Query 042247
Match_columns 253
No_of_seqs 201 out of 1198
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:20:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 6.6E-55 1.4E-59 375.6 28.3 253 1-253 108-363 (365)
2 KOG0697 Protein phosphatase 1B 100.0 5.5E-47 1.2E-51 302.2 20.4 225 1-225 58-296 (379)
3 PTZ00224 protein phosphatase 2 100.0 6.8E-45 1.5E-49 314.5 27.1 217 1-223 53-274 (381)
4 KOG0698 Serine/threonine prote 100.0 9.4E-45 2E-49 311.1 25.1 223 1-228 80-312 (330)
5 PF00481 PP2C: Protein phospha 100.0 4.5E-45 9.8E-50 303.9 13.7 210 1-212 38-254 (254)
6 COG0631 PTC1 Serine/threonine 100.0 1.9E-43 4.2E-48 293.8 17.5 204 1-223 43-255 (262)
7 cd00143 PP2Cc Serine/threonine 100.0 3.2E-37 7E-42 256.0 24.7 211 1-219 35-254 (254)
8 PRK14559 putative protein seri 100.0 5.7E-38 1.2E-42 285.5 21.1 210 1-224 419-639 (645)
9 KOG0699 Serine/threonine prote 100.0 1E-37 2.2E-42 257.4 20.4 167 57-223 330-506 (542)
10 smart00332 PP2Cc Serine/threon 100.0 3.7E-37 8.1E-42 256.1 24.0 209 1-217 39-255 (255)
11 KOG0700 Protein phosphatase 2C 100.0 5.2E-37 1.1E-41 258.3 17.2 207 1-207 104-378 (390)
12 KOG1323 Serine/threonine phosp 99.9 1E-25 2.2E-30 184.8 19.3 220 1-222 149-489 (493)
13 KOG1379 Serine/threonine prote 99.9 4.6E-24 9.9E-29 174.7 19.4 182 1-219 108-330 (330)
14 KOG0618 Serine/threonine phosp 99.8 2.3E-20 4.9E-25 171.3 14.0 208 2-222 557-774 (1081)
15 smart00331 PP2C_SIG Sigma fact 99.8 6.7E-19 1.5E-23 140.5 17.0 155 1-204 35-192 (193)
16 PF13672 PP2C_2: Protein phosp 99.8 2.8E-18 6E-23 139.0 10.4 154 1-187 29-196 (212)
17 TIGR02865 spore_II_E stage II 99.7 1.6E-16 3.5E-21 149.6 18.8 169 1-219 585-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.6 2.4E-14 5.3E-19 114.0 16.6 171 1-220 9-193 (193)
19 COG2208 RsbU Serine phosphatas 98.8 1E-06 2.3E-11 77.2 18.7 137 38-220 214-366 (367)
20 PRK10693 response regulator of 66.3 43 0.00093 28.5 8.3 51 36-89 207-259 (303)
21 PF09436 DUF2016: Domain of un 49.4 11 0.00023 24.8 1.3 31 145-176 12-44 (72)
22 COG3700 AphA Acid phosphatase 48.8 28 0.0006 27.4 3.7 47 161-207 73-130 (237)
23 smart00331 PP2C_SIG Sigma fact 48.4 1.2E+02 0.0027 23.3 9.0 64 157-220 27-95 (193)
24 COG1539 FolB Dihydroneopterin 45.7 1.2E+02 0.0025 22.2 7.0 59 164-224 43-103 (121)
25 cd00534 DHNA_DHNTPE Dihydroneo 45.5 1.1E+02 0.0024 21.8 6.7 58 164-223 42-101 (118)
26 KOG3571 Dishevelled 3 and rela 45.1 99 0.0022 28.4 7.0 32 212-243 332-364 (626)
27 PF06972 DUF1296: Protein of u 44.7 47 0.001 20.9 3.5 27 173-202 19-45 (60)
28 PF04155 Ground-like: Ground-l 41.3 1E+02 0.0022 20.2 5.4 42 174-217 7-48 (76)
29 COG2168 DsrH Uncharacterized c 39.8 20 0.00044 24.9 1.6 52 155-214 22-73 (96)
30 PF01436 NHL: NHL repeat; Int 36.6 63 0.0014 16.5 3.3 21 64-84 8-28 (28)
31 PRK15322 invasion protein OrgB 32.0 2.6E+02 0.0056 22.5 6.7 52 153-205 142-194 (210)
32 PRK11593 folB bifunctional dih 31.9 1.9E+02 0.0042 20.6 6.8 57 164-223 42-100 (119)
33 PF07228 SpoIIE: Stage II spor 29.5 2.6E+02 0.0056 21.3 6.8 66 158-223 2-73 (193)
34 TIGR00525 folB dihydroneopteri 27.5 2.3E+02 0.0049 20.1 6.5 57 164-222 41-99 (116)
35 PRK05457 heat shock protein Ht 26.9 1E+02 0.0022 26.1 4.1 41 147-188 104-144 (284)
36 PRK03072 heat shock protein Ht 25.7 87 0.0019 26.5 3.5 40 148-188 98-137 (288)
37 PRK02391 heat shock protein Ht 25.5 90 0.0019 26.6 3.6 39 148-187 104-142 (296)
38 PRK03982 heat shock protein Ht 25.4 1.1E+02 0.0023 25.9 4.0 39 148-187 96-134 (288)
39 KOG0173 20S proteasome, regula 25.3 3.4E+02 0.0073 22.6 6.5 39 179-218 172-216 (271)
40 TIGR03859 PQQ_PqqD coenzyme PQ 23.0 2E+02 0.0043 19.1 4.2 40 159-201 16-55 (81)
41 PF05402 PqqD: Coenzyme PQQ sy 22.8 2E+02 0.0044 17.9 4.5 25 177-201 17-41 (68)
42 KOG0641 WD40 repeat protein [G 22.5 4.4E+02 0.0094 21.7 6.6 31 68-98 242-274 (350)
43 COG3315 O-Methyltransferase in 21.3 2.5E+02 0.0054 24.0 5.4 24 164-187 174-197 (297)
44 PF05785 CNF1: Rho-activating 21.1 1.3E+02 0.0029 25.3 3.6 22 57-79 132-153 (281)
45 PRK04897 heat shock protein Ht 20.9 1.3E+02 0.0028 25.6 3.7 40 148-188 108-147 (298)
46 PRK02870 heat shock protein Ht 20.7 1.4E+02 0.0031 25.9 3.9 40 148-188 144-183 (336)
47 PF02152 FolB: Dihydroneopteri 20.5 3.1E+02 0.0067 19.1 5.5 51 166-216 41-94 (113)
48 PRK01345 heat shock protein Ht 20.3 1.4E+02 0.0031 25.7 3.8 39 148-187 95-133 (317)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=6.6e-55 Score=375.63 Aligned_cols=253 Identities=60% Similarity=0.977 Sum_probs=229.5
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhcCCC--CCCCceEEEEEEECCeEEEEEecc
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVEDTHFSAGTRKAVKSAFGKVDHAFADAKSLD--SSSGTTALTALILGRTMLIANAGD 78 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~--~~~gtT~~~~~i~~~~l~~a~vGD 78 (253)
|||||||+.+|++|++.+.+.+.+...+...+.++|.++|..+++.+.+..... ..+|||++++++.++++|++|+||
T Consensus 108 V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGD 187 (365)
T PLN03145 108 VFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGD 187 (365)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCC
Confidence 799999999999999999999987666666678889999999999987643322 359999999999999999999999
Q ss_pred cceEEEecCceeECCCCCCCCChhHHHHHHHcCCeEEcCeecCceehhhhhccccccCCCCCC-CCcccCCceEEEEcCC
Q 042247 79 SRAVLGKRGRAIELSKDHKPNVTSERLRIEKLGGVIYDGYLNGQLAVARALGDWHIKGSKGSS-CPLSSEPELEELVLTE 157 (253)
Q Consensus 79 Sr~~l~r~~~~~~lT~dh~~~~~~e~~ri~~~~~~i~~~~~~~~~~~tr~lG~~~~k~~~~~~-~~v~~~p~~~~~~l~~ 157 (253)
||+|+++++++++||+||++.++.|+.||.+.||.+..++..+.+++||+||++.+|..+... .++.++|++..+.+.+
T Consensus 188 SRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~ 267 (365)
T PLN03145 188 CRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTE 267 (365)
T ss_pred ceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCceecceECCccccccccccccccccccccCCCcceEEEEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999998887543221 2467899999999999
Q ss_pred CCeEEEEEcCCccccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCCCCCCCCCCCccCCC
Q 042247 158 EDEYLILGCDGLWDVMSSQCAVTMVRKELMQHNDPERCSKALVKEALQRNTCDNLTVVVVCFSPNPPPKIQIPKSHKRRS 237 (253)
Q Consensus 158 ~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~Tvivv~~~~~~~~~~~~~~~~~~~~ 237 (253)
+|.|||||||||||+++++++.+++.+.+....+++++|+.|+++|+.+++.||+|||||+|+..+++....|++...|+
T Consensus 268 ~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~~~~~~~~~~~~~~~~ 347 (365)
T PLN03145 268 EDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQPPPNLVAPRPRVQRS 347 (365)
T ss_pred CCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecCCCccccccccccccc
Confidence 99999999999999999999999998877767789999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhhhcCC
Q 042247 238 ISAEGLDHLKGVLNGL 253 (253)
Q Consensus 238 ~~~~~~~~~~~~~~~~ 253 (253)
+++++++.++..+++|
T Consensus 348 ~~~~~~~~~~~~~~~~ 363 (365)
T PLN03145 348 ISAEGLRELQSFLDSL 363 (365)
T ss_pred cCHHHHHHHHHhhhcc
Confidence 9999999999999875
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-47 Score=302.23 Aligned_cols=225 Identities=34% Similarity=0.628 Sum_probs=205.4
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhcCCCch--------hHHHHHHHHHHHHHHHHHhhcCCC---CCCCceEEEEEEECC
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVEDTHFSA--------GTRKAVKSAFGKVDHAFADAKSLD---SSSGTTALTALILGR 69 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~~~~~~~--------~~~~~l~~a~~~~~~~i~~~~~~~---~~~gtT~~~~~i~~~ 69 (253)
|||||.|+++|.+++.++.+.+.....+.. +...-|+..|.++++.+....... .++|||++++++.+.
T Consensus 58 VfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~ 137 (379)
T KOG0697|consen 58 VFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPT 137 (379)
T ss_pred EEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCc
Confidence 799999999999999999999877544433 567789999999998877544332 359999999999999
Q ss_pred eEEEEEecccceEEEecCceeECCCCCCCCChhHHHHHHHcCCeEEcCeecCceehhhhhccccccCCCCCC---CCccc
Q 042247 70 TMLIANAGDSRAVLGKRGRAIELSKDHKPNVTSERLRIEKLGGVIYDGYLNGQLAVARALGDWHIKGSKGSS---CPLSS 146 (253)
Q Consensus 70 ~l~~a~vGDSr~~l~r~~~~~~lT~dh~~~~~~e~~ri~~~~~~i~~~~~~~~~~~tr~lG~~~~k~~~~~~---~~v~~ 146 (253)
++|++|+||||++++|+|+++.-|.||.|.+|.|+.||..+||.+.-.+.+|.++++|+|||.+||...++. +-|.+
T Consensus 138 h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSP 217 (379)
T KOG0697|consen 138 HIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSP 217 (379)
T ss_pred eEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCeEEEEEecceeeeehhccCcccccCCCCCchhcccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999877654 36889
Q ss_pred CCceEEEEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCCCC
Q 042247 147 EPELEELVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQHNDPERCSKALVKEALQRNTCDNLTVVVVCFSPNPPP 225 (253)
Q Consensus 147 ~p~~~~~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~Tvivv~~~~~~~~ 225 (253)
+|++....-...|+||||++|||||+++++|++++++..+.-+.+...+++.+++.++.+|++||+|+|++.|...|+.
T Consensus 218 EPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~APkv 296 (379)
T KOG0697|consen 218 EPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPGAPKV 296 (379)
T ss_pred CCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhccCccCceEEEEecCCCCCC
Confidence 9999999999888899999999999999999999999999989999999999999999999999999999999877754
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=6.8e-45 Score=314.51 Aligned_cols=217 Identities=26% Similarity=0.464 Sum_probs=188.8
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEE-CCeEEEEEeccc
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVEDTHFSAGTRKAVKSAFGKVDHAFADAKSLDSSSGTTALTALIL-GRTMLIANAGDS 79 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~gtT~~~~~i~-~~~l~~a~vGDS 79 (253)
|||||||+++|+++++.+...+.+.... ...+.|++++..+|+++.+... .+|||++++++. +.+++++|+|||
T Consensus 53 VfDGHgG~~~S~~~~~~l~~~l~~~~~~--~~~~~l~~a~~~~d~~i~~~~~---~~GsTatv~lI~~~~~l~vaNVGDS 127 (381)
T PTZ00224 53 VFDGHVNDECSQYLARAWPQALEKEPEP--MTDERMEELCLEIDEEWMDSGR---EGGSTGTFCVIMKDVHLQVGNVGDS 127 (381)
T ss_pred EEeCCCcHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHHHHHhccc---CCCCeEEEEEEEECCEEEEEEcccc
Confidence 7999999999999999998877543221 1234689999999999986543 359999998886 579999999999
Q ss_pred ceEEEecCceeECCCCCCCCChhHHHHHHHcCCeEEcCeecCceehhhhhccccccCCCC---CCCCcccCCceEEEEcC
Q 042247 80 RAVLGKRGRAIELSKDHKPNVTSERLRIEKLGGVIYDGYLNGQLAVARALGDWHIKGSKG---SSCPLSSEPELEELVLT 156 (253)
Q Consensus 80 r~~l~r~~~~~~lT~dh~~~~~~e~~ri~~~~~~i~~~~~~~~~~~tr~lG~~~~k~~~~---~~~~v~~~p~~~~~~l~ 156 (253)
|+|++|+|++++||+||++.++.|+.||.+.++.+..++..|.+.+||+||+..+|.... ..+.+.++|++..+.+.
T Consensus 128 Rayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~ 207 (381)
T PTZ00224 128 RVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQ 207 (381)
T ss_pred eEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEeccccccCceeeecccCCcccccccccccccCcceeeeEEEEEECC
Confidence 999999999999999999999999999999999999889999999999999998886542 12346789999999999
Q ss_pred CCCeEEEEEcCCccc-cCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCC
Q 042247 157 EEDEYLILGCDGLWD-VMSSQCAVTMVRKELMQHNDPERCSKALVKEALQRNTCDNLTVVVVCFSPNP 223 (253)
Q Consensus 157 ~~d~~LvL~SDGv~d-~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~Tvivv~~~~~~ 223 (253)
++| ||||||||||| +++++|+.+++.+.+....+++++|+.|+++|+.+|+.||+|||||++...+
T Consensus 208 ~~D-~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 208 SND-FIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDGA 274 (381)
T ss_pred CCC-EEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCCC
Confidence 877 89999999999 7999999999987666667899999999999999999999999999998765
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-45 Score=311.07 Aligned_cols=223 Identities=43% Similarity=0.663 Sum_probs=199.0
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhcCCCch---hHHHHHHHHHH-HHHHHHHhhcCCCCCCCceEEEEEEECC-eEEEEE
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVEDTHFSA---GTRKAVKSAFG-KVDHAFADAKSLDSSSGTTALTALILGR-TMLIAN 75 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~~~~~~~---~~~~~l~~a~~-~~~~~i~~~~~~~~~~gtT~~~~~i~~~-~l~~a~ 75 (253)
|||||||..+|+|+.+++...+.++..+.. ....+++++|. .++..+.........+|||++++++..+ ++|+||
T Consensus 80 VfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN 159 (330)
T KOG0698|consen 80 VFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVAN 159 (330)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEE
Confidence 799999999999999999999988766555 37889999999 6999998763333568888888888855 999999
Q ss_pred ecccceEEEecC-ceeECCCCCCCCChhHHHHHHHcCCeEEc----CeecCceehhhhhccccccCCCCCCCCcccCCce
Q 042247 76 AGDSRAVLGKRG-RAIELSKDHKPNVTSERLRIEKLGGVIYD----GYLNGQLAVARALGDWHIKGSKGSSCPLSSEPEL 150 (253)
Q Consensus 76 vGDSr~~l~r~~-~~~~lT~dh~~~~~~e~~ri~~~~~~i~~----~~~~~~~~~tr~lG~~~~k~~~~~~~~v~~~p~~ 150 (253)
+||||+++++.| ..++||.||+|..+.|+.||..+||++.. .|..|.+++||+|||..+|. +++.++|++
T Consensus 160 ~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~-----~~v~a~Pei 234 (330)
T KOG0698|consen 160 VGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKS-----QGVIAEPEI 234 (330)
T ss_pred cCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcC-----CcEecCCce
Confidence 999999999866 79999999999999999999999999984 39999999999999999996 368999999
Q ss_pred EEEEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCCCCCCC
Q 042247 151 EELVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQHNDPERCSKALVKEALQRNTCDNLTVVVVCFSPNPPPKIQ 228 (253)
Q Consensus 151 ~~~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~Tvivv~~~~~~~~~~~ 228 (253)
....+...|+||||+||||||.++++|++++++..+.....+..++..+.+.|..+++.||+|||||.|.+.+..+..
T Consensus 235 ~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~~~~~~ 312 (330)
T KOG0698|consen 235 QQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSPKSPSS 312 (330)
T ss_pred EEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCccccccC
Confidence 999999989999999999999999999999999976556789999999999999999999999999999987754433
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=4.5e-45 Score=303.86 Aligned_cols=210 Identities=42% Similarity=0.704 Sum_probs=177.2
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHH-HHHHHHhhcC--CCCCCCceEEEEEEECCeEEEEE
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVEDTHFS--AGTRKAVKSAFGK-VDHAFADAKS--LDSSSGTTALTALILGRTMLIAN 75 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~~~~~~--~~~~~~l~~a~~~-~~~~i~~~~~--~~~~~gtT~~~~~i~~~~l~~a~ 75 (253)
|||||||..++++++..+...+.+..... ..+.+.|..+|.. +++.+..... ....+|||++++++.++++|+||
T Consensus 38 V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~van 117 (254)
T PF00481_consen 38 VFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVAN 117 (254)
T ss_dssp EEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEE
T ss_pred EecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceeeecccccccccccccccccccccccccccccceeEEEe
Confidence 79999999999999999997776533222 2578899999999 8888876221 34569999999999999999999
Q ss_pred ecccceEEEecCcee-ECCCCCCCCChhHHHHHHHcCCeEE-cCeecCceehhhhhccccccCCCCCCCCcccCCceEEE
Q 042247 76 AGDSRAVLGKRGRAI-ELSKDHKPNVTSERLRIEKLGGVIY-DGYLNGQLAVARALGDWHIKGSKGSSCPLSSEPELEEL 153 (253)
Q Consensus 76 vGDSr~~l~r~~~~~-~lT~dh~~~~~~e~~ri~~~~~~i~-~~~~~~~~~~tr~lG~~~~k~~~~~~~~v~~~p~~~~~ 153 (253)
+||||+|+++.+... +||+||+|.++.|+.||...++.+. .++..|.+++||+||+..+|++. ++++.++|++..+
T Consensus 118 vGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~--~~~v~~~P~i~~~ 195 (254)
T PF00481_consen 118 VGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPG--KPGVIAEPDISEV 195 (254)
T ss_dssp ESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCT--SSSSB---EEEEE
T ss_pred eeeeeeeeeeccccccccccccccchhhccceeeccccccccchhhhhccccccccccccccccc--cceeeeecccccc
Confidence 999999999999988 9999999999999999999999999 78999999999999999999743 3478999999999
Q ss_pred EcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCc
Q 042247 154 VLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQHNDPERCSKALVKEALQRNTCDNL 212 (253)
Q Consensus 154 ~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~ 212 (253)
.+.++|.|||||||||||+++++|+.+++.+......+|+.+|+.|+++|.++|+.|||
T Consensus 196 ~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 196 DLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp EEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTHHSHE
T ss_pred cccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCC
Confidence 99999889999999999999999999999998766667999999999999999999996
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-43 Score=293.80 Aligned_cols=204 Identities=31% Similarity=0.425 Sum_probs=177.1
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhcCC---C--chh-HHHHHHHHHHHHHHHHHhhcC---CCCCCCceEEEEEEECCeE
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVEDTH---F--SAG-TRKAVKSAFGKVDHAFADAKS---LDSSSGTTALTALILGRTM 71 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~~~~---~--~~~-~~~~l~~a~~~~~~~i~~~~~---~~~~~gtT~~~~~i~~~~l 71 (253)
|||||||++++++|++.+++.+.+... . ... ..+.+.+++..+++.+..... ....||||++++++.++++
T Consensus 43 V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l 122 (262)
T COG0631 43 VADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKL 122 (262)
T ss_pred EEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeE
Confidence 799999999999999999988866311 1 111 578999999999999998754 3367999999999999999
Q ss_pred EEEEecccceEEEecCceeECCCCCCCCChhHHHHHHHcCCeEEcCeecCceehhhhhccccccCCCCCCCCcccCCceE
Q 042247 72 LIANAGDSRAVLGKRGRAIELSKDHKPNVTSERLRIEKLGGVIYDGYLNGQLAVARALGDWHIKGSKGSSCPLSSEPELE 151 (253)
Q Consensus 72 ~~a~vGDSr~~l~r~~~~~~lT~dh~~~~~~e~~ri~~~~~~i~~~~~~~~~~~tr~lG~~~~k~~~~~~~~v~~~p~~~ 151 (253)
|+|||||||+|++|+|+++|||.||++.+..++.++....+.... +....+||+||+.. ..+|++.
T Consensus 123 ~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~~~---~~~~~ltralG~~~-----------~~~p~~~ 188 (262)
T COG0631 123 YVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEARSH---PRRNALTRALGDFD-----------LLEPDIT 188 (262)
T ss_pred EEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHHhC---ccchhhhhhcCCCc-----------ccceeEE
Confidence 999999999999999999999999999999988886665554433 34447999999865 4899999
Q ss_pred EEEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCC
Q 042247 152 ELVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQHNDPERCSKALVKEALQRNTCDNLTVVVVCFSPNP 223 (253)
Q Consensus 152 ~~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~Tvivv~~~~~~ 223 (253)
...+.+++ |||||||||||.++++++.++++. ..+++++++.|++.|+.+++.||+|+++|.+....
T Consensus 189 ~~~~~~~d-~llL~SDGl~d~v~~~~i~~il~~----~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 189 ELELEPGD-FLLLCSDGLWDVVSDDEIVDILKN----SETPQEAADKLIELALEGGGPDNITVVLVRLNGEG 255 (262)
T ss_pred EEEcCCCC-EEEEECCCCccCcCHHHHHHHHhc----CCCHHHHHHHHHHHHHhcCCCCceEEEEEEeeccc
Confidence 99999995 899999999999999999999986 57899999999999999999999999999998765
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=3.2e-37 Score=256.02 Aligned_cols=211 Identities=45% Similarity=0.711 Sum_probs=184.1
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHHHHHHHHhhcC---CCCCCCceEEEEEEECCeEE
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVEDTHF-----SAGTRKAVKSAFGKVDHAFADAKS---LDSSSGTTALTALILGRTML 72 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~~~~~-----~~~~~~~l~~a~~~~~~~i~~~~~---~~~~~gtT~~~~~i~~~~l~ 72 (253)
|||||||+..++++++.+++.+.+.... ...+...|+++|..+++.+..... ....+|||++++++..++++
T Consensus 35 V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~ 114 (254)
T cd00143 35 VFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLY 114 (254)
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEE
Confidence 7999999999999999999888664322 345677899999999999987653 23568999999999999999
Q ss_pred EEEecccceEEEecCceeECCCCCCCCChhHHHHHHHcCCeEEcCeecCceehhhhhccccccCCCCCCCCcccCCceEE
Q 042247 73 IANAGDSRAVLGKRGRAIELSKDHKPNVTSERLRIEKLGGVIYDGYLNGQLAVARALGDWHIKGSKGSSCPLSSEPELEE 152 (253)
Q Consensus 73 ~a~vGDSr~~l~r~~~~~~lT~dh~~~~~~e~~ri~~~~~~i~~~~~~~~~~~tr~lG~~~~k~~~~~~~~v~~~p~~~~ 152 (253)
++|+||||+|++++++++++|.||++.++.+..|+...++.+.....++...+||++|...+|. ++..+|++..
T Consensus 115 ~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~~t~~lG~~~~~~------~~~~~~~~~~ 188 (254)
T cd00143 115 VANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNGRVPGVLAVTRALGDFDLKP------GVSAEPDVTV 188 (254)
T ss_pred EEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEeCEEcCceeeccccCCccccC------CEEcCCeEEE
Confidence 9999999999999999999999999999999999999999877778888999999999987663 3578999999
Q ss_pred EEc-CCCCeEEEEEcCCccccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEc
Q 042247 153 LVL-TEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQHNDPERCSKALVKEALQRNTCDNLTVVVVCF 219 (253)
Q Consensus 153 ~~l-~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~Tvivv~~ 219 (253)
+.+ .++| +|+|||||||++++++++.+++...... .+++++|+.|++.|..+++.||+|+|++++
T Consensus 189 ~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~~~~~~~-~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 189 VKLTEDDD-FLILASDGLWDVLSNQEAVDIVRSELAK-EDLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred EEeCCCCc-EEEEECCCCeeccChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 999 6666 7889999999999999999999874111 279999999999999999999999999875
No 8
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=5.7e-38 Score=285.50 Aligned_cols=210 Identities=22% Similarity=0.266 Sum_probs=156.8
Q ss_pred CccCCCchHHHHHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHHHHHhhcCC-----CCCCCceEEEEEEECCeE
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVE----DTHFSAGTRKAVKSAFGKVDHAFADAKSL-----DSSSGTTALTALILGRTM 71 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~----~~~~~~~~~~~l~~a~~~~~~~i~~~~~~-----~~~~gtT~~~~~i~~~~l 71 (253)
|||||||+.+|+.||+.+++.+.+ .........+.|+++|..+|+.+.+.... ..+||||++++++.++++
T Consensus 419 VaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l 498 (645)
T PRK14559 419 LCDGMGGHAAGEVASALAVETLQQYFQQHWQDELPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQV 498 (645)
T ss_pred EEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEE
Confidence 799999999888777777666543 11111123567999999999999865322 246999999999999999
Q ss_pred EEEEecccceEEE-ecCceeECCCCCCCCChhHHHHHHHcCCeEEcCeecCceehhhhhccccccCCCCCCCCcccCCce
Q 042247 72 LIANAGDSRAVLG-KRGRAIELSKDHKPNVTSERLRIEKLGGVIYDGYLNGQLAVARALGDWHIKGSKGSSCPLSSEPEL 150 (253)
Q Consensus 72 ~~a~vGDSr~~l~-r~~~~~~lT~dh~~~~~~e~~ri~~~~~~i~~~~~~~~~~~tr~lG~~~~k~~~~~~~~v~~~p~~ 150 (253)
|++||||||+|++ ++|+++|||+||++.+.+.+..+.. .. ...+++...+||+||+...+ ..+|++
T Consensus 499 ~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~~Gi~~---~~-a~~~p~~~~LTrALG~~~~~---------~l~Pdi 565 (645)
T PRK14559 499 AVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQRGVEP---QI-AYARPDAYQLTQALGPRDNS---------AIQPDI 565 (645)
T ss_pred EEEEecCceEEEEecCCeEEEeCCCCCHHHHHHHhCCCH---HH-HhcCcccceeeeccCCCCCC---------cccceE
Confidence 9999999999998 5689999999999764332222110 00 11235667899999985432 458999
Q ss_pred EEEEcCCCCeEEEEEcCCcccc-CCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCCC
Q 042247 151 EELVLTEEDEYLILGCDGLWDV-MSSQCAVTMVRKELMQHNDPERCSKALVKEALQRNTCDNLTVVVVCFSPNPP 224 (253)
Q Consensus 151 ~~~~l~~~d~~LvL~SDGv~d~-l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~Tvivv~~~~~~~ 224 (253)
..+.+.++| +||||||||||+ +.+..+.+.+...+....++.++++.|++.|+.+|+.||+|+|||+++..|.
T Consensus 566 ~~~~L~~gD-~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p~ 639 (645)
T PRK14559 566 QFLEIEEDT-LLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQYNGHDNITAILVRLKVRPQ 639 (645)
T ss_pred EEEEcCCCC-EEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccCCC
Confidence 999998877 788999999995 3333333344444445678999999999999999999999999999976654
No 9
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-37 Score=257.42 Aligned_cols=167 Identities=40% Similarity=0.686 Sum_probs=156.6
Q ss_pred CCceEEEEEEECCeEEEEEecccceEEEecCceeECCCCCCCCChhHHHHHHHcCCeEE-cCeecCceehhhhhcccccc
Q 042247 57 SGTTALTALILGRTMLIANAGDSRAVLGKRGRAIELSKDHKPNVTSERLRIEKLGGVIY-DGYLNGQLAVARALGDWHIK 135 (253)
Q Consensus 57 ~gtT~~~~~i~~~~l~~a~vGDSr~~l~r~~~~~~lT~dh~~~~~~e~~ri~~~~~~i~-~~~~~~~~~~tr~lG~~~~k 135 (253)
+|||+++|++.+.+++|||.||||+++.|+|+.+-++.||.|....|..||+.+||.+. .+|++|.++++|+||+..||
T Consensus 330 SGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~GDHaYK 409 (542)
T KOG0699|consen 330 SGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFGDHAYK 409 (542)
T ss_pred CCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhhhhhhh
Confidence 69999999999999999999999999999999999999999999999999999999998 89999999999999999999
Q ss_pred CCCCCCC---CcccCCceEEEEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC-----
Q 042247 136 GSKGSSC---PLSSEPELEELVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQHNDPERCSKALVKEALQRN----- 207 (253)
Q Consensus 136 ~~~~~~~---~v~~~p~~~~~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g----- 207 (253)
.....++ -|.+-|+|....+.+.|.|+|++|||||++++.+|++++++..+........++++|++.+++-.
T Consensus 410 ~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T~GDG 489 (542)
T KOG0699|consen 410 KNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPSTDGDG 489 (542)
T ss_pred cccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCCCCCC
Confidence 8765443 57889999999999999999999999999999999999999999888899999999999998852
Q ss_pred -CCCCcEEEEEEcCCCC
Q 042247 208 -TCDNLTVVVVCFSPNP 223 (253)
Q Consensus 208 -~~DN~Tvivv~~~~~~ 223 (253)
+.||+|||++.|++..
T Consensus 490 TGCDNMT~ii~~Fkrk~ 506 (542)
T KOG0699|consen 490 TGCDNMTVIITTFKRKS 506 (542)
T ss_pred cCCCcceEEEEEeccch
Confidence 6899999999998543
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=3.7e-37 Score=256.10 Aligned_cols=209 Identities=44% Similarity=0.732 Sum_probs=183.3
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHHHHHHHHhhcCCC---CCCCceEEEEEEECCeEEE
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVEDTHFS----AGTRKAVKSAFGKVDHAFADAKSLD---SSSGTTALTALILGRTMLI 73 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~~~~~~----~~~~~~l~~a~~~~~~~i~~~~~~~---~~~gtT~~~~~i~~~~l~~ 73 (253)
|||||||..+|+++++.+.+.+.+..... ..+.+.|++++..+++.+....... ..+|||++++++..+++++
T Consensus 39 v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~ 118 (255)
T smart00332 39 VFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYV 118 (255)
T ss_pred EEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEE
Confidence 79999999999999999998887643222 2477789999999999998765432 4689999999999999999
Q ss_pred EEecccceEEEecCceeECCCCCCCCChhHHHHHHHcCCeEEcCeecCceehhhhhccccccCCCCCCCCcccCCceEEE
Q 042247 74 ANAGDSRAVLGKRGRAIELSKDHKPNVTSERLRIEKLGGVIYDGYLNGQLAVARALGDWHIKGSKGSSCPLSSEPELEEL 153 (253)
Q Consensus 74 a~vGDSr~~l~r~~~~~~lT~dh~~~~~~e~~ri~~~~~~i~~~~~~~~~~~tr~lG~~~~k~~~~~~~~v~~~p~~~~~ 153 (253)
+|+||||+|+++++++.++|+||++.+..|..|+.+.++.+..+++++...+||++|...+|+ .+..+|++...
T Consensus 119 ~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~lt~~~g~~~~~~------~i~~~p~~~~~ 192 (255)
T smart00332 119 ANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGRVNGVLALSRAIGDFFLKP------YVSAEPDVTVV 192 (255)
T ss_pred EeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECCeECCeEecccccCCHhhcC------CeEeeeEEEEE
Confidence 999999999999999999999999999999999999999998888899999999999987763 46789999999
Q ss_pred Ec-CCCCeEEEEEcCCccccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 042247 154 VL-TEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQHNDPERCSKALVKEALQRNTCDNLTVVVV 217 (253)
Q Consensus 154 ~l-~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~Tvivv 217 (253)
.+ .++| +|||||||||++++++++.+++.+.... .++.++++.|++.|..++..||+|+|++
T Consensus 193 ~~~~~~d-~ill~SDGv~~~l~~~~i~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 193 ELTEKDD-FLILASDGLWDVLSNQEVVDIVRKHLSK-SDPEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred EecCCCc-EEEEECCccccCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 96 6666 8889999999999999999999875322 3699999999999999999999999985
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-37 Score=258.35 Aligned_cols=207 Identities=32% Similarity=0.538 Sum_probs=174.5
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhc-------------C---------------------CCchhHHHHHHHHHHHHHHH
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVED-------------T---------------------HFSAGTRKAVKSAFGKVDHA 46 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~~-------------~---------------------~~~~~~~~~l~~a~~~~~~~ 46 (253)
|||||||.++++++++++..++..+ . .....+.++|.+||.++++.
T Consensus 104 IyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~Af~~tee~ 183 (390)
T KOG0700|consen 104 IYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSKAFEATEED 183 (390)
T ss_pred EecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHHHHHHHHHH
Confidence 7999999999999999999877610 0 11345778999999999999
Q ss_pred HHhhcCCC-------CCCCceEEEEEEECCeEEEEEecccceEEEe---cC---ceeECCCCCCCCChhHHHHHHHcC--
Q 042247 47 FADAKSLD-------SSSGTTALTALILGRTMLIANAGDSRAVLGK---RG---RAIELSKDHKPNVTSERLRIEKLG-- 111 (253)
Q Consensus 47 i~~~~~~~-------~~~gtT~~~~~i~~~~l~~a~vGDSr~~l~r---~~---~~~~lT~dh~~~~~~e~~ri~~~~-- 111 (253)
+....... ..+|+|++++++.++.+||||+||||++|.+ ++ ...|||.||+..+++|+.||....
T Consensus 184 fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~Rir~eHPd 263 (390)
T KOG0700|consen 184 FLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVRRIRSEHPD 263 (390)
T ss_pred HHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHHHHHHhCCC
Confidence 97543221 3489999999999999999999999999954 23 478999999999999999998866
Q ss_pred --CeEEcC--eecCceehhhhhccccccCCC---------------CCCCCcccCCceEEEEcCCCCeEEEEEcCCcccc
Q 042247 112 --GVIYDG--YLNGQLAVARALGDWHIKGSK---------------GSSCPLSSEPELEELVLTEEDEYLILGCDGLWDV 172 (253)
Q Consensus 112 --~~i~~~--~~~~~~~~tr~lG~~~~k~~~---------------~~~~~v~~~p~~~~~~l~~~d~~LvL~SDGv~d~ 172 (253)
..+... |+.|.+.+|||||+..||.++ .++|+++++|.++...+.+.|+||||+|||+|++
T Consensus 264 d~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~ 343 (390)
T KOG0700|consen 264 DPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEY 343 (390)
T ss_pred CcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhh
Confidence 344455 999999999999999999864 3578899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 042247 173 MSSQCAVTMVRKELMQHNDPERCSKALVKEALQRN 207 (253)
Q Consensus 173 l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g 207 (253)
++++|++.++...+.....-+.+|+.|++.|+.+.
T Consensus 344 lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 344 LSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred cChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 99999999999876543344678999999998754
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=1e-25 Score=184.82 Aligned_cols=220 Identities=32% Similarity=0.473 Sum_probs=164.8
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhcC--------------------------------------CCc--hhHHHHHHHHH
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVEDT--------------------------------------HFS--AGTRKAVKSAF 40 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~~~--------------------------------------~~~--~~~~~~l~~a~ 40 (253)
+||||.|..+|-.|+..+...+.+.. ... .-..-+|..||
T Consensus 149 lfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViGAlEsAF 228 (493)
T KOG1323|consen 149 LFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIGALESAF 228 (493)
T ss_pred eecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhHHHHHHHH
Confidence 58999999999888877765553310 000 11345799999
Q ss_pred HHHHHHHHhhcCCC-CCCCceEEEEEEECCeEEEEEecccceEEEecCceeECCCCCCCCChhHHHHHHHcC--------
Q 042247 41 GKVDHAFADAKSLD-SSSGTTALTALILGRTMLIANAGDSRAVLGKRGRAIELSKDHKPNVTSERLRIEKLG-------- 111 (253)
Q Consensus 41 ~~~~~~i~~~~~~~-~~~gtT~~~~~i~~~~l~~a~vGDSr~~l~r~~~~~~lT~dh~~~~~~e~~ri~~~~-------- 111 (253)
+.++++|....+.- ..+|||+.+++..-+++|++|.||||++++|+++++.||.+.+|. .|++|+...+
T Consensus 229 qemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPe--tERqRlQ~Laf~~PeLlg 306 (493)
T KOG1323|consen 229 QEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPE--TERQRLQELAFRNPELLG 306 (493)
T ss_pred HHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcH--HHHHHHHHHhhcChHhhc
Confidence 99999998655433 458999999999999999999999999999999999999999984 5777776543
Q ss_pred CeEE-------------------c----------------------------CeecCceehhhhhccccccCCCCC---C
Q 042247 112 GVIY-------------------D----------------------------GYLNGQLAVARALGDWHIKGSKGS---S 141 (253)
Q Consensus 112 ~~i~-------------------~----------------------------~~~~~~~~~tr~lG~~~~k~~~~~---~ 141 (253)
+... . .++-+.+.+||.|||..+|-.... +
T Consensus 307 neFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~dsnl~iK 386 (493)
T KOG1323|consen 307 NEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVDSNLSIK 386 (493)
T ss_pred ccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeecCCcccc
Confidence 1110 0 012223569999999988765432 4
Q ss_pred CCcccCCceEEEEcCC----CCeEEEEEcCCccccCCHHHHHHHHHHHHhccC--CHH---HHHHHHHHHHHhc------
Q 042247 142 CPLSSEPELEELVLTE----EDEYLILGCDGLWDVMSSQCAVTMVRKELMQHN--DPE---RCSKALVKEALQR------ 206 (253)
Q Consensus 142 ~~v~~~p~~~~~~l~~----~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~--~~~---~~a~~l~~~a~~~------ 206 (253)
|.+.+.|++..+++.. .|+.+||+|||+||+++++|+..++...+.... +|. .+|+.++..|...
T Consensus 387 PFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~k~rgW 466 (493)
T KOG1323|consen 387 PFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQQKDRGW 466 (493)
T ss_pred hhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCccCCCce
Confidence 5778899999998862 355899999999999999999999999876543 443 5677777766432
Q ss_pred -------CCCCCcEEEEEEcCCC
Q 042247 207 -------NTCDNLTVVVVCFSPN 222 (253)
Q Consensus 207 -------g~~DN~Tvivv~~~~~ 222 (253)
|+.|||||.||.+.-.
T Consensus 467 r~~n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 467 RMNNGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred eccCCCcCCCCceEEEEEeccCC
Confidence 5789999999988654
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=4.6e-24 Score=174.68 Aligned_cols=182 Identities=17% Similarity=0.265 Sum_probs=133.2
Q ss_pred CccCCCchHH--------HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEE--CCe
Q 042247 1 VFDGHGGIDA--------ASFTKNNILGFIVEDTHFSAGTRKAVKSAFGKVDHAFADAKSLDSSSGTTALTALIL--GRT 70 (253)
Q Consensus 1 V~DG~GG~~~--------a~~a~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~gtT~~~~~i~--~~~ 70 (253)
||||+|||.- +...++.+.+.+.+....+..+...|..++.++-++ ....-+++|+++++++ +++
T Consensus 108 VADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~-----~~~~vGSSTAcI~~l~~~~~~ 182 (330)
T KOG1379|consen 108 VADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQ-----KVPIVGSSTACILALDRENGK 182 (330)
T ss_pred EccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhc-----CCCCCCcceeeeeeeecCCCe
Confidence 7999999843 333334444444443334446788888888766422 2223478888888888 889
Q ss_pred EEEEEecccceEEEecCceeECCCCCCCCChhHHHHHHHcCCeEEcCeecCceeh-------hhhhccccccCCCCCCCC
Q 042247 71 MLIANAGDSRAVLGKRGRAIELSKDHKPNVTSERLRIEKLGGVIYDGYLNGQLAV-------ARALGDWHIKGSKGSSCP 143 (253)
Q Consensus 71 l~~a~vGDSr~~l~r~~~~~~lT~dh~~~~~~e~~ri~~~~~~i~~~~~~~~~~~-------tr~lG~~~~k~~~~~~~~ 143 (253)
||.+|+|||-..++|+|++.+-|..+... ++-.+.+ ..++++
T Consensus 183 Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~-------------------FN~PyQLs~~p~~~~~~~~d------------ 231 (330)
T KOG1379|consen 183 LHTANLGDSGFLVVREGKVVFRSPEQQHY-------------------FNTPYQLSSPPEGYSSYISD------------ 231 (330)
T ss_pred EEEeeccCcceEEEECCEEEEcCchheec-------------------cCCceeeccCCccccccccC------------
Confidence 99999999999999999999998876421 1111111 122332
Q ss_pred cccCCceEEEEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHhc----------------
Q 042247 144 LSSEPELEELVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELM-QHNDPERCSKALVKEALQR---------------- 206 (253)
Q Consensus 144 v~~~p~~~~~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~-~~~~~~~~a~~l~~~a~~~---------------- 206 (253)
.....+...+.++++| +|||+||||||++.+++|.+++..... ...+++..|+.+++.|...
T Consensus 232 ~p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~ 310 (330)
T KOG1379|consen 232 VPDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAARE 310 (330)
T ss_pred CccccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHH
Confidence 2446678899999999 788999999999999999999988765 5668999999999999663
Q ss_pred -------CCCCCcEEEEEEc
Q 042247 207 -------NTCDNLTVVVVCF 219 (253)
Q Consensus 207 -------g~~DN~Tvivv~~ 219 (253)
|..||||+||..+
T Consensus 311 ~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 311 HGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred hCcccCCCCcccEEEEEecC
Confidence 4589999999753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=2.3e-20 Score=171.31 Aligned_cols=208 Identities=26% Similarity=0.451 Sum_probs=176.5
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEEC--------CeEEE
Q 042247 2 FDGHGGIDAASFTKNNILGFIVEDTHFSAGTRKAVKSAFGKVDHAFADAKSLDSSSGTTALTALILG--------RTMLI 73 (253)
Q Consensus 2 ~DG~GG~~~a~~a~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~gtT~~~~~i~~--------~~l~~ 73 (253)
+||=+..+..++....+...+.++.....+-.+.|+.+|...++++...+.. -|..++.+.+.. .++++
T Consensus 557 ~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl~~~rklg~~g~~---lg~~~~~~~i~~d~~~~asS~~l~~ 633 (1081)
T KOG0618|consen 557 FDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRNTFLRLNRKLGEEGQV---LGGSVVLCQIVEDSLSPASSKTLFA 633 (1081)
T ss_pred EcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhhhhhhcc---ccchhhheeecccccCcccchhhhH
Confidence 5666666777777777777776654444444556999999999999766654 355566666653 36899
Q ss_pred EEecccceEEEecCceeECCCCCCC-CChhHHHHHHHcCCeEE-cCeecCceehhhhhccccccCCCCCCCCcccCCceE
Q 042247 74 ANAGDSRAVLGKRGRAIELSKDHKP-NVTSERLRIEKLGGVIY-DGYLNGQLAVARALGDWHIKGSKGSSCPLSSEPELE 151 (253)
Q Consensus 74 a~vGDSr~~l~r~~~~~~lT~dh~~-~~~~e~~ri~~~~~~i~-~~~~~~~~~~tr~lG~~~~k~~~~~~~~v~~~p~~~ 151 (253)
||+|+|.++++++|+..++|+-... ..++|..||...+|++. +++.+|....||++|.+.+.+ .+.+.|++.
T Consensus 634 Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P------~v~p~Phv~ 707 (1081)
T KOG0618|consen 634 ANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLFP------HVLPDPHVS 707 (1081)
T ss_pred hhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCeecCCCeeeceeeeeeecccccccc------cccCCCcee
Confidence 9999999999999999999887744 48999999999999999 889999999999999988775 478999999
Q ss_pred EEEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCC
Q 042247 152 ELVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQHNDPERCSKALVKEALQRNTCDNLTVVVVCFSPN 222 (253)
Q Consensus 152 ~~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~Tvivv~~~~~ 222 (253)
.+.+.+.|+|||+++-++|++++-+++++.++. ..+|-.+|++|++.|...|..||++++||++...
T Consensus 708 ~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn----~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~~~ 774 (1081)
T KOG0618|consen 708 VVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRN----VEDPLLAAKKLCDLAQSYGCAENVSVLVVRLNHL 774 (1081)
T ss_pred eEecccCceEEEEcchHHhhhccHHHHHHHHhc----CCchHHHHHHHHHHHHhcccccCeeEEEEEeecc
Confidence 999999999999999999999999999999986 6899999999999999999999999999999754
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.82 E-value=6.7e-19 Score=140.52 Aligned_cols=155 Identities=23% Similarity=0.235 Sum_probs=119.0
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEE--ECCeEEEEEecc
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVEDTHFSAGTRKAVKSAFGKVDHAFADAKSLDSSSGTTALTALI--LGRTMLIANAGD 78 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~gtT~~~~~i--~~~~l~~a~vGD 78 (253)
|+||||++..|.+++..+...+.+...... .+.+.+..+|+.+.... ...+++|++++++ ..++++++|+||
T Consensus 35 v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~----~~~~~l~~~n~~l~~~~--~~~~~~T~~~~~id~~~~~l~~~~~Gd 108 (193)
T smart00331 35 IADVMGKGLAAALAMSMARSALRTLLSEGI----SLSQILERLNRAIYENG--EDGMFATLFLALYDFAGGTLSYANAGH 108 (193)
T ss_pred EEecCCCChHHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHhcC--CCCcEEEEEEEEEECCCCEEEEEeCCC
Confidence 689999999999999888888865433221 35566777777776552 3458999999998 577899999999
Q ss_pred cceEEEe-cCceeECCCCCCCCChhHHHHHHHcCCeEEcCeecCceehhhhhccccccCCCCCCCCcccCCceEEEEcCC
Q 042247 79 SRAVLGK-RGRAIELSKDHKPNVTSERLRIEKLGGVIYDGYLNGQLAVARALGDWHIKGSKGSSCPLSSEPELEELVLTE 157 (253)
Q Consensus 79 Sr~~l~r-~~~~~~lT~dh~~~~~~e~~ri~~~~~~i~~~~~~~~~~~tr~lG~~~~k~~~~~~~~v~~~p~~~~~~l~~ 157 (253)
+|+|+++ ++...+.+.+. +..+|... ..+++...+.+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~-----------------------------~~~lG~~~-----------~~~~~~~~~~l~~ 148 (193)
T smart00331 109 SPPYLLRADGGLVEDLDDL-----------------------------GAPLGLEP-----------DVEVDVRELTLEP 148 (193)
T ss_pred CceEEEECCCCeEEEcCCC-----------------------------CceeeeCC-----------CCcceeEEEeeCC
Confidence 9999999 66666666542 45567532 3457778888999
Q ss_pred CCeEEEEEcCCccccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 042247 158 EDEYLILGCDGLWDVMSSQCAVTMVRKELMQHNDPERCSKALVKEAL 204 (253)
Q Consensus 158 ~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~ 204 (253)
+| .|+|+|||+|+.++++++.+++.+.. ..+++++++++.+.+.
T Consensus 149 gd-~l~l~TDGl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 149 GD-LLLLYTDGLTEARNPERLEELLEELL--GSPPAEIAQRILEELL 192 (193)
T ss_pred CC-EEEEECCCccccCChHHHHHHHHHhc--CCCHHHHHHHHHHHHh
Confidence 98 67799999999999999998888752 3568898998888764
No 16
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.76 E-value=2.8e-18 Score=138.99 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=83.5
Q ss_pred CccCCCchHHHHHHHH----HHHHHHHhcCCCchh--HHHHHHHHHHHHHHHH------HhhcCCCCCCCceEEEEEEEC
Q 042247 1 VFDGHGGIDAASFTKN----NILGFIVEDTHFSAG--TRKAVKSAFGKVDHAF------ADAKSLDSSSGTTALTALILG 68 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~----~~~~~~~~~~~~~~~--~~~~l~~a~~~~~~~i------~~~~~~~~~~gtT~~~~~i~~ 68 (253)
||||+||...+..+++ .+.+.+......... ....++.+...+...+ .........++||++++++.+
T Consensus 29 VaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~ 108 (212)
T PF13672_consen 29 VADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIVRAFQSAKQADLELRDYGTTLLALVIDP 108 (212)
T ss_dssp EEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHSGGGTT-EE-EEEEEEET
T ss_pred EEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCceEEEEEEEC
Confidence 7999997666555444 444455444333221 2233343433433221 111223356899999999999
Q ss_pred CeEEEEEecccceEE-EecCceeECCCCCCCCChhHHHHHHHcCCeEEcCeecCceehhhhhccccccCCCCCCCCcccC
Q 042247 69 RTMLIANAGDSRAVL-GKRGRAIELSKDHKPNVTSERLRIEKLGGVIYDGYLNGQLAVARALGDWHIKGSKGSSCPLSSE 147 (253)
Q Consensus 69 ~~l~~a~vGDSr~~l-~r~~~~~~lT~dh~~~~~~e~~ri~~~~~~i~~~~~~~~~~~tr~lG~~~~k~~~~~~~~v~~~ 147 (253)
+.++++|+||||+|+ .++|++.+++.+|+. +..+ .++.+.... ....
T Consensus 109 ~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~----~~~~------------------~~~~~~~~~----------~~~~ 156 (212)
T PF13672_consen 109 DKVYIFNIGDSRIYVIRRNGEIQQLTDDHSG----EYPN------------------QTRSLTGDD----------PEPD 156 (212)
T ss_dssp TEEEEEEESS-EEEEEEETTEEEE-S---BH----HHHH------------------CTTSCCHHC----------CCTE
T ss_pred CEEEEEEECCCeEEEEECCCEEEEcCCCccc----hhhh------------------hhhccCccc----------cccC
Confidence 999999999999965 689999999999962 1111 033333211 1233
Q ss_pred CceEEEEcCCCCeEEEEEcCCccccCCHHH-HHHHHHHHHh
Q 042247 148 PELEELVLTEEDEYLILGCDGLWDVMSSQC-AVTMVRKELM 187 (253)
Q Consensus 148 p~~~~~~l~~~d~~LvL~SDGv~d~l~~~e-i~~~~~~~~~ 187 (253)
.++..+.+.+++ .|+|||||||+.+...+ +..++.+.+.
T Consensus 157 ~~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~~~l~~~~~ 196 (212)
T PF13672_consen 157 VQYGSIPLEEGD-VILLCSDGVWDNLRSYEDLEQFLKDLWN 196 (212)
T ss_dssp TEEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH------
T ss_pred CeEEEEEcCCCC-EEEEECcCccccCCCHHHHHHHhhhccc
Confidence 466677777888 56699999999998654 6677766544
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.74 E-value=1.6e-16 Score=149.62 Aligned_cols=169 Identities=17% Similarity=0.200 Sum_probs=123.2
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEE--CCeEEEEEecc
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVEDTHFSAGTRKAVKSAFGKVDHAFADAKSLDSSSGTTALTALIL--GRTMLIANAGD 78 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~gtT~~~~~i~--~~~l~~a~vGD 78 (253)
|+||+|++..|..++..+.+.+.+......+ ...++..+|+.+..... ..+.+|+.+++++ .+++.++|+|+
T Consensus 585 laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~lN~~L~~~~~--~~~faTl~l~~IDl~~g~~~~~~aG~ 658 (764)
T TIGR02865 585 ISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKTVNSILSLRST--DEKFSTLDLSVIDLYTGQAEFVKVGA 658 (764)
T ss_pred EEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCC--CCeEEEEEEEEEECCCCeEEEEecCC
Confidence 6899998888887777776665432111111 25577778877654422 3478999999996 67899999999
Q ss_pred cceEEEecCceeECCCCCCCCChhHHHHHHHcCCeEEcCeecCceehhhhhccccccCCCCCCCCcccCCceEEEEcCCC
Q 042247 79 SRAVLGKRGRAIELSKDHKPNVTSERLRIEKLGGVIYDGYLNGQLAVARALGDWHIKGSKGSSCPLSSEPELEELVLTEE 158 (253)
Q Consensus 79 Sr~~l~r~~~~~~lT~dh~~~~~~e~~ri~~~~~~i~~~~~~~~~~~tr~lG~~~~k~~~~~~~~v~~~p~~~~~~l~~~ 158 (253)
++.|+.|++++.+++..+-| +|-.. ..+++....++.+|
T Consensus 659 ~p~~i~r~~~v~~i~s~~lP------------------------------lGil~-----------~~~~~~~~~~L~~G 697 (764)
T TIGR02865 659 VPSFIKRGAKVEVIRSSNLP------------------------------IGILD-----------EVDVELVRKKLKNG 697 (764)
T ss_pred CceEEEECCEEEEecCCCce------------------------------eEecc-----------CCccceEEEEeCCC
Confidence 99999999999888754432 34321 34667788889999
Q ss_pred CeEEEEEcCCccccCCHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHhcC---CCCCcEEEEEEc
Q 042247 159 DEYLILGCDGLWDVMSSQC-----AVTMVRKELMQHNDPERCSKALVKEALQRN---TCDNLTVVVVCF 219 (253)
Q Consensus 159 d~~LvL~SDGv~d~l~~~e-----i~~~~~~~~~~~~~~~~~a~~l~~~a~~~g---~~DN~Tvivv~~ 219 (253)
| +|+|+|||+||..++.+ +.+++... ...+|+++++.|++.+.+.. ..||+|++++++
T Consensus 698 D-~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~--~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 698 D-LIVMVSDGVLEGEKEVEGKVLWLVRKLKET--NTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred C-EEEEECCCCCcCCcccccHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 9 78899999999876532 44444431 24589999999999998653 379999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.63 E-value=2.4e-14 Score=114.02 Aligned_cols=171 Identities=20% Similarity=0.206 Sum_probs=110.3
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEE--CCeEEEEEecc
Q 042247 1 VFDGHGGIDAASFTKNNILGFIVEDTHFSAGTRKAVKSAFGKVDHAFADAKSLDSSSGTTALTALIL--GRTMLIANAGD 78 (253)
Q Consensus 1 V~DG~GG~~~a~~a~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~gtT~~~~~i~--~~~l~~a~vGD 78 (253)
|+|++|.+-.|.+.+..+...+......... ..+.+..+|+.+....... ...+|++++.++ .++++++|+|+
T Consensus 9 v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~-~~~~t~~~~~~d~~~~~l~~~~aG~ 83 (193)
T PF07228_consen 9 VGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD-NRYATACYAIIDPETGTLTYANAGH 83 (193)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT-STTEEEEEEEEETTTTEEEEEEESS
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc-cccceEEEEEecccceEEEEeCCCC
Confidence 5799996666666655555555332211111 4456666666664333321 367888888877 56799999999
Q ss_pred cceEEEec--CceeECCCCCCCCChhHHHHHHHcCCeEEcCeecCceehhhhhccccccCCCCCCCCcccCCceEEEEcC
Q 042247 79 SRAVLGKR--GRAIELSKDHKPNVTSERLRIEKLGGVIYDGYLNGQLAVARALGDWHIKGSKGSSCPLSSEPELEELVLT 156 (253)
Q Consensus 79 Sr~~l~r~--~~~~~lT~dh~~~~~~e~~ri~~~~~~i~~~~~~~~~~~tr~lG~~~~k~~~~~~~~v~~~p~~~~~~l~ 156 (253)
++.+++++ +....+..... .+|... ...+....+.+.
T Consensus 84 ~~~l~~~~~~~~~~~~~~~~~------------------------------~lG~~~-----------~~~~~~~~~~l~ 122 (193)
T PF07228_consen 84 PPPLLLRPGGREIEQLESEGP------------------------------PLGIFE-----------DIDYQEQEIQLE 122 (193)
T ss_dssp SEEEEEETTCTEEEEETCSSB------------------------------BCSSSC-----------TTCEEEEEEE--
T ss_pred CCEEEEeccccceeecccCcc------------------------------ceeeec-----------cccccceEEEec
Confidence 99999999 34444433222 145322 345566788888
Q ss_pred CCCeEEEEEcCCccccCCHH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCCCcEEEEEEcC
Q 042247 157 EEDEYLILGCDGLWDVMSSQ-------CAVTMVRKELMQHNDPERCSKALVKEALQR---NTCDNLTVVVVCFS 220 (253)
Q Consensus 157 ~~d~~LvL~SDGv~d~l~~~-------ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~---g~~DN~Tvivv~~~ 220 (253)
++| .|+|+|||++|....+ ++.+++.+. ...+++++++.+.+.+... ...||+|+++++++
T Consensus 123 ~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 123 PGD-RLLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp TTE-EEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred ccc-EEEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 888 6779999999998543 234444432 3467899999999998873 47899999999874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.78 E-value=1e-06 Score=77.24 Aligned_cols=137 Identities=15% Similarity=0.210 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCceEEEEEEE--CCeEEEEEecccceEEEecCce---eECCCCCCCCChhHHHHHHHcCC
Q 042247 38 SAFGKVDHAFADAKSLDSSSGTTALTALIL--GRTMLIANAGDSRAVLGKRGRA---IELSKDHKPNVTSERLRIEKLGG 112 (253)
Q Consensus 38 ~a~~~~~~~i~~~~~~~~~~gtT~~~~~i~--~~~l~~a~vGDSr~~l~r~~~~---~~lT~dh~~~~~~e~~ri~~~~~ 112 (253)
+.+..+|+.+......+ +-+|+..++++ .+.+.++|+|---.++++.++- ..++.
T Consensus 214 ~~l~~~n~~~~~~~~~~--~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~~------------------ 273 (367)
T COG2208 214 DVLETLNRVLKQNLEED--MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLTA------------------ 273 (367)
T ss_pred HHHHHHHHHHHhcccCC--cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEccC------------------
Confidence 35566666655444433 78888888887 6789999999999999987653 33332
Q ss_pred eEEcCeecCceehhhhhccccccCCCCCCCCcccCCceEEEEcCCCCeEEEEEcCCccc-------cCCHHHHHHHHHHH
Q 042247 113 VIYDGYLNGQLAVARALGDWHIKGSKGSSCPLSSEPELEELVLTEEDEYLILGCDGLWD-------VMSSQCAVTMVRKE 185 (253)
Q Consensus 113 ~i~~~~~~~~~~~tr~lG~~~~k~~~~~~~~v~~~p~~~~~~l~~~d~~LvL~SDGv~d-------~l~~~ei~~~~~~~ 185 (253)
....+|... ...+.+....+.+|| .+++.||||.+ .+..+...+++.+
T Consensus 274 ------------~g~piG~~~-----------~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~- 328 (367)
T COG2208 274 ------------LGLPIGLLP-----------DYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGR- 328 (367)
T ss_pred ------------CCceeeecC-----------CccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHH-
Confidence 134466533 556777888888977 78899999999 3555666767665
Q ss_pred HhccCCHHHHHHHHHHHHHhcC----CCCCcEEEEEEcC
Q 042247 186 LMQHNDPERCSKALVKEALQRN----TCDNLTVVVVCFS 220 (253)
Q Consensus 186 ~~~~~~~~~~a~~l~~~a~~~g----~~DN~Tvivv~~~ 220 (253)
....+++++++.+.+...+.. ..||+|++++++.
T Consensus 329 -~~~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 329 -LLGQPAEEILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred -HhCCCHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 235678888888888776643 4688999999975
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=66.29 E-value=43 Score=28.47 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCceEEEEEEE--CCeEEEEEecccceEEEecCce
Q 042247 36 VKSAFGKVDHAFADAKSLDSSSGTTALTALIL--GRTMLIANAGDSRAVLGKRGRA 89 (253)
Q Consensus 36 l~~a~~~~~~~i~~~~~~~~~~gtT~~~~~i~--~~~l~~a~vGDSr~~l~r~~~~ 89 (253)
..+.+..+|+.+....... .-|+..++++ .+++.+++.|-...++..++.+
T Consensus 207 p~~~l~~lN~~l~~~~~~~---~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 207 LGALLKQVNHLLRQANLPG---QFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred HHHHHHHHHHHHHhcCCCc---eeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 3556677888777653221 2578888887 4579999999999885444433
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=49.42 E-value=11 Score=24.81 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=18.7
Q ss_pred ccCCceEEEE-cC-CCCeEEEEEcCCccccCCHH
Q 042247 145 SSEPELEELV-LT-EEDEYLILGCDGLWDVMSSQ 176 (253)
Q Consensus 145 ~~~p~~~~~~-l~-~~d~~LvL~SDGv~d~l~~~ 176 (253)
...|....+. +. +|. .+++++||+|=.+...
T Consensus 12 v~vPr~g~l~~l~~~G~-Rllva~nGv~lEv~r~ 44 (72)
T PF09436_consen 12 VMVPRFGALEPLERPGH-RLLVASNGVFLEVRRP 44 (72)
T ss_pred eecCCCCCCCccccCCc-EEEEecCcEEEEEech
Confidence 3344444333 33 455 5669999999876554
No 22
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=48.82 E-value=28 Score=27.39 Aligned_cols=47 Identities=15% Similarity=0.337 Sum_probs=31.2
Q ss_pred EEEEEcCCccc-----------cCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 042247 161 YLILGCDGLWD-----------VMSSQCAVTMVRKELMQHNDPERCSKALVKEALQRN 207 (253)
Q Consensus 161 ~LvL~SDGv~d-----------~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g 207 (253)
.++..|.|+|. ++.++..-+.+..-+.+..=|.+.|..|++.-.+||
T Consensus 73 TvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 73 TVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred eeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 56688888874 455554444444433334458999999999887775
No 23
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=48.38 E-value=1.2e+02 Score=23.27 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=40.5
Q ss_pred CCCeEEEEEcCCccccCCHHHHHHHHHH----HHhccCCHHHHHHHHHHHHHhc-CCCCCcEEEEEEcC
Q 042247 157 EEDEYLILGCDGLWDVMSSQCAVTMVRK----ELMQHNDPERCSKALVKEALQR-NTCDNLTVVVVCFS 220 (253)
Q Consensus 157 ~~d~~LvL~SDGv~d~l~~~ei~~~~~~----~~~~~~~~~~~a~~l~~~a~~~-g~~DN~Tvivv~~~ 220 (253)
+++.++++..||.-.-.........+.. .+....++.++.+.+-+..... ....-+|++++.++
T Consensus 27 ~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~~~~~l~~~n~~l~~~~~~~~~~T~~~~~id 95 (193)
T smart00331 27 PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGISLSQILERLNRAIYENGEDGMFATLFLALYD 95 (193)
T ss_pred CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCcEEEEEEEEEE
Confidence 4445788999999877666554444433 3333346788877666655554 34456788887774
No 24
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=45.73 E-value=1.2e+02 Score=22.16 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=45.3
Q ss_pred EEcCCccccCCHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCCC
Q 042247 164 LGCDGLWDVMSSQCAVTMVRKELMQH--NDPERCSKALVKEALQRNTCDNLTVVVVCFSPNPP 224 (253)
Q Consensus 164 L~SDGv~d~l~~~ei~~~~~~~~~~~--~~~~~~a~~l~~~a~~~g~~DN~Tvivv~~~~~~~ 224 (253)
..||=+-|.++-.++.+.+.+.+... .-++..|+++.+..+.+- ..++.+=+.+.++..
T Consensus 43 ~~~Ddl~dtl~Y~~v~~~i~~~v~~~~~~LiE~lA~~ia~~l~~~~--~~v~~~~v~v~KP~a 103 (121)
T COG1539 43 AESDDLADTLNYAEVSELIKEIVEGKRFALIETLAEEIADLLLARF--PRVELVEVKVTKPKA 103 (121)
T ss_pred cCccchhheecHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHhhC--CccEEEEEEEECCCC
Confidence 55788999999999999998877643 246788888888888754 678888777766543
No 25
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=45.50 E-value=1.1e+02 Score=21.82 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=41.6
Q ss_pred EEcCCccccCCHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCC
Q 042247 164 LGCDGLWDVMSSQCAVTMVRKELMQ--HNDPERCSKALVKEALQRNTCDNLTVVVVCFSPNP 223 (253)
Q Consensus 164 L~SDGv~d~l~~~ei~~~~~~~~~~--~~~~~~~a~~l~~~a~~~g~~DN~Tvivv~~~~~~ 223 (253)
-.||-+-+.++-..+.+.+.+.+.. ....+.+|+.+.+..+.. .+.+.-+-+++.+..
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~--~~~v~~v~v~v~K~~ 101 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLED--YPKVSAIKVKVEKPN 101 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHh--CCCceEEEEEEECCC
Confidence 4678888899999999998887653 346788899999988876 234445555555443
No 26
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=45.06 E-value=99 Score=28.43 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=22.3
Q ss_pred cEEEEEEc-CCCCCCCCCCCCCccCCCCChhhH
Q 042247 212 LTVVVVCF-SPNPPPKIQIPKSHKRRSISAEGL 243 (253)
Q Consensus 212 ~Tvivv~~-~~~~~~~~~~~~~~~~~~~~~~~~ 243 (253)
++..|++. ++.+..-+.+|+....+.+-...|
T Consensus 332 i~ltvAk~~DP~~q~~fTipr~epvrPIDp~aw 364 (626)
T KOG3571|consen 332 IKLTVAKCWDPNPQSYFTIPRGEPVRPIDPAAW 364 (626)
T ss_pred eEEEEeeccCCCCcccccCCCCCcCCcCCHHHH
Confidence 77777775 456666778888877777665554
No 27
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=44.68 E-value=47 Score=20.86 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 042247 173 MSSQCAVTMVRKELMQHNDPERCSKALVKE 202 (253)
Q Consensus 173 l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~ 202 (253)
-+++||..++... .-+|.+++++|+.+
T Consensus 19 hse~eIya~L~ec---nMDpnea~qrLL~q 45 (60)
T PF06972_consen 19 HSEEEIYAMLKEC---NMDPNEAVQRLLSQ 45 (60)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHhc
Confidence 5788999998886 67899999999863
No 28
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=41.32 E-value=1e+02 Score=20.18 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 042247 174 SSQCAVTMVRKELMQHNDPERCSKALVKEALQRNTCDNLTVVVV 217 (253)
Q Consensus 174 ~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~Tvivv 217 (253)
.+.++.+++.+.+.. .++...++.|...|.+.-+. ++.||+.
T Consensus 7 n~~~L~~ii~~~~~~-~~~~~s~~~Iq~~~e~~f~~-~f~vIcs 48 (76)
T PF04155_consen 7 NSEELRKIILKNMKE-CNLSISKRAIQKAAEKRFGG-SFEVICS 48 (76)
T ss_pred CCHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHhCC-CEEEEEe
Confidence 456788888887654 67888888887777665443 7777764
No 29
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=39.84 E-value=20 Score=24.88 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=31.8
Q ss_pred cCCCCeEEEEEcCCccccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcEE
Q 042247 155 LTEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQHNDPERCSKALVKEALQRNTCDNLTV 214 (253)
Q Consensus 155 l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DN~Tv 214 (253)
+.++|. ++|+.|||+-.+...+..+.++. .| .-+-.+-+-..+||-.+.++-
T Consensus 22 l~~~D~-vlL~qdGV~aAl~~~~~~~sl~~------~p-~~~~alkeDl~ARGl~~~~s~ 73 (96)
T COG2168 22 LTEGDA-VLLLQDGVYAALKGNRYLASLRE------SP-IKVYALKEDLLARGLTGQISR 73 (96)
T ss_pred hcccCe-EEEEcccchhhhcCcHHHHHHhc------Cc-cceeeehhhHHhccchhhcCc
Confidence 457785 55999999999988776655544 22 222224445556665554443
No 30
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=36.60 E-value=63 Score=16.49 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=16.3
Q ss_pred EEEECCeEEEEEecccceEEE
Q 042247 64 ALILGRTMLIANAGDSRAVLG 84 (253)
Q Consensus 64 ~~i~~~~l~~a~vGDSr~~l~ 84 (253)
++-.++.+|++-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 334788999999999888754
No 31
>PRK15322 invasion protein OrgB; Provisional
Probab=31.99 E-value=2.6e+02 Score=22.47 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=36.0
Q ss_pred EEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHh
Q 042247 153 LVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQHND-PERCSKALVKEALQ 205 (253)
Q Consensus 153 ~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~~-~~~~a~~l~~~a~~ 205 (253)
+....+..|+ +|||----.+++++.++.....+....+ ....|+.|-+.++.
T Consensus 142 i~yhd~~rFV-~~~g~qIaEFsPq~~v~~a~~~l~~~~d~~~~~~r~ls~~~l~ 194 (210)
T PRK15322 142 LKYHQEQRFI-MSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAIN 194 (210)
T ss_pred EEEcCCCceE-EEeCCchhccCHHHHHHHHHHHHHhCccchHHHHHHHhHHHHH
Confidence 4444555566 8888877789999988888777765554 66666666666654
No 32
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=31.92 E-value=1.9e+02 Score=20.65 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=41.4
Q ss_pred EEcCCccccCCHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCC
Q 042247 164 LGCDGLWDVMSSQCAVTMVRKELMQH--NDPERCSKALVKEALQRNTCDNLTVVVVCFSPNP 223 (253)
Q Consensus 164 L~SDGv~d~l~~~ei~~~~~~~~~~~--~~~~~~a~~l~~~a~~~g~~DN~Tvivv~~~~~~ 223 (253)
-.||-+-+.++-..+.+.+...+.+. ...+.+|+.+.+..+..-.. .-+-+++.++.
T Consensus 42 ~~~Ddl~~tidY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~~---~~v~v~v~Kp~ 100 (119)
T PRK11593 42 AKSDDVADCLSYADIAETVISHVEGARFALVERVAEEVAELLLARFNS---PWVRIKLSKPG 100 (119)
T ss_pred ccccCHhhccCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCCC---cEEEEEEECCC
Confidence 45888999999999999998877543 46788999999988876432 33445555443
No 33
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=29.51 E-value=2.6e+02 Score=21.34 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=42.6
Q ss_pred CCeEEEEEcCCccccCCHH----HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--CCcEEEEEEcCCCC
Q 042247 158 EDEYLILGCDGLWDVMSSQ----CAVTMVRKELMQHNDPERCSKALVKEALQRNTC--DNLTVVVVCFSPNP 223 (253)
Q Consensus 158 ~d~~LvL~SDGv~d~l~~~----ei~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~--DN~Tvivv~~~~~~ 223 (253)
++.++++..|+.-.-+... .+..+++.......+|.++.+.+-+.....-.. --+|++++.++...
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~~~ 73 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLDPEELLEALNRRLYRDLKGDNRYATACYAIIDPET 73 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEETTT
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhccccceEEEEEecccc
Confidence 4568888889776655444 344455555555667899888777776343333 46777777776553
No 34
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=27.47 E-value=2.3e+02 Score=20.09 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=39.6
Q ss_pred EEcCCccccCCHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCC
Q 042247 164 LGCDGLWDVMSSQCAVTMVRKELMQH--NDPERCSKALVKEALQRNTCDNLTVVVVCFSPN 222 (253)
Q Consensus 164 L~SDGv~d~l~~~ei~~~~~~~~~~~--~~~~~~a~~l~~~a~~~g~~DN~Tvivv~~~~~ 222 (253)
-.||.+-+.++-.++.+.+...+.+. ...+.+|+.+.+..+.... .+.-+-+++.+.
T Consensus 41 ~~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~--~v~~v~v~i~Kp 99 (116)
T TIGR00525 41 AESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFP--QVQRVKVRVSKP 99 (116)
T ss_pred hccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCC--CceEEEEEEEeC
Confidence 45788888999999999888876532 3567889999988887532 234444444443
No 35
>PRK05457 heat shock protein HtpX; Provisional
Probab=26.87 E-value=1e+02 Score=26.10 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHhc
Q 042247 147 EPELEELVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQ 188 (253)
Q Consensus 147 ~p~~~~~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~ 188 (253)
.|.-......+.. .+|+.|+|+.+.++++|+..++...+.+
T Consensus 104 ~~NAfa~G~~~~~-~~V~vt~gLl~~L~~~El~aVlAHElgH 144 (284)
T PRK05457 104 EINAFATGASKNN-SLVAVSTGLLQNMSRDEVEAVLAHEISH 144 (284)
T ss_pred CceEEEecCCCCC-eEEEeehHHhhhCCHHHHHHHHHHHHHH
Confidence 3444444444445 5669999999999999999988876643
No 36
>PRK03072 heat shock protein HtpX; Provisional
Probab=25.72 E-value=87 Score=26.53 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHhc
Q 042247 148 PELEELVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQ 188 (253)
Q Consensus 148 p~~~~~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~ 188 (253)
|+-...-..+.. .+|.+|||+.+.++++|+..++...+.+
T Consensus 98 ~NAFa~G~~~~~-~~v~vt~gLl~~l~~~El~aVlAHElgH 137 (288)
T PRK03072 98 PNAFATGRNPRN-AAVCCTEGILQILNERELRGVLGHELSH 137 (288)
T ss_pred CceEEecCCCCC-cEEEecHHHHHhCCHHHHHHHHHHHHHH
Confidence 333333333333 4568899999999999998888776643
No 37
>PRK02391 heat shock protein HtpX; Provisional
Probab=25.53 E-value=90 Score=26.60 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHh
Q 042247 148 PELEELVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELM 187 (253)
Q Consensus 148 p~~~~~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~ 187 (253)
|.-...-..+.. -+|+.|||+.+.++++|+..++...+.
T Consensus 104 ~NAfa~G~~~~~-~~V~vt~gLl~~L~~~El~aVlaHElg 142 (296)
T PRK02391 104 PNAFATGRSPKN-AVVCVTTGLMRRLDPDELEAVLAHELS 142 (296)
T ss_pred CceEEecCCCCC-cEEEecHHHHhhCCHHHHHHHHHHHHH
Confidence 444444433444 456999999999999999888877654
No 38
>PRK03982 heat shock protein HtpX; Provisional
Probab=25.39 E-value=1.1e+02 Score=25.93 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHh
Q 042247 148 PELEELVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELM 187 (253)
Q Consensus 148 p~~~~~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~ 187 (253)
|+-......+.+ -.|..|||+.+.++++|+..++...+.
T Consensus 96 ~NAfa~G~~~~~-~~V~vt~gLl~~l~~~El~AVlAHElg 134 (288)
T PRK03982 96 PNAFATGRDPKH-AVVAVTEGILNLLNEDELEGVIAHELT 134 (288)
T ss_pred cceEEeccCCCC-eEEEeehHHHhhCCHHHHHHHHHHHHH
Confidence 444444444444 355889999999999999988877654
No 39
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.33 E-value=3.4e+02 Score=22.60 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=25.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhc------CCCCCcEEEEEE
Q 042247 179 VTMVRKELMQHNDPERCSKALVKEALQR------NTCDNLTVVVVC 218 (253)
Q Consensus 179 ~~~~~~~~~~~~~~~~~a~~l~~~a~~~------g~~DN~Tvivv~ 218 (253)
..+++..|+..-+ .+-|..|+.+|.+. ++.-|+.+.||+
T Consensus 172 msvlEsr~k~dlt-~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~ 216 (271)
T KOG0173|consen 172 MSVLESRWKPDLT-KEEAIKLVCEAIAAGIFNDLGSGSNVDLCVIT 216 (271)
T ss_pred HHHHHHhcCcccC-HHHHHHHHHHHHHhhhccccCCCCceeEEEEe
Confidence 3456655543333 34455588888776 467899999998
No 40
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=23.02 E-value=2e+02 Score=19.06 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=23.3
Q ss_pred CeEEEEEcCCccccCCHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 042247 159 DEYLILGCDGLWDVMSSQCAVTMVRKELMQHNDPERCSKALVK 201 (253)
Q Consensus 159 d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~ 201 (253)
+.++|+...|. +.-+++...+.+.+....+..++++.|.+
T Consensus 16 ~~~Vl~~p~~~---~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~ 55 (81)
T TIGR03859 16 DCYVLLYPEGM---VKLNDSAGEILELCDGKRSLAEIIQELAQ 55 (81)
T ss_pred CcEEEEcCCce---eeeChHHHHHHHHccCCCcHHHHHHHHHH
Confidence 34666666553 44455566666666656666666665544
No 41
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=22.77 E-value=2e+02 Score=17.85 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHH
Q 042247 177 CAVTMVRKELMQHNDPERCSKALVK 201 (253)
Q Consensus 177 ei~~~~~~~~~~~~~~~~~a~~l~~ 201 (253)
+....+++.+....+..++++.+.+
T Consensus 17 ~~a~~Iw~~~~g~~t~~ei~~~l~~ 41 (68)
T PF05402_consen 17 ETAAFIWELLDGPRTVEEIVDALAE 41 (68)
T ss_dssp THHHHHHHH--SSS-HHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHH
Confidence 3444444444444445555554443
No 42
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=22.50 E-value=4.4e+02 Score=21.74 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=21.9
Q ss_pred CCeEEEEEecccceEE--EecCceeECCCCCCC
Q 042247 68 GRTMLIANAGDSRAVL--GKRGRAIELSKDHKP 98 (253)
Q Consensus 68 ~~~l~~a~vGDSr~~l--~r~~~~~~lT~dh~~ 98 (253)
.+++...---||.+.+ +|+|..+|--..|+.
T Consensus 242 sgrll~sg~~dssc~lydirg~r~iq~f~phsa 274 (350)
T KOG0641|consen 242 SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA 274 (350)
T ss_pred CcceeeeccCCCceEEEEeeCCceeeeeCCCcc
Confidence 4566666666777655 689999887777763
No 43
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.25 E-value=2.5e+02 Score=23.95 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=19.6
Q ss_pred EEcCCccccCCHHHHHHHHHHHHh
Q 042247 164 LGCDGLWDVMSSQCAVTMVRKELM 187 (253)
Q Consensus 164 L~SDGv~d~l~~~ei~~~~~~~~~ 187 (253)
+-.-||.-|++++++..++...-.
T Consensus 174 ~iaEGLl~YL~~~~v~~ll~~I~~ 197 (297)
T COG3315 174 WIAEGLLMYLPEEAVDRLLSRIAA 197 (297)
T ss_pred EEeccccccCCHHHHHHHHHHHHH
Confidence 556899999999999888877543
No 44
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=21.07 E-value=1.3e+02 Score=25.31 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=17.8
Q ss_pred CCceEEEEEEECCeEEEEEeccc
Q 042247 57 SGTTALTALILGRTMLIANAGDS 79 (253)
Q Consensus 57 ~gtT~~~~~i~~~~l~~a~vGDS 79 (253)
+|||.+.+ +.++.+|..|+|-+
T Consensus 132 SGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 132 SGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp SS-EEEEE-EETTEEEEEEEEES
T ss_pred CCCEEEEE-EcCCeEEEEEcCCC
Confidence 78888777 57889999999976
No 45
>PRK04897 heat shock protein HtpX; Provisional
Probab=20.90 E-value=1.3e+02 Score=25.62 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=29.3
Q ss_pred CceEEEEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHhc
Q 042247 148 PELEELVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQ 188 (253)
Q Consensus 148 p~~~~~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~ 188 (253)
|+-......+.. -.|+.|+|+.+.++++|+..++...+.+
T Consensus 108 ~NAfa~G~~~~~-~~v~vt~gLl~~l~~~El~aVlAHElgH 147 (298)
T PRK04897 108 PNAFATGSSPKN-AAVAVTTGLLAIMNREELEGVIGHEISH 147 (298)
T ss_pred CceEEeccCCCC-cEEEeehHHHhhCCHHHHHHHHHHHHHH
Confidence 444444444444 4569999999999999999988876643
No 46
>PRK02870 heat shock protein HtpX; Provisional
Probab=20.73 E-value=1.4e+02 Score=25.93 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHhc
Q 042247 148 PELEELVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELMQ 188 (253)
Q Consensus 148 p~~~~~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~~ 188 (253)
|.-..+...+.+. .|..|||+.+.++++|+..++...+.+
T Consensus 144 ~NAFA~G~~~~~~-~Ivvt~GLL~~L~~dEL~aVlAHELgH 183 (336)
T PRK02870 144 MNAFASGYSEKSA-MVAITTGLLEKLDRDELQAVMAHELSH 183 (336)
T ss_pred CceEEecCCCCCc-EEEEehHHhhhCCHHHHHHHHHHHHHH
Confidence 3333333334443 448999999999999998888776543
No 47
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=20.45 E-value=3.1e+02 Score=19.13 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=39.0
Q ss_pred cCCccccCCHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhcCC-CCCcEEEE
Q 042247 166 CDGLWDVMSSQCAVTMVRKELMQ--HNDPERCSKALVKEALQRNT-CDNLTVVV 216 (253)
Q Consensus 166 SDGv~d~l~~~ei~~~~~~~~~~--~~~~~~~a~~l~~~a~~~g~-~DN~Tviv 216 (253)
||-+-+.++-.++.+.+.+.+.+ ....+.+|+.+.+..+.... .+.+++-+
T Consensus 41 ~D~l~~tvdY~~l~~~i~~~~~~~~f~llE~la~~i~~~i~~~~~~v~~v~v~v 94 (113)
T PF02152_consen 41 SDDLDDTVDYAELAEAIRELVENSHFNLLETLAERIADRILKEFPQVQSVTVKV 94 (113)
T ss_dssp HTTGGGSSHHHHHHHHHHHHHHSSEESSHHHHHHHHHHHHHHHTTTESEEEEEE
T ss_pred ccccccccCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhCCCccEEEEEE
Confidence 58888999999999999887753 35789999999999988743 44444443
No 48
>PRK01345 heat shock protein HtpX; Provisional
Probab=20.31 E-value=1.4e+02 Score=25.71 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCeEEEEEcCCccccCCHHHHHHHHHHHHh
Q 042247 148 PELEELVLTEEDEYLILGCDGLWDVMSSQCAVTMVRKELM 187 (253)
Q Consensus 148 p~~~~~~l~~~d~~LvL~SDGv~d~l~~~ei~~~~~~~~~ 187 (253)
|+-...-..+.. -.|+.|+|+.+.++++|+..++...+.
T Consensus 95 ~NAFa~G~~~~~-~~V~vt~gLL~~L~~dEL~aVlAHElg 133 (317)
T PRK01345 95 PNAFATGRNPEN-AAVAATTGLLQRLSPEEVAGVMAHELA 133 (317)
T ss_pred cceEEecCCCCC-eEEEechHHHhhCCHHHHHHHHHHHHH
Confidence 333333333334 356999999999999999988877664
Done!