Query 042246
Match_columns 639
No_of_seqs 336 out of 1670
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 07:02:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ceg_A Baculoviral IAP repeat- 100.0 1.3E-48 4.5E-53 406.3 23.7 259 340-606 38-314 (323)
2 1yh2_A HSPC150 protein similar 100.0 4.8E-37 1.6E-41 292.6 19.1 164 365-543 1-166 (169)
3 2pwq_A Ubiquitin conjugating e 100.0 5.5E-37 1.9E-41 303.6 16.9 181 363-562 18-205 (216)
4 3h8k_A Ubiquitin-conjugating e 100.0 1.1E-36 3.9E-41 287.7 17.3 126 368-498 3-135 (164)
5 2ucz_A UBC7, ubiquitin conjuga 100.0 1.3E-36 4.6E-41 287.8 16.9 127 367-498 3-136 (165)
6 2ayv_A Ubiquitin-conjugating e 100.0 1.8E-36 6.3E-41 288.5 15.7 123 364-498 17-139 (166)
7 3rz3_A Ubiquitin-conjugating e 100.0 5.4E-36 1.9E-40 288.8 18.2 159 365-553 4-175 (183)
8 1z2u_A Ubiquitin-conjugating e 100.0 2.7E-36 9.3E-41 281.7 15.5 122 366-499 2-123 (150)
9 1zdn_A Ubiquitin-conjugating e 100.0 2.1E-36 7.3E-41 285.1 14.7 125 362-498 7-131 (158)
10 1ayz_A UBC2, ubiquitin-conjuga 100.0 3.9E-36 1.3E-40 287.0 16.6 147 368-551 4-150 (169)
11 2c4o_A Ubiquitin-conjugating e 100.0 5.7E-36 1.9E-40 284.7 17.2 128 360-499 11-138 (165)
12 4gpr_A Ubiquitin-conjugating e 100.0 1.6E-35 5.5E-40 277.0 19.7 121 366-498 2-122 (151)
13 2e2c_A Ubiquitin conjugating e 100.0 9.4E-36 3.2E-40 279.9 17.2 147 366-550 7-153 (156)
14 2r0j_A Ubiquitin carrier prote 100.0 3.8E-36 1.3E-40 280.7 14.1 119 370-500 3-121 (149)
15 2c2v_B Ubiquitin-conjugating e 100.0 7.3E-36 2.5E-40 280.4 15.9 121 366-498 3-123 (154)
16 2awf_A Ubiquitin-conjugating e 100.0 7.8E-36 2.7E-40 285.4 15.3 129 365-498 14-149 (172)
17 3rcz_B SUMO-conjugating enzyme 100.0 8.3E-36 2.8E-40 283.3 15.1 126 364-499 6-136 (163)
18 2aak_A UBC1, ubiquitin conjuga 100.0 1.1E-35 3.6E-40 278.3 15.5 121 368-500 4-124 (152)
19 1jat_A Ubiquitin-conjugating e 100.0 6.8E-36 2.3E-40 280.7 14.1 121 368-500 5-125 (155)
20 1fxt_A Ubiquitin-conjugating e 100.0 1E-35 3.5E-40 277.5 13.5 143 369-548 2-146 (149)
21 3fn1_B NEDD8-conjugating enzym 100.0 2.1E-35 7.1E-40 280.2 14.1 130 362-498 8-139 (167)
22 1i7k_A Ubiquitin-conjugating e 100.0 3.9E-35 1.3E-39 282.9 15.0 122 365-498 27-148 (179)
23 3bzh_A Ubiquitin-conjugating e 100.0 6.1E-35 2.1E-39 284.7 16.2 121 367-499 47-167 (194)
24 3k9o_A Ubiquitin-conjugating e 100.0 1.2E-34 3.9E-39 282.8 17.7 167 368-553 5-182 (201)
25 2gjd_A Ubiquitin-conjugating e 100.0 6.4E-35 2.2E-39 274.8 14.8 123 368-500 4-131 (157)
26 2bep_A Ubiquitin-conjugating e 100.0 9.5E-35 3.3E-39 273.9 15.7 120 367-498 7-130 (159)
27 2f4z_A Tgtwinscan_2721 - E2 do 100.0 8.2E-35 2.8E-39 283.7 13.6 121 366-498 30-164 (193)
28 1wzv_A Ubiquitin-conjugating e 100.0 1.3E-34 4.4E-39 271.7 14.1 120 368-499 4-124 (155)
29 2grr_A Ubiquitin-conjugating e 100.0 1.9E-34 6.5E-39 272.6 15.2 123 367-499 6-133 (161)
30 3e46_A Ubiquitin-conjugating e 100.0 5.6E-34 1.9E-38 288.1 19.4 176 366-560 55-241 (253)
31 1yrv_A Ubiquitin-conjugating l 100.0 1.6E-34 5.6E-39 276.0 14.2 122 368-499 23-145 (169)
32 2fo3_A Ubiquitin-conjugating e 100.0 5.3E-34 1.8E-38 259.4 14.1 115 368-492 6-121 (125)
33 2h2y_A Ubiquitin-conjugating e 100.0 1.4E-33 4.7E-38 260.6 16.7 115 367-491 19-134 (136)
34 1y8x_A Ubiquitin-conjugating e 100.0 8.9E-34 3E-38 268.2 15.5 118 367-499 5-123 (160)
35 1tte_A Ubiquitin-conjugating e 100.0 5E-34 1.7E-38 282.3 13.2 147 369-534 3-151 (215)
36 1c4z_D UBCH7, ubiquitin conjug 100.0 5.7E-34 2E-38 267.1 12.1 146 369-551 3-149 (154)
37 2y9m_A Ubiquitin-conjugating e 100.0 3E-33 1E-37 267.4 17.2 121 367-498 5-139 (172)
38 2nvu_C NEDD8-conjugating enzym 100.0 2.1E-33 7.3E-38 270.7 14.5 120 364-498 22-142 (180)
39 4ddg_A Ubiquitin-conjugating e 100.0 4.6E-32 1.6E-36 288.6 22.2 168 367-553 2-169 (399)
40 2onu_A Ubiquitin-conjugating e 100.0 8.3E-34 2.8E-38 266.4 7.5 116 369-499 3-120 (152)
41 3o2u_A NEDD8-conjugating enzym 100.0 9.5E-33 3.2E-37 268.2 12.5 120 364-498 25-151 (190)
42 2z5d_A Ubiquitin-conjugating e 100.0 3.9E-33 1.3E-37 269.2 9.7 116 367-498 24-141 (179)
43 2a7l_A Hypothetical ubiquitin- 100.0 9.1E-33 3.1E-37 255.8 10.9 108 370-487 24-135 (136)
44 2a4d_A Ubiquitin-conjugating e 100.0 5.5E-32 1.9E-36 257.0 15.8 129 362-500 19-153 (160)
45 2hlw_A Ubiquitin-conjugating e 100.0 5.1E-32 1.8E-36 259.2 13.9 144 347-500 12-163 (170)
46 2q0v_A Ubiquitin-conjugating e 100.0 8.5E-32 2.9E-36 254.4 15.0 127 361-500 14-147 (156)
47 1yf9_A Ubiquitin carrier prote 100.0 2.5E-32 8.4E-37 261.4 10.0 116 368-499 12-129 (171)
48 2f4w_A Ubiquitin-conjugating e 100.0 3.4E-31 1.2E-35 256.7 16.8 120 364-492 10-129 (187)
49 1jat_B Ubiquitin-conjugating e 100.0 1.7E-31 5.7E-36 246.7 11.5 120 367-499 5-131 (138)
50 4ds2_A Ubiquitin-conjugating e 100.0 1.6E-31 5.6E-36 253.9 10.2 121 368-498 8-143 (167)
51 1zuo_A Hypothetical protein LO 100.0 1.7E-30 5.8E-35 251.8 12.2 121 363-492 22-158 (186)
52 2z6o_A UFM1-conjugating enzyme 99.8 4.1E-22 1.4E-26 190.6 3.9 102 366-480 30-143 (172)
53 3r3q_A Suppressor protein STP2 99.6 2.5E-15 8.4E-20 143.4 9.5 114 371-492 31-159 (162)
54 3kpa_A Probable ubiquitin fold 99.4 3E-14 1E-18 134.4 4.2 85 367-458 33-127 (168)
55 3obq_A Tumor susceptibility ge 99.2 8.5E-11 2.9E-15 110.6 9.8 108 373-494 25-143 (146)
56 2ebm_A RWD domain-containing p 91.2 1.2 4.1E-05 39.4 9.7 68 369-438 11-78 (128)
57 2day_A Ring finger protein 25; 88.9 1.9 6.6E-05 38.1 9.1 68 372-439 12-83 (128)
58 3zqs_A E3 ubiquitin-protein li 87.1 1.4 5E-05 42.9 7.6 86 371-490 4-89 (186)
59 2yz0_A Serine/threonine-protei 85.7 4.1 0.00014 36.5 9.4 70 368-439 10-86 (138)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 80.0 6.2 0.00021 35.1 8.2 70 367-438 9-86 (137)
61 2daw_A RWD domain containing p 66.7 13 0.00045 34.3 7.1 24 416-439 76-99 (154)
62 2ebk_A RWD domain-containing p 63.0 3.8 0.00013 36.3 2.6 66 372-438 11-79 (128)
63 2dax_A Protein C21ORF6; RWD do 59.4 5.4 0.00018 36.6 3.0 24 416-439 74-97 (152)
No 1
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=1.3e-48 Score=406.32 Aligned_cols=259 Identities=38% Similarity=0.710 Sum_probs=221.4
Q ss_pred hhhcccccccCCc--------ccccccc--cccCCCCHHHHHHHHHHHHHHHhCCCC----CeeEEecCCCCceEEEEEE
Q 042246 340 DLFKKFDAVEDHL--------DHHYASK--ASLKQPTNKWAKRIQEEWKILENDLPD----TIFVRVYESRMDLLRAVIV 405 (639)
Q Consensus 340 ~~fk~fd~ve~~s--------dHhy~~~--ss~~~~s~~a~KRL~KELk~Lqk~~P~----gI~Vrp~ednL~~W~avI~ 405 (639)
.+|.+||++.+.+ +|||.+. ......+..+.+||++|++.|++++|. ++++.+.++|++.|+++|.
T Consensus 38 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~ 117 (323)
T 3ceg_A 38 LQFDTFEMVSEDEDGKLGFKVNYHYMSQVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLIT 117 (323)
T ss_dssp TSEEEECCEEECTTSCEEESSCCTTHHHHHTCCCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEE
T ss_pred hcCceeeecccccccccccccchHHHhhhhccCCCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEe
Confidence 3599999887655 4788765 223456789999999999999999886 4668889999999999999
Q ss_pred cCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCC---cccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHH
Q 042246 406 GAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGG---LRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVS 482 (639)
Q Consensus 406 GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~---~IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlS 482 (639)
||+||||+||+|+|+|.||++||++||+|+|.|++ .|||||||.+|+|||++|++|.|...+.|+|++++|.+||++
T Consensus 118 GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLls 197 (323)
T 3ceg_A 118 GPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVS 197 (323)
T ss_dssp BCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHH
T ss_pred CCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHH
Confidence 99999999999999999999999999999999973 499999999999999999999998889999996689999999
Q ss_pred HHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHH-HHHHHhcCCChhhHHHHHHHHhhcHHHHHHHHHHhh
Q 042246 483 IQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLK-TMLYTLRRPPKHFKDFVIGHFYKHAHDILAACKTYM 561 (639)
Q Consensus 483 IQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~k-tm~~~L~kpPk~Fe~~V~~HF~~~a~~Il~~~k~~~ 561 (639)
||+||.+++|++++|+++...+..........|++.++..+++ +|.++|++||..|+++|+.||+.++..|+++|++|+
T Consensus 198 IqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~~~~l~~Pp~~f~~~i~~hF~~~~~~i~~~~~~w~ 277 (323)
T 3ceg_A 198 VQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWI 277 (323)
T ss_dssp HHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTTHHHHHSCCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhhHHHHhCCCcccHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999887666666677889999999999998 899999999999999999999999999999999999
Q ss_pred ccCCccccccCCcccccCCCCCCChHHHHHHHHhHHHHHHHHHhc
Q 042246 562 SGAEVGSLVKGGVQNIHKGLDGCTPHFRTSVAGQVDLLVKEFIRI 606 (639)
Q Consensus 562 ~ga~vg~~~~g~~~~~~~~~~~~s~~Fk~~l~~~~~~Lv~~F~~~ 606 (639)
+++..... +............+|...+..|.++|.++
T Consensus 278 ~e~~~~~~--------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~ 314 (323)
T 3ceg_A 278 ADIQQYSS--------DKRVGRTMSHHAAALKRHTAQLREELLKL 314 (323)
T ss_dssp HHHTTC--------------CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred Hhhhhhcc--------ccccchhhhhHHHHHHHHHHHHHHHHHhc
Confidence 87542210 11111122344577888999999999887
No 2
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.8e-37 Score=292.62 Aligned_cols=164 Identities=28% Similarity=0.527 Sum_probs=134.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccC
Q 042246 365 PTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLN 444 (639)
Q Consensus 365 ~s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfH 444 (639)
++..+.+||++||++|+++++.||+|.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||
T Consensus 1 gs~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~--i~H 78 (169)
T 1yh2_A 1 GSMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTP--IYH 78 (169)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CCB
T ss_pred CchHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecC--Ccc
Confidence 356889999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHH
Q 042246 445 PNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSL 524 (639)
Q Consensus 445 PNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~ 524 (639)
|||+.+|+|||++|++|. .+.|+|++ +|.+||++|++||.+||| ++|.... .+..++.+...|...+
T Consensus 79 PNv~~~G~iCl~iL~~~~---~~~W~p~~-~i~~vL~si~~ll~~p~~--~~p~n~~-------aa~~~~~~~~~y~~~~ 145 (169)
T 1yh2_A 79 PNIDSAGRICLDVLKLPP---KGAWRPSL-NIATVLTSIQLLMSEPNP--DDPLMAD-------ISSEFKYNKPAFLKNA 145 (169)
T ss_dssp TTBCTTCBBCCGGGSCTT---TSCCCTTS-CHHHHHHHHHHHHHSCCT--TSCSCHH-------HHHHHHHCHHHHHHHH
T ss_pred ccCCcCCeEecccccCCc---ccCCCCCC-cHHHHHHHHHHHHhCCCC--cchHhHH-------HHHHHHhhHHHHHHHH
Confidence 999999999999998652 36899996 999999999999999999 8885432 3445556667777776
Q ss_pred H--HHHHHhcCCChhhHHHHH
Q 042246 525 K--TMLYTLRRPPKHFKDFVI 543 (639)
Q Consensus 525 k--tm~~~L~kpPk~Fe~~V~ 543 (639)
+ +..++..++...+++.|+
T Consensus 146 r~~~~~~a~~~~~~~~~~~~~ 166 (169)
T 1yh2_A 146 RQWTEKHARQKQKADEEEMLD 166 (169)
T ss_dssp HHHHHHHSCCC----------
T ss_pred HHHHHHHccccccCCHHHHhh
Confidence 6 444555555556666544
No 3
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=5.5e-37 Score=303.65 Aligned_cols=181 Identities=27% Similarity=0.425 Sum_probs=137.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcc
Q 042246 363 KQPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLR 442 (639)
Q Consensus 363 ~~~s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~I 442 (639)
......+.+||+|||++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |
T Consensus 18 ~~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~--i 95 (216)
T 2pwq_A 18 YFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTK--I 95 (216)
T ss_dssp -CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--C
T ss_pred ccccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCC--C
Confidence 34455789999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cCCCcc-CCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHH
Q 042246 443 LNPNLY-NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFI 521 (639)
Q Consensus 443 fHPNVy-~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~ 521 (639)
|||||+ .+|+|||++|+ +.|+|++ +|.+||++||+||.+||| ++|... ..+..++.+...|.
T Consensus 96 ~HPNI~~~~G~ICL~iL~-------~~WsP~~-ti~~VL~sI~sLL~~Pnp--~dPln~-------eaa~~~~~d~~~f~ 158 (216)
T 2pwq_A 96 WHPNISSQTGAICLDVLK-------NEWSPAL-TIRTALLSIQALLSDPQP--DDPQDA-------EVAKMYKENHALFV 158 (216)
T ss_dssp CBTTBCTTTCBBCCHHHH-------HHCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH-------HHHHHHHHCHHHHH
T ss_pred cCCCCcCCCCEEEchhhc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH-------HHHHHHHHCHHHHH
Confidence 999999 69999999998 6899996 999999999999999999 888543 24566777888999
Q ss_pred HHHHHHHHHhcCCCh------hhHHHHHHHHhhcHHHHHHHHHHhhc
Q 042246 522 LSLKTMLYTLRRPPK------HFKDFVIGHFYKHAHDILAACKTYMS 562 (639)
Q Consensus 522 ~s~ktm~~~L~kpPk------~Fe~~V~~HF~~~a~~Il~~~k~~~~ 562 (639)
.+++.+...+...+. ..++++..+|.+.+...+..|..|-.
T Consensus 159 ~~ar~~t~~ya~~~~~~~~~~~v~~~~~mgf~~~~~~~al~~~~~~~ 205 (216)
T 2pwq_A 159 KTASVWTKTFATGPKEEPREVIIKKITEMGFSEDQAKNALIKANWNE 205 (216)
T ss_dssp HHHHHHHHHHSCCC---------------------------------
T ss_pred HHHHHHHHHhcCCCcccchhhHHHHHHHcCCCHHHHHHHHHHcCCch
Confidence 999866655555443 34555666777777777777777743
No 4
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.1e-36 Score=287.72 Aligned_cols=126 Identities=26% Similarity=0.497 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEEecCC-CCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCC
Q 042246 368 KWAKRIQEEWKILENDLPDTIFVRVYES-RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPN 446 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI~Vrp~ed-nL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 446 (639)
.+++||++||++|+++++.||++.+.++ |++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||||
T Consensus 3 ~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPN 80 (164)
T 3h8k_A 3 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCE--MFHPN 80 (164)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CCCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCC--CccCC
Confidence 6889999999999999999999998765 99999999999999999999999999999999999999999999 99999
Q ss_pred ccCCCceeecCccccCCC------CCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 447 LYNCGKVCLSLLNTWTGN------KNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 447 Vy~~GkVCLSLL~Tw~G~------~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
|+.+|+|||++|++|.++ +.+.|+|++ ||.+||++|++||.+||| ++|.
T Consensus 81 V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~-ti~~vL~~i~~ll~~pn~--~~p~ 135 (164)
T 3h8k_A 81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQ-SVEKILLSVVSMLAEPND--ESGA 135 (164)
T ss_dssp BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTC-CHHHHHHHHHHHHHSCCC--SSCS
T ss_pred CCCCCcEeeecccCcccccccccccccCCCCCC-cHHHHHHHHHHHHcCCCC--CCcc
Confidence 999999999999987543 458999996 999999999999999999 8884
No 5
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-36 Score=287.79 Aligned_cols=127 Identities=28% Similarity=0.548 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeeEEecC-CCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCC
Q 042246 367 NKWAKRIQEEWKILENDLPDTIFVRVYE-SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNP 445 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~~P~gI~Vrp~e-dnL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHP 445 (639)
..+.+||+||+++|+++++.||++.+.+ +|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 80 (165)
T 2ucz_A 3 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS--ILHP 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CSCT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCC--CccC
Confidence 4688999999999999999999999864 799999999999999999999999999999999999999999999 9999
Q ss_pred CccCCCceeecCccccCCC------CCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 446 NLYNCGKVCLSLLNTWTGN------KNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 446 NVy~~GkVCLSLL~Tw~G~------~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
|||.+|+|||++|++|+++ +.+.|+|++ +|.+||++|++||.+||| ++|.
T Consensus 81 Nv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~-~i~~vL~si~~ll~~Pn~--~~p~ 136 (165)
T 2ucz_A 81 NIYPNGEVCISILHSPGDDPNMYELAEERWSPVQ-SVEKILLSVMSMLSEPNI--ESGA 136 (165)
T ss_dssp TBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTC-CHHHHHHHHHHHHHSCCG--GGCC
T ss_pred CCCCCCcEeehhhCCccccccccCCCCCCCCCcC-cHHHHHHHHHHHHhCCCC--CCch
Confidence 9999999999999876432 368999996 999999999999999998 8884
No 6
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-36 Score=288.49 Aligned_cols=123 Identities=33% Similarity=0.647 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCccc
Q 042246 364 QPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRL 443 (639)
Q Consensus 364 ~~s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~If 443 (639)
.....+.+||++|+++|+++++.||.|.+.++|++.|+++|.||+||||+||+|.|+|.||++||++||+|+|.|+ ||
T Consensus 17 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i~ 94 (166)
T 2ayv_A 17 LYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTK--IY 94 (166)
T ss_dssp --CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CC
T ss_pred ccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccC--Cc
Confidence 4445688999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 444 NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 444 HPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
||||+.+|+|||++|+ +.|+|++ +|.+||++|++||.+||| ++|.
T Consensus 95 HPNI~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~sll~~pn~--~~Pl 139 (166)
T 2ayv_A 95 HPNINSQGAICLDILK-------DQWSPAL-TISKVLLSISSLLTDPNP--DDPL 139 (166)
T ss_dssp BTTBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCS
T ss_pred CCcCCCCCeEEccccc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--Cchh
Confidence 9999999999999998 7999996 999999999999999999 8884
No 7
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=5.4e-36 Score=288.84 Aligned_cols=159 Identities=24% Similarity=0.415 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCeeEE-ecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCccc
Q 042246 365 PTNKWAKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRL 443 (639)
Q Consensus 365 ~s~~a~KRL~KELk~Lqk~~P~gI~Vr-p~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~If 443 (639)
++..+.|||++||++|+++++.||++. +.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||
T Consensus 4 ~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~ 81 (183)
T 3rz3_A 4 GSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK--MW 81 (183)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CC
T ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCC--Cc
Confidence 445789999999999999999999999 678899999999999999999999999999999999999999999999 99
Q ss_pred CCCccCCCceeecCccccCCC------CCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccH
Q 042246 444 NPNLYNCGKVCLSLLNTWTGN------KNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNE 517 (639)
Q Consensus 444 HPNVy~~GkVCLSLL~Tw~G~------~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne 517 (639)
|||||.+|+|||++|.+|.++ ..+.|+|++ +|.+||++|++||.+||| ++|.... +
T Consensus 82 HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~-~i~~vL~si~~ll~~Pn~--~~p~n~~----a----------- 143 (183)
T 3rz3_A 82 HPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQ-NVRTILLSVISLLNEPNT--FSPANVD----A----------- 143 (183)
T ss_dssp CTTBCTTSBBCCTTC--------------CCCCTTC-CHHHHHHHHHHHHHSCCC--SSCSSHH----H-----------
T ss_pred cCCCCCCCcEehhhcCcccccccccccccCCCCCcC-cHHHHHHHHHHHHhCCCC--CCcccHH----H-----------
Confidence 999999999999999875433 348999996 999999999999999999 8884221 1
Q ss_pred HHHHHHHHHHHHHhcC------CChhhHHHHHHHHhhcHHHH
Q 042246 518 STFILSLKTMLYTLRR------PPKHFKDFVIGHFYKHAHDI 553 (639)
Q Consensus 518 ~~f~~s~ktm~~~L~k------pPk~Fe~~V~~HF~~~a~~I 553 (639)
..++++ .++.|++.|++...+....+
T Consensus 144 ----------a~~~~~~~~~~~~~~~y~~~v~~~v~~s~~~~ 175 (183)
T 3rz3_A 144 ----------SVMYRKWKESKGKDREYTDIIRKQVLGTKVDA 175 (183)
T ss_dssp ----------HHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 122222 56788888887777666654
No 8
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=2.7e-36 Score=281.72 Aligned_cols=122 Identities=32% Similarity=0.638 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCC
Q 042246 366 TNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNP 445 (639)
Q Consensus 366 s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHP 445 (639)
+..+.+||++|+++|+++++.||.+.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 79 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR--IYHP 79 (150)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecC--cccC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCc
Q 042246 446 NLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGY 499 (639)
Q Consensus 446 NVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~ 499 (639)
||+.+|+|||++|+ +.|+|++ +|.+||++|++||.+||| ++|..
T Consensus 80 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~pn~--~~p~n 123 (150)
T 1z2u_A 80 NINSNGSICLDILR-------SQWSPAL-TISKVLLSICSLLCDPNP--DDPLV 123 (150)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSC
T ss_pred cCCCCCeEeecccc-------CCCCCCC-CHHHHHHHHHHHhhCCCC--CCccC
Confidence 99999999999998 7999995 999999999999999999 88853
No 9
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-36 Score=285.12 Aligned_cols=125 Identities=27% Similarity=0.559 Sum_probs=118.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCc
Q 042246 362 LKQPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGL 441 (639)
Q Consensus 362 ~~~~s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~ 441 (639)
....+..+.+||++|+++|+++++.||+|.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+
T Consensus 7 ~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~-- 84 (158)
T 1zdn_A 7 VENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTK-- 84 (158)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccC--
Confidence 345678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 442 RLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 442 IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
||||||+.+|+|||++|. +.|+|++ +|.+||++|++||.+||| ++|.
T Consensus 85 i~HPnv~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~pn~--~~p~ 131 (158)
T 1zdn_A 85 IFHPNVGANGEICVNVLK-------RDWTAEL-GIRHVLLTIKCLLIHPNP--ESAL 131 (158)
T ss_dssp CCCTTBCTTSBBCHHHHT-------TTCCTTC-CHHHHHHHHHHHHHSCCG--GGCS
T ss_pred cccCCCCCCCEEehhhcC-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcc
Confidence 999999999999999998 7999995 999999999999999999 7884
No 10
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3.9e-36 Score=287.00 Aligned_cols=147 Identities=27% Similarity=0.525 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCc
Q 042246 368 KWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNL 447 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 447 (639)
.+.+||++||++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 4 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~--i~HPNI 81 (169)
T 1ayz_A 4 PARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE--MFHPNV 81 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCCTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccC--CccCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHHHH
Q 042246 448 YNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLKTM 527 (639)
Q Consensus 448 y~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~ktm 527 (639)
+.+|+|||++|. +.|+|++ +|.+||++|++||.+||| ++|+... +
T Consensus 82 ~~~G~ICl~iL~-------~~WsP~~-~i~~vL~si~~ll~~Pn~--~~P~n~~-------------------------a 126 (169)
T 1ayz_A 82 YANGEICLDILQ-------NRWTPTY-DVASILTSIQSLFNDPNP--ASPANVE-------------------------A 126 (169)
T ss_dssp CTTSBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHTCCCC--SSCSSHH-------------------------H
T ss_pred CCCCeEeehhhc-------cCCCCcC-cHHHHHHHHHHHHhCCCC--CcHHHHH-------------------------H
Confidence 999999999998 7899996 999999999999999998 8885432 1
Q ss_pred HHHhcCCChhhHHHHHHHHhhcHH
Q 042246 528 LYTLRRPPKHFKDFVIGHFYKHAH 551 (639)
Q Consensus 528 ~~~L~kpPk~Fe~~V~~HF~~~a~ 551 (639)
+.++++.++.|++.|+++.+++|.
T Consensus 127 a~~~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 127 ATLFKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHcC
Confidence 334455667788777766665554
No 11
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=5.7e-36 Score=284.68 Aligned_cols=128 Identities=31% Similarity=0.614 Sum_probs=118.2
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccC
Q 042246 360 ASLKQPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSG 439 (639)
Q Consensus 360 ss~~~~s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~ 439 (639)
+........+.+||++|+++|+++++.||++.+.++|++.|+++|.||+||||+||+|.|+|.||++||++||+|+|.|+
T Consensus 11 ~~~~~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~ 90 (165)
T 2c4o_A 11 SGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 90 (165)
T ss_dssp -----CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred cccccCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecC
Confidence 33456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCc
Q 042246 440 GLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGY 499 (639)
Q Consensus 440 ~~IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~ 499 (639)
||||||+.+|+|||++|+ +.|+|++ +|.+||++|++||.+||| ++|..
T Consensus 91 --i~HPnV~~~G~ICl~iL~-------~~W~P~~-ti~~vL~si~~ll~~pn~--~~P~n 138 (165)
T 2c4o_A 91 --IYHPNINSNGSICLDILR-------SQWSPAL-TISKVLLSICSLLCDPNP--DDPLV 138 (165)
T ss_dssp --CCBTTBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSS
T ss_pred --CcCCcCCCCCeEeehhhc-------CCCCCcC-cHHHHHHHHHHHHhCCCC--Ccccc
Confidence 999999999999999998 7999995 999999999999999999 88853
No 12
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1.6e-35 Score=277.01 Aligned_cols=121 Identities=32% Similarity=0.644 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCC
Q 042246 366 TNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNP 445 (639)
Q Consensus 366 s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHP 445 (639)
+..+.+||++|+++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HP 79 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTK--VYHP 79 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecC--cccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 446 NLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 446 NVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
||+.+|+|||++|. +.|+|++ +|.+||++|++||.+||| ++|.
T Consensus 80 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~ 122 (151)
T 4gpr_A 80 NINKNGVICLDILK-------DQWSPAL-TLSRVLLSISSLLTDPNP--SDPL 122 (151)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHCCCT--TSCS
T ss_pred eECCCCEEEccccc-------CCCCCCC-cHHHHHHHHHHHhcCCCC--CCch
Confidence 99999999999998 7999996 999999999999999999 8884
No 13
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=9.4e-36 Score=279.94 Aligned_cols=147 Identities=22% Similarity=0.351 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCC
Q 042246 366 TNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNP 445 (639)
Q Consensus 366 s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHP 445 (639)
+..+.+||++|+++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||
T Consensus 7 ~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 84 (156)
T 2e2c_A 7 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTP--CWHP 84 (156)
T ss_dssp CCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC--cccC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHH
Q 042246 446 NLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLK 525 (639)
Q Consensus 446 NVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~k 525 (639)
||+.+|+|||++|. +.|+|++ +|.+||++|++||.+||| ++|....
T Consensus 85 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vL~si~~ll~~pn~--~~p~n~~------------------------ 130 (156)
T 2e2c_A 85 NVDQSGNICLDILK-------ENWTASY-DVRTILLSLQSLLGEPNN--ASPLNAQ------------------------ 130 (156)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHTTSCCC--SSCSCHH------------------------
T ss_pred CCccCceEECcccc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCHHHHH------------------------
Confidence 99999999999998 7899996 999999999999999999 8885332
Q ss_pred HHHHHhcCCChhhHHHHHHHHhhcH
Q 042246 526 TMLYTLRRPPKHFKDFVIGHFYKHA 550 (639)
Q Consensus 526 tm~~~L~kpPk~Fe~~V~~HF~~~a 550 (639)
++.++ +.++.|++.|+++.++++
T Consensus 131 -aa~~~-~d~~~y~~~~~~~~~~~~ 153 (156)
T 2e2c_A 131 -AADMW-SNQTEYKKVLHEKYKTAQ 153 (156)
T ss_dssp -HHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred -HHHHh-cCHHHHHHHHHHHHHHhc
Confidence 13334 566777777666655544
No 14
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=3.8e-36 Score=280.69 Aligned_cols=119 Identities=33% Similarity=0.680 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCccC
Q 042246 370 AKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYN 449 (639)
Q Consensus 370 ~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~ 449 (639)
.+||++|+++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||+.
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPnv~~ 80 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTK--IYHPNIDK 80 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSC--CCBTTBCT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccC--CccCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcc
Q 042246 450 CGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYA 500 (639)
Q Consensus 450 ~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e 500 (639)
+|+|||++|+ +.|+|++ +|.+||++|++||.+||| ++|...
T Consensus 81 ~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~ 121 (149)
T 2r0j_A 81 LGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSSPEP--DDPLDS 121 (149)
T ss_dssp TCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHHHSCCT--TSCSSC
T ss_pred CCEEechhcC-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCchhH
Confidence 9999999998 7999996 999999999999999999 888543
No 15
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.3e-36 Score=280.43 Aligned_cols=121 Identities=31% Similarity=0.600 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCC
Q 042246 366 TNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNP 445 (639)
Q Consensus 366 s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHP 445 (639)
+..+.+||++|+++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||
T Consensus 3 s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 80 (154)
T 2c2v_B 3 SAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK--IYHP 80 (154)
T ss_dssp SCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CCCT
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecC--cccC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 446 NLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 446 NVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
||+.+|+|||++|+ +.|+|++ +|.+||++|++||.+||| ++|.
T Consensus 81 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~pn~--~~p~ 123 (154)
T 2c2v_B 81 NVDKLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSAPNP--DDPL 123 (154)
T ss_dssp TBCTTCBBCCHHHH-------TSCCTTC-CHHHHHHHHHHHTTSCCC--CCC-
T ss_pred cCccCCeEEchhcc-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcc
Confidence 99999999999998 7999986 999999999999999999 8884
No 16
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=7.8e-36 Score=285.43 Aligned_cols=129 Identities=20% Similarity=0.446 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCeeEEecC-CCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCccc
Q 042246 365 PTNKWAKRIQEEWKILENDLPDTIFVRVYE-SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRL 443 (639)
Q Consensus 365 ~s~~a~KRL~KELk~Lqk~~P~gI~Vrp~e-dnL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~If 443 (639)
.+..+.+||+|||++|+++++.||++.+.+ +|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||
T Consensus 14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~--i~ 91 (172)
T 2awf_A 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE--IW 91 (172)
T ss_dssp CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CC
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCC--Cc
Confidence 456788999999999999999999999865 799999999999999999999999999999999999999999999 99
Q ss_pred CCCccCCCceeecCccccCC------CCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 444 NPNLYNCGKVCLSLLNTWTG------NKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 444 HPNVy~~GkVCLSLL~Tw~G------~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
|||||.+|+|||++|++|.+ ...+.|+|++ +|.+||++||+||.+||| ++|.
T Consensus 92 HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~-ti~~vL~sI~sll~~Pn~--~~p~ 149 (172)
T 2awf_A 92 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIH-TVETIMISVISMLADPNG--DSPA 149 (172)
T ss_dssp CTTBCTTCBBCCGGGSCC---------CTTSCCTTC-CHHHHHHHHHHHHSCC--------
T ss_pred cCCCCCCCcEehhhcCCcccccccccccCCCCCCcC-cHHHHHHHHHHHHHCcCC--CCcc
Confidence 99999999999999987532 2357999996 999999999999999888 8884
No 17
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=8.3e-36 Score=283.25 Aligned_cols=126 Identities=31% Similarity=0.575 Sum_probs=116.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeeEEecCC-----CCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeecc
Q 042246 364 QPTNKWAKRIQEEWKILENDLPDTIFVRVYES-----RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHS 438 (639)
Q Consensus 364 ~~s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ed-----nL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T 438 (639)
+++..+.+||+||+++|++++|.||++.+.++ |++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|
T Consensus 6 ~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t 85 (163)
T 3rcz_B 6 HHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP 85 (163)
T ss_dssp ---CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence 46778999999999999999999999998876 9999999999999999999999999999999999999999999
Q ss_pred CCcccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCc
Q 042246 439 GGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGY 499 (639)
Q Consensus 439 ~~~IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~ 499 (639)
+ ||||||+.+|+|||++|+. .++|+|++ +|.+||++|++||.+||| ++|..
T Consensus 86 ~--i~HPnV~~~G~iCl~iL~~-----~~~W~p~~-ti~~vL~~i~~ll~~P~~--~~p~n 136 (163)
T 3rcz_B 86 P--LFHPNVYPSGTVCLSILNE-----EEGWKPAI-TIKQILLGIQDLLDDPNI--ASPAQ 136 (163)
T ss_dssp C--CCSTTBCTTSBBCCGGGCT-----TTTCCTTC-CHHHHHHHHHHHHTSCCT--TSCSC
T ss_pred C--CccCCCCCCCcEeccccCC-----CCCcCCcC-cHHHHHHHHHHHHhCCCC--CCccC
Confidence 9 9999999999999999983 25799996 999999999999999998 88853
No 18
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.1e-35 Score=278.25 Aligned_cols=121 Identities=34% Similarity=0.657 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCc
Q 042246 368 KWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNL 447 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 447 (639)
.+.+||++|+++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 4 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPnv 81 (152)
T 2aak_A 4 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSR--MFHPNI 81 (152)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCCTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecC--cccCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcc
Q 042246 448 YNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYA 500 (639)
Q Consensus 448 y~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e 500 (639)
+.+|+|||++|. +.|+|++ +|.+||++|++||.+||| ++|+..
T Consensus 82 ~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~ 124 (152)
T 2aak_A 82 YADGSICLDILQ-------NQWSPIY-DVAAILTSIQSLLCDPNP--NSPANS 124 (152)
T ss_dssp CTTSBBCCGGGT-------TSCCTTC-CHHHHHHHHHHHHTSCCT--TSCSSH
T ss_pred CCCCEEechhhc-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CccccH
Confidence 999999999998 7899996 999999999999999998 899543
No 19
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=6.8e-36 Score=280.65 Aligned_cols=121 Identities=31% Similarity=0.616 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCc
Q 042246 368 KWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNL 447 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 447 (639)
.+.+||++|+++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPnv 82 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK--IYHPNI 82 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSC--CCBTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecc--cccCCC
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcc
Q 042246 448 YNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYA 500 (639)
Q Consensus 448 y~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e 500 (639)
|.+|+|||++|. +.|+|++ +|.+||++|++||.+||| ++|...
T Consensus 83 ~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~ 125 (155)
T 1jat_A 83 DRLGRICLDVLK-------TNWSPAL-QIRTVLLSIQALLASPNP--NDPLAN 125 (155)
T ss_dssp CTTCCBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSTTCC
T ss_pred CCCCEEEchhhc-------cCCCCCC-CHHHHHHHHHHHHhCCCC--CCcccH
Confidence 999999999997 7999996 999999999999999999 888544
No 20
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1e-35 Score=277.52 Aligned_cols=143 Identities=29% Similarity=0.540 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHhCCCCCeeEEecCC-CCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCc
Q 042246 369 WAKRIQEEWKILENDLPDTIFVRVYES-RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNL 447 (639)
Q Consensus 369 a~KRL~KELk~Lqk~~P~gI~Vrp~ed-nL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 447 (639)
+.+||++|+++|+++++.||++.+.++ |++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPni 79 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK--VYHPNI 79 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSC--CCBTTB
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC--CccCCC
Confidence 469999999999999999999999887 99999999999999999999999999999999999999999999 999999
Q ss_pred cC-CCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHHH
Q 042246 448 YN-CGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLKT 526 (639)
Q Consensus 448 y~-~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~kt 526 (639)
+. +|+|||++|. +.|+|++ +|.+||++|++||.+||| ++|....
T Consensus 80 ~~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~------------------------- 124 (149)
T 1fxt_A 80 SSVTGAICLDILK-------NAWSPVI-TLKSALISLQALLQSPEP--NDPQDAE------------------------- 124 (149)
T ss_dssp CSSSCCBCCHHHH-------TSCCTTC-CHHHHHHHHHHHHHSCCS--SSCSSHH-------------------------
T ss_pred cCCCCeEeCCcCC-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcccHH-------------------------
Confidence 97 9999999998 7999996 999999999999999999 8884321
Q ss_pred HHHHhcCCChhhHHHHHHHHhh
Q 042246 527 MLYTLRRPPKHFKDFVIGHFYK 548 (639)
Q Consensus 527 m~~~L~kpPk~Fe~~V~~HF~~ 548 (639)
++.++++.++.|++.+++..++
T Consensus 125 aa~~~~~d~~~f~~~a~~~~~~ 146 (149)
T 1fxt_A 125 VAQHYLRDRESFNKTAALWTRL 146 (149)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHH
Confidence 1344556677787776665544
No 21
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=2.1e-35 Score=280.15 Aligned_cols=130 Identities=25% Similarity=0.420 Sum_probs=119.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHhCCCCCeeEEe-cCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCC
Q 042246 362 LKQPTNKWAKRIQEEWKILENDLPDTIFVRV-YESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGG 440 (639)
Q Consensus 362 ~~~~s~~a~KRL~KELk~Lqk~~P~gI~Vrp-~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~ 440 (639)
.......+.+||++||++|+++++.||+|.+ .+++++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus 8 ~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~- 85 (167)
T 3fn1_B 8 STRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTK- 85 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSC-
T ss_pred CccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCC-
Confidence 3456678999999999999999999999985 567899999998 9999999999999999999999999999999999
Q ss_pred cccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhc-CCCCCCCCC
Q 042246 441 LRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN-QKPYFNEPG 498 (639)
Q Consensus 441 ~IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~-pnPyfnEPg 498 (639)
||||||+.+|+|||++|++| |...+.|+|++ +|.+||++|++||.+ ||| ++|.
T Consensus 86 -i~HPnv~~~G~iCl~iL~~~-~~~~~~W~p~~-~i~~vl~~i~~ll~~~pn~--~~p~ 139 (167)
T 3fn1_B 86 -IWHPNITETGEICLSLLREH-SIDGTGWAPTR-TLKDVVWGLNSLFTDLLNF--DDPL 139 (167)
T ss_dssp -CCCSSBCTTCCBCCGGGSBC-SSSTTSBCTTC-CHHHHHHHHHHTTTTTCCS--SSCS
T ss_pred -cccCCCCCCCEEechhhccC-CCCCCCCCCcC-cHHHHHHHHHHHHcCCCCC--Ccch
Confidence 99999999999999999987 55568999995 999999999999999 688 8884
No 22
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.9e-35 Score=282.88 Aligned_cols=122 Identities=28% Similarity=0.377 Sum_probs=115.2
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccC
Q 042246 365 PTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLN 444 (639)
Q Consensus 365 ~s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfH 444 (639)
.+..+.+||++||++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i~H 104 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTP--CYH 104 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSC--CCS
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecC--Ccc
Confidence 356789999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 445 PNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 445 PNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
|||+.+|+|||++|. +.|+|++ +|.+||++|++||.+||| ++|.
T Consensus 105 PNV~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~sll~~Pn~--~~Pl 148 (179)
T 1i7k_A 105 PNVDTQGNISLDILK-------EKWSALY-DVRTILLSIQSLLGEPNI--DSPL 148 (179)
T ss_dssp TTBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCS
T ss_pred CccccCCeEEcccCc-------CcCCCCC-CHHHHHHHHHHHHhCCCC--cchh
Confidence 999999999999998 7899996 999999999999999999 8884
No 23
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=6.1e-35 Score=284.68 Aligned_cols=121 Identities=31% Similarity=0.580 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCC
Q 042246 367 NKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPN 446 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 446 (639)
..+.+||++||++|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||||
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i~HPN 124 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTR--IYHCN 124 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCBTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCC--Cccce
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCc
Q 042246 447 LYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGY 499 (639)
Q Consensus 447 Vy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~ 499 (639)
||.+|+|||++|. +.|+|++ +|.+||++|++||.+||| ++|..
T Consensus 125 V~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~~ll~~pnp--~~Pln 167 (194)
T 3bzh_A 125 INSQGVICLDILK-------DNWSPAL-TISKVLLSICSLLTDCNP--ADPLV 167 (194)
T ss_dssp BCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSC
T ss_pred ECCCCceechhhh-------ccCCCcC-cHHHHHHHHHHHHhCCCC--ccchh
Confidence 9999999999998 7999996 999999999999999999 78843
No 24
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=1.2e-34 Score=282.85 Aligned_cols=167 Identities=26% Similarity=0.458 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHhC---CCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccC
Q 042246 368 KWAKRIQEEWKILEND---LPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLN 444 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~---~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfH 444 (639)
.+.+||+||+++|+++ ++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||
T Consensus 5 ~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~H 82 (201)
T 3k9o_A 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK--IWH 82 (201)
T ss_dssp TTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCB
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC--ccc
Confidence 4689999999999987 36899999999999999999999999999999999999999999999999999999 999
Q ss_pred CCcc-CCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHH
Q 042246 445 PNLY-NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILS 523 (639)
Q Consensus 445 PNVy-~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s 523 (639)
|||+ .+|+|||++|. +.|+|++ +|.+||++||+||.+||| ++|... ..++.++.+...|..+
T Consensus 83 Pnv~~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~p~p--~~p~n~-------~aa~~~~~~~~~f~~~ 145 (201)
T 3k9o_A 83 PNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALLAAAEP--DDPQDA-------VVANQYKQNPEMFKQT 145 (201)
T ss_dssp TTBCTTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH-------HHHHHHHHCHHHHHHH
T ss_pred CCCcCCCCeeeCcccc-------cCCCCCC-CHHHHHHHHHHHhcCCCC--CCcccH-------HHHHHHHHCHHHHHHH
Confidence 9999 69999999997 7999996 999999999999999999 888533 3466788889999999
Q ss_pred HHHHHHHhcCCCh---hhHHHHH----HHHhhcHHHH
Q 042246 524 LKTMLYTLRRPPK---HFKDFVI----GHFYKHAHDI 553 (639)
Q Consensus 524 ~ktm~~~L~kpPk---~Fe~~V~----~HF~~~a~~I 553 (639)
++.+...+...|. .|++.|+ .+|.+.....
T Consensus 146 a~~~~~~~a~~~~~~~~~eekV~~l~~MGf~~~~a~~ 182 (201)
T 3k9o_A 146 ARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIV 182 (201)
T ss_dssp HHHHHHHHHCCCCCCHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHcCCCHHHHHH
Confidence 9855544444432 4555554 3555544433
No 25
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=6.4e-35 Score=274.81 Aligned_cols=123 Identities=33% Similarity=0.651 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEEecC-----CCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcc
Q 042246 368 KWAKRIQEEWKILENDLPDTIFVRVYE-----SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLR 442 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI~Vrp~e-----dnL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~I 442 (639)
.+.+||++|+++|+++++.||++.+.+ +|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |
T Consensus 4 ~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i 81 (157)
T 2gjd_A 4 LCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG--F 81 (157)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT--C
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC--C
Confidence 578999999999999999999999875 489999999999999999999999999999999999999999999 9
Q ss_pred cCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcc
Q 042246 443 LNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYA 500 (639)
Q Consensus 443 fHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e 500 (639)
|||||+.+|+|||++|+. .+.|+|++ +|.+||++|++||.+||| ++|...
T Consensus 82 ~HPnv~~~G~iCl~iL~~-----~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~ 131 (157)
T 2gjd_A 82 YHPNVYPSGTICLSILNE-----DQDWRPAI-TLKQIVLGVQDLLDSPNP--NSPAQE 131 (157)
T ss_dssp CCTTBCTTSBBCCGGGCT-----TTTCCTTC-CHHHHHHHHHHHHTSCCT--TCCCCH
T ss_pred ccCCCCCCCcEeeecccC-----CCCCCCCC-cHHHHHHHHHHHHhCCCC--CCccCH
Confidence 999999999999999983 24899995 999999999999999888 888543
No 26
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=9.5e-35 Score=273.89 Aligned_cols=120 Identities=32% Similarity=0.622 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHhC---CCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCccc
Q 042246 367 NKWAKRIQEEWKILEND---LPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRL 443 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~---~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~If 443 (639)
..+.+||+||+++|+++ ++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||
T Consensus 7 ~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~ 84 (159)
T 2bep_A 7 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK--IW 84 (159)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCC--CC
Confidence 46889999999999985 57899999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCcc-CCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 444 NPNLY-NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 444 HPNVy-~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
||||+ .+|+|||++|+ +.|+|++ +|.+||++||+||.+||| ++|.
T Consensus 85 HPni~~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~ 130 (159)
T 2bep_A 85 HPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALLAAAEP--DDPQ 130 (159)
T ss_dssp BTTBCTTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCS
T ss_pred ccCCCCCCCEEeChhhh-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCcc
Confidence 99999 69999999998 6899996 999999999999999999 8884
No 27
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=8.2e-35 Score=283.66 Aligned_cols=121 Identities=28% Similarity=0.592 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHHHHhCCC-------------CCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCC
Q 042246 366 TNKWAKRIQEEWKILENDLP-------------DTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPP 432 (639)
Q Consensus 366 s~~a~KRL~KELk~Lqk~~P-------------~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PP 432 (639)
+..+.+||+|||++|+++++ .||+|.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||
T Consensus 30 ~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP 109 (193)
T 2f4z_A 30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP 109 (193)
T ss_dssp --CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC
Confidence 34688999999999999987 79999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCcccCCCcc-CCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 433 NVYYHSGGLRLNPNLY-NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 433 kV~F~T~~~IfHPNVy-~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
+|+|.|+ ||||||+ .+|+|||++|+ +.|+|++ +|.+||++||+||.+||| ++|.
T Consensus 110 ~V~F~T~--i~HPNI~~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~sll~~pnp--~~P~ 164 (193)
T 2f4z_A 110 KMKFVTK--IWHPNISSQTGAICLDILK-------HEWSPAL-TIRTALLSIQAMLADPVP--TDPQ 164 (193)
T ss_dssp EEEESSC--CCBTTBCTTTCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHHHSCCT--TSCS
T ss_pred eEEEecC--CccCCCcCCCCEEECcccc-------ccCCCCC-CHHHHHHHHHHHHhCCCC--CCcc
Confidence 9999999 9999999 69999999998 6899996 999999999999999999 8884
No 28
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=1.3e-34 Score=271.74 Aligned_cols=120 Identities=24% Similarity=0.472 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeE-EecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCC
Q 042246 368 KWAKRIQEEWKILENDLPDTIFV-RVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPN 446 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI~V-rp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 446 (639)
.+.+||++|+++|+++++.||.+ .++++|++.|+++|. |+||||+||+|+|+|.||++||++||+|+|.|+ |||||
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPn 80 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTK--IYHPN 80 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSC--CCBTT
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCC--CccCc
Confidence 46799999999999999999999 788999999999999 999999999999999999999999999999999 99999
Q ss_pred ccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCc
Q 042246 447 LYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGY 499 (639)
Q Consensus 447 Vy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~ 499 (639)
|+.+|+|||++|+ .+.|+|++ +|.+||++|++||.+||| ++|..
T Consensus 81 V~~~G~iCl~iL~------~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n 124 (155)
T 1wzv_A 81 VDENGQICLPIIS------SENWKPCT-KTCQVLEALNVLVNRPNI--REPLR 124 (155)
T ss_dssp BCTTCBCCCGGGC------TTTCCTTC-CHHHHHHHHHHHHHSCCS--SSCSS
T ss_pred CCCCCeEeecCCC------ccCCCCCC-cHHHHHHHHHHHHhCCCC--CchHH
Confidence 9999999999994 27999996 999999999999999998 88853
No 29
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.9e-34 Score=272.57 Aligned_cols=123 Identities=29% Similarity=0.572 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeeEEecC-----CCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCc
Q 042246 367 NKWAKRIQEEWKILENDLPDTIFVRVYE-----SRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGL 441 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~~P~gI~Vrp~e-----dnL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~ 441 (639)
..+.+||++|+++|+++++.||.+.+.+ +|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+
T Consensus 6 ~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~-- 83 (161)
T 2grr_A 6 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP-- 83 (161)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC--
Confidence 4688999999999999999999998764 689999999999999999999999999999999999999999999
Q ss_pred ccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCc
Q 042246 442 RLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGY 499 (639)
Q Consensus 442 IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~ 499 (639)
||||||+.+|+|||++|+. .+.|+|++ +|.+||++|++||.+||+ ++|..
T Consensus 84 i~HPnv~~~G~iCl~iL~~-----~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n 133 (161)
T 2grr_A 84 LFHPNVYPSGTVCLSILEE-----DKDWRPAI-TIKQILLGIQELLNEPNI--QSPAQ 133 (161)
T ss_dssp CCSTTBCTTSBBCCGGGCT-----TTTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSC
T ss_pred cccCCCCCCCeEeehhcCC-----CCCcCCCC-cHHHHHHHHHHHHhCCCC--CCccC
Confidence 9999999999999999983 25899996 999999999999999888 88853
No 30
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=5.6e-34 Score=288.11 Aligned_cols=176 Identities=26% Similarity=0.469 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHHHHHHhC---CCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcc
Q 042246 366 TNKWAKRIQEEWKILEND---LPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLR 442 (639)
Q Consensus 366 s~~a~KRL~KELk~Lqk~---~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~I 442 (639)
+..+.+||+|||++|+++ ++.||+|.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |
T Consensus 55 s~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i 132 (253)
T 3e46_A 55 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK--I 132 (253)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--C
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCC--C
Confidence 468899999999999987 47899999999999999999999999999999999999999999999999999999 9
Q ss_pred cCCCcc-CCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHH
Q 042246 443 LNPNLY-NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFI 521 (639)
Q Consensus 443 fHPNVy-~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~ 521 (639)
|||||+ .+|+|||++|. +.|+|++ +|.+||++|++||.+||| ++|... ..++.++.+...|.
T Consensus 133 ~HPNV~~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~~ll~~pnp--~~Pln~-------eaa~l~~~d~~~f~ 195 (253)
T 3e46_A 133 WHPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALLAAAEP--DDPQDA-------VVANQYKQNPEMFK 195 (253)
T ss_dssp CBTTBCTTTCBBCCGGGT-------TCCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH-------HHHHHHHHCHHHHH
T ss_pred ccCCccCCCCeeeccccc-------CCCCCCC-CHHHHHHHHHHHhcCCCC--CChhhH-------HHHHHHHHCHHHHH
Confidence 999999 69999999997 7999996 999999999999999999 888533 34667888999999
Q ss_pred HHHHHHHHHhcCCCh---hhHHHH----HHHHhhcHHHHHHHHHHh
Q 042246 522 LSLKTMLYTLRRPPK---HFKDFV----IGHFYKHAHDILAACKTY 560 (639)
Q Consensus 522 ~s~ktm~~~L~kpPk---~Fe~~V----~~HF~~~a~~Il~~~k~~ 560 (639)
.+++.+...+...|. .|++.| ..+|.+.+...+..+..|
T Consensus 196 ~~ar~~t~~yA~~~~~~~~~~~~v~~l~~mgf~~~~~~~al~~~nW 241 (253)
T 3e46_A 196 QTARLWAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVIVALSSKSW 241 (253)
T ss_dssp HHHHHHHHHHHCCSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcccccCcchHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 999955555554443 444444 346666555544444445
No 31
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-34 Score=275.96 Aligned_cols=122 Identities=21% Similarity=0.380 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCc
Q 042246 368 KWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNL 447 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 447 (639)
.+.+||+||+++|+++++.||.+.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 23 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i~HPNI 100 (169)
T 1yrv_A 23 RAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI--PFHPNV 100 (169)
T ss_dssp HHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC--CCCTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCC--CccCcc
Confidence 688999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred -cCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCc
Q 042246 448 -YNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGY 499 (639)
Q Consensus 448 -y~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~ 499 (639)
+.+|+|||++|++ .+.|+|++ +|.+||++||+||.+||| ++|..
T Consensus 101 ~~~~G~ICL~iL~~-----~~~WsP~~-ti~~vL~sI~sll~~Pn~--~~Pln 145 (169)
T 1yrv_A 101 DPHTGQPCIDFLDN-----PEKWNTNY-TLSSILLALQVMLSNPVL--ENPVN 145 (169)
T ss_dssp CTTTCCBCCHHHHC-----GGGCCTTC-CHHHHHHHHHHHHTSCCT--TSCSC
T ss_pred cCCCCeEeehhhcC-----CcCCCCcC-CHHHHHHHHHHHHhCCCC--CCchh
Confidence 8999999999972 36899996 999999999999999998 88853
No 32
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=5.3e-34 Score=259.45 Aligned_cols=115 Identities=27% Similarity=0.517 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcc-cCCC
Q 042246 368 KWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLR-LNPN 446 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~I-fHPN 446 (639)
.+.+||+||+++|+++++.||++.+.++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+ + ||||
T Consensus 6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~--i~~HPn 83 (125)
T 2fo3_A 6 NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK--PPKHTH 83 (125)
T ss_dssp ---CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS--CCCBTT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCC--CCCCCc
Confidence 467999999999999999999999999999999999999999999999999999999999999999999998 6 9999
Q ss_pred ccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCC
Q 042246 447 LYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKP 492 (639)
Q Consensus 447 Vy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnP 492 (639)
|+.+|+|||++|+ +.|+|++ +|.+||++||+||.+|++
T Consensus 84 v~~~G~iCl~iL~-------~~W~P~~-~i~~vl~si~~ll~~p~~ 121 (125)
T 2fo3_A 84 VYSNGDICLSLLG-------DDYNPSL-SISGLVLSIISMLSSAKE 121 (125)
T ss_dssp BCTTSBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHC----
T ss_pred CCCCCEEEchhcC-------CCCCCCC-cHHHHHHHHHHHHhCccc
Confidence 9999999999997 7999996 999999999999988876
No 33
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.4e-33 Score=260.56 Aligned_cols=115 Identities=26% Similarity=0.514 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcc-cCC
Q 042246 367 NKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLR-LNP 445 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~I-fHP 445 (639)
..+.+||++|+++|+++++.||.+.+.++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+ + |||
T Consensus 19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~--i~~HP 96 (136)
T 2h2y_A 19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQK--PPKHT 96 (136)
T ss_dssp TSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS--CCCCT
T ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCC--CCCCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999998 6 999
Q ss_pred CccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCC
Q 042246 446 NLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQK 491 (639)
Q Consensus 446 NVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pn 491 (639)
|||.+|+|||++|+ +.|+|++ +|.+||++||+||.+|+
T Consensus 97 nv~~~G~ICl~iL~-------~~WsP~~-ti~~vL~si~sll~~p~ 134 (136)
T 2h2y_A 97 HVYSNGDICLSVLG-------DDYNPSL-SISGLILSIISMLSSAK 134 (136)
T ss_dssp TBCTTCCBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHSSSC
T ss_pred cCCCCCEEECcccc-------CCCCCCC-cHHHHHHHHHHHHhCcC
Confidence 99999999999998 7999996 99999999999998765
No 34
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.9e-34 Score=268.20 Aligned_cols=118 Identities=29% Similarity=0.490 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeeEE-ecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCC
Q 042246 367 NKWAKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNP 445 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~~P~gI~Vr-p~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHP 445 (639)
..+.+||++|+++| ++++||++. ++++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+ ||||
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 79 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM--VYHP 79 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSC--CCBT
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecC--CccC
Confidence 46889999999999 578999998 7889999999988 9999999999999999999999999999999999 9999
Q ss_pred CccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCc
Q 042246 446 NLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGY 499 (639)
Q Consensus 446 NVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~ 499 (639)
||+.+|+|||++|+ +.|+|++ +|.+||++|++||.+||| ++|..
T Consensus 80 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~Pn~--~~p~n 123 (160)
T 1y8x_A 80 NIDLEGNVCLNILR-------EDWKPVL-TINSIIYGLQYLFLEPNP--EDPLN 123 (160)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCC--SSCSC
T ss_pred cCCCCCeEEcccch-------hhccCCC-CHHHHHHHHHHHHhCCCC--CCccC
Confidence 99999999999998 7899996 999999999999999998 88853
No 35
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=5e-34 Score=282.33 Aligned_cols=147 Identities=27% Similarity=0.519 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHhCCCCCeeEEecCC-CCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCc
Q 042246 369 WAKRIQEEWKILENDLPDTIFVRVYES-RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNL 447 (639)
Q Consensus 369 a~KRL~KELk~Lqk~~P~gI~Vrp~ed-nL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 447 (639)
+.+||++|+++|++++++||++.+.++ +++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~--i~HPNI 80 (215)
T 1tte_A 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK--VYHPNI 80 (215)
T ss_dssp THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTT--CCCSSS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCC--CccCcC
Confidence 579999999999999999999998776 56799999999999999999999999999999999999999999 999999
Q ss_pred cC-CCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHHH
Q 042246 448 YN-CGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLKT 526 (639)
Q Consensus 448 y~-~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~kt 526 (639)
+. +|+|||++|+ +.|+|++ ||.+||++||+||.+||| ++|.... .+..+..+...|..+++.
T Consensus 81 ~~~~G~ICL~iL~-------~~WsP~~-ti~~VL~sI~sLL~~Pnp--~~Pln~e-------aa~~~~~d~~~f~~~ar~ 143 (215)
T 1tte_A 81 SSVTGAICLDILR-------NAWSPVI-TLKSALISLQALLQSPEP--NDPQDAE-------VAQHYLRDRESFNKTAAL 143 (215)
T ss_dssp CSSSSCCCSSTTT-------CCSCTTC-CHHHHHHHHHHHHTSCCC--SSCSCHH-------HHHHHHHCHHHHHHHHHH
T ss_pred cCCCCEEECccCC-------CCCCCcC-cHHHHHHHHHHHHhCCCC--CCccCHH-------HHHHHHHCHHHHHHHHHH
Confidence 97 9999999998 7999996 999999999999999999 8885432 355677788889888886
Q ss_pred HHHHhcCC
Q 042246 527 MLYTLRRP 534 (639)
Q Consensus 527 m~~~L~kp 534 (639)
+...+...
T Consensus 144 ~t~~yA~~ 151 (215)
T 1tte_A 144 WTRLYASE 151 (215)
T ss_dssp HHHHSSCC
T ss_pred HHHHhccC
Confidence 55555443
No 36
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=5.7e-34 Score=267.06 Aligned_cols=146 Identities=25% Similarity=0.428 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHhCCCCCeeEE-ecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCc
Q 042246 369 WAKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNL 447 (639)
Q Consensus 369 a~KRL~KELk~Lqk~~P~gI~Vr-p~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 447 (639)
+.+||++|+++|+++++.||.+. +.++|++.|+++|. |+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPnv 79 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTK--IYHPNI 79 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSC--CCCTTB
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCC--CccccC
Confidence 56899999999999999999754 57889999999998 999999999999999999999999999999999 999999
Q ss_pred cCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHHHH
Q 042246 448 YNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLKTM 527 (639)
Q Consensus 448 y~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~ktm 527 (639)
+.+|+|||++|+ .++|+|++ +|.+||++|++||.+||| ++|.... +
T Consensus 80 ~~~G~iCl~iL~------~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~-------------------------a 125 (154)
T 1c4z_D 80 DEKGQVCLPVIS------AENWKPAT-KTDQVIQSLIALVNDPQP--EHPLRAD-------------------------L 125 (154)
T ss_dssp CTTCBBCCTTTS------SSSCCTTC-CHHHHHHHHHHHHHSCCC--SSCSCHH-------------------------H
T ss_pred CCCCEEECCCCC------CCCCCCCC-cHHHHHHHHHHHHcCCCC--CchhhHH-------------------------H
Confidence 999999999996 27899996 999999999999999998 8884321 1
Q ss_pred HHHhcCCChhhHHHHHHHHhhcHH
Q 042246 528 LYTLRRPPKHFKDFVIGHFYKHAH 551 (639)
Q Consensus 528 ~~~L~kpPk~Fe~~V~~HF~~~a~ 551 (639)
+.++++.++.|++.|+++.+++|.
T Consensus 126 a~~~~~~~~~f~~~~~~~~~~~a~ 149 (154)
T 1c4z_D 126 AEEYSKDRKKFCKNAEEFTKKYGE 149 (154)
T ss_dssp HHHHHTCSSTTHHHHHHHHTTC--
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcc
Confidence 445677889999999888887775
No 37
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=3e-33 Score=267.40 Aligned_cols=121 Identities=26% Similarity=0.474 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHh-C-C------CC---CeeEEe-cCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCee
Q 042246 367 NKWAKRIQEEWKILEN-D-L------PD---TIFVRV-YESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNV 434 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk-~-~------P~---gI~Vrp-~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV 434 (639)
..+.+||+|||++|++ . + |. ++.+.+ .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v 84 (172)
T 2y9m_A 5 DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKI 84 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEE
Confidence 5789999999999998 4 2 43 467777 889999999999999999999999999999999999999999
Q ss_pred eecc-CCcccCCCc-cCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 435 YYHS-GGLRLNPNL-YNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 435 ~F~T-~~~IfHPNV-y~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
+|.| + |||||| +.+|+|||++|+ .+.|+|++ +|.+||++|++||.+||| ++|.
T Consensus 85 ~f~t~~--i~HPni~~~~G~iCl~iL~------~~~W~p~~-~i~~vL~si~~ll~~p~~--~~p~ 139 (172)
T 2y9m_A 85 SFMQNN--ILHCNVKSATGEICLNILK------PEEWTPVW-DLLHCVHAVWRLLREPVC--DSPL 139 (172)
T ss_dssp EECTTS--CCCTTEETTTTEECCGGGS------TTTCCTTC-CHHHHHHHHHHHHHSCCT--TSCS
T ss_pred EEeeCC--eecCCCcCCCCEEeccccC------CCCCCCcC-cHHHHHHHHHHHHhCCCC--CCcc
Confidence 9999 8 999999 489999999997 36999996 999999999999999999 8884
No 38
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-33 Score=270.68 Aligned_cols=120 Identities=28% Similarity=0.460 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeeEE-ecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcc
Q 042246 364 QPTNKWAKRIQEEWKILENDLPDTIFVR-VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLR 442 (639)
Q Consensus 364 ~~s~~a~KRL~KELk~Lqk~~P~gI~Vr-p~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~I 442 (639)
..+..+.+||++||++| ++++||++. ++++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+ |
T Consensus 22 ~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~--i 96 (180)
T 2nvu_C 22 KKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM--V 96 (180)
T ss_dssp CSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSC--C
T ss_pred CCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceecc--C
Confidence 34567899999999999 578999998 7889999999988 9999999999999999999999999999999999 9
Q ss_pred cCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 443 LNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 443 fHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
|||||+.+|+|||++|+ +.|+|++ +|.+||++|++||.+||| ++|.
T Consensus 97 ~HPNV~~~G~iCl~iL~-------~~W~p~~-~i~~vL~si~~ll~~Pn~--~~p~ 142 (180)
T 2nvu_C 97 YHPNIDLEGNVALNILR-------EDWKPVL-TINSIIYGLQYLFLEPNP--EDPL 142 (180)
T ss_dssp CBTTBCTTSBBCCGGGT-------TSCCTTC-CHHHHHHHHHHHHHSCCT--TSCS
T ss_pred ccCCCCCCCcEEccccc-------ccCCCCC-CHHHHHHHHHHHHhCCCC--CCcc
Confidence 99999999999999998 7999996 999999999999999998 8884
No 39
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=4.6e-32 Score=288.61 Aligned_cols=168 Identities=24% Similarity=0.446 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCC
Q 042246 367 NKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPN 446 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 446 (639)
..+.|||+||+++|++++|.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||||
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPn 79 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR--IYHPN 79 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSC--CCCTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecc--ccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcccccCCcchhhhhhhccHHHHHHHHHH
Q 042246 447 LYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYASWNNTAHGEVESHKYNESTFILSLKT 526 (639)
Q Consensus 447 Vy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e~l~~ta~ge~~s~~Yne~~f~~s~kt 526 (639)
|+.+|+|||++|. +.|+|++ ||.+||++|++||.+||| ++|... ..+..++.+...|..+++.
T Consensus 80 v~~~G~iCl~il~-------~~W~p~~-~i~~vL~~i~~ll~~pnp--~~p~n~-------~aa~~~~~d~~~y~~~~~~ 142 (399)
T 4ddg_A 80 INSNGSISLDILR-------SQWSPAL-TISKVLLSICSLLCDPNP--DDPLVP-------EIARIYKTDREKYNRIARE 142 (399)
T ss_dssp BCTTCBBCCGGGT-------TSCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSH-------HHHHHHHHCHHHHHHHHHH
T ss_pred cCCCCeEeCcccc-------cCCCccc-cHHHHHHHHHHHHcCCCC--CchhhH-------HHHHHHHHCHHHHHHHHHH
Confidence 9999999999997 7999996 999999999999999999 888432 3456778899999999998
Q ss_pred HHHHhcCCChhhHHHHHHHHhhcHHHH
Q 042246 527 MLYTLRRPPKHFKDFVIGHFYKHAHDI 553 (639)
Q Consensus 527 m~~~L~kpPk~Fe~~V~~HF~~~a~~I 553 (639)
+.......+..+.+.|.+.-+.-..+|
T Consensus 143 ~~~~~a~~~v~~De~i~~q~~~I~~e~ 169 (399)
T 4ddg_A 143 WTQKYAMGGSAYDEAIMAQQDRIQQEI 169 (399)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhHHHHHHHHHHHhhh
Confidence 887787778888887776444444443
No 40
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=8.3e-34 Score=266.40 Aligned_cols=116 Identities=23% Similarity=0.476 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCcc
Q 042246 369 WAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLY 448 (639)
Q Consensus 369 a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy 448 (639)
+.+||+||+++|+++ ||.|.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||+
T Consensus 3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPni~ 77 (152)
T 2onu_A 3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNK--LLHPNVD 77 (152)
T ss_dssp CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCCTTBC
T ss_pred HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecC--CccCcCc
Confidence 358999999999874 78899999999999999999999999999999999999999999999999999 9999999
Q ss_pred -CCCceeecCccccCCCCCCCCCcCcccHHHHHHH-HHHHHhcCCCCCCCCCc
Q 042246 449 -NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVS-IQALILNQKPYFNEPGY 499 (639)
Q Consensus 449 -~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlS-IQsLLl~pnPyfnEPg~ 499 (639)
.+|+|||++|+ +.|+|++ +|.+||++ ||+||.+||| ++|..
T Consensus 78 ~~~G~iCl~il~-------~~W~p~~-~i~~vl~~ii~~Ll~~Pn~--~~P~n 120 (152)
T 2onu_A 78 EASGSVCLDVIN-------QTWTPLY-SLVNVFEVFLPQLLTYPNP--SDPLN 120 (152)
T ss_dssp TTTCBBCHHHHH-------HHCCTTC-CHHHHHHTHHHHHHHSCCC--SSCSS
T ss_pred CcCCeEeccccc-------ccCCCCC-CHHHHHHHHHHHHHhCCCC--CCccc
Confidence 69999999998 6899996 99999999 6999999999 88853
No 41
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=99.98 E-value=9.5e-33 Score=268.18 Aligned_cols=120 Identities=25% Similarity=0.481 Sum_probs=112.5
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeeEE----ecCCCCc---eEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeee
Q 042246 364 QPTNKWAKRIQEEWKILENDLPDTIFVR----VYESRMD---LLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYY 436 (639)
Q Consensus 364 ~~s~~a~KRL~KELk~Lqk~~P~gI~Vr----p~ednL~---~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F 436 (639)
.....+.+||+|||++|+ +++||++. +.++|++ .|+++|. |++|||+||+|+|+|.||++||++||+|+|
T Consensus 25 ~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f 101 (190)
T 3o2u_A 25 PNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVC 101 (190)
T ss_dssp CCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEE
T ss_pred CCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEE
Confidence 455678999999999998 78899998 7889999 9999997 888999999999999999999999999999
Q ss_pred ccCCcccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 042246 437 HSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPG 498 (639)
Q Consensus 437 ~T~~~IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg 498 (639)
.|+ ||||||+.+|+|||++|. +.|+|++ +|.+||++|++||.+||| ++|.
T Consensus 102 ~t~--i~HPnV~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~pn~--~~pl 151 (190)
T 3o2u_A 102 LKK--IFHPNIDLKGNVCLNILR-------EDWSPAL-DLQSIITGLLFLFLEPNP--NDPL 151 (190)
T ss_dssp CSC--CCCTTBCTTSBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCS
T ss_pred ecC--cccCCCCCCCeEechhcc-------CCCCCCC-CHHHHHHHHHHHHhCCCC--Ccch
Confidence 999 999999999999999998 7999986 999999999999999999 8884
No 42
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=99.98 E-value=3.9e-33 Score=269.15 Aligned_cols=116 Identities=22% Similarity=0.474 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCC
Q 042246 367 NKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPN 446 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 446 (639)
..+.+||+|||++|+. .||.|.+. +|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |||||
T Consensus 24 ~~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~--i~HPN 97 (179)
T 2z5d_A 24 SPGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNK--IFHPN 97 (179)
T ss_dssp CHHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCBTT
T ss_pred hHHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecC--CccCc
Confidence 3689999999999985 58888887 679999999999999999999999999999999999999999999 99999
Q ss_pred ccC-CCceeecCccccCCCCCCCCCcCcccHHHHHHH-HHHHHhcCCCCCCCCC
Q 042246 447 LYN-CGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVS-IQALILNQKPYFNEPG 498 (639)
Q Consensus 447 Vy~-~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlS-IQsLLl~pnPyfnEPg 498 (639)
|+. +|+|||++|+ +.|+|++ +|.+||++ |++||.+||| ++|.
T Consensus 98 V~~~~G~ICL~iL~-------~~WsP~~-ti~~iL~s~I~~Ll~~Pn~--~~p~ 141 (179)
T 2z5d_A 98 IDEASGTVCLDVIN-------QTWTALY-DLTNIFESFLPQLLAYPNP--IDPL 141 (179)
T ss_dssp BCTTTCBBCHHHHH-------HHCCTTC-CTTHHHHTHHHHHHHSCCC--SSCS
T ss_pred CCCCCCeEeccccc-------cCCCCCC-CHHHHHHHHHHHHHhCCCC--CCcc
Confidence 997 9999999998 6899996 99999999 9999999999 8884
No 43
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=99.98 E-value=9.1e-33 Score=255.79 Aligned_cols=108 Identities=31% Similarity=0.574 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHhCCCCCeeEE--ecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCccc--CC
Q 042246 370 AKRIQEEWKILENDLPDTIFVR--VYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRL--NP 445 (639)
Q Consensus 370 ~KRL~KELk~Lqk~~P~gI~Vr--p~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~If--HP 445 (639)
.+||+||+++|++++++||+|. +.++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+ +| ||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~--i~~~HP 101 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE--NIPVHP 101 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS--CCCCBT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC--CcCCCc
Confidence 3999999999999999999976 788999999999999999999999999999999999999999999999 77 99
Q ss_pred CccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHH
Q 042246 446 NLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALI 487 (639)
Q Consensus 446 NVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLL 487 (639)
|||.+|+|||++|+ ++|+|++ +|.+||++||+||
T Consensus 102 NV~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~slL 135 (136)
T 2a7l_A 102 HVYSNGHICLSILT-------EDWSPAL-SVQSVCLSIISML 135 (136)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHT
T ss_pred cCCCCCeEEchhcC-------CCCCCCC-cHHHHHHHHHHHh
Confidence 99999999999998 7999996 9999999999998
No 44
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=99.98 E-value=5.5e-32 Score=257.03 Aligned_cols=129 Identities=16% Similarity=0.247 Sum_probs=114.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHhCCCCC-eeEEe-cCCC--CceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeec
Q 042246 362 LKQPTNKWAKRIQEEWKILENDLPDT-IFVRV-YESR--MDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYH 437 (639)
Q Consensus 362 ~~~~s~~a~KRL~KELk~Lqk~~P~g-I~Vrp-~edn--L~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~ 437 (639)
+......+.+||+|||++|++++++| |.+.+ +++| ++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.
T Consensus 19 ~~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~ 98 (160)
T 2a4d_A 19 STGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFV 98 (160)
T ss_dssp --CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred CCeeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEe
Confidence 33445789999999999999999988 67776 5555 89999999999999999999999999999999999999999
Q ss_pred cCCcccCCCcc-CCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHh-cCCCCCCCCCcc
Q 042246 438 SGGLRLNPNLY-NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALIL-NQKPYFNEPGYA 500 (639)
Q Consensus 438 T~~~IfHPNVy-~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl-~pnPyfnEPg~e 500 (639)
|+ ||||||+ .+|+|||++|+.| +.|+|++ +|.+||++||+||. .||+ ++|+..
T Consensus 99 T~--i~HPNV~~~~G~ICl~iL~~~-----~~WsP~~-ti~~vL~sI~~ll~~~pn~--~~P~n~ 153 (160)
T 2a4d_A 99 TK--INMNGVNSSNGVVDPRAISVL-----AKWQNSY-SIKVVLQELRRLMMSKENM--KLPQPP 153 (160)
T ss_dssp BC--CCCTTBCTTTCBBCGGGSHHH-----HTCCTTC-CHHHHHHHHHHHHTSTTTT--TCCCCC
T ss_pred cC--ceeCCEECCCCEEehhhcCCc-----cCCCccC-cHHHHHHHHHHHHccCCCC--CCCCCh
Confidence 99 9999999 7999999999855 5899996 99999999999995 5788 888543
No 45
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=99.97 E-value=5.1e-32 Score=259.25 Aligned_cols=144 Identities=16% Similarity=0.220 Sum_probs=122.2
Q ss_pred cccCCccccccccc--ccCCCCHHHHHHHHHHHHHHHhCCCCC-eeEEe-cCCC--CceEEEEEEcCCCCCCCCceEEEE
Q 042246 347 AVEDHLDHHYASKA--SLKQPTNKWAKRIQEEWKILENDLPDT-IFVRV-YESR--MDLLRAVIVGAEGTPYHDGLFFFD 420 (639)
Q Consensus 347 ~ve~~sdHhy~~~s--s~~~~s~~a~KRL~KELk~Lqk~~P~g-I~Vrp-~edn--L~~W~avI~GP~gTPYeGGlF~fd 420 (639)
.+...++||+.... ........+.+||+|||++|+++++.| +.+.+ +++| ++.|+++|.||+||||+||+|+|+
T Consensus 12 ~~s~~~~~~~~~p~~~~~~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~ 91 (170)
T 2hlw_A 12 SQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91 (170)
T ss_dssp CSCSSSCSSCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEE
T ss_pred cccccccccccCCccccCCcccCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEE
Confidence 34456778887542 111223567899999999999999988 56776 5555 899999999999999999999999
Q ss_pred EEcCCCCCCCCCeeeeccCCcccCCCcc-CCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhc-CCCCCCCCC
Q 042246 421 VFFPSSYPNVPPNVYYHSGGLRLNPNLY-NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILN-QKPYFNEPG 498 (639)
Q Consensus 421 I~FP~dYP~~PPkV~F~T~~~IfHPNVy-~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~-pnPyfnEPg 498 (639)
|.||++||++||+|+|.|+ ||||||+ .+|+|||++|+.| +.|+|++ +|.+||++||+||.+ ||+ ++|.
T Consensus 92 i~fp~~YP~~PP~v~F~T~--i~HPNV~~~~G~ICl~iL~~~-----~~WsP~~-ti~~vL~sI~~ll~~~pn~--~~P~ 161 (170)
T 2hlw_A 92 IECGPKYPEAPPFVRFVTK--INMNGVNSSNGVVDPRAISVL-----AKWQNSY-SIKVVLQELRRLMMSKENM--KLPQ 161 (170)
T ss_dssp EECCSSCTTSCCEEEECBC--CCCSSBCSSSCBBCTTTCHHH-----HTCCSSC-CHHHHHHHHHHHHHSTTTS--SSCC
T ss_pred EECCCCCCCCCCeeEEecc--cccCCEeCCCCEEEhhhcCCC-----CCCCccC-cHHHHHHHHHHHHccCCCC--CCCC
Confidence 9999999999999999999 9999999 8999999999854 5899996 999999999999974 788 8885
Q ss_pred cc
Q 042246 499 YA 500 (639)
Q Consensus 499 ~e 500 (639)
..
T Consensus 162 n~ 163 (170)
T 2hlw_A 162 PP 163 (170)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 46
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=99.97 E-value=8.5e-32 Score=254.42 Aligned_cols=127 Identities=20% Similarity=0.373 Sum_probs=115.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhC-CCCCeeEEecC-C--CCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeee
Q 042246 361 SLKQPTNKWAKRIQEEWKILEND-LPDTIFVRVYE-S--RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYY 436 (639)
Q Consensus 361 s~~~~s~~a~KRL~KELk~Lqk~-~P~gI~Vrp~e-d--nL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F 436 (639)
........+.+||+|||++|+++ ++.||.+.+.. + |++.|+++|.||+||||+||+|+|+|.||++||++||+|+|
T Consensus 14 ~~~~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F 93 (156)
T 2q0v_A 14 LYFQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKF 93 (156)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred cCCcccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEE
Confidence 44566678899999999999998 78899998843 3 59999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCccCCCce---eecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCcc
Q 042246 437 HSGGLRLNPNLYNCGKV---CLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGYA 500 (639)
Q Consensus 437 ~T~~~IfHPNVy~~GkV---CLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~e 500 (639)
.|+ ||||||+.+|+| ||++|+ .|+|++ +|.+||++||+||.+||| ++|...
T Consensus 94 ~t~--i~HPNV~~~G~icisCL~iL~--------~WsP~~-ti~~vL~sI~~ll~~Pn~--~~p~n~ 147 (156)
T 2q0v_A 94 DTK--IEMSCVDNCGRVIKNNLHILK--------NWNRNY-TIETILISLRQEMLSSAN--KRLPQP 147 (156)
T ss_dssp SBC--CCCTTBCTTSBBCGGGSHHHH--------TCCTTC-CHHHHHHHHHHHTTSTTT--TTCCCC
T ss_pred Ecc--cccCCCccCCeEehhhccccc--------CCCCcC-cHHHHHHHHHHHHhCCCC--CCcCCh
Confidence 999 999999999999 899997 599996 999999999999999998 788543
No 47
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=99.97 E-value=2.5e-32 Score=261.38 Aligned_cols=116 Identities=26% Similarity=0.524 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCc
Q 042246 368 KWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNL 447 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 447 (639)
.+.+||++|++.|++++. ++ ..++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~--i~HPNi 85 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNR--ILHPNV 85 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCBTTB
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecC--cccccC
Confidence 567999999999999874 44 357899999999999999999999999999999999999999999999 999999
Q ss_pred c-CCCceeecCccccCCCCCCCCCcCcccHHHHHHHH-HHHHhcCCCCCCCCCc
Q 042246 448 Y-NCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSI-QALILNQKPYFNEPGY 499 (639)
Q Consensus 448 y-~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSI-QsLLl~pnPyfnEPg~ 499 (639)
+ .+|+|||++|+ +.|+|++ +|.+||++| ++||.+||| ++|..
T Consensus 86 ~~~~G~iCl~iL~-------~~W~p~~-~i~~vL~sil~~ll~~Pn~--~~p~n 129 (171)
T 1yf9_A 86 DERSGSVCLDVIN-------QTWTPMY-QLENIFDVFLPQLLRYPNP--SDPLN 129 (171)
T ss_dssp CTTTCBBCHHHHH-------HHCCTTC-CTHHHHHTHHHHHHHSCCS--SCCSC
T ss_pred cccCCeEeccccc-------cCCCCCC-cHHHHHHHHHHHHHhCCCC--CCccc
Confidence 9 69999999998 6899996 999999998 799999998 88853
No 48
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=3.4e-31 Score=256.70 Aligned_cols=120 Identities=21% Similarity=0.466 Sum_probs=103.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCccc
Q 042246 364 QPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRL 443 (639)
Q Consensus 364 ~~s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~If 443 (639)
..+..+.+||++|+++|++++++||.+.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+
T Consensus 10 ~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~---- 85 (187)
T 2f4w_A 10 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP---- 85 (187)
T ss_dssp ----CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC----
T ss_pred CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC----
Confidence 4556789999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCC
Q 042246 444 NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKP 492 (639)
Q Consensus 444 HPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnP 492 (639)
|||++.+|+|||++|++| .+.|+|++ +|.+||++|++||.+|||
T Consensus 86 ~~~~~~~G~ICL~iL~~~----~~~W~P~~-ti~~vL~si~sll~~p~p 129 (187)
T 2f4w_A 86 NGRFKCNTRLCLSITDFH----PDTWNPAW-SVSTILTGLLSFMVEKGP 129 (187)
T ss_dssp CSSBCTTSCBC--------------CCTTC-CHHHHHHHHHHHHHSCCC
T ss_pred CceeccCCeEeeeccccC----ccCCCCcC-cHHHHHHHHHHHhcCCCC
Confidence 899998999999999643 37999996 999999999999999998
No 49
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=99.97 E-value=1.7e-31 Score=246.74 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCeeEEecC-C--CCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcc
Q 042246 367 NKWAKRIQEEWKILEND-LPDTIFVRVYE-S--RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLR 442 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~-~P~gI~Vrp~e-d--nL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~I 442 (639)
..+.+||+||+++|+++ ++.||.+.+.. + |++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ |
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i 82 (138)
T 1jat_B 5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK--I 82 (138)
T ss_dssp CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC--C
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc--c
Confidence 45679999999999998 68899998843 3 48999999999999999999999999999999999999999999 9
Q ss_pred cCCCccCC-Cce--eecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCCCCCCc
Q 042246 443 LNPNLYNC-GKV--CLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYFNEPGY 499 (639)
Q Consensus 443 fHPNVy~~-GkV--CLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyfnEPg~ 499 (639)
|||||+.+ |+| ||++|+ .|+|++ +|.+||++||+||.+||| ++|..
T Consensus 83 ~HPnv~~~~G~i~~cL~~l~--------~W~p~~-~i~~vl~~i~~ll~~pn~--~~p~~ 131 (138)
T 1jat_B 83 NLPCVNPTTGEVQTDFHTLR--------DWKRAY-TMETLLLDLRKEMATPAN--KKLRQ 131 (138)
T ss_dssp CCTTBCTTTCBBCTTSHHHH--------TCCTTC-CHHHHHHHHHHHHTSHHH--HTSCC
T ss_pred ccCCEeCCCCEEeeecccCC--------CCCCcC-cHHHHHHHHHHHHcCCCC--CCCCC
Confidence 99999975 999 999986 799996 999999999999999998 77743
No 50
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=99.97 E-value=1.6e-31 Score=253.87 Aligned_cols=121 Identities=19% Similarity=0.347 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHhCC------------CCCeeEEecCCCCceEEEEEEcCCCCCCC--CceEEEEEEcCCCCCCCCCe
Q 042246 368 KWAKRIQEEWKILENDL------------PDTIFVRVYESRMDLLRAVIVGAEGTPYH--DGLFFFDVFFPSSYPNVPPN 433 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~------------P~gI~Vrp~ednL~~W~avI~GP~gTPYe--GGlF~fdI~FP~dYP~~PPk 433 (639)
.+.|||++|+++|++++ +.+|++.+.++|++.|+++|.||+||||+ ||.|+|+|.||++||++||+
T Consensus 8 ~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~ 87 (167)
T 4ds2_A 8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPT 87 (167)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCE
T ss_pred HHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCE
Confidence 46799999999999987 78999999999999999999999999999 99999999999999999999
Q ss_pred eeeccCCcccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHH-HHHHHHhcCCCCCCCCC
Q 042246 434 VYYHSGGLRLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLV-SIQALILNQKPYFNEPG 498 (639)
Q Consensus 434 V~F~T~~~IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLl-SIQsLLl~pnPyfnEPg 498 (639)
|+|.|+ ||||||+.+|+|||++|. +.|+|++ +|.+||+ .|++|+...+|..++|.
T Consensus 88 v~f~t~--i~HPnv~~~G~iCl~il~-------~~W~p~~-~i~~vll~~l~~l~~~~~pn~~~p~ 143 (167)
T 4ds2_A 88 VRFVTP--VYSPLVTGEGGICDRMVN-------DFWTPDQ-HASDVIKLVLDRVFSQYKSRRDDDV 143 (167)
T ss_dssp EEESSC--CCCSSCCTTSCCCTHHHH-------TTCCTTS-CHHHHHHHHHHHHHTSTTSCCSCCC
T ss_pred EEEeCC--cccccCCCCCEEEcccCc-------CCCCCCC-ChHHHHHHHHHHHHhcCCCCCcchH
Confidence 999999 999999999999999998 7999996 9999765 57778775333337773
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.97 E-value=1.7e-30 Score=251.76 Aligned_cols=121 Identities=17% Similarity=0.302 Sum_probs=112.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhCC---CCCeeEEecCCCCceEEEEEEcC-CCCCCCC-----------ceEEEEEEcCCCC
Q 042246 363 KQPTNKWAKRIQEEWKILENDL---PDTIFVRVYESRMDLLRAVIVGA-EGTPYHD-----------GLFFFDVFFPSSY 427 (639)
Q Consensus 363 ~~~s~~a~KRL~KELk~Lqk~~---P~gI~Vrp~ednL~~W~avI~GP-~gTPYeG-----------GlF~fdI~FP~dY 427 (639)
...+..+.+||++||++|++++ +.+|.+.+.++|++.|+++|.|| ++|||++ |.|.|+|.||++|
T Consensus 22 ~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~Y 101 (186)
T 1zuo_A 22 VSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNF 101 (186)
T ss_dssp --CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTT
T ss_pred ccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCC
Confidence 3557789999999999999988 68899999999999999999998 9999998 8999999999999
Q ss_pred CCCCCeeeeccCCcccCC-CccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCC
Q 042246 428 PNVPPNVYYHSGGLRLNP-NLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKP 492 (639)
Q Consensus 428 P~~PPkV~F~T~~~IfHP-NVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnP 492 (639)
|++||+|+|.|+ +||| ||+.+|+|||++|+. +.|+|++ +|.+||++|++||.+|++
T Consensus 102 P~~PP~V~f~tp--i~hPnnV~~~G~ICL~iL~~------~~WsP~~-ti~~VL~sI~slL~~p~a 158 (186)
T 1zuo_A 102 PFDPPFVRVVLP--VLSGGYVLGGGALCMELLTK------QGWSSAY-SIESVIMQINATLVKGKA 158 (186)
T ss_dssp TSSCCEEEEEES--CEESTTBCGGGBBCCGGGST------TTCCTTS-CHHHHHHHHHHHHHHTTC
T ss_pred CCCCCeEEEeCC--ccCCCccCCCCcEEeccCCC------CCCCCcC-cHHHHHHHHHHHHcCCCh
Confidence 999999999999 9999 699999999999972 6899996 999999999999999876
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.84 E-value=4.1e-22 Score=190.59 Aligned_cols=102 Identities=21% Similarity=0.421 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCc----------eEEEEEEcCCCCCCCCCeee
Q 042246 366 TNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDG----------LFFFDVFFPSSYPNVPPNVY 435 (639)
Q Consensus 366 s~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGG----------lF~fdI~FP~dYP~~PPkV~ 435 (639)
...|.+||++|++.|++ ++.+.++++..|.++|.||+||||+|| .|.+.|.||.+||++||+|+
T Consensus 30 ~~~w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~ 103 (172)
T 2z6o_A 30 RELWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA 103 (172)
T ss_dssp THHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred cHHHHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence 47899999999999998 466778899999999999999999999 99999999999999999999
Q ss_pred eccCCcccCCCccCCCceeecCccc--cCCCCCCCCCcCcccHHHHH
Q 042246 436 YHSGGLRLNPNLYNCGKVCLSLLNT--WTGNKNEKWMPNMSTMLQVL 480 (639)
Q Consensus 436 F~T~~~IfHPNVy~~GkVCLSLL~T--w~G~~~E~WSPa~sTIlqVL 480 (639)
|.+. .+||||||.+|+|||++|.. | ..|+|.+ +|.+||
T Consensus 104 F~~~-~~~hpnmY~~G~ICLdIL~kp~W-----s~~~P~~-~IahiL 143 (172)
T 2z6o_A 104 VPEL-DGKTAKMYRGGKICLTDHFKPLW-----ARNVPKF-GLAHLM 143 (172)
T ss_dssp CGGG-TTTCSSBCTTSBBCCCTTHHHHH-----HHHTTSC-CHHHHH
T ss_pred eCCC-CCCCCCCCCCCcEechhhccccc-----cccCCcc-CHHHHH
Confidence 9984 48999999999999999942 3 2566997 999987
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.59 E-value=2.5e-15 Score=143.43 Aligned_cols=114 Identities=17% Similarity=0.194 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhCCC---CCeeEEecCCCCceEEEEEEcCCCCCCCCce---EEEEEEcCCCCCCCCCeeeecc--CC--
Q 042246 371 KRIQEEWKILENDLP---DTIFVRVYESRMDLLRAVIVGAEGTPYHDGL---FFFDVFFPSSYPNVPPNVYYHS--GG-- 440 (639)
Q Consensus 371 KRL~KELk~Lqk~~P---~gI~Vrp~ednL~~W~avI~GP~gTPYeGGl---F~fdI~FP~dYP~~PPkV~F~T--~~-- 440 (639)
+|..+|+..+.+.-| +...+...++....+-..+.|.-.++|+||. |.+.|.||.+||++||.|.|.+ ..
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 567778777765433 2333445677777888888888889999999 8899999999999999998864 11
Q ss_pred ----ccc-CCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCC
Q 042246 441 ----LRL-NPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKP 492 (639)
Q Consensus 441 ----~If-HPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnP 492 (639)
.|+ ||||+.+|+|||++|. .|+|..++|.+||.+|++||.+|||
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL~--------~W~p~~s~L~~ll~~l~~lf~ep~~ 159 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPILH--------AWDPAAMNLIMVVQELMSLLHEPPQ 159 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGGG--------SCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred ccccccCCCCCCCCCCcEeCcccc--------cCCCCcCcHHHHHHHHHHHhcCCCC
Confidence 266 9999999999999997 6999656999999999999999998
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.45 E-value=3e-14 Score=134.41 Aligned_cols=85 Identities=22% Similarity=0.442 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCc----------eEEEEEEcCCCCCCCCCeeee
Q 042246 367 NKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDG----------LFFFDVFFPSSYPNVPPNVYY 436 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGG----------lF~fdI~FP~dYP~~PPkV~F 436 (639)
..|..||..|+..|-+ +|.....+-..|...+.||+||+|.|+ .|.+.|.||.+||+.||+|+|
T Consensus 33 ~~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F 106 (168)
T 3kpa_A 33 DKWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL 106 (168)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred HHHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeec
Confidence 5699999999999965 344445555679999999999999999 899999999999999999999
Q ss_pred ccCCcccCCCccCCCceeecCc
Q 042246 437 HSGGLRLNPNLYNCGKVCLSLL 458 (639)
Q Consensus 437 ~T~~~IfHPNVy~~GkVCLSLL 458 (639)
.+. ..+|||+|.+|+|||+++
T Consensus 107 p~l-dgkt~kmYr~GkICLdIh 127 (168)
T 3kpa_A 107 PEL-EGKTVKMYRGGKICMTTH 127 (168)
T ss_dssp GGG-TTTCSSEETTTEECCCTT
T ss_pred ccc-cCcCccccCCCcEEeccc
Confidence 984 279999999999999984
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.16 E-value=8.5e-11 Score=110.56 Aligned_cols=108 Identities=18% Similarity=0.336 Sum_probs=82.9
Q ss_pred HHHHHHHHHhCCCCCee--EEec---CCCCceEEEEEEcCCCCCCCCceEEE--EEEcCCCCCCCCCeeeeccC----Cc
Q 042246 373 IQEEWKILENDLPDTIF--VRVY---ESRMDLLRAVIVGAEGTPYHDGLFFF--DVFFPSSYPNVPPNVYYHSG----GL 441 (639)
Q Consensus 373 L~KELk~Lqk~~P~gI~--Vrp~---ednL~~W~avI~GP~gTPYeGGlF~f--dI~FP~dYP~~PPkV~F~T~----~~ 441 (639)
..+|+..+.+.-| .+. ...+ ..++..|.++|. .+|+|+.|.+ .|.||.+||+.||.| |.++ .+
T Consensus 25 t~~dv~~vl~~yp-~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I 98 (146)
T 3obq_A 25 TVRETVNVITLYK-DLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTI 98 (146)
T ss_dssp HHHHHHHHHHHCT-TEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEE
T ss_pred hHHHHHHHHHhCC-CCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEE
Confidence 3456666655433 222 2222 257788899987 6899999985 999999999999999 5543 24
Q ss_pred ccCCCccCCCceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcCCCCC
Q 042246 442 RLNPNLYNCGKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQKPYF 494 (639)
Q Consensus 442 IfHPNVy~~GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~pnPyf 494 (639)
+.||||+.+|+||+.+|. .|++..++|.++|..++.+|...-|.|
T Consensus 99 ~~~~~Vd~~G~i~lpyL~--------~W~~~~snL~~ll~~l~~~F~~epPv~ 143 (146)
T 3obq_A 99 KTGKHVDANGKIYLPYLH--------EWKHPQSDLLGLIQVMIVVFGDEPPVF 143 (146)
T ss_dssp CCBTTBCTTCBBCCHHHH--------TCCTTTCCHHHHHHHHHHHHHHSCSEE
T ss_pred CCCCCCCCCCCEeccccc--------ccCCCCCCHHHHHHHHHHHHhhCCCCc
Confidence 689999999999999998 588855799999999999998765543
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.21 E-value=1.2 Score=39.45 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeecc
Q 042246 369 WAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHS 438 (639)
Q Consensus 369 a~KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T 438 (639)
...+...|+..|+.--+..+.+ .......+++.|..-.+..-+.-.+.+.|.||++||..||.+.+.+
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 4556788999998655544433 2222345555554322222233478899999999999999998765
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=88.92 E-value=1.9 Score=38.11 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCCCeeEEecCC--CCceEEEEEEcCCCCCCC--CceEEEEEEcCCCCCCCCCeeeeccC
Q 042246 372 RIQEEWKILENDLPDTIFVRVYES--RMDLLRAVIVGAEGTPYH--DGLFFFDVFFPSSYPNVPPNVYYHSG 439 (639)
Q Consensus 372 RL~KELk~Lqk~~P~gI~Vrp~ed--nL~~W~avI~GP~gTPYe--GGlF~fdI~FP~dYP~~PPkV~F~T~ 439 (639)
+...|+.-|+.--+.-+.+.-... ....+++.|..+.+..-+ .-.+.+.|.||++||..+|.|...+.
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 577899888865555554432211 233344444432221111 24788999999999999999987764
No 58
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=87.09 E-value=1.4 Score=42.89 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhCCCCCeeEEecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccCCcccCCCccCC
Q 042246 371 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSGGLRLNPNLYNC 450 (639)
Q Consensus 371 KRL~KELk~Lqk~~P~gI~Vrp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~~ 450 (639)
.+|.+|+..|-=+. +.-....+...++.+..-.| -...+.|.++.+||..||.+...-+ +|.
T Consensus 4 ~~li~Ei~~iGW~~-----l~~id~~~~~i~l~~~D~~g-----R~H~l~v~l~~~yp~~~P~~~~DlP----~~~---- 65 (186)
T 3zqs_A 4 SSLIEEIGTLGWDK-----LVYADTCFSTIKLKAEDASG-----REHLITLKLKAKYPAESPDYFVDFP----VPF---- 65 (186)
T ss_dssp CSHHHHHHHHCGGG-----EEEECTTSSEEEEEEECTTS-----CEEEEEEECCTTTTTSCCEEECCCS----SCC----
T ss_pred HHHHHHHHHhCCce-----eeeecCCccEEEEEEEeCCC-----CeEEEEEEECCCCCCCCCeeEEcCC----CCc----
Confidence 36888988883221 22224578888999886654 6788999999999999999877665 111
Q ss_pred CceeecCccccCCCCCCCCCcCcccHHHHHHHHHHHHhcC
Q 042246 451 GKVCLSLLNTWTGNKNEKWMPNMSTMLQVLVSIQALILNQ 490 (639)
Q Consensus 451 GkVCLSLL~Tw~G~~~E~WSPa~sTIlqVLlSIQsLLl~p 490 (639)
. -.|+|. ++|..|+..++.+|..-
T Consensus 66 --------~-------~~w~~~-ssL~~v~~qF~~~Le~l 89 (186)
T 3zqs_A 66 --------C-------ASWTPQ-SSLISIYSQFLAAIESL 89 (186)
T ss_dssp --------C-------CCCCTT-CCHHHHHHHHHHHHHHT
T ss_pred --------c-------cccCCC-ccHHHHHHHHHHHHHHH
Confidence 1 369987 59999999888888553
No 59
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=85.71 E-value=4.1 Score=36.52 Aligned_cols=70 Identities=7% Similarity=0.132 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCeeEEecCC-------CCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeeccC
Q 042246 368 KWAKRIQEEWKILENDLPDTIFVRVYES-------RMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHSG 439 (639)
Q Consensus 368 ~a~KRL~KELk~Lqk~~P~gI~Vrp~ed-------nL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~ 439 (639)
....+...|+..|+.--+..+. ..... ....+++.|....+ .-..-.+.+.|.||++||..||.|.+.+.
T Consensus 10 ~~~e~q~~EleaL~SIY~d~~~-~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 10 QYYEIQCNELEAIRSIYMDDFT-DLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp HHHHHHHHHHHHHHTTSSSSEE-CCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred chHHHHHHHHHHHHHHChhhhe-ecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 3455667888888764443332 22221 23456777764333 11134788999999999999999987664
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=80.00 E-value=6.2 Score=35.11 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeeEEecCC------CCceEEEEEEcCCC-C-CCCCceEEEEEEcCCCCCCCCCeeeecc
Q 042246 367 NKWAKRIQEEWKILENDLPDTIFVRVYES------RMDLLRAVIVGAEG-T-PYHDGLFFFDVFFPSSYPNVPPNVYYHS 438 (639)
Q Consensus 367 ~~a~KRL~KELk~Lqk~~P~gI~Vrp~ed------nL~~W~avI~GP~g-T-PYeGGlF~fdI~FP~dYP~~PPkV~F~T 438 (639)
.....+...|+..|+.--+..+.+ .... ....+++.|. |.+ . .-..-.+.+.|.||++||..||.|.+.+
T Consensus 9 ~~~~e~q~~EleaL~SIY~d~~~~-~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 9 ESYSQRQDHELQALEAIYGSDFQD-LRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp CCHHHHHHHHHHHHHHHTSSSEEE-CCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred cchHHHHHHHHHHHHHHCccccee-ccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 345567788998888655444432 2211 1234555554 221 0 0012368899999999999999998754
No 61
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=66.70 E-value=13 Score=34.29 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCCCCCCeeeeccC
Q 042246 416 LFFFDVFFPSSYPNVPPNVYYHSG 439 (639)
Q Consensus 416 lF~fdI~FP~dYP~~PPkV~F~T~ 439 (639)
.+.+.|.+|.+||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 799999999999999999986653
No 62
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.04 E-value=3.8 Score=36.29 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCC--CeeE-EecCCCCceEEEEEEcCCCCCCCCceEEEEEEcCCCCCCCCCeeeecc
Q 042246 372 RIQEEWKILENDLPD--TIFV-RVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPNVPPNVYYHS 438 (639)
Q Consensus 372 RL~KELk~Lqk~~P~--gI~V-rp~ednL~~W~avI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T 438 (639)
+...|+..|+.--+. .+.+ .-...+...+++.|......- ..-.+.+.|.||.+||..||.+.+.+
T Consensus 11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~~-~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMD-ADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTTT-CCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCCC-CCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 456677777653322 2321 111122345666665322100 12378999999999999999987554
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=59.43 E-value=5.4 Score=36.55 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCCCCCeeeeccC
Q 042246 416 LFFFDVFFPSSYPNVPPNVYYHSG 439 (639)
Q Consensus 416 lF~fdI~FP~dYP~~PPkV~F~T~ 439 (639)
.+.+.|.+|.+||..||.+.+.+.
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 588999999999999999987764
Done!