Query 042250
Match_columns 186
No_of_seqs 115 out of 710
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:07:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 80.7 0.74 2.5E-05 29.2 1.7 12 118-129 38-49 (49)
2 3rk3_E Complexin-1; snare prot 77.9 1.1 3.6E-05 29.8 1.8 14 118-131 41-54 (63)
3 1l4a_E Synaphin A; snare, snar 75.5 1.3 4.4E-05 30.7 1.8 14 118-131 45-58 (79)
4 4egd_A Uncharacterized protein 11.3 89 0.003 26.0 1.4 13 120-132 194-206 (260)
5 3k6g_A Telomeric repeat-bindin 10.4 1.1E+02 0.0038 22.3 1.5 13 118-130 75-87 (111)
6 2oez_A UPF0289 protein VP2528; 10.4 77 0.0026 26.3 0.8 18 121-138 120-138 (247)
7 2ko5_A Ring finger protein Z; 8.4 2.6E+02 0.0088 20.0 2.8 19 18-36 80-98 (99)
8 1hyk_A Agouti related protein; 7.9 67 0.0023 20.0 -0.4 10 141-150 14-23 (46)
9 1yfb_A Transition state regula 7.7 1.9E+02 0.0066 18.3 1.7 14 119-132 26-39 (59)
10 1zbd_B Rabphilin-3A; G protein 7.5 1.5E+02 0.0052 21.9 1.3 16 144-159 99-114 (134)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=80.68 E-value=0.74 Score=29.24 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=10.6
Q ss_pred hHHHHHHHHhCC
Q 042250 118 FYRSKLRGQYFL 129 (186)
Q Consensus 118 ~~R~~iR~kygI 129 (186)
.+|+.||.||||
T Consensus 38 ~mRq~IRdKY~i 49 (49)
T 1kil_E 38 VMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC
Confidence 369999999998
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=77.87 E-value=1.1 Score=29.84 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.7
Q ss_pred hHHHHHHHHhCCCC
Q 042250 118 FYRSKLRGQYFLEE 131 (186)
Q Consensus 118 ~~R~~iR~kygI~G 131 (186)
.+|+.||.||||+-
T Consensus 41 ~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 41 AVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhccch
Confidence 36999999999974
No 3
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=75.53 E-value=1.3 Score=30.68 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=11.7
Q ss_pred hHHHHHHHHhCCCC
Q 042250 118 FYRSKLRGQYFLEE 131 (186)
Q Consensus 118 ~~R~~iR~kygI~G 131 (186)
.+|+.||.||||+-
T Consensus 45 ~mRq~IRdKY~ikK 58 (79)
T 1l4a_E 45 EMRQTIRDKYGLKK 58 (79)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhcccc
Confidence 36999999999984
No 4
>4egd_A Uncharacterized protein saouhsc_02783; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Staphylococcus aureus subsp} PDB: 4eg9_A
Probab=11.32 E-value=89 Score=26.01 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=11.0
Q ss_pred HHHHHHHhCCCCC
Q 042250 120 RSKLRGQYFLEES 132 (186)
Q Consensus 120 R~~iR~kygI~Gs 132 (186)
-+++|+||+|+-+
T Consensus 194 VKQLRkrY~IpT~ 206 (260)
T 4egd_A 194 VQQLRKRYDIPTK 206 (260)
T ss_dssp HHHHHHHSCCCCC
T ss_pred HHHHHHhcCCCCC
Confidence 5799999999854
No 5
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=10.44 E-value=1.1e+02 Score=22.30 Aligned_cols=13 Identities=15% Similarity=0.025 Sum_probs=10.8
Q ss_pred hHHHHHHHHhCCC
Q 042250 118 FYRSKLRGQYFLE 130 (186)
Q Consensus 118 ~~R~~iR~kygI~ 130 (186)
..|.++|+|||=+
T Consensus 75 ~~R~qL~~KfG~e 87 (111)
T 3k6g_A 75 DTREALVKKFGAQ 87 (111)
T ss_dssp HHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhhH
Confidence 4799999999943
No 6
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=10.35 E-value=77 Score=26.25 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=10.9
Q ss_pred HHHHHHhCCCCCCcc-chh
Q 042250 121 SKLRGQYFLEESPCT-DCC 138 (186)
Q Consensus 121 ~~iR~kygI~Gs~c~-Dc~ 138 (186)
..||.|.+|+|..|. |.=
T Consensus 120 ~~iRQR~~iPGG~C~FDLP 138 (247)
T 2oez_A 120 SSIRQRFNLPGGSCCFDLP 138 (247)
T ss_dssp HHHHHHHHC----CGGGCH
T ss_pred HHHHhhhcCCCccCCcCcH
Confidence 479999999988764 665
No 7
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=8.41 E-value=2.6e+02 Score=20.02 Aligned_cols=19 Identities=47% Similarity=0.859 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCCCCCcc
Q 042250 18 APTAPPCPQPPPWPPPPLA 36 (186)
Q Consensus 18 ~~~~p~~~~p~~~~~~~~~ 36 (186)
+++||..-.|....|+||.
T Consensus 80 ~PSAPP~~~~~~~~pppy~ 98 (99)
T 2ko5_A 80 APTAPPTGAADSIRPPPYS 98 (99)
T ss_dssp SCCCCCCSCCSCCSCCSSC
T ss_pred CCCCCCcccCCCCCCCCCC
Confidence 5777766666666666553
No 8
>1hyk_A Agouti related protein; cysteine rich, disulfide bond, ICK, inhibitor cystine knot, melanocortin antagonists, AGRP, endogenous antagonist; NMR {Synthetic} SCOP: g.3.5.1 PDB: 1mr0_A
Probab=7.93 E-value=67 Score=19.97 Aligned_cols=10 Identities=40% Similarity=1.437 Sum_probs=6.6
Q ss_pred hcCcchhhhH
Q 042250 141 CCCEECSLCQ 150 (186)
Q Consensus 141 ~cC~pCal~Q 150 (186)
-||-||+++|
T Consensus 14 ~CCdpCA~C~ 23 (46)
T 1hyk_A 14 PCCDPCATCY 23 (46)
T ss_dssp CBSSTTCEEE
T ss_pred CCcCccchhh
Confidence 4677777665
No 9
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=7.67 E-value=1.9e+02 Score=18.30 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=11.1
Q ss_pred HHHHHHHHhCCCCC
Q 042250 119 YRSKLRGQYFLEES 132 (186)
Q Consensus 119 ~R~~iR~kygI~Gs 132 (186)
+=+++|+++||+..
T Consensus 26 IPkeiR~~Lgi~~G 39 (59)
T 1yfb_A 26 IPIELRRTLGIAEK 39 (59)
T ss_dssp CCHHHHHHTTCCTT
T ss_pred eCHHHHHHcCCCCC
Confidence 34789999999854
No 10
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=7.53 E-value=1.5e+02 Score=21.94 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=13.4
Q ss_pred cchhhhHHHHHHHhcC
Q 042250 144 EECSLCQEYRELTHQG 159 (186)
Q Consensus 144 ~pCal~Q~~REl~~r~ 159 (186)
+-|.+||..|||+.+.
T Consensus 99 W~C~vC~k~rel~~kS 114 (134)
T 1zbd_B 99 WLCKICLEQREVWKRS 114 (134)
T ss_dssp EEEHHHHHHHHHHHHT
T ss_pred eechhhHHHHHHHHhh
Confidence 4589999999998765
Done!