Query 042246
Match_columns 639
No_of_seqs 336 out of 1670
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:20:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0895 Ubiquitin-conjugating 100.0 3E-55 6.5E-60 498.1 13.1 270 343-614 826-1095(1101)
2 KOG0895 Ubiquitin-conjugating 100.0 3E-48 6.6E-53 441.2 30.1 501 1-609 1-525 (1101)
3 KOG0417 Ubiquitin-protein liga 100.0 1.7E-37 3.8E-42 291.0 14.0 138 369-525 2-139 (148)
4 COG5078 Ubiquitin-protein liga 100.0 7.4E-37 1.6E-41 290.2 15.5 120 368-499 5-125 (153)
5 PTZ00390 ubiquitin-conjugating 100.0 8.7E-35 1.9E-39 275.3 15.3 140 369-545 3-142 (152)
6 PLN00172 ubiquitin conjugating 100.0 3.9E-34 8.4E-39 269.2 15.2 142 369-547 2-143 (147)
7 KOG0419 Ubiquitin-protein liga 100.0 1.1E-33 2.3E-38 260.6 12.7 119 368-498 4-122 (152)
8 KOG0418 Ubiquitin-protein liga 100.0 1.1E-32 2.4E-37 266.4 14.2 148 369-535 4-157 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 6.1E-31 1.3E-35 242.6 13.9 116 372-498 1-117 (140)
10 KOG0425 Ubiquitin-protein liga 100.0 3.7E-30 8E-35 243.0 15.4 155 368-552 5-166 (171)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 6.4E-30 1.4E-34 236.4 14.0 139 371-545 2-140 (141)
12 KOG0426 Ubiquitin-protein liga 100.0 2.8E-29 6.2E-34 231.5 13.3 123 367-492 3-132 (165)
13 smart00212 UBCc Ubiquitin-conj 100.0 6.4E-29 1.4E-33 230.8 13.8 117 371-498 1-118 (145)
14 KOG0424 Ubiquitin-protein liga 100.0 6.6E-29 1.4E-33 231.7 13.7 147 367-548 3-154 (158)
15 KOG0421 Ubiquitin-protein liga 100.0 2.1E-28 4.5E-33 228.5 10.9 145 366-548 27-171 (175)
16 KOG0894 Ubiquitin-protein liga 99.9 2.7E-26 5.9E-31 226.0 17.2 166 365-556 2-167 (244)
17 KOG0422 Ubiquitin-protein liga 99.9 5.1E-26 1.1E-30 211.6 12.6 119 368-498 2-121 (153)
18 KOG0416 Ubiquitin-protein liga 99.9 1.9E-24 4.1E-29 206.8 10.6 143 370-552 5-149 (189)
19 KOG0423 Ubiquitin-protein liga 99.9 1.6E-24 3.5E-29 207.6 6.5 158 364-540 6-163 (223)
20 KOG0427 Ubiquitin conjugating 99.9 3.1E-23 6.7E-28 191.6 11.8 116 365-490 12-127 (161)
21 KOG0420 Ubiquitin-protein liga 99.9 3.6E-23 7.7E-28 198.3 10.1 139 365-543 25-167 (184)
22 KOG0428 Non-canonical ubiquiti 99.8 1.7E-19 3.6E-24 181.1 11.4 135 366-525 9-143 (314)
23 KOG0429 Ubiquitin-conjugating 99.5 2.5E-13 5.4E-18 135.4 11.4 152 370-556 21-175 (258)
24 KOG0896 Ubiquitin-conjugating 98.6 8.6E-08 1.9E-12 90.0 7.4 110 371-488 8-122 (138)
25 KOG0897 Predicted ubiquitin-co 98.0 1.2E-05 2.6E-10 74.1 6.4 65 417-489 13-77 (122)
26 PF14461 Prok-E2_B: Prokaryoti 97.7 7.3E-05 1.6E-09 69.8 6.6 68 413-488 34-105 (133)
27 PF05743 UEV: UEV domain; Int 97.5 0.00039 8.3E-09 64.6 7.8 71 411-489 42-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 96.9 0.0009 1.9E-08 64.2 3.8 86 367-459 23-118 (161)
29 KOG2391 Vacuolar sorting prote 96.3 0.011 2.4E-07 63.6 7.6 82 406-495 57-143 (365)
30 PF14462 Prok-E2_E: Prokaryoti 94.9 0.19 4.1E-06 47.4 9.4 97 386-488 12-120 (122)
31 KOG3357 Uncharacterized conser 94.4 0.045 9.7E-07 52.2 4.0 85 366-457 25-119 (167)
32 PF05773 RWD: RWD domain; Int 91.6 0.5 1.1E-05 41.3 6.1 68 371-439 4-73 (113)
33 smart00591 RWD domain in RING 89.0 3.5 7.6E-05 35.8 9.2 27 413-439 39-65 (107)
34 PF09288 UBA_3: Fungal ubiquit 69.3 1.3 2.8E-05 36.7 -0.5 26 591-617 4-29 (55)
35 PF14457 Prok-E2_A: Prokaryoti 65.6 9.1 0.0002 37.7 4.5 64 419-489 57-126 (162)
36 PF09765 WD-3: WD-repeat regio 45.4 38 0.00082 36.4 5.4 91 367-489 98-188 (291)
37 KOG1047 Bifunctional leukotrie 27.7 42 0.00091 39.3 2.5 52 411-464 249-303 (613)
38 PF06113 BRE: Brain and reprod 25.3 1.5E+02 0.0034 32.7 6.1 44 397-447 53-96 (333)
39 PF06152 Phage_min_cap2: Phage 20.1 4.2E+02 0.0092 29.3 8.3 53 407-474 237-292 (361)
No 1
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-55 Score=498.14 Aligned_cols=270 Identities=50% Similarity=0.846 Sum_probs=255.3
Q ss_pred cccccccCCcccccccccccCCCCHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEE
Q 042246 343 KKFDAVEDHLDHHYASKASLKQPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVF 422 (639)
Q Consensus 343 k~fd~ve~~sdHhy~~~ss~~~~s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~ 422 (639)
++||++.+..||||...-..+.....+++..+.||+.|..++|.||+||.+|++|++++++|+||.||||++|+|+|+|.
T Consensus 826 ~~F~v~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~ 905 (1101)
T KOG0895|consen 826 LRFDVNYDYMDHHKNANDGNKAAEAQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQ 905 (1101)
T ss_pred ccccccCchHHHhhhhcccccHHHHHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEee
Confidence 68999999999999987322233348999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCeeeeccCCcccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccc
Q 042246 423 FPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASW 502 (639)
Q Consensus 423 FP~dYP~~PPkV~F~T~~~IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l 502 (639)
||++||..||.|++++.+.|+|||+|++|+|||+||+||.|+++|.|+|. ++|+|||+|||+|+++.+||||||||+.+
T Consensus 906 ~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~-s~~lq~l~s~q~l~l~~~py~ne~gy~~~ 984 (1101)
T KOG0895|consen 906 FPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPS-SSILQVLVSIQGLVLNEEPYFNEAGYEKQ 984 (1101)
T ss_pred cCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcc-hhHHHHHHHhhhhhcccccccCccccccc
Confidence 99999999999999999999999999999999999999999999999995 79999999999999999999999999999
Q ss_pred cCCcchhhhhhhccHHHHHHHHHHHHHHhcCCChhhHHHHHHHHhhcHHHHHHHHHHhhccCCccccccCCcccccCCCC
Q 042246 503 NNTAHGEVESHKYNESTFILSLKTMLYTLRRPPKHFKDFVIGHFYKHAHDILAACKTYMSGAEVGSLVKGGVQNIHKGLD 582 (639)
Q Consensus 503 ~~ta~ge~~s~~Yne~~f~~s~ktm~~~L~kpPk~Fe~~V~~HF~~~a~~Il~~~k~~~~ga~vg~~~~g~~~~~~~~~~ 582 (639)
+|+++|+.+++.||+++|+++|++|+++|++||+.|+++|++||++|+.+|+++|++|++|.+.|+..++.+++......
T Consensus 985 ~g~~~g~~~s~~y~~~~~~~~~~~~~~~~~~p~~~~~e~i~~Hf~~~~~ei~~~c~a~~~~~~~~s~~k~~v~d~~~a~k 1064 (1101)
T KOG0895|consen 985 RGTAEGEKNSRVYNENAFLLTCKSMVYQLRKPPKCFEEVIHKHFYLRGVEIMAACEAWIAGILQGSSDKRVVSDHAAALK 1064 (1101)
T ss_pred ccccccccccccccchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccccchhhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888777777
Q ss_pred CCChHHHHHHHHhHHHHHHHHHhcCccccccc
Q 042246 583 GCTPHFRTSVAGQVDLLVKEFIRIGVKDCEKF 614 (639)
Q Consensus 583 ~~s~~Fk~~l~~~~~~Lv~~F~~~G~~d~~~~ 614 (639)
+.+++||..|..+...+..+|...|+ +|..+
T Consensus 1065 s~s~~~k~~l~~~~~~~~~~~~~~~a-~~~~~ 1095 (1101)
T KOG0895|consen 1065 SHSAQFKEELLKLPCPEGLAPDTVGA-PEVCE 1095 (1101)
T ss_pred ccchhhhhhhhhCCcccccchhhcCc-hhhhh
Confidence 88999999999999999999999999 44443
No 2
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-48 Score=441.21 Aligned_cols=501 Identities=35% Similarity=0.503 Sum_probs=376.2
Q ss_pred CCCCeeecCCCC--CCCccccc----ccceeeccCCCCCCCeEEecccccccCCCcccccCCCCCCCcccCCCCCCCCCC
Q 042246 1 MDPEVIEIPPPV--FQAPRRRN----RKQVIDLEKDEDSSDVILLDEIVKAGRKGKAIKNDSDGSVSYQPKEDSKSSVPG 74 (639)
Q Consensus 1 mdp~vvei~pp~--~~~~~~~~----~~~vid~d~d~~~~~~~~~~~~~~~~nkgk~i~~~~~~~~~~~~~~~~~~~~~~ 74 (639)
|+++|++|.+|. +.++|-|+ ..+|||.+...-...++..++.+++++||++|+.++++++| .++.+.
T Consensus 1 mE~~~~~~~~~~~~~~~srv~s~~~~s~~vvd~e~~~i~~~giv~~n~~Dtks~g~~~dVds~S~~d-------qss~~~ 73 (1101)
T KOG0895|consen 1 MEHFVVNINTSPSLAVDSRVRSPVDESPEVVDSEYFLIRRMGIVFKNVDDTKSKGEESDVDSDSKND-------QSSEPH 73 (1101)
T ss_pred CCcccccCCCCCccccCCccCChhhcCceeeccCcceeeecccccccccccccccceeecccccccc-------cCcccc
Confidence 899999999984 66677553 24499999886655444467778999999999999999997 455666
Q ss_pred Ccccccccc---cCCCCCCcc--cc---CCcc-hhhHHHhhhcCCCCCCCcccccccccCCCcccccccCCCC----ccc
Q 042246 75 SHSIINLDF---YDDKHVNID--DF---IDVE-DYTFVQAYFDNANIPAGVEAPVPWLADPSLRKEKTANGSN----LVH 141 (639)
Q Consensus 75 ~~~~~~~d~---ydd~~~~~~--d~---~d~d-~y~~~q~~fd~~~ip~gve~p~~w~~~~~~~~~~~~~~~~----~~~ 141 (639)
...+.+.|. |+|++.+.+ |+ +|++ +|.|.|+.+|.+.+|.||+.-|+|..++. ++.++++.. +|.
T Consensus 74 ~e~l~~~d~~~~~~d~env~e~~~a~~~~dV~~~~~~~qd~~d~~~~~~~v~~~v~W~~ns~--si~~~~~l~sser~~i 151 (1101)
T KOG0895|consen 74 DESLDPGDPSLLRRDDENVCEVEDANQSIDVDQDYEMYQDLNDMKETPTGVPVSVRWTDNSN--SIETANSLKSSERLWI 151 (1101)
T ss_pred hhhccCCcchhcccCcccchhhhccccccccccccchhhhhcccccccccCceeeecccccc--chhhhccccccccccc
Confidence 667776666 777754443 33 8999 99999999999999999999999999997 888887773 222
Q ss_pred cCCC--CCCCCcccccccCCCcchhhhcccccccccccccCCCCCCCCcccccCCCcccccccccCCCCccccccccccc
Q 042246 142 VNPA--SKSSSSLQKKVDVPSSWLHLQSAHSKNTAASQDVGSSAQNGPFHVKSSNPLWIHEKSKSNGKLSASGISTNTNY 219 (639)
Q Consensus 142 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (639)
...- +.+.... ...+++.|..+- ..+.+ |.++..-+.
T Consensus 152 ~~~~~~~~seats--~t~vvq~~~~~~-------------------it~dl----------~~k~~a~y~---------- 190 (1101)
T KOG0895|consen 152 ALLYLGKASEATS--STNVVQGANAGP-------------------ITVDL----------PQKSIAIYK---------- 190 (1101)
T ss_pred ccccccccccccC--ccceeecccccc-------------------ccccc----------ccccccccc----------
Confidence 1111 1111111 345566665300 11112 444433110
Q ss_pred cCCCCCCCCCCCCCCcccccccccccccccCCccccccCCCcccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCC
Q 042246 220 VNQFDPMVHPPGVGPSLWTHGTLAPVQNQVGSSNLFYSGMPALKDTVNYPPAVGSFMPAWHGSLQAELNSTFANYTTHPS 299 (639)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (639)
..-|..-.+|++++ +..++.+. |+ + +-..|..+ .
T Consensus 191 ~~~fst~~l~~t~d------~~sg~~~~----------------------P~-~-~~~~~i~s----------------r 224 (1101)
T KOG0895|consen 191 KVLFSTQNLPPTPD------TVSGTIRR----------------------PF-P-PNYPGIHS----------------R 224 (1101)
T ss_pred cchhhcccCCCCCC------ccccccCC----------------------CC-C-Ccccchhc----------------c
Confidence 01122244566666 22222222 22 1 11123322 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCCCccccchHHHHHHhhhhcccccccCCcccccccc-cccCCCCHHHHHHHHHHHH
Q 042246 300 FYDPFDTVHMSPEEPADTPSGQDFSDNKESLDEDDILRKFDLFKKFDAVEDHLDHHYASK-ASLKQPTNKWAKRIQEEWK 378 (639)
Q Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~k~~~fk~fd~ve~~sdHhy~~~-ss~~~~s~~a~KRL~KELk 378 (639)
+|...+.-. +---..+|+|.....-+- ...+..|+.+++...|||+.+ .+....+..+.+|+++|++
T Consensus 225 ~~~v~e~~~---~lv~d~~~~k~~~~~plr---------l~~i~kf~~~ed~~~~~~~~k~~~~k~hs~~~skrv~ke~~ 292 (1101)
T KOG0895|consen 225 SHVVKDEPY---ELVPDFSMLKVETEEPLR---------LDLIPKFKLVEDKSFHHYAKKGKSSKPHSKNWSKKVAKELK 292 (1101)
T ss_pred ccccccccc---cccccccccccccccCcc---------ccchhhhccccccccccccccCCCCCccchhhHHHHHHHhh
Confidence 111111100 000001112211111111 116888999999999999988 6667888999999999999
Q ss_pred HHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccC-CcccCCCccCCCceeecC
Q 042246 379 ILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSG-GLRLNPNLYNCGKVCLSL 457 (639)
Q Consensus 379 ~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~-~~IfHPNVy~~GkVCLSL 457 (639)
.|.+++|+||+|++.+.+|+..+++|.||.||||++|+|.|+|.||..||..||.|+++|. .++++||+|.+|+|||++
T Consensus 293 llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLsl 372 (1101)
T KOG0895|consen 293 LLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSL 372 (1101)
T ss_pred hhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeee
Confidence 9999999999999999999999999999999999999999999999999999999999997 789999999999999999
Q ss_pred ccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHHHHHHHhcCCChh
Q 042246 458 LNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLKTMLYTLRRPPKH 537 (639)
Q Consensus 458 L~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~ktm~~~L~kpPk~ 537 (639)
|+||.|...+.|+|..++|.|+|++||.|+++..|||++|++....+.+.+...+..|+++++++.+..|.+.+++||+.
T Consensus 373 LgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~Py~ne~ga~~~~~~a~~~qvs~cv~~~aii~vl~~~~~~Irrpp~~ 452 (1101)
T KOG0895|consen 373 LGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEPYFNEPGALQKRTSADPYQVSKCVSEEAIIEVLPMMVYEIRRPPEP 452 (1101)
T ss_pred eeecccccccCCCccccchhhhhhhhhhhhcccCcccccccccccccCCCccccccccccchhhhhhhhhhhhhcCCccc
Confidence 99999998999999877999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcHHHHHHHHHHhhccCCccccccCCcccccCCCCCCChHHHHHHHHhHHHHHH-HHHhcCcc
Q 042246 538 FKDFVIGHFYKHAHDILAACKTYMSGAEVGSLVKGGVQNIHKGLDGCTPHFRTSVAGQVDLLVK-EFIRIGVK 609 (639)
Q Consensus 538 Fe~~V~~HF~~~a~~Il~~~k~~~~ga~vg~~~~g~~~~~~~~~~~~s~~Fk~~l~~~~~~Lv~-~F~~~G~~ 609 (639)
|+..|++||..+.+.++.+|.+|-+++.++....+......+....-...|+..|.++.+.+++ +|...|..
T Consensus 453 fe~~vqeh~s~~~~~vvievs~y~a~~tl~~~~~~~p~~r~ea~gs~~~~~~~dL~~~~Eq~leee~~~~gel 525 (1101)
T KOG0895|consen 453 FESTVQEHYSSREHDVVIEVSAYRAGATLGAKVDGIPSGREEAAGSIELKFPTDLAGFAEQVLEEEFQCLGEL 525 (1101)
T ss_pred cchHHhhhhcccchhhhhhhhhcccCcChhhcCCCcccccccccccccccchhhhhhHHHHHHHhhccccccc
Confidence 9999999999999999999999999998887777766554444455567888999999997776 66666653
No 3
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-37 Score=291.04 Aligned_cols=138 Identities=30% Similarity=0.587 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCcc
Q 042246 369 WAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLY 448 (639)
Q Consensus 369 a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy 448 (639)
+.+||.||++.|++++++||.+.+.++|++.|+|+|.||.|||||||.|+++|.||++||++||+|+|+|+ ||||||+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~Tk--IyHPNI~ 79 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTK--IYHPNID 79 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecc--cccCCcC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHH
Q 042246 449 NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLK 525 (639)
Q Consensus 449 ~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~k 525 (639)
..|+|||+||+ +.|+|+. +|..||+||++||.+||| ++|... ..+..++.++..|..+||
T Consensus 80 ~~G~IclDILk-------~~WsPAl-~i~~VllsI~sLL~~Pnp--ddPL~~-------~ia~~~k~d~~~~~~~AR 139 (148)
T KOG0417|consen 80 SNGRICLDILK-------DQWSPAL-TISKVLLSICSLLSDPNP--DDPLVP-------DIAELYKTDRAKYERTAR 139 (148)
T ss_pred ccccchHHhhh-------ccCChhh-HHHHHHHHHHHHhcCCCC--CccccH-------HHHHHHHhhHHHHHHHHH
Confidence 99999999999 6899996 999999999999999999 999543 345677778888888877
No 4
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-37 Score=290.24 Aligned_cols=120 Identities=33% Similarity=0.630 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEEecCC-CCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCC
Q 042246 368 KWAKRIQEEWKILENDLPDTIFVRVYES-RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPN 446 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI~Vrp~ed-nL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 446 (639)
.+.+||++|++.|+++++.+|.+.+..+ |++.|.++|.||++||||||.|++.|.||++||++||+|+|.|+ |||||
T Consensus 5 ~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~--i~HPN 82 (153)
T COG5078 5 SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTK--IFHPN 82 (153)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccC--CcCCC
Confidence 4899999999999999999999998877 99999999999999999999999999999999999999999999 99999
Q ss_pred ccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCc
Q 042246 447 LYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGY 499 (639)
Q Consensus 447 Vy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~ 499 (639)
||.+|+|||++|+ +.|+|++ +|.+||++||+||.+||+ ++|+.
T Consensus 83 V~~~G~vCLdIL~-------~~WsP~~-~l~sILlsl~slL~~PN~--~~Pln 125 (153)
T COG5078 83 VDPSGNVCLDILK-------DRWSPVY-TLETILLSLQSLLLSPNP--DSPLN 125 (153)
T ss_pred cCCCCCChhHHHh-------CCCCccc-cHHHHHHHHHHHHcCCCC--CCCCC
Confidence 9999999999999 8999996 999999999999999999 99953
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=8.7e-35 Score=275.30 Aligned_cols=140 Identities=29% Similarity=0.572 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCcc
Q 042246 369 WAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLY 448 (639)
Q Consensus 369 a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy 448 (639)
+.|||+||+++|+++++.||.+.+.++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+ ||||||+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~--i~HPNV~ 80 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTK--IYHPNID 80 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecC--CeeceEC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHHHHH
Q 042246 449 NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLKTML 528 (639)
Q Consensus 449 ~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~ktm~ 528 (639)
.+|.|||++|+ +.|+|++ ||.+||++|++||.+||| ++|... .++
T Consensus 81 ~~G~iCl~iL~-------~~W~p~~-ti~~iL~~i~~ll~~P~~--~~pln~-------------------------~aa 125 (152)
T PTZ00390 81 KLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSAPEP--DDPLDT-------------------------SVA 125 (152)
T ss_pred CCCeEECccCc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCchHH-------------------------HHH
Confidence 99999999997 6899996 999999999999999999 888422 124
Q ss_pred HHhcCCChhhHHHHHHH
Q 042246 529 YTLRRPPKHFKDFVIGH 545 (639)
Q Consensus 529 ~~L~kpPk~Fe~~V~~H 545 (639)
.++++.++.|++.+++.
T Consensus 126 ~~~~~d~~~f~~~a~~~ 142 (152)
T PTZ00390 126 DHFKNNRADAEKVAREW 142 (152)
T ss_pred HHHHHCHHHHHHHHHHH
Confidence 55666677777765543
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=3.9e-34 Score=269.23 Aligned_cols=142 Identities=28% Similarity=0.570 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCcc
Q 042246 369 WAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLY 448 (639)
Q Consensus 369 a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy 448 (639)
+.+||+||+++|++++++++.+.+.++|+..|+++|.||++|||+||.|+|.|.||++||+.||+|+|.|+ ||||||+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPNv~ 79 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTK--IYHPNIN 79 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecC--cccceEC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHHHHH
Q 042246 449 NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLKTML 528 (639)
Q Consensus 449 ~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~ktm~ 528 (639)
.+|.|||++|. +.|+|++ +|.+||++|++||.+||+ ++|.... ++
T Consensus 80 ~~G~iCl~il~-------~~W~p~~-ti~~il~~i~~ll~~P~~--~~p~n~~-------------------------aa 124 (147)
T PLN00172 80 SNGSICLDILR-------DQWSPAL-TVSKVLLSISSLLTDPNP--DDPLVPE-------------------------IA 124 (147)
T ss_pred CCCEEEcccCc-------CCCCCcC-cHHHHHHHHHHHHhCCCC--CCchHHH-------------------------HH
Confidence 99999999998 6899996 999999999999999999 7773221 13
Q ss_pred HHhcCCChhhHHHHHHHHh
Q 042246 529 YTLRRPPKHFKDFVIGHFY 547 (639)
Q Consensus 529 ~~L~kpPk~Fe~~V~~HF~ 547 (639)
.++++.++.|++.++++..
T Consensus 125 ~~~~~~~~~f~~~a~~~~~ 143 (147)
T PLN00172 125 RVFKENRSRYEATAREWTQ 143 (147)
T ss_pred HHHHHCHHHHHHHHHHHHH
Confidence 4455667777777666544
No 7
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=260.60 Aligned_cols=119 Identities=34% Similarity=0.662 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCc
Q 042246 368 KWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNL 447 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 447 (639)
.|.+||+|+++.|++++|.||+..+.++|++.|.++|+||.+|||+||+|.+.|.|+++||.+||.|+|.|. .|||||
T Consensus 4 pArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~--mFHPNv 81 (152)
T KOG0419|consen 4 PARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSK--MFHPNV 81 (152)
T ss_pred hHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeee--ccCCCc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 448 YNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 448 y~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
|.+|.|||++|. ..|+|.+ ++..||+|||+||.+||| +.|.
T Consensus 82 ya~G~iClDiLq-------NrWsp~Y-dva~ILtsiQslL~dPn~--~sPa 122 (152)
T KOG0419|consen 82 YADGSICLDILQ-------NRWSPTY-DVASILTSIQSLLNDPNP--NSPA 122 (152)
T ss_pred CCCCcchHHHHh-------cCCCCch-hHHHHHHHHHHHhcCCCC--CCcc
Confidence 999999999998 6999997 999999999999999999 8884
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-32 Score=266.42 Aligned_cols=148 Identities=31% Similarity=0.542 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHhCC---CCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCC
Q 042246 369 WAKRIQEEWKILENDL---PDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNP 445 (639)
Q Consensus 369 a~KRL~KELk~Lqk~~---P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHP 445 (639)
+.+||+||++++.+++ -.||.+...++++..+++.|.||+|||||||.|.++|.||++|||+||+|+|.|+ ||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk--IwHP 81 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK--IWHP 81 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee--eecC
Confidence 7899999999999987 5899999999999999999999999999999999999999999999999999999 9999
Q ss_pred Ccc-CCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHH
Q 042246 446 NLY-NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSL 524 (639)
Q Consensus 446 NVy-~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~ 524 (639)
||. .+|.|||++|. +.|++++ ||+.||+|||+||..++| ++|+.+. .+..+..|+..|..+|
T Consensus 82 nVSs~tGaICLDilk-------d~Wa~sl-TlrtvLislQalL~~pEp--~dPqDav-------va~qy~~n~~~F~~TA 144 (200)
T KOG0418|consen 82 NVSSQTGAICLDILK-------DQWAASL-TLRTVLISLQALLCAPEP--KDPQDAV-------VAEQYVDNYEMFYKTA 144 (200)
T ss_pred CCCcccccchhhhhh-------cccchhh-hHHHHHHHHHHHHcCCCC--CChHHHH-------HHHHHhhhHHHHHHHH
Confidence 998 89999999999 7999997 999999999999999999 9997664 5678888999999999
Q ss_pred H--HHHHHhcCCC
Q 042246 525 K--TMLYTLRRPP 535 (639)
Q Consensus 525 k--tm~~~L~kpP 535 (639)
+ |..++-.+.+
T Consensus 145 r~WT~~fA~~~~~ 157 (200)
T KOG0418|consen 145 RYWTTEFAGGRLP 157 (200)
T ss_pred HHHHHHHhCCCCC
Confidence 9 4555555444
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.97 E-value=6.1e-31 Score=242.65 Aligned_cols=116 Identities=37% Similarity=0.717 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhCCCCCeeEEecCC-CCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCccCC
Q 042246 372 RIQEEWKILENDLPDTIFVRVYES-RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNC 450 (639)
Q Consensus 372 RL~KELk~Lqk~~P~gI~Vrp~ed-nL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~~ 450 (639)
||++|++.|+++++.||.+.+.++ ++..|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+ ||||||+.+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~--i~HPni~~~ 78 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTP--IFHPNIDEN 78 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS---SBTTB-TT
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccc--ccccccccc
Confidence 999999999999999999999886 99999999999999999999999999999999999999999999 999999999
Q ss_pred CceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 451 GKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 451 GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
|+||+++|.. +.|+|++ +|.+||++|++||.+|++ ++|.
T Consensus 79 G~icl~~l~~------~~W~p~~-~i~~il~~i~~ll~~p~~--~~~~ 117 (140)
T PF00179_consen 79 GRICLDILNP------ESWSPSY-TIESILLSIQSLLSEPNP--EDPL 117 (140)
T ss_dssp SBBGHGGGTT------TTC-TTS-HHHHHHHHHHHHHHSTCT--TSTS
T ss_pred ccchhhhhhc------ccCCccc-ccccHHHHHHHHHhCCCC--CCcc
Confidence 9999999983 5699986 999999999999998877 7774
No 10
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-30 Score=242.96 Aligned_cols=155 Identities=24% Similarity=0.428 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEEec-CCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCC
Q 042246 368 KWAKRIQEEWKILENDLPDTIFVRVY-ESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPN 446 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI~Vrp~-ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 446 (639)
++..-|+++|+.|++.+.+|+.+.+. +.|++.|.+.|+||++|+||||.|...+.||.+||.+||+++|.|. +||||
T Consensus 5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~--mwHPN 82 (171)
T KOG0425|consen 5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSK--MWHPN 82 (171)
T ss_pred hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehh--hcCCC
Confidence 36678899999999999999999865 5599999999999999999999999999999999999999999999 99999
Q ss_pred ccCCCceeecCccccCC------CCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHH
Q 042246 447 LYNCGKVCLSLLNTWTG------NKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTF 520 (639)
Q Consensus 447 Vy~~GkVCLSLL~Tw~G------~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f 520 (639)
||.+|+||+|||....+ ...|.|+|.. |+++||+||.+||.+||- +.|+.- .
T Consensus 83 vy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~-tvetIllSiIsmL~~PN~--~SPANV-----D-------------- 140 (171)
T KOG0425|consen 83 VYEDGDVCISILHPPGDDPSGYELPSERWLPVQ-TVETILLSIISMLNSPND--ESPANV-----D-------------- 140 (171)
T ss_pred cCCCCCEEEEeecCCCCCcccCCChhhccCCcc-chhHhHHHHHHHHcCCCC--CCccch-----H--------------
Confidence 99999999999985432 3579999985 999999999999988886 666311 1
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHhhcHHH
Q 042246 521 ILSLKTMLYTLRRPPKHFKDFVIGHFYKHAHD 552 (639)
Q Consensus 521 ~~s~ktm~~~L~kpPk~Fe~~V~~HF~~~a~~ 552 (639)
++..+|..+++|++.|+..+++..+.
T Consensus 141 ------Aa~~~Ren~~EykkkV~r~vr~s~e~ 166 (171)
T KOG0425|consen 141 ------AAKEWRENPEEYKKKVRRCVRRSQEE 166 (171)
T ss_pred ------HHHHHhhCHHHHHHHHHHHHHHHHHh
Confidence 13446666888888888777664443
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.97 E-value=6.4e-30 Score=236.45 Aligned_cols=139 Identities=34% Similarity=0.565 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCccCC
Q 042246 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNC 450 (639)
Q Consensus 371 KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~~ 450 (639)
|||++|+++|+++++.|+.|.+.++|+..|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+ ++||||+.+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~--i~HpnV~~~ 79 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTK--IYHPNVDEN 79 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCC--cccCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHHHHHHH
Q 042246 451 GKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLKTMLYT 530 (639)
Q Consensus 451 GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~ktm~~~ 530 (639)
|.||+++|.. +.|+|++ +|.+||++|+++|.+|++ ++|... .++.+
T Consensus 80 G~icl~~l~~------~~W~p~~-~l~~il~~i~~~l~~p~~--~~~~n~-------------------------~aa~~ 125 (141)
T cd00195 80 GKICLSILKT------HGWSPAY-TLRTVLLSLQSLLNEPNP--SDPLNA-------------------------EAAKL 125 (141)
T ss_pred CCCchhhcCC------CCcCCcC-cHHHHHHHHHHHHhCCCC--CCchhH-------------------------HHHHH
Confidence 9999999983 2599997 899999999999997766 666321 12444
Q ss_pred hcCCChhhHHHHHHH
Q 042246 531 LRRPPKHFKDFVIGH 545 (639)
Q Consensus 531 L~kpPk~Fe~~V~~H 545 (639)
+++.++.|++.|+++
T Consensus 126 ~~~~~~~f~~~~~~~ 140 (141)
T cd00195 126 YKENREEFKKKAREW 140 (141)
T ss_pred HHHCHHHHHHHHHHh
Confidence 566778888877654
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-29 Score=231.55 Aligned_cols=123 Identities=27% Similarity=0.524 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeeEEe-cCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCC
Q 042246 367 NKWAKRIQEEWKILENDLPDTIFVRV-YESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNP 445 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~~P~gI~Vrp-~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHP 445 (639)
..++|||++|+++|..++|+||.+.+ .++|++.|.|+|.||+||||+||+|-.++.||.+||..||+++|.-. +|||
T Consensus 3 ~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~--~fHP 80 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCE--MFHP 80 (165)
T ss_pred hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecc--cccC
Confidence 46899999999999999999998876 57899999999999999999999999999999999999999999988 9999
Q ss_pred CccCCCceeecCccccCCC------CCCCCCcCcccHHHHHHHHHHHHhcCCC
Q 042246 446 NLYNCGKVCLSLLNTWTGN------KNEKWMPNMSTMLQVLVSIQALILNQKP 492 (639)
Q Consensus 446 NVy~~GkVCLSLL~Tw~G~------~~E~WSPa~sTIlqVLlSIQsLLl~pnP 492 (639)
|||.+|+||+|||....++ ..|.|+|.. ++..||+|+.+||..||-
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQ-SvEKILLSV~SMLaEPNd 132 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQ-SVEKILLSVVSMLAEPND 132 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHH-HHHHHHHHHHHHHcCCCc
Confidence 9999999999999865543 468999975 999999999999977664
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.96 E-value=6.4e-29 Score=230.76 Aligned_cols=117 Identities=37% Similarity=0.659 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhCCCCCeeEEecCC-CCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCccC
Q 042246 371 KRIQEEWKILENDLPDTIFVRVYES-RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYN 449 (639)
Q Consensus 371 KRL~KELk~Lqk~~P~gI~Vrp~ed-nL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~ 449 (639)
+||++|+++|+++++.|+.|.+.++ |+..|+++|.||.+|||+||+|.|.|.||++||+.||+|+|.|+ +|||||+.
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~--i~Hp~i~~ 78 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITK--IYHPNVDS 78 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCC--ceEeeECC
Confidence 5999999999999999999988775 99999999999999999999999999999999999999999999 99999999
Q ss_pred CCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 450 CGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 450 ~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
+|.||+++|.. +.|+|++ +|.+||++|++||.+|++ ++|.
T Consensus 79 ~G~icl~~l~~------~~W~p~~-~l~~il~~i~~~l~~p~~--~~~~ 118 (145)
T smart00212 79 SGEICLDILKQ------EKWSPAT-TLETVLLSIQSLLSEPNP--DSPL 118 (145)
T ss_pred CCCEehhhcCC------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcc
Confidence 99999999973 6899995 999999999999998777 7773
No 14
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.6e-29 Score=231.73 Aligned_cols=147 Identities=27% Similarity=0.500 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeeEEecC-----CCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCc
Q 042246 367 NKWAKRIQEEWKILENDLPDTIFVRVYE-----SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGL 441 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~~P~gI~Vrp~e-----dnL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~ 441 (639)
..++.||+.|-+.+.++.|-|+++.+.. .|+..|.|.|.|+.|||||||.|.+.+.||++||+.||+|+|.++
T Consensus 3 ~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p-- 80 (158)
T KOG0424|consen 3 GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP-- 80 (158)
T ss_pred chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC--
Confidence 3568999999999999999999998753 378899999999999999999999999999999999999999999
Q ss_pred ccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHH
Q 042246 442 RLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFI 521 (639)
Q Consensus 442 IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~ 521 (639)
.||||||.+|.|||+||+. ..+|+|+. ||.|||+.||.||..||+ .+|+...
T Consensus 81 l~HPNVypsgtVcLsiL~e-----~~~W~pai-tikqiL~gIqdLL~~Pn~--~~pAq~e-------------------- 132 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNE-----EKDWRPAI-TIKQILLGIQDLLDTPNI--TSPAQTE-------------------- 132 (158)
T ss_pred CcCCCcCCCCcEehhhhcc-----ccCCCchh-hHHHHHHHHHHHhcCCCC--CCchhhH--------------------
Confidence 9999999999999999983 23599998 999999999999999999 8884221
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHhh
Q 042246 522 LSLKTMLYTLRRPPKHFKDFVIGHFYK 548 (639)
Q Consensus 522 ~s~ktm~~~L~kpPk~Fe~~V~~HF~~ 548 (639)
....+++++.++++.|+..-++
T Consensus 133 -----A~~~~~~~r~eYekrvr~qak~ 154 (158)
T KOG0424|consen 133 -----AYTIYCQDRAEYEKRVRAQAKE 154 (158)
T ss_pred -----HHHHHhhCHHHHHHHHHHHHHH
Confidence 1334667777888877755443
No 15
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.1e-28 Score=228.50 Aligned_cols=145 Identities=23% Similarity=0.369 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCC
Q 042246 366 TNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNP 445 (639)
Q Consensus 366 s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHP 445 (639)
.....|||++||..|....-+||++.+.++|++.|.++|.||.+|+|+|-.|++.+.||.+||+.||+|+|+|+ .|||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltp--c~HP 104 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTP--CFHP 104 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecc--ccCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHH
Q 042246 446 NLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLK 525 (639)
Q Consensus 446 NVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~k 525 (639)
||+..|.|||+||. ++|+..+ .+++||+|||+||-.||- ..|..+
T Consensus 105 NVD~~GnIcLDILk-------dKWSa~Y-dVrTILLSiQSLLGEPNn--~SPLNa------------------------- 149 (175)
T KOG0421|consen 105 NVDLSGNICLDILK-------DKWSAVY-DVRTILLSIQSLLGEPNN--SSPLNA------------------------- 149 (175)
T ss_pred CccccccchHHHHH-------HHHHHHH-hHHHHHHHHHHHhCCCCC--CCcchh-------------------------
Confidence 99999999999999 8999986 999999999999988886 666321
Q ss_pred HHHHHhcCCChhhHHHHHHHHhh
Q 042246 526 TMLYTLRRPPKHFKDFVIGHFYK 548 (639)
Q Consensus 526 tm~~~L~kpPk~Fe~~V~~HF~~ 548 (639)
.+..|-+.+++|++.+.+.+++
T Consensus 150 -qAAelW~d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 150 -QAAELWSDQEEYKKYLEALYKE 171 (175)
T ss_pred -HHHHHhcCHHHHHHHHHHHhhc
Confidence 1233445778888877765543
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-26 Score=226.04 Aligned_cols=166 Identities=22% Similarity=0.408 Sum_probs=137.2
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccC
Q 042246 365 PTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLN 444 (639)
Q Consensus 365 ~s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfH 444 (639)
+++.+.|||+||++.|+++++++|.+++.++|+.+||.+|.||+||||+||.|+..|.||++||++||.|+++|+++||-
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFk 81 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFK 81 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCcee
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHH
Q 042246 445 PNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSL 524 (639)
Q Consensus 445 PNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~ 524 (639)
+| -++|||+-. .+++.|+|. |++.+||.++.+++.+ ++|...++..+.. +.+.+..
T Consensus 82 tn----tRLCLSiSD----fHPdsWNP~-WsVStILtGLlSFM~e-----~~pTtGSI~tS~~----------~kr~lA~ 137 (244)
T KOG0894|consen 82 TN----TRLCLSISD----FHPDSWNPG-WSVSTILTGLLSFMTE-----DSPTTGSIETSDQ----------DKRMLAK 137 (244)
T ss_pred cC----ceEEEeccc----cCcCcCCCc-ccHHHHHHHHHHHHhc-----CCCccCcccccHH----------HHHHHHH
Confidence 99 799999865 789999997 7999999999999988 6777777765541 1222333
Q ss_pred HHHHHHhcCCChhhHHHHHHHHhhcHHHHHHH
Q 042246 525 KTMLYTLRRPPKHFKDFVIGHFYKHAHDILAA 556 (639)
Q Consensus 525 ktm~~~L~kpPk~Fe~~V~~HF~~~a~~Il~~ 556 (639)
.+.++.+++ ..|.++.-+.+.+..++.+++
T Consensus 138 ~SlaFN~kn--~~F~~lFPE~Vee~nq~~~a~ 167 (244)
T KOG0894|consen 138 SSLAFNLKN--PKFCELFPEVVEEYNQEQLAK 167 (244)
T ss_pred hhhhhccCC--hHHHHHhHHHHHHHHHHHHHh
Confidence 356666665 346555555555544443333
No 17
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.1e-26 Score=211.60 Aligned_cols=119 Identities=27% Similarity=0.549 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCe-eEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCC
Q 042246 368 KWAKRIQEEWKILENDLPDTI-FVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPN 446 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI-~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 446 (639)
.+.+||+|||.+|+++....+ -++.++.+++.|.++|+ |.+-||..|.|.+.|.||.+|||+||+|+|.|+ |||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tk--iYHpN 78 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTK--IYHPN 78 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeee--eccCC
Confidence 367899999999999988766 45678899999999999 788899999999999999999999999999999 99999
Q ss_pred ccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 447 LYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 447 Vy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
|+..|.|||.+|.+ |+|.|++ ++.|||+++.+|+.+|+| ..|.
T Consensus 79 VDe~gqvClPiis~------EnWkP~T-~teqVlqaLi~liN~P~p--e~pl 121 (153)
T KOG0422|consen 79 VDEKGQVCLPIISA------ENWKPAT-RTEQVLQALIALINDPEP--EHPL 121 (153)
T ss_pred CCCCCceeeeeeec------ccccCcc-cHHHHHHHHHHHhcCCCc--cccc
Confidence 99999999999995 9999998 999999999999999998 7773
No 18
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-24 Score=206.75 Aligned_cols=143 Identities=23% Similarity=0.447 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCcc-
Q 042246 370 AKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLY- 448 (639)
Q Consensus 370 ~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy- 448 (639)
-|||..++..|.. .+..|.+.++.+.++.+.+.||.+|||+||+|.++|.+|++||++.|.|.|.|+ ||||||+
T Consensus 5 ~rRid~Dv~KL~~---s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnK--IfHPNIDe 79 (189)
T KOG0416|consen 5 KRRIDTDVMKLLM---SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNK--IFHPNIDE 79 (189)
T ss_pred ccchhhHHHHHHh---cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceee--ccCCCchh
Confidence 3788888888865 466899999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceeecCccccCCCCCCCCCcCcccHHHHHHHH-HHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHHHH
Q 042246 449 NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSI-QALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLKTM 527 (639)
Q Consensus 449 ~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSI-QsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~ktm 527 (639)
.+|.|||++|+ +.|+|-+ .+..|+..+ -.||..||| .+| +++.|
T Consensus 80 ~SGsVCLDViN-------QtWSp~y-DL~NIfetfLPQLL~YPNp--~DP----LN~eA--------------------- 124 (189)
T KOG0416|consen 80 ASGSVCLDVIN-------QTWSPLY-DLVNIFETFLPQLLRYPNP--SDP----LNGEA--------------------- 124 (189)
T ss_pred ccCccHHHHHh-------hhhhHHH-HHHHHHHHHhHHHhcCCCC--CCC----cccHH---------------------
Confidence 89999999999 7999976 999999775 589999999 888 44443
Q ss_pred HHHhcCCChhhHHHHHHHHhhcHHH
Q 042246 528 LYTLRRPPKHFKDFVIGHFYKHAHD 552 (639)
Q Consensus 528 ~~~L~kpPk~Fe~~V~~HF~~~a~~ 552 (639)
+.++.+.|+.|++.|++++.++|..
T Consensus 125 Aal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 125 AALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred HHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 4557777899999988887776653
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-24 Score=207.60 Aligned_cols=158 Identities=27% Similarity=0.540 Sum_probs=130.9
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCccc
Q 042246 364 QPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRL 443 (639)
Q Consensus 364 ~~s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~If 443 (639)
.-+...+|.|+||++.|..++|.||.|.+.++++...++.|.||.||||++|+|++.+.+..+||..||+-+|+|+ ||
T Consensus 6 nlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTK--IF 83 (223)
T KOG0423|consen 6 NLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTK--IF 83 (223)
T ss_pred CCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeee--ec
Confidence 4567789999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHH
Q 042246 444 NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILS 523 (639)
Q Consensus 444 HPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s 523 (639)
||||-.+|.||...|. .+|+|.+ .|..||+.|.+||..||| .... ++..|..-...|.+ |.+.
T Consensus 84 HPNVaaNGEICVNtLK-------kDW~p~L-GirHvLltikCLLI~PnP--ESAL-----NEeAGkmLLEnYde--Ya~r 146 (223)
T KOG0423|consen 84 HPNVAANGEICVNTLK-------KDWNPSL-GIRHVLLTIKCLLIEPNP--ESAL-----NEEAGKMLLENYDE--YARR 146 (223)
T ss_pred cCCcccCceehhhhhh-------cccCccc-chhhHhhhhheeeecCCh--HHHH-----hHHHHHHHHHhHHH--HHHH
Confidence 9999999999999998 7999997 999999999999999999 3332 22223333344544 4444
Q ss_pred HHHHHHHhcCCChhhHH
Q 042246 524 LKTMLYTLRRPPKHFKD 540 (639)
Q Consensus 524 ~ktm~~~L~kpPk~Fe~ 540 (639)
+|-|..+-.+|-.-|..
T Consensus 147 ARl~TeIHa~p~~~~~~ 163 (223)
T KOG0423|consen 147 ARLYTEIHAKPKPKFKT 163 (223)
T ss_pred HHHHHHhhcCCCCCccc
Confidence 44444444444344443
No 20
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.1e-23 Score=191.58 Aligned_cols=116 Identities=27% Similarity=0.521 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccC
Q 042246 365 PTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLN 444 (639)
Q Consensus 365 ~s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfH 444 (639)
-+..+.+||+|||.+++.++|.|+.++ ..+|+..|.+-+.|.+||.|+|..|.+.+.||+.||+..|.|.|..+ ...|
T Consensus 12 ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~-~P~H 89 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP-APLH 89 (161)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC-CCCC
Confidence 356789999999999999999999988 56799999999999999999999999999999999999999999987 6899
Q ss_pred CCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcC
Q 042246 445 PNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490 (639)
Q Consensus 445 PNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~p 490 (639)
|+||.+|.|||+||. +.|+|++ ++.+|.+||.+||...
T Consensus 90 PHiYSNGHICL~iL~-------d~WsPAm-sv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 90 PHIYSNGHICLDILY-------DSWSPAM-SVQSVCLSILSMLSSS 127 (161)
T ss_pred CceecCCeEEEEeec-------ccCCcch-hhHHHHHHHHHHHccC
Confidence 999999999999998 8999998 9999999999999764
No 21
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.6e-23 Score=198.30 Aligned_cols=139 Identities=25% Similarity=0.453 Sum_probs=113.4
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCeeEE--ecCCCCce--EEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCC
Q 042246 365 PTNKWAKRIQEEWKILENDLPDTIFVR--VYESRMDL--LRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGG 440 (639)
Q Consensus 365 ~s~~a~KRL~KELk~Lqk~~P~gI~Vr--p~ednL~~--W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~ 440 (639)
..+.++-||++++.+| ++|+++... ...++++. ++.+|. |....|.||.|.|.+.+|+.||+.||+|+|+|+
T Consensus 25 ~~s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk- 100 (184)
T KOG0420|consen 25 KVSAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK- 100 (184)
T ss_pred cccHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec-
Confidence 3445666777775555 688887543 22344444 788877 666699999999999999999999999999999
Q ss_pred cccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHH
Q 042246 441 LRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTF 520 (639)
Q Consensus 441 ~IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f 520 (639)
+|||||+.+|.|||+||+ ++|+|.. +|.+|+.+++.|+++||| +||. +..
T Consensus 101 -V~HPNId~~GnVCLnILR-------edW~P~l-nL~sIi~GL~~LF~epn~--eDpL----N~e--------------- 150 (184)
T KOG0420|consen 101 -VYHPNIDLDGNVCLNILR-------EDWRPVL-NLNSIIYGLQFLFLEPNP--EDPL----NKE--------------- 150 (184)
T ss_pred -cccCCcCCcchHHHHHHH-------hcCcccc-chHHHHHHHHHHhccCCC--cccc----cHH---------------
Confidence 999999999999999999 8999997 999999999999999997 9993 322
Q ss_pred HHHHHHHHHHhcCCChhhHHHHH
Q 042246 521 ILSLKTMLYTLRRPPKHFKDFVI 543 (639)
Q Consensus 521 ~~s~ktm~~~L~kpPk~Fe~~V~ 543 (639)
++..+++.++.|+..|+
T Consensus 151 ------AA~~l~~n~e~F~~~Vr 167 (184)
T KOG0420|consen 151 ------AAAVLKSNREGFENNVR 167 (184)
T ss_pred ------HHHHHHhCHHHHHHHHH
Confidence 25668888899987644
No 22
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.7e-19 Score=181.07 Aligned_cols=135 Identities=24% Similarity=0.429 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCC
Q 042246 366 TNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNP 445 (639)
Q Consensus 366 s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHP 445 (639)
...++|||+||.++|+ ++-..+.+.+.|+|+++|+.+|.||.||-|+||+|+.+|.||.+||++||.+..+|+++||.-
T Consensus 9 KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE~ 87 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFEV 87 (314)
T ss_pred cCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCceee
Confidence 3568999999999999 666777888999999999999999999999999999999999999999999999999889887
Q ss_pred CccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHH
Q 042246 446 NLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLK 525 (639)
Q Consensus 446 NVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~k 525 (639)
| -+|||||-+ .++|.|.|. |+|++.|++|.++| | ..| +|..-+..|-.+.+...++
T Consensus 88 n----kKiCLSISg----yHPEtWqPS-WSiRTALlAlIgFm----P--t~p---------~GAlGSlDYpp~ERr~LAk 143 (314)
T KOG0428|consen 88 N----KKICLSISG----YHPETWQPS-WSIRTALLALIGFM----P--TKP---------EGALGSLDYPPEERRALAK 143 (314)
T ss_pred C----ceEEEEecC----CCccccCcc-hhHHHHHHHHHccc----c--CCC---------CCccccCcCCHHHHHHHHH
Confidence 7 789999965 889999998 79999999999988 3 223 4455677787777666554
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.5e-13 Score=135.39 Aligned_cols=152 Identities=18% Similarity=0.282 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCC--CCCeeeeccCCcccCCCc
Q 042246 370 AKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN--VPPNVYYHSGGLRLNPNL 447 (639)
Q Consensus 370 ~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~--~PPkV~F~T~~~IfHPNV 447 (639)
.-.|..|+..+.+...+||+|.|.-.+-.+|.++|++..| .|.||+|+|.|.+|++||. .-|+|.|.+. +|||.|
T Consensus 21 ey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~--vfHP~i 97 (258)
T KOG0429|consen 21 EYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQS--VFHPLI 97 (258)
T ss_pred HHHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeecc--cccccc
Confidence 3467778888888888999999999999999999999999 9999999999999999994 8899999999 999999
Q ss_pred c-CCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHHH
Q 042246 448 Y-NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLKT 526 (639)
Q Consensus 448 y-~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~kt 526 (639)
. .++.+||.-.- ..|.-....|++||+.||..+.+++- .-+ .+.+. .
T Consensus 98 cp~skeLdl~raf-------~eWRk~ehhiwqvL~ylqriF~dpd~--si~---kl~N~--------------------e 145 (258)
T KOG0429|consen 98 CPKSKELDLNRAF-------PEWRKEEHHIWQVLVYLQRIFYDPDV--SID---KLINP--------------------E 145 (258)
T ss_pred CCCccceeHhhhh-------hhhhccccHHHHHHHHHHHHhcCccc--chh---hhcCh--------------------H
Confidence 8 78999998765 25988888999999999999987664 111 11000 1
Q ss_pred HHHHhcCCChhhHHHHHHHHhhcHHHHHHH
Q 042246 527 MLYTLRRPPKHFKDFVIGHFYKHAHDILAA 556 (639)
Q Consensus 527 m~~~L~kpPk~Fe~~V~~HF~~~a~~Il~~ 556 (639)
++-++++....|.+.|++..+.....|.++
T Consensus 146 Aa~l~~k~r~ef~~rvqe~vk~sr~~iyD~ 175 (258)
T KOG0429|consen 146 AAVLYKKHRDEFRERVQECVKASRSMIYDE 175 (258)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcCC
Confidence 244566666777777776666655555443
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=8.6e-08 Score=90.02 Aligned_cols=110 Identities=17% Similarity=0.293 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhCCCCCeeE-Ee-cCCC--CceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCC
Q 042246 371 KRIQEEWKILENDLPDTIFV-RV-YESR--MDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPN 446 (639)
Q Consensus 371 KRL~KELk~Lqk~~P~gI~V-rp-~edn--L~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 446 (639)
-||.+||..=++-.-++..- -. +.++ +..|.+.|+||+-|+||+-+|.+.|.+-++||..||.|+|.|+ +--+.
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk--inm~g 85 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK--INMNG 85 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE--eeecc
Confidence 46778777666554444322 22 2234 3479999999999999999999999999999999999999997 54444
Q ss_pred cc-CCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHh
Q 042246 447 LY-NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALIL 488 (639)
Q Consensus 447 Vy-~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl 488 (639)
+. .+|.|--.-+.. -++|.-.+ +|..||..++-+++
T Consensus 86 vn~~~g~Vd~~~i~~-----L~~W~~~y-~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITV-----LARWQRSY-SIKMVLGQLRKEMM 122 (138)
T ss_pred cccCCCccCccccch-----hhcccccc-hhhHHHHhhhHHHH
Confidence 44 556654322221 15899987 99999999986544
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.2e-05 Score=74.10 Aligned_cols=65 Identities=20% Similarity=0.437 Sum_probs=53.2
Q ss_pred EEEEEEcCCCCCCCCCeeeeccCCcccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhc
Q 042246 417 FFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489 (639)
Q Consensus 417 F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~ 489 (639)
..+.+.|+++||+.||.++...+ .+-.-.+-.+|.||+.||.+ ++|+.++ +|+.|+++|.+++..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p-~~~~Gyvl~ggAIcmellt~------qgwssay-~Ve~vi~qiaatlVk 77 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKP-LEDEGYVLEGGAICMELLTK------QGWSSAY-EVERVIMQIAATLVK 77 (122)
T ss_pred eEeeeecccCCCCCCCcceeeee-cccCCEEecchhhHHHHHcc------ccccchh-hHHHHHHHHHHHhhc
Confidence 45678899999999999997765 22233334789999999995 9999986 999999999998854
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.72 E-value=7.3e-05 Score=69.81 Aligned_cols=68 Identities=29% Similarity=0.578 Sum_probs=59.0
Q ss_pred CCceEEEEEEcCCCCCCCCCeeeeccCCcc-cCCCccCCCceee---cCccccCCCCCCCCCcCcccHHHHHHHHHHHHh
Q 042246 413 HDGLFFFDVFFPSSYPNVPPNVYYHSGGLR-LNPNLYNCGKVCL---SLLNTWTGNKNEKWMPNMSTMLQVLVSIQALIL 488 (639)
Q Consensus 413 eGGlF~fdI~FP~dYP~~PPkV~F~T~~~I-fHPNVy~~GkVCL---SLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl 488 (639)
.++.|.+.|.||+.||..||.|....+..+ +=|+|+.+|.||+ .+.- +.|.|.. ++..+|.+++.+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~-------D~~~P~~-~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVL-------DPWDPEG-IIADCLERAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCccc-------CccCHHH-HHHHHHHHHHHHHH
Confidence 689999999999999999999999865322 7899999999999 5544 7999985 99999999999986
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.47 E-value=0.00039 Score=64.56 Aligned_cols=71 Identities=24% Similarity=0.555 Sum_probs=51.0
Q ss_pred CCCCceE--EEEEEcCCCCCCCCCeeeeccC---CcccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHH
Q 042246 411 PYHDGLF--FFDVFFPSSYPNVPPNVYYHSG---GLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQA 485 (639)
Q Consensus 411 PYeGGlF--~fdI~FP~dYP~~PPkV~F~T~---~~IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQs 485 (639)
.|.|..| -+.|.||.+||..||.|...-. .++-+.+|+.+|+|++..|. .|++..++|.+++..++.
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~--------~W~~~~s~L~~lv~~l~~ 113 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ--------NWNPPSSNLVDLVQELQA 113 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH--------T--TTTS-HHHHHHHHHH
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc--------cCCCCCCCHHHHHHHHHH
Confidence 5778777 5678899999999999988532 24456699999999999998 787755799999888888
Q ss_pred HHhc
Q 042246 486 LILN 489 (639)
Q Consensus 486 LLl~ 489 (639)
.+..
T Consensus 114 ~F~~ 117 (121)
T PF05743_consen 114 VFSE 117 (121)
T ss_dssp CCCH
T ss_pred HHhH
Confidence 7754
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.89 E-value=0.0009 Score=64.19 Aligned_cols=86 Identities=22% Similarity=0.422 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCce----------EEEEEEcCCCCCCCCCeeee
Q 042246 367 NKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGL----------FFFDVFFPSSYPNVPPNVYY 436 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGl----------F~fdI~FP~dYP~~PPkV~F 436 (639)
..|..||..|+..|-+ +|.....+-..|.-+=.-+.||-|.|-+ |.|.+.+|..||..||.+..
T Consensus 23 ~~W~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l 96 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL 96 (161)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-
T ss_pred HHHHHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec
Confidence 7899999999999854 2222222222343333446666665533 44556679999999999987
Q ss_pred ccCCcccCCCccCCCceeecCcc
Q 042246 437 HSGGLRLNPNLYNCGKVCLSLLN 459 (639)
Q Consensus 437 ~T~~~IfHPNVy~~GkVCLSLL~ 459 (639)
-.=. ---.-.|..|+|||++-.
T Consensus 97 PeLd-GKTaKMYRGGkIClt~HF 118 (161)
T PF08694_consen 97 PELD-GKTAKMYRGGKICLTDHF 118 (161)
T ss_dssp GGGT-TT-SSBCCCCBB---TTH
T ss_pred cccC-CchhhhhcCceEeeeccc
Confidence 4200 012346788999998743
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.011 Score=63.60 Aligned_cols=82 Identities=22% Similarity=0.489 Sum_probs=65.5
Q ss_pred cCCCCCCCCceEE--EEEEcCCCCCCCCCeeeecc-C--CcccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHH
Q 042246 406 GAEGTPYHDGLFF--FDVFFPSSYPNVPPNVYYHS-G--GLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVL 480 (639)
Q Consensus 406 GP~gTPYeGGlF~--fdI~FP~dYP~~PPkV~F~T-~--~~IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVL 480 (639)
|---+||.|.+|- +.|.+.+.||..||.|...- . ....|-+|+.+|+|.|..|. .|.+.-+.|..++
T Consensus 57 GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh--------~W~~pssdLv~Li 128 (365)
T KOG2391|consen 57 GTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH--------NWDPPSSDLVGLI 128 (365)
T ss_pred CcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc--------cCCCccchHHHHH
Confidence 3333578888876 56678999999999997752 1 12338999999999999998 8998878899998
Q ss_pred HHHHHHHhcCCCCCC
Q 042246 481 VSIQALILNQKPYFN 495 (639)
Q Consensus 481 lSIQsLLl~pnPyfn 495 (639)
.-+.+.+..+.|.|.
T Consensus 129 q~l~a~f~~~pP~ys 143 (365)
T KOG2391|consen 129 QELIAAFSEDPPVYS 143 (365)
T ss_pred HHHHHHhcCCCcccc
Confidence 888899988887766
No 30
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.91 E-value=0.19 Score=47.43 Aligned_cols=97 Identities=20% Similarity=0.403 Sum_probs=65.4
Q ss_pred CCeeEEecCCCCceEEEEEEc---CCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCccCCCce--eecCccc
Q 042246 386 DTIFVRVYESRMDLLRAVIVG---AEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNCGKV--CLSLLNT 460 (639)
Q Consensus 386 ~gI~Vrp~ednL~~W~avI~G---P~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~~GkV--CLSLL~T 460 (639)
.|+.++...+.-..|-+ |.| |+| .|....-.+-|.+|..||..+|.|-|..+.+.. -..|.| |-+...+
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G-~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~----~~G~~iP~~~~~~~~ 85 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEG-KYNHNEVDILILIPPGYPDAPLDMFYVYPPLKL----ADGGPIPNAAEVTQT 85 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCC-ccCccceEEEEECCCCCCCCCCCcEEECCceEc----cCCCcCCchhcchhh
Confidence 35555544333334443 444 666 699999999999999999999998777652211 022445 6555544
Q ss_pred cCC-------CCCCCCCcCcccHHHHHHHHHHHHh
Q 042246 461 WTG-------NKNEKWMPNMSTMLQVLVSIQALIL 488 (639)
Q Consensus 461 w~G-------~~~E~WSPa~sTIlqVLlSIQsLLl 488 (639)
..| ++...|.|..-+|.+.|.-|...|.
T Consensus 86 ~~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 86 FDGRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred cCCeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 333 3578999988899999998887764
No 31
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=0.045 Score=52.19 Aligned_cols=85 Identities=25% Similarity=0.466 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCce--------EEEE--EEcCCCCCCCCCeee
Q 042246 366 TNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGL--------FFFD--VFFPSSYPNVPPNVY 435 (639)
Q Consensus 366 s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGl--------F~fd--I~FP~dYP~~PPkV~ 435 (639)
...|..||..|++.|-. +|+-..++-..|.-+=.-++||-|-|.+ |.|+ +.+|-.||...|.+.
T Consensus 25 ~~~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeia 98 (167)
T KOG3357|consen 25 GDLWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIA 98 (167)
T ss_pred chHHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccc
Confidence 45799999999999854 2232333333454444668898888754 4455 556999999999987
Q ss_pred eccCCcccCCCccCCCceeecC
Q 042246 436 YHSGGLRLNPNLYNCGKVCLSL 457 (639)
Q Consensus 436 F~T~~~IfHPNVy~~GkVCLSL 457 (639)
.---. -----.|..|+|||.-
T Consensus 99 lpeld-gktakmyrggkiclt~ 119 (167)
T KOG3357|consen 99 LPELD-GKTAKMYRGGKICLTD 119 (167)
T ss_pred ccccC-chhhhhhcCceEeecc
Confidence 63200 0012356789999964
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=91.58 E-value=0.5 Score=41.29 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEE--cCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccC
Q 042246 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIV--GAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSG 439 (639)
Q Consensus 371 KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~--GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~ 439 (639)
.+...|+..|+.--+..+ +.....+...+.+.+. ....+.-..-.+.+.|.||++||..||.|.+.+.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 467788888876444333 2222334445566662 2333344456899999999999999999987764
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=89.05 E-value=3.5 Score=35.76 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCceEEEEEEcCCCCCCCCCeeeeccC
Q 042246 413 HDGLFFFDVFFPSSYPNVPPNVYYHSG 439 (639)
Q Consensus 413 eGGlF~fdI~FP~dYP~~PPkV~F~T~ 439 (639)
+.-.+.+.|.||.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999988764
No 34
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=69.29 E-value=1.3 Score=36.74 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=16.9
Q ss_pred HHHHhHHHHHHHHHhcCcccccccccC
Q 042246 591 SVAGQVDLLVKEFIRIGVKDCEKFLTQ 617 (639)
Q Consensus 591 ~l~~~~~~Lv~~F~~~G~~d~~~~~~~ 617 (639)
++.|+.+.||++|+.||| +.+++++-
T Consensus 4 ~~~Gi~~~lVd~F~~mGF-~~dkVvev 29 (55)
T PF09288_consen 4 ALYGIDKDLVDQFENMGF-ERDKVVEV 29 (55)
T ss_dssp S----SHHHHHHHHHHT---HHHHHHH
T ss_pred HHcCCCHHHHHHHHHcCC-cHHHHHHH
Confidence 567999999999999999 77777653
No 35
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=65.57 E-value=9.1 Score=37.73 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=47.8
Q ss_pred EEEEcCCCCCCCCCeeeeccCCccc-CCCccCC-----CceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhc
Q 042246 419 FDVFFPSSYPNVPPNVYYHSGGLRL-NPNLYNC-----GKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489 (639)
Q Consensus 419 fdI~FP~dYP~~PPkV~F~T~~~If-HPNVy~~-----GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~ 489 (639)
+.|.|+.+||..+|.|.+.-....- +|++... ..+||-.-. | ..|.+. +++..+|..|..-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~-~-----~e~~~~-~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP-W-----SEWRPS-WGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC-H-----HHhhhc-cCHHHHHHHHHHHHHH
Confidence 5689999999999987776542222 4667655 679997654 4 588887 4999999999887743
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=45.42 E-value=38 Score=36.40 Aligned_cols=91 Identities=15% Similarity=0.376 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCC
Q 042246 367 NKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPN 446 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 446 (639)
....++|.+|+..|..+.. +.+. .++++...+..+..-. -...+.|.+|.+||..+|.+..--+
T Consensus 98 ~~~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D~~------R~H~l~l~l~~~yp~~~p~~~~~~P------- 161 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFDSS------RQHYLELKLPSNYPFEPPSCSLDLP------- 161 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEETTC------EEEEEEEETTTTTTTSEEEECS-TT-------
T ss_pred cHHHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEcCC------ceEEEEEEECCCCCCCCceeeCCCC-------
Confidence 5678899999999987643 2222 2557888888887422 3567899999999999997643322
Q ss_pred ccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhc
Q 042246 447 LYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN 489 (639)
Q Consensus 447 Vy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~ 489 (639)
+.+. ..|.+..++|..|+..++..|..
T Consensus 162 --------~~~~--------~~w~~~~ssL~~v~~qF~~~le~ 188 (291)
T PF09765_consen 162 --------IPFS--------LSWSPSQSSLKDVVQQFQEALES 188 (291)
T ss_dssp --------S-HH--------HHHHCHT-SHHHHHHHHHHHHHH
T ss_pred --------cchh--------hhhcccccCHHHHHHHHHHHHHH
Confidence 2111 36888446999999888888854
No 37
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=27.72 E-value=42 Score=39.34 Aligned_cols=52 Identities=23% Similarity=0.475 Sum_probs=39.5
Q ss_pred CCCCceEEEEEEcCCCCCC---CCCeeeeccCCcccCCCccCCCceeecCccccCCC
Q 042246 411 PYHDGLFFFDVFFPSSYPN---VPPNVYYHSGGLRLNPNLYNCGKVCLSLLNTWTGN 464 (639)
Q Consensus 411 PYeGGlF~fdI~FP~dYP~---~PPkV~F~T~~~IfHPNVy~~GkVCLSLL~Tw~G~ 464 (639)
||.=|.|-+ +.+|+.||+ .-|-+.|.|+.++-+=+-- --.||..|-..|.|.
T Consensus 249 pY~WgryDl-lvlPpSFP~gGMENPcltF~TpTllaGDrsl-~~vIaHEIAHSWtGN 303 (613)
T KOG1047|consen 249 PYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPTLLAGDRSL-VDVIAHEIAHSWTGN 303 (613)
T ss_pred CcccccceE-EEecCCCCcccccCcceeeecchhhcCCcch-hhHHHHHhhhhhccc
Confidence 788888876 557999997 7899999998555443322 235899999999886
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=25.31 E-value=1.5e+02 Score=32.70 Aligned_cols=44 Identities=27% Similarity=0.631 Sum_probs=34.8
Q ss_pred CceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCc
Q 042246 397 MDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNL 447 (639)
Q Consensus 397 L~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 447 (639)
.+.++..| ||.+-...-+|.|...||..||-+.|..- --|+|..
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD-~~F~pd~ 96 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGED-DNFLPDP 96 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCC-cCcCCCh
Confidence 45555555 69999999999999999999999999632 2588853
No 39
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=20.14 E-value=4.2e+02 Score=29.29 Aligned_cols=53 Identities=19% Similarity=0.329 Sum_probs=31.5
Q ss_pred CCCCCCCCceEEEE-EEcCCCCCCCCCe--eeeccCCcccCCCccCCCceeecCccccCCCCCCCCCcCcc
Q 042246 407 AEGTPYHDGLFFFD-VFFPSSYPNVPPN--VYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMS 474 (639)
Q Consensus 407 P~gTPYeGGlF~fd-I~FP~dYP~~PPk--V~F~T~~~IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~s 474 (639)
|...||+|.+|.+. -..+...+.-|+. .-+-++.+.+||| |--.+. .|-|..+
T Consensus 237 p~cap~QGkV~s~~~~~~~~~~~~y~~~~~~gyg~~~Gl~g~N-------CrH~~~--------p~~~Gi~ 292 (361)
T PF06152_consen 237 PSCAPWQGKVYSLSGGGRPGKDGKYPSLSDTGYGTPAGLFGPN-------CRHSLY--------PFIPGIS 292 (361)
T ss_pred CCCcCcCCEEEEeccCCCCCCCCCCCchhhccccccCCCcccC-------CCCccc--------CCCCCCC
Confidence 66789999999332 1112222222232 2344566799999 877776 5777763
Done!