Query 042250
Match_columns 186
No_of_seqs 115 out of 710
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 07:07:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042250.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042250hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mkya3 d.52.5.1 (A:359-439) P 10.5 73 0.0053 19.9 2.3 19 116-134 54-73 (81)
2 d1tjla2 g.39.1.13 (A:111-151) 8.4 68 0.005 17.6 1.3 17 143-159 22-38 (41)
3 d2p7vb1 a.4.13.2 (B:546-613) S 7.8 90 0.0065 18.9 1.8 16 117-132 8-23 (68)
4 d1mcvi_ g.3.2.1 (I:) Trypsin i 6.7 55 0.004 16.6 0.3 11 135-145 13-23 (28)
5 d2cb5a_ d.3.1.1 (A:) Bleomycin 6.4 1.5E+02 0.011 24.5 3.1 23 98-131 71-93 (453)
6 d1emxa_ g.3.6.2 (A:) Heteropda 6.4 81 0.0059 16.2 0.8 18 59-76 5-22 (30)
7 d1ku3a_ a.4.13.2 (A:) Sigma70 6.1 1.3E+02 0.0092 17.7 1.8 17 116-132 10-26 (61)
8 d2g3ra2 b.34.9.1 (A:1538-1603) 6.0 73 0.0053 19.3 0.6 16 114-129 50-65 (66)
9 d1nexa1 a.157.1.1 (A:116-185) 5.7 1.3E+02 0.0095 18.2 1.8 16 117-132 45-60 (70)
10 d2oeza1 e.68.1.1 (A:1-245) Unc 5.7 79 0.0058 23.9 0.8 17 121-137 118-135 (245)
No 1
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.46 E-value=73 Score=19.94 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=15.1
Q ss_pred hhhHHHHHHHH-hCCCCCCc
Q 042250 116 SCFYRSKLRGQ-YFLEESPC 134 (186)
Q Consensus 116 ~~~~R~~iR~k-ygI~Gs~c 134 (186)
.=.+..++|+. ||++|.+.
T Consensus 54 ~ryL~n~lR~~~f~~~G~Pi 73 (81)
T d1mkya3 54 KIFLRKLIRDYVFPFEGSPI 73 (81)
T ss_dssp HHHHHHHHHHHTCCCTTCCC
T ss_pred HHHHHHHHHHHhCCCCccCE
Confidence 34578999997 99999864
No 2
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=8.42 E-value=68 Score=17.59 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=11.9
Q ss_pred CcchhhhHHHHHHHhcC
Q 042250 143 CEECSLCQEYRELTHQG 159 (186)
Q Consensus 143 C~pCal~Q~~REl~~r~ 159 (186)
-.-|+-||+.+|-+.|.
T Consensus 22 a~~Cv~Cq~~~E~~~r~ 38 (41)
T d1tjla2 22 ADLCIDCKTLAEIREKQ 38 (41)
T ss_dssp CCSCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHh
Confidence 34578888888876553
No 3
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=7.81 E-value=90 Score=18.88 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=13.0
Q ss_pred hhHHHHHHHHhCCCCC
Q 042250 117 CFYRSKLRGQYFLEES 132 (186)
Q Consensus 117 ~~~R~~iR~kygI~Gs 132 (186)
-..|.-|+.+|||.+.
T Consensus 8 ~rE~~Ii~~rfGl~~~ 23 (68)
T d2p7vb1 8 AREAKVLRMRFGIDMN 23 (68)
T ss_dssp HHHHHHHHHHTTTTSS
T ss_pred HHHHHHHHHHcCCCCC
Confidence 3568889999999864
No 4
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=6.74 E-value=55 Score=16.57 Aligned_cols=11 Identities=36% Similarity=1.081 Sum_probs=9.0
Q ss_pred cchhhhhcCcc
Q 042250 135 TDCCIHCCCEE 145 (186)
Q Consensus 135 ~Dc~~~~cC~p 145 (186)
+||++.+-|.|
T Consensus 13 sdclagcvcgp 23 (28)
T d1mcvi_ 13 SDCLAGCVCGP 23 (28)
T ss_dssp GGSCTTCCBCT
T ss_pred ccccccceecC
Confidence 68888888876
No 5
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.43 E-value=1.5e+02 Score=24.47 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=18.1
Q ss_pred hhhHHHHHHHhhhccccchhhHHHHHHHHhCCCC
Q 042250 98 SGSLYAIILCLTGCSCLYSCFYRSKLRGQYFLEE 131 (186)
Q Consensus 98 ~~~l~~ll~~~~g~~~~~~~~~R~~iR~kygI~G 131 (186)
-||+|+.+. .+|.++.+|+|++.
T Consensus 71 rCW~Fa~LN-----------~lR~~~~k~~~~~~ 93 (453)
T d2cb5a_ 71 RSWIFSCLN-----------VMRLPFMKKLNIEE 93 (453)
T ss_dssp CHHHHHHHH-----------HHHHHHHHHTTCSC
T ss_pred ccHHHhChH-----------HHHHHHHHHcCCCC
Confidence 478887653 47999999999974
No 6
>d1emxa_ g.3.6.2 (A:) Heteropdatoxin 2, hptx2 {Giant crab spider (Heteropoda venatoria) [TaxId: 152925]}
Probab=6.37 E-value=81 Score=16.24 Aligned_cols=18 Identities=33% Similarity=0.809 Sum_probs=12.3
Q ss_pred CcccccCCcchhhhhcch
Q 042250 59 GLCDCCDDVSSCCLTCWC 76 (186)
Q Consensus 59 gLf~C~~D~~~C~~~~fC 76 (186)
+||+=|+.-..||.++-|
T Consensus 5 ~lfsgc~t~adcceg~vc 22 (30)
T d1emxa_ 5 KLFSGCDTNADCCEGYVC 22 (30)
T ss_dssp CTTCTTCSTTCCCTTBCC
T ss_pred cccccCCCCcchhhhhhh
Confidence 577766666778777655
No 7
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=6.10 E-value=1.3e+02 Score=17.65 Aligned_cols=17 Identities=18% Similarity=-0.166 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHhCCCCC
Q 042250 116 SCFYRSKLRGQYFLEES 132 (186)
Q Consensus 116 ~~~~R~~iR~kygI~Gs 132 (186)
.-..|.-|+.+|||.+.
T Consensus 10 ~~rer~Ii~~ryGl~~~ 26 (61)
T d1ku3a_ 10 SEREAMVLKMRKGLIDG 26 (61)
T ss_dssp CHHHHHHHHHHHTTTTS
T ss_pred CHHHHHHHHHHhCCCCC
Confidence 34578899999999754
No 8
>d2g3ra2 b.34.9.1 (A:1538-1603) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.01 E-value=73 Score=19.27 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=13.1
Q ss_pred cchhhHHHHHHHHhCC
Q 042250 114 LYSCFYRSKLRGQYFL 129 (186)
Q Consensus 114 ~~~~~~R~~iR~kygI 129 (186)
+++.-+-.++|++||+
T Consensus 50 ilsleqgnrlreqygl 65 (66)
T d2g3ra2 50 ILSLEQGNRLREQYGL 65 (66)
T ss_dssp EBCHHHHHTTHHHHBC
T ss_pred eEEhhhhhhHHHhhCC
Confidence 4567788999999986
No 9
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.74 E-value=1.3e+02 Score=18.15 Aligned_cols=16 Identities=6% Similarity=0.090 Sum_probs=12.7
Q ss_pred hhHHHHHHHHhCCCCC
Q 042250 117 CFYRSKLRGQYFLEES 132 (186)
Q Consensus 117 ~~~R~~iR~kygI~Gs 132 (186)
...-.+||+.+||+..
T Consensus 45 gkt~eeiR~~f~I~~D 60 (70)
T d1nexa1 45 GRSPEEIRRTFNIVND 60 (70)
T ss_dssp TCCHHHHHHHHTCCCC
T ss_pred cCCHHHHHHHhCCCCC
Confidence 3457799999999964
No 10
>d2oeza1 e.68.1.1 (A:1-245) Uncharacterized protein VP2528 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=5.70 E-value=79 Score=23.91 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=10.2
Q ss_pred HHHHHHhCCCCCCcc-ch
Q 042250 121 SKLRGQYFLEESPCT-DC 137 (186)
Q Consensus 121 ~~iR~kygI~Gs~c~-Dc 137 (186)
..||+|.+|+|..|. |.
T Consensus 118 ~~irqR~~iPGG~c~FDL 135 (245)
T d2oeza1 118 SSIRQRFNLPGGSCCFDL 135 (245)
T ss_dssp HHHHHHHHC----CGGGC
T ss_pred HHHHHHcCCCCCCcCCCC
Confidence 478999999998764 54
Done!