
P
Sbjct: 116 NP 117
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 20/128 (15%)
Query: 370 AKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
AKRIQ+E + D P + R+ I+G G+ Y G+FF D+ F YP
Sbjct: 5 AKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPF 64
Query: 430 VPPNVYYHSGGLRLNPNLYNC-----GKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQ 484
PP V + + +Y+C G +CL +L + W P + T+ +VL+SI
Sbjct: 65 KPPKVTFRT-------RIYHCNINSQGVICLDIL-------KDNWSPAL-TISKVLLSIC 109
Query: 485 ALILNQKP 492
+L+ + P
Sbjct: 110 SLLTDCNP 117
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G + L +L + +W P + T+ +VL+SI +L+ +
Sbjct: 64 PPKVAFTT---RIYHPNINSNGSISLDILRS-------QWSPAL-TISKVLLSICSLLCD 112
Query: 490 QKP 492
P
Sbjct: 113 PNP 115
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 397 MDLL--RAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVC 454
M+L+ I G +GTP+ GLF + F YP+ PP + +P +Y G VC
Sbjct: 39 MNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPQVYPSGTVC 96
Query: 455 LSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYA 500
LS+L +++ W P + T+ Q+L+ IQ L+ +P +P A
Sbjct: 97 LSIL-----EEDKDWRPAI-TIKQILLGIQELL--NEPNIQDPAQA 134
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G + L +L + +W P + T+ +VL+SI +L+ +
Sbjct: 82 PPKVAFTT---RIYHPNINSNGSIXLDILRS-------QWSPAL-TISKVLLSICSLLCD 130
Query: 490 QKP 492
P
Sbjct: 131 PNP 133
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +PN+ + G + L +L + +W P + T+ +VL+SI +L+ +
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSISLDILRS-------QWSPAL-TISKVLLSICSLLCD 114
Query: 490 QKP 492
P
Sbjct: 115 PNP 117
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 372 RIQEEWKILENDLPDTIFVRVYESR---MDLL--RAVIVGAEGTPYHDGLFFFDVFFPSS 426
R+QEE K D P + + +S +DL+ + I G T + GL+ + FP
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 427 YPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQAL 486
YP PP + +PN+Y G VCLS+L N+ E W P + T+ Q+L+ IQ L
Sbjct: 74 YPTRPPKCRFTPP--LFHPNVYPSGTVCLSIL-----NEEEGWKPAI-TIKQILLGIQDL 125
Query: 487 I 487
+
Sbjct: 126 L 126
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 10/124 (8%)
Query: 371 KRIQEEWKILENDLPDTIFV-RVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
KR+ +E + L D P I E+ + + +I G TPY DG+F + FP YP
Sbjct: 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 430 VPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKN------EKWMPNMSTMLQVLVSI 483
PP + + L+PN+Y G+VC+S+L++ + N E+W P + ++ ++L+S+
Sbjct: 67 SPPKLTFTPS--ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSP-VQSVEKILLSV 123
Query: 484 QALI 487
+++
Sbjct: 124 MSML 127
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 12/124 (9%)
Query: 370 AKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
+KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 2 SKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 430 VPPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALIL 488
PP V + + R+ +PN+ + G + L +L + +W P + + +VL+SI +L+
Sbjct: 62 KPPKVAFTT---RIYHPNINSNGSISLDILRS-------QWSPALK-ISKVLLSICSLLC 110
Query: 489 NQKP 492
+ P
Sbjct: 111 DPNP 114
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 372 RIQEEWKILENDLPDTIFVRVY----ESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFPS 425
R+ +E K D P FV V + M+L+ I G +GTP+ GLF + F
Sbjct: 11 RLAQERKAWRKDHPFG-FVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKD 69
Query: 426 SYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQA 485
YP+ PP + +PN+ G VCLS+L +++ W P + T+ Q+L+ IQ
Sbjct: 70 DYPSSPPKCKFEPP--LFHPNVAPSGTVCLSIL-----EEDKDWRPAI-TIKQILLGIQE 121
Query: 486 LILNQKPYFNEPGYA 500
L+ +P +P A
Sbjct: 122 LL--NEPNIQDPAQA 134
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 22/161 (13%)
Query: 373 IQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPP 432
I+E ++L +P I ES VI G + +P+ G F ++F P YP P
Sbjct: 11 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 69
Query: 433 NVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKP 492
V + + +PN+ G++CL +L +KW P + + VL+SIQAL+ P
Sbjct: 70 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALLSAPNP 119
Query: 493 YFNEPGYASWNNTAHGEVESHKYNESTFILSLK--TMLYTL 531
++P A+ E K NE+ I + + T LY +
Sbjct: 120 --DDP-------LANDVAEQWKTNEAQAIETARAWTRLYAM 151
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 22/161 (13%)
Query: 373 IQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPP 432
I+E ++L +P I ES VI G + +P+ G F ++F P YP P
Sbjct: 9 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 67
Query: 433 NVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKP 492
V + + +PN+ G++CL +L +KW P + + VL+SIQAL+ P
Sbjct: 68 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALLSAPNP 117
Query: 493 YFNEPGYASWNNTAHGEVESHKYNESTFILSLK--TMLYTL 531
++P A+ E K NE+ I + + T LY +
Sbjct: 118 --DDP-------LANDVAEQWKTNEAQAIETARAWTRLYAM 149
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRIQ+E L+ D P + +A I+G + Y G+FF V FP+ YP
Sbjct: 10 KRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
PP + + + +PN+ + G + L +L + +W P + T+ +VL+SI +L+ +
Sbjct: 70 PPKIAFTTK--IYHPNINSNGSIKLDILRS-------QWSPAL-TVSKVLLSICSLLCDP 119
Query: 491 KP 492
P
Sbjct: 120 NP 121
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 22/161 (13%)
Query: 373 IQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPP 432
I+E ++L +P I ES VI G + +P+ G F ++F P YP P
Sbjct: 14 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 72
Query: 433 NVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKP 492
V + + +PN+ G++CL +L +KW P + + VL+SIQAL+ P
Sbjct: 73 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALLSAPNP 122
Query: 493 YFNEPGYASWNNTAHGEVESHKYNESTFILSLK--TMLYTL 531
++P A+ E K NE+ I + + T LY +
Sbjct: 123 --DDP-------LANDVAEQWKTNEAQAIETARAWTRLYAM 154
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 373 IQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPP 432
I+E ++L +P I ES VI G + +P+ G F ++F P YP P
Sbjct: 7 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 65
Query: 433 NVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKP 492
V + + +PN+ G++CL +L +KW P + + VL+SIQAL+ P
Sbjct: 66 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALLSAPNP 115
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 373 IQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPP 432
I+E ++L +P I ES VI G + +P+ G F ++F P YP P
Sbjct: 12 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 70
Query: 433 NVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKP 492
V + + +PN+ G++CL +L +KW P + + VL+SIQAL+ P
Sbjct: 71 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKWSPALQ-IRTVLLSIQALLSAPNP 120
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E + L +D I ++ + + I G E +PY DG+F +++ P YP
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 431 PPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490
P V + + +P + G++ L +L T W P + + VL+SIQAL+ +
Sbjct: 66 APKVRFLTKI--YHPAIDRLGRISLDVLKT-------NWSPALQ-IRTVLLSIQALLASP 115
Query: 491 KP 492
P
Sbjct: 116 NP 117
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 397 MDLL--RAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVC 454
M+L+ I G +GTP+ GLF + F YP+ PP + +PN+Y G V
Sbjct: 36 MNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVS 93
Query: 455 LSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYA-SWNNTAHGEVESH 513
LS+L +++ W P + T+ Q+L+ IQ L+ +P +P A ++ VE
Sbjct: 94 LSIL-----EEDKDWRPAI-TIKQILLGIQELL--NEPNIQDPAQAEAYTIYCQNRVEYE 145
Query: 514 K 514
K
Sbjct: 146 K 146
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNV 430
KRI +E L D P M +A I+G +PY G+FF + FP+ YP
Sbjct: 4 KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 431 PPNVYYHSGGLRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + R+ +P + + G + L +L + +W P + T+ +VL+SI +L+ +
Sbjct: 64 PPKVAFTT---RIYHPAINSNGSISLDILRS-------QWSPAL-TISKVLLSICSLLCD 112
Query: 490 QKP 492
P
Sbjct: 113 PNP 115
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 397 MDLL--RAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVC 454
M+L+ I G +GTP+ GLF + F YP+ PP + +PN+Y G V
Sbjct: 36 MNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVX 93
Query: 455 LSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYA 500
LS+L +++ W P + T+ Q+L+ IQ L+ +P +P A
Sbjct: 94 LSIL-----EEDKDWRPAI-TIKQILLGIQELL--NEPNIQDPAQA 131
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 373 IQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPP 432
+ +E L D PD I V E + L+ I G EGTPY GLF + +P PP
Sbjct: 18 VYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPP 77
Query: 433 NVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKP 492
Y+ + +PN+ G++C+++L W + + VL++I+ L+++ P
Sbjct: 78 KGYFLTK--IFHPNVGANGEICVNVL-------KRDWTAELG-IRHVLLTIKCLLIHPNP 127
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
KR+ E+K L + P+ I + E A+I+G E T + G+F + FP YP
Sbjct: 10 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 69
Query: 430 VPPNVYYHSGGLRLNPNLYNCGKVCLSLLNT------WTGNKNEKWMPNMSTMLQVLVSI 483
PP + + +PN+Y G+VC+S+L+ + E+W P + ++ ++L+S+
Sbjct: 70 SPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP-VQSVEKILLSV 126
Query: 484 QALI 487
+++
Sbjct: 127 VSML 130
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
KR+ E+K L + P+ I + E A+I+G E T + G+F + FP YP
Sbjct: 12 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 71
Query: 430 VPPNVYYHSGGLRLNPNLYNCGKVCLSLLNT------WTGNKNEKWMPNMSTMLQVLVSI 483
PP + + +PN+Y G+VC+S+L+ + E+W P + ++ ++L+S+
Sbjct: 72 SPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP-VQSVEKILLSV 128
Query: 484 QALI 487
+++
Sbjct: 129 VSML 132
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
KR+ E+K L + P+ I + E A+I+G E T + G+F + FP YP
Sbjct: 9 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 68
Query: 430 VPPNVYYHSGGLRLNPNLYNCGKVCLSLLNT------WTGNKNEKWMPNMSTMLQVLVSI 483
PP + + +PN+Y G+VC+S+L+ + E+W P + ++ ++L+S+
Sbjct: 69 SPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP-VQSVEKILLSV 125
Query: 484 QALI 487
+++
Sbjct: 126 VSML 129
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
KR+ E+K L + P+ I + E A+I+G E T + G+F + FP YP
Sbjct: 6 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65
Query: 430 VPPNVYYHSGGLRLNPNLYNCGKVCLSLLNT------WTGNKNEKWMPNMSTMLQVLVSI 483
PP + + +PN+Y G+VC+S+L+ + E+W P + ++ ++L+S+
Sbjct: 66 SPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP-VQSVEKILLSV 122
Query: 484 QALI 487
+++
Sbjct: 123 VSML 126
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 401 RAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYN-CGKVCLSLLN 459
R I G GTPY G F D+ P YP PP + + + +PN+ + G +CL +L
Sbjct: 78 RGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTK--IWHPNISSQTGAICLDIL- 134
Query: 460 TWTGNKNEKWMPNMSTMLQVLVSIQALILNQKP 492
+W P + T+ L+SIQA++ + P
Sbjct: 135 ------KHEWSPAL-TIRTALLSIQAMLADPVP 160
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVI--VGAEGTPYHDGLFFFDVFFPSSYP 428
KR+Q+E L+ND P + + + + + ++ GA GT Y F F S YP
Sbjct: 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84
Query: 429 NVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALI 487
P V + + ++P++Y+ G +CLS+L E W P +S V +SI +++
Sbjct: 85 FDSPQVMFTGENIPVHPHVYSNGHICLSIL-------TEDWSPALSVQ-SVCLSIISML 135
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 402 AVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLL--- 458
+++G T Y G F + FP YP PP + + S +PN+ G VC+S+L
Sbjct: 38 VLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISE--IWHPNIDKEGNVCISILHDP 95
Query: 459 --NTWTGNK-NEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKY 515
+ W + E+W+P + T+ +L+S+ +++ +P + S N +++ Y
Sbjct: 96 GDDKWGYERPEERWLP-VHTVETILLSVISML-------TDPNFESPANVDAAKMQRENY 147
Query: 516 NE 517
E
Sbjct: 148 AE 149
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 357 ASKASLKQPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGL 416
+S +S + PT +R+++++ ++ D I S + V+ G E TPY G
Sbjct: 4 SSTSSKRAPTTA-TQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY 62
Query: 417 FFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTM 476
+ + FP +P PP++Y + R N ++CLS+ + N W ++ST+
Sbjct: 63 YHGKLIFPREFPFKPPSIYMITPNGRFKCN----TRLCLSITDFHPDTWNPAW--SVSTI 116
Query: 477 LQVLVSIQA 485
L L+S
Sbjct: 117 LTGLLSFMV 125
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 390 VRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYN 449
++V E+ + + +IV + PY G F ++ FP+ YP PP + + + +PN+
Sbjct: 25 IQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTK--IYHPNIDE 81
Query: 450 CGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKP 492
G+VCL +++ E W P T QV+ S+ AL+ + +P
Sbjct: 82 KGQVCLPVISA------ENWKPATKTD-QVIQSLIALVNDPQP 117
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 390 VRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYN 449
++V E+ + + +IV + PY G F ++ FP+ YP PP + + + +PN+
Sbjct: 27 IQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTK--IYHPNIDE 83
Query: 450 CGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKP 492
G+VCL +++ E W P T QV+ S+ AL+ + +P
Sbjct: 84 KGQVCLPVISA------ENWKPATKTD-QVIQSLIALVNDPQP 119
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 372 RIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVP 431
RIQ+E N+ P + V+ + + + VG E T Y + ++ + FP YP P
Sbjct: 10 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 69
Query: 432 PNVYYHSGGLRLNPNLYNCGKVCLSLL 458
P VY+ + + ++Y+ G +CLSLL
Sbjct: 70 PIVYFLQKPPK-HTHVYSNGDICLSLL 95
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 372 RIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVP 431
RIQ+E + P + V+ S + + VG E T Y + ++ + FP +YP P
Sbjct: 24 RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP 83
Query: 432 PNVYYHSGGLRLNPNLYNCGKVCLSLL 458
P VY+ + + ++Y+ G +CLS+L
Sbjct: 84 PIVYFLQKPPK-HTHVYSNGDICLSVL 109
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 398 DLLR--AVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVCL 455
DL R +I+G T Y G+F + FP YP PP + + + +PN+ G VC+
Sbjct: 46 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE--IWHPNVDKNGDVCI 103
Query: 456 SLLNTWTGNK------NEKWMPNMSTMLQVLVSIQALI 487
S+L+ +K E+W+P + T+ +++S+ +++
Sbjct: 104 SILHEPGEDKYGYEKPEERWLP-IHTVETIMISVISML 140
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 406 GAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNL-YNCGKVCLSLLN-TWT 462
G EGTPY DG + V PS YP P++ + L+PN+ G VCL ++N TWT
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGF--CNRILHPNVDERSGSVCLDVINQTWT 102
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 367 NKWAKRIQEEWKIL---ENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFF 423
N +RI+ E+K + E + I V + + LR I G TPY G + ++
Sbjct: 56 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 115
Query: 424 PSSYPNVPPNVYYHSGGLRLNPNLYNC-GKVCLSLL-NTWTG 463
P +YP PP V + + +PN+ + G +CL +L + W
Sbjct: 116 PETYPFNPPKVRFITK--IWHPNISSVTGAICLDILKDQWAA 155
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 394 ESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNC--- 450
E+ + A+I G TPY + F + PSSYP PP + + + N+ +C
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISF------MQNNILHCNVK 97
Query: 451 ---GKVCLSLLNTWTGNKNEKWMP 471
G++CL++L K E+W P
Sbjct: 98 SATGEICLNIL------KPEEWTP 115
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 371 KRIQEEWKIL---ENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSY 427
+RI+ E+K + E + I V + + LR I G TPY G + ++ P +Y
Sbjct: 24 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 83
Query: 428 PNVPPNVYYHSGGLRLNPNLYNC-GKVCLSLL 458
P PP V + + +PN+ + G +CL +L
Sbjct: 84 PFNPPKVRFITK--IWHPNISSVTGAICLDIL 113
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 394 ESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNC--- 450
E+ + A+I G TPY + F + PSSYP PP + + + N+ +C
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISF------MQNNILHCNVK 97
Query: 451 ---GKVCLSLLNTWTGNKNEKWMP 471
G++CL++L K E+W P
Sbjct: 98 SATGEICLNIL------KPEEWTP 115
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 371 KRIQEEWKIL---ENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSY 427
+RI+ E+K + E + I V + + LR I G TPY G + ++ P +Y
Sbjct: 9 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 68
Query: 428 PNVPPNVYYHSGGLRLNPNLYNC-GKVCLSLL 458
P PP V + + +PN+ + G +CL +L
Sbjct: 69 PFNPPKVRFITK--IWHPNISSVTGAICLDIL 98
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 371 KRIQEEWKIL---ENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSY 427
+RI+ E+K + E + I V + + LR I G TPY G + ++ P +Y
Sbjct: 8 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 67
Query: 428 PNVPPNVYYHSGGLRLNPNLYNC-GKVCLSLL 458
P PP V + + +PN+ + G +CL +L
Sbjct: 68 PFNPPKVRFITK--IWHPNISSVTGAICLDIL 97
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 394 ESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNC-GK 452
E+ + A+I G TPY + F + PSSYP PP + + + L+ N+ + G+
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNI-LHSNVKSATGE 102
Query: 453 VCLSLLNTWTGNKNEKWMP 471
+CL++L K E+W P
Sbjct: 103 ICLNIL------KPEEWTP 115
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 402 AVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTW 461
I G T Y G F + FP YP PP + + +PN+Y G VC+S+L+
Sbjct: 39 VAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK--MWHPNIYETGDVCISILHPP 96
Query: 462 TGN------KNEKWMP--NMSTMLQVLVSI 483
+ +E+W P N+ T+L ++S+
Sbjct: 97 VDDPQSGELPSERWNPTQNVRTILLSVISL 126
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 404 IVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTG 463
++ + PYH F + FP YP PP + + + +PN+ G++CL ++++
Sbjct: 40 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKI--YHPNVDENGQICLPIISS--- 94
Query: 464 NKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFIL 522
E W P T QVL ++ L+ +P EP + E + N F L
Sbjct: 95 ---ENWKPCTKTC-QVLEALNVLV--NRPNIREPLRMDLADLLTQNPELFRKNAEEFTL 147
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 404 IVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTG 463
++ + PYH F + FP YP PP + + + +PN+ G++CL ++++
Sbjct: 37 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKI--YHPNVDENGQICLPIISS--- 91
Query: 464 NKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFIL 522
E W P T QVL ++ L+ +P EP + E + N F L
Sbjct: 92 ---ENWKPCTKTC-QVLEALNVLV--NRPNIREPLRMDLADLLTQNPELFRKNAEEFTL 144
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 402 AVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTW 461
I G T Y G F + FP YP PP + + +PN+Y G VC+S+L+
Sbjct: 42 VAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK--MWHPNIYETGDVCISILHPP 99
Query: 462 TGN------KNEKWMP--NMSTMLQVLVSI 483
+ +E+W P N+ T+L ++S+
Sbjct: 100 VDDPQSGELPSERWNPTQNVRTILLSVISL 129
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 367 NKWAKRIQEEWKIL---ENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFF 423
N +RI+ E+K + E + I V + + LR I G TPY G + ++
Sbjct: 7 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 66
Query: 424 PSSYPNVPPNVYYHSGGLRLNPNLYNC-GKVCLSLL 458
P +YP PP V + + +PN+ + G +CL +L
Sbjct: 67 PETYPFNPPKVRFITK--IWHPNISSVTGAICLDIL 100
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)
Query: 402 AVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLL-NT 460
A + G + T Y + + FPS YP PP V + + +PN+ G +CL +L
Sbjct: 43 ATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC--WHPNVDQSGNICLDILKEN 100
Query: 461 WTGNKNEKWMPNMSTMLQVLVSIQALI--LNQKPYFNEPGYASWNN-TAHGEVESHKY 515
WT + + + +L+S+Q+L+ N N W+N T + +V KY
Sbjct: 101 WTASYDVR---------TILLSLQSLLGEPNNASPLNAQAADMWSNQTEYKKVLHEKY 149
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 370 AKRIQEEWKILENDLPDTIFVRVYESRMDLLRAV--IVGAEGTPYHDGLFFFDVFFPSSY 427
KR+Q+E L + + + +L + V I GA GT Y D + + FPS Y
Sbjct: 32 GKRLQQELMTLM--MSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 89
Query: 428 PNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALI 487
P P V + + +PN+ G + L +L EKW + + +L+SIQ+L+
Sbjct: 90 PYNAPTVKFLTPC--YHPNVDTQGNISLDIL-------KEKW-SALYDVRTILLSIQSLL 139
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 17/103 (16%)
Query: 386 DTIFVRVYESRMDL-----LRAVIV---GAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYH 437
DT +++ ES+ ++ L +V G +GTPY G++ V P YP P++ +
Sbjct: 31 DTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFM 90
Query: 438 SGGLRLNPNLYNC-GKVCLSLLN-TWTG-----NKNEKWMPNM 473
+ +PN+ G VCL ++N TWT N E ++P +
Sbjct: 91 NK--IFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQL 131
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYE-SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
K + +E LE +LP T V + +++ + + EG Y G F F+ P +Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGY-YQGGKFQFETEVPDAYNM 75
Query: 430 VPPNVYYHSGGLRLNPNLYNCGKVCLSLL 458
VPP V + +PN+ G++CLSLL
Sbjct: 76 VPPKVKCLTK--IWHPNITETGEICLSLL 102
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 371 KRIQEEWKILENDLPDTIFVRVYE-SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
K + +E LE +LP T V + +++ + + EG Y G F F+ P +Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGY-YQGGKFQFETEVPDAYNM 75
Query: 430 VPPNVYYHSGGLRLNPNLYNCGKVCLSLL 458
VPP V + +PN+ G++CLSLL
Sbjct: 76 VPPKVKCLTK--IWHPNITETGEICLSLL 102
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 56/128 (43%), Gaps = 26/128 (20%)
Query: 372 RIQEEWKILENDLPDTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
RIQ++ I E +LP T + + DLL + VI EG Y G F F YP+
Sbjct: 10 RIQKD--INELNLPKTCDIS-FSDPDDLLNFKLVICPDEGF-YKSGKFVFSFKVGQGYPH 65
Query: 430 VPPNV-----YYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQ 484
PP V YH PN+ G VCL++L E W P + T+ ++ +Q
Sbjct: 66 DPPKVKCETXVYH-------PNIDLEGNVCLNIL-------REDWKPVL-TINSIIYGLQ 110
Query: 485 ALILNQKP 492
L L P
Sbjct: 111 YLFLEPNP 118
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 406 GAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNC-GKVCLSLLN-TWT- 462
G GT Y G++ V P YP P++ + + L+PN+ G VCL ++N TWT
Sbjct: 37 GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNK--LLHPNVDEASGSVCLDVINQTWTP 94
Query: 463 ----GNKNEKWMPNMST 475
N E ++P + T
Sbjct: 95 LYSLVNVFEVFLPQLLT 111
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 364 QPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRA------VIVGAEGTPYHDGLF 417
QP N A RI+ + + DLP T+ + V S R+ VIV + Y+ G
Sbjct: 24 QP-NLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSI 82
Query: 418 FFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTML 477
F++ F YP PP V +PN+ G VCL++L E W P + L
Sbjct: 83 NFNLDFNEVYPIEPPKVVCLKK--IFHPNIDLKGNVCLNIL-------REDWSPALD--L 131
Query: 478 QVLVSIQALILNQKPYFNEP 497
Q +++ L L +P N+P
Sbjct: 132 QSIIT-GLLFLFLEPNPNDP 150
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 372 RIQEEWKILENDLPDTIFVRVYESRMDLL--RAVIVGAEGTPYHDGLFFFDVFFPSSYPN 429
RIQ++ I E +LP T + + DLL + VI EG Y G F F YP+
Sbjct: 30 RIQKD--INELNLPKTCDIS-FSDPDDLLNFKLVICPDEGF-YKSGKFVFSFKVGQGYPH 85
Query: 430 VPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489
PP V + + +PN+ G V L++L E W P + T+ ++ +Q L L
Sbjct: 86 DPPKVKCET--MVYHPNIDLEGNVALNIL-------REDWKPVL-TINSIIYGLQYLFLE 135
Query: 490 QKP 492
P
Sbjct: 136 PNP 138
>pdb|3FFE|A Chain A, Structure Of Achromobactin Synthetase Protein D, (Acsd)
pdb|3FFE|B Chain B, Structure Of Achromobactin Synthetase Protein D, (Acsd)
Length = 653
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 496 EPGYASWNNTAHGEVESHKYNEST 519
EPG SW+ A GE++SH + E T
Sbjct: 374 EPGVVSWSPAAAGELDSHWFREQT 397
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 404 IVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVC---LSLLNT 460
I G GT + + ++ +F +YP+ PP V + + + ++ + NCG+V L +L
Sbjct: 65 IFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT-KIEMS-CVDNCGRVIKNNLHILKN 122
Query: 461 WTGN 464
W N
Sbjct: 123 WNRN 126
>pdb|2W02|A Chain A, Co-Complex Structure Of Achromobactin Synthetase Protein D
( Acsd) With Atp From Pectobacterium Chrysanthemi
pdb|2W02|B Chain B, Co-Complex Structure Of Achromobactin Synthetase Protein D
( Acsd) With Atp From Pectobacterium Chrysanthemi
pdb|2W03|A Chain A, Co-Complex Structure Of Achromobactin Synthetase Protein D
( Acsd) With Adenosine, Sulfate And Citrate From
Pectobacterium Chrysanthemi
pdb|2W03|B Chain B, Co-Complex Structure Of Achromobactin Synthetase Protein D
( Acsd) With Adenosine, Sulfate And Citrate From
Pectobacterium Chrysanthemi
pdb|2W04|A Chain A, Co-Complex Structure Of Achromobactin Synthetase Protein D
( Acsd) With Citrate In Atp Binding Site From
Pectobacterium Chrysanthemi
pdb|2W04|B Chain B, Co-Complex Structure Of Achromobactin Synthetase Protein D
( Acsd) With Citrate In Atp Binding Site From
Pectobacterium Chrysanthemi
pdb|2X3K|A Chain A, Co-Complex Structure Of Achromobactin Synthetase Protein D
( Acsd) With Amp And Sulfate From Pectobacterium
Chrysanthemi
pdb|2X3K|B Chain B, Co-Complex Structure Of Achromobactin Synthetase Protein D
( Acsd) With Amp And Sulfate From Pectobacterium
Chrysanthemi
pdb|2X3J|A Chain A, Co-Complex Structure Of Achromobactin Synthetase Protein D
(Acsd) With Atp And N-Citryl-Ethylenediamine From
Pectobacterium Chrysanthemi
pdb|2X3J|B Chain B, Co-Complex Structure Of Achromobactin Synthetase Protein D
(Acsd) With Atp And N-Citryl-Ethylenediamine From
Pectobacterium Chrysanthemi
Length = 620
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 496 EPGYASWNNTAHGEVESHKYNEST 519
EPG SW+ A GE++SH + E T
Sbjct: 341 EPGVVSWSPAAAGELDSHWFREQT 364
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 404 IVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVC---LSLLNT 460
I G GT + + ++ +F +YP+ PP V + + + ++ + NCG+V L +L
Sbjct: 61 IFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT-KIEMS-CVDNCGRVIKNNLHILKN 118
Query: 461 WTGN 464
W N
Sbjct: 119 WNRN 122
>pdb|1X3K|A Chain A, Crystal Structure Of A Hemoglobin Component (Ta-V) From
Tokunagayusurika Akamusi
pdb|2ZWJ|A Chain A, Crystal Structure Of A Hemoglobin Component V From
Propsilocerus Akamusi (Ph4.6 Coordinates)
pdb|3A5A|A Chain A, Crystal Structure Of A Hemoglobin Component V From
Propsilocerus Akamusi (Ph5.6 Coordinates)
pdb|3A5B|A Chain A, Crystal Structure Of A Hemoglobin Component V From
Propsilocerus Akamusi (Ph6.5 Coordinates)
pdb|3A5G|A Chain A, Crystal Structure Of A Hemoglobin Component V From
Propsilocerus Akamusi (Ph7.0 Coordinates)
pdb|3A9M|A Chain A, Crystal Structure Of A Hemoglobin Component V From
Propsilocerus Akamusi (Ph9.0 Coordinates)
pdb|3ARJ|A Chain A, Cl- Binding Hemoglobin Component V Form Propsilocerus
Akamusi Under 500 Mm Nacl At Ph 4.6
pdb|3ARK|A Chain A, Cl- Binding Hemoglobin Component V Form Propsilocerus
Akamusi Under 1 M Nacl At Ph 4.6
pdb|3ARL|A Chain A, Cl- Binding Hemoglobin Component V Form Propsilocerus
Akamusi Under 500 Mm Nacl At Ph 5.5
Length = 152
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 278 AW---HGSLQAELNSTFANYT-THPSFYDPFDTVHMSP-EEPADTPS 319
AW HG LQ N+ F NY +PS D F+T+ P +E DT +
Sbjct: 16 AWAPIHGDLQGTANTVFYNYLKKYPSNQDKFETLKGHPLDEVKDTAN 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,020,420
Number of Sequences: 62578
Number of extensions: 1000562
Number of successful extensions: 2275
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2148
Number of HSP's gapped (non-prelim): 118
length of query: 639
length of database: 14,973,337
effective HSP length: 105
effective length of query: 534
effective length of database: 8,402,647
effective search space: 4487013498
effective search space used: 4487013498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)