BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042249
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 301 bits (771), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 150/259 (57%), Positives = 193/259 (74%), Gaps = 8/259 (3%)
Query: 1 MDLEPGAFKALMKSRESSFRLPPVYPVGPLILTG--SINESDRTDCLKWLDDQPNGSVLF 58
+LEP A KAL +E PPVYPVGPL+ G +++ ++CLKWLD+QP GSVL+
Sbjct: 216 FELEPNAIKAL---QEPGLDKPPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLY 272
Query: 59 VCFGSGGSLSQKQLNELALGLEMSGQRFLWVVKCPDEKATNATYFGVHGMKEENPFDYLP 118
V FGSGG+L+ +QLNELALGL S QRFLWV++ P A N++YF H + +P +LP
Sbjct: 273 VSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIA-NSSYFDSHS--QTDPLTFLP 329
Query: 119 KGFLDRTKGVGLVVPSWAPQIQVLSHGSTGGFLSHCGWNSVLESIVHGVPIIAWPLYAEQ 178
GFL+RTK G V+P WAPQ QVL+H STGGFL+HCGWNS LES+V G+P+IAWPLYAEQ
Sbjct: 330 PGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQ 389
Query: 179 KMNAVLLTDDLKVAWRVKVNEDGLVGREEVATYARGLIQGEDGKLLRDKMRVLKDAAANA 238
KMNAVLL++D++ A R + +DGLV REEVA +GL++GE+GK +R+KM+ LK+AA
Sbjct: 390 KMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRV 449
Query: 239 LSPDGFSTKSLANVAQKWK 257
L DG STK+L+ VA KWK
Sbjct: 450 LKDDGTSTKALSLVALKWK 468
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 152/262 (58%), Gaps = 37/262 (14%)
Query: 2 DLEPGAFKALMKSRESSFRLPPVYPVGPLI-LTGS----INESDRTDCLKWLDDQPNGSV 56
DLE + AL E ++PP+Y VGPL+ L G ++++ LKWLD+QP+ SV
Sbjct: 222 DLEQSSIDALYDHDE---KIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSV 278
Query: 57 LFVCFGSGG-SLSQKQLNELALGLEMSGQRFLWVVKCPDEKATNATYFGVHGMKEENPFD 115
+F+CFGS G S Q+ E+ALGL+ SG RFLW +N+ E+ F
Sbjct: 279 VFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW---------SNSA--------EKKVF- 320
Query: 116 YLPKGFLD--RTKGVGLVVPSWAPQIQVLSHGSTGGFLSHCGWNSVLESIVHGVPIIAWP 173
P+GFL+ +G G++ WAPQ++VL+H + GGF+SHCGWNS+LES+ GVPI+ WP
Sbjct: 321 --PEGFLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP 377
Query: 174 LYAEQKMNAVLLTDDLKVAWRVKVNE---DGLVGREEVATYARGLIQGEDGKLLRDKMRV 230
+YAEQ++NA L + V ++V+ +V EE+ + L+ + ++ K++
Sbjct: 378 IYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKD--SIVHKKVQE 435
Query: 231 LKDAAANALSPDGFSTKSLANV 252
+K+ + NA+ G S S+ +
Sbjct: 436 MKEMSRNAVVDGGSSLISVGKL 457
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 152/262 (58%), Gaps = 37/262 (14%)
Query: 2 DLEPGAFKALMKSRESSFRLPPVYPVGPLI-LTGS----INESDRTDCLKWLDDQPNGSV 56
DLE + AL E ++PP+Y VGPL+ L G ++++ LKWLD+QP+ SV
Sbjct: 222 DLEQSSIDALYDHDE---KIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSV 278
Query: 57 LFVCFGSGG-SLSQKQLNELALGLEMSGQRFLWVVKCPDEKATNATYFGVHGMKEENPFD 115
+F+CFGS G S Q+ E+ALGL+ SG RFLW +N+ E+ F
Sbjct: 279 VFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW---------SNSA--------EKKVF- 320
Query: 116 YLPKGFLD--RTKGVGLVVPSWAPQIQVLSHGSTGGFLSHCGWNSVLESIVHGVPIIAWP 173
P+GFL+ +G G++ WAPQ++VL+H + GGF+SHCGWNS+LES+ GVPI+ WP
Sbjct: 321 --PEGFLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP 377
Query: 174 LYAEQKMNAVLLTDDLKVAWRVKVNE---DGLVGREEVATYARGLIQGEDGKLLRDKMRV 230
+YAEQ++NA L + V ++V+ +V EE+ + L+ + ++ K++
Sbjct: 378 IYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKD--SIVHKKVQE 435
Query: 231 LKDAAANALSPDGFSTKSLANV 252
+K+ + NA+ G S S+ +
Sbjct: 436 MKEMSRNAVVDGGSSLISVGKL 457
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 127/239 (53%), Gaps = 26/239 (10%)
Query: 17 SSFRLPPVYPVGPLILTGSINE-SDRTDCLKWLDDQPNGSVLFVCFGSGGSLSQKQLNEL 75
S F+L + VGP LT + SD CL+WLD N SV+++ FGS + +L L
Sbjct: 237 SKFKL--LLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTAL 294
Query: 76 ALGLEMSGQRFLWVVKCPDEKATNATYFGVHGMKEENPFDYLPKGFLDRTKGVGLVVPSW 135
A LE G F+W + +P + LPKGFL+RTK G +V +W
Sbjct: 295 AESLEECGFPFIWSFRG-------------------DPKEKLPKGFLERTKTKGKIV-AW 334
Query: 136 APQIQVLSHGSTGGFLSHCGWNSVLESIVHGVPIIAWPLYAEQKMNAVLLTDDLKVAWRV 195
APQ+++L H S G FL+H GWNSVLE IV GVP+I+ P + +Q +N +L L++ V
Sbjct: 335 APQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV 394
Query: 196 KVNEDGLVGREEVATYARGLIQGEDGKLLRDKMRVLKDAAANALSPDGFSTKSLANVAQ 254
++G++ +E + + E G ++R K+ LK++A A+ +G S + Q
Sbjct: 395 ---DNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQ 450
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 125/250 (50%), Gaps = 33/250 (13%)
Query: 18 SFRLPPVYPVGPL----ILTGSINESDR---------TDCLKWLDDQPNGSVLFVCFGSG 64
S +P +YP+GPL T I++ D T+CL WL+ + GSV++V FGS
Sbjct: 246 SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGST 305
Query: 65 GSLSQKQLNELALGLEMSGQRFLWVVKCPDEKATNATYFGVHGMKEENPFDYLPKGFLDR 124
++ +QL E A GL + FLW+++ PD + F F +
Sbjct: 306 TVMTPEQLLEFAWGLANCKKSFLWIIR-PDLVIGGSVIFSSE--------------FTNE 350
Query: 125 TKGVGLVVPSWAPQIQVLSHGSTGGFLSHCGWNSVLESIVHGVPIIAWPLYAEQKMNAVL 184
GL+ SW PQ +VL+H S GGFL+HCGWNS ESI GVP++ WP +A+Q +
Sbjct: 351 IADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRF 409
Query: 185 LTDDLKVAWRVKVNEDGLVGREEVATYARGLIQGEDGKLLRDKMRVLKDAAANALSPDGF 244
+ ++ W + + D V REE+A +I G+ GK ++ K LK A P G
Sbjct: 410 ICNE----WEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGC 465
Query: 245 STKSLANVAQ 254
S +L V +
Sbjct: 466 SYMNLNKVIK 475
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 136/237 (57%), Gaps = 27/237 (11%)
Query: 27 VGPL-ILTGSINESDRTDCLKWLDDQPNGSVLFVCFGSGGSLSQKQLNELALGLEMSGQR 85
+GP ++T + T CL+WL ++ SV+++ FG+ + ++ L+ LE S
Sbjct: 243 IGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVP 302
Query: 86 FLWVVKCPDEKATNATYFGVHGMKEENPFDYLPKGFLDRTKGVGLVVPSWAPQIQVLSHG 145
F+W ++ +KA VH LP+GFL++T+G G+VVP WAPQ +VL+H
Sbjct: 303 FIWSLR---DKAR------VH----------LPEGFLEKTRGYGMVVP-WAPQAEVLAHE 342
Query: 146 STGGFLSHCGWNSVLESIVHGVPIIAWPLYAEQKMNAVLLTDDLKVAWRVKVNEDGLVGR 205
+ G F++HCGWNS+ ES+ GVP+I P + +Q++N ++ D L++ R+ E G+ +
Sbjct: 343 AVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI---EGGVFTK 399
Query: 206 EEVATYARGLIQGEDGKLLRDKMRVLKDAAANALSPDGFSTK---SLANVAQKWKNL 259
+ + ++ E GK LR+ +R L++ A A+ P G ST+ +L ++ K K++
Sbjct: 400 SGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSKPKDV 456
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 28/129 (21%)
Query: 53 NGSVLFVCFGSGGSLSQKQLNELALGLEMSGQRFLWVVKCPDEKATNATYFGVHGMKEEN 112
NG V+F + ++++ N +A L Q+ LW
Sbjct: 21 NGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWR----------------------- 57
Query: 113 PFDYLPKGFLDRTKGVGLVVPSWAPQIQVLSHGSTGGFLSHCGWNSVLESIVHGVPIIAW 172
FD G T G+ + W PQ +L H T F++H G N + E+I HG+P +
Sbjct: 58 -FD----GNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGI 112
Query: 173 PLYAEQKMN 181
PL+A+Q N
Sbjct: 113 PLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 132 VPSWAPQIQVLSHGSTGGFLSHCGWNSVLESIVHGVPIIAWPLYAEQKMNA 182
V W PQ+ +L+ S F++H G S +E++ + VP++A P AEQ MNA
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA 357
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 132 VPSWAPQIQVLSHGSTGGFLSHCGWNSVLESIVHGVPIIAWPLYAEQKMNAVLLTDDLKV 191
V W PQ+ +L F++H G E + P+IA P +Q NA +L L V
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-QGLGV 343
Query: 192 AWRVKVNE 199
A ++ E
Sbjct: 344 ARKLATEE 351
>pdb|3B9J|B Chain B, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|J Chain J, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 350
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 130 LVVPSWAPQIQVLSHGSTG-GFLSHCGWNSVLESIVHGV 167
++ P+W P++ + HG G F + C +SV ++++ V
Sbjct: 59 IICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAV 97
>pdb|3NVV|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVW|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 334
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 130 LVVPSWAPQIQVLSHGSTG-GFLSHCGWNSVLESIVHGV 167
++ P+W P++ + HG G F + C +SV ++++ V
Sbjct: 84 IICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAV 122
>pdb|1FIQ|B Chain B, Crystal Structure Of Xanthine Oxidase From Bovine Milk
Length = 350
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 130 LVVPSWAPQIQVLSHGSTG-GFLSHCGWNSVLESIVHGV 167
++ P+W P++ + HG G F + C +SV ++++ V
Sbjct: 59 IICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAV 97
>pdb|3ETR|B Chain B, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|M Chain M, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3EUB|B Chain B, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|K Chain K, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|T Chain T, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|3 Chain 3, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3NRZ|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NS1|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVZ|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3SR6|B Chain B, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|K Chain K, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 305
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 130 LVVPSWAPQIQVLSHGSTG-GFLSHCGWNSVLESIVHGV 167
++ P+W P++ + HG G F + C +SV ++++ V
Sbjct: 55 IICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAV 93
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
Length = 1332
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 130 LVVPSWAPQIQVLSHGSTG-GFLSHCGWNSVLESIVHGV 167
++ P+W P++ + HG G F + C +SV ++++ V
Sbjct: 278 IICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAV 316
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
Length = 1331
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 130 LVVPSWAPQIQVLSHGSTG-GFLSHCGWNSVLESIVHGV 167
++ P+W P++ + HG G F + C +SV ++++ V
Sbjct: 277 IICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAV 315
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 130 LVVPSWAPQIQVLSHGSTG-GFLSHCGWNSVLESIVHGV 167
++ P+W P++ + HG G F + C +SV ++++ V
Sbjct: 278 IICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAV 316
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 135 WAPQIQVLSHGSTGGFLSHCGWNSVLESIVHGVPIIAWPLYAEQ 178
W P VL+H L+H +VLE+ GVP++ P +A +
Sbjct: 288 WIPFHSVLAHARAC--LTHGTTGAVLEAFAAGVPLVLVPHFATE 329
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 30 LILTGSINESDRTDCLKWLDDQPNGSVLFVCFGSGGSLSQK 70
L +G + + + KWL + P+ S++FV + + GSL ++
Sbjct: 504 LSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQAEGSLGRR 544
>pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
Topo Iv (Pare-Parc Fusion Truncate)
pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
Topo Iv (Pare-Parc Fusion Truncate)
Length = 767
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 176 AEQKMNAVLLTDDLKVAWRVKVNEDGLVGREEVATYARGLIQ 217
AE M+ + T DL+ ++RV +N G GR +V + R L++
Sbjct: 576 AEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLE 617
>pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
Iv (Pare-Parc Fusion Truncate)
Length = 767
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 176 AEQKMNAVLLTDDLKVAWRVKVNEDGLVGREEVATYARGLIQ 217
AE M+ + T DL+ ++RV +N G GR +V + R L++
Sbjct: 576 AEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLE 617
>pdb|2HKF|H Chain H, Crystal Structure Of The Complex Fab M75- Peptide
pdb|2HKH|H Chain H, Crystal Structure Of The Fab M75
Length = 218
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 51 QPNGSVLFVCFGSGGSLSQKQLNELALGLEMSGQRFLWVVKCPDEKATNATYFG 104
QP GS+ C SG +L+ +N + + G+ WV + + ATY+
Sbjct: 13 QPKGSLKLSCVVSGSTLNNYAMNWVR---QAPGKGLEWVARIRSKSNNYATYYA 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,329,542
Number of Sequences: 62578
Number of extensions: 346996
Number of successful extensions: 738
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 23
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)