BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042252
         (67 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AMH|A Chain A, Crystal Structure Of Maf-Like Protein Tbru21784aaa From
           T.Brucei
          Length = 207

 Score = 38.1 bits (87), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 3   YFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLI 61
           +F    D++++  +E G   N AGGL++E       V  +VG +  V G+  A+ EKL+
Sbjct: 146 FFSKFGDDIVERTLERGACMNSAGGLVVEDEDMSRHVVRIVGTSYGVRGMEPAVVEKLL 204


>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE
           FROM Mycobacterium Abscessus Atcc 19977  DSM 44196
 pdb|3RSI|B Chain B, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE
           FROM Mycobacterium Abscessus Atcc 19977  DSM 44196
 pdb|3RSI|C Chain C, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE
           FROM Mycobacterium Abscessus Atcc 19977  DSM 44196
          Length = 265

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 24  VAGGLMLEHPLTLPFVEAVVGA 45
           +  GL+L H LT P + AV GA
Sbjct: 91  IGKGLLLSHTLTKPLIAAVNGA 112


>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
           Corynebacterium Glutamicum With Camp
 pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
           Corynebacterium Glutamicum With Camp
 pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
           Corynebacterium Glutamicum With Camp
 pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
           Corynebacterium Glutamicum With Camp
 pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
           Corynebacterium Glutamicum With Camp
 pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
           Corynebacterium Glutamicum With Camp
          Length = 247

 Score = 25.8 bits (55), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 4   FHDIPDEVIDNLIEEGITFNV--AGGLMLEHPLTLPFVEAVVGAT 46
           F D+P  V   L++    F    AG L + H LT   +  +VGA+
Sbjct: 166 FTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGAS 210


>pdb|1UKC|A Chain A, Crystal Structure Of Aspergillus Niger Esta
 pdb|1UKC|B Chain B, Crystal Structure Of Aspergillus Niger Esta
          Length = 522

 Score = 25.4 bits (54), Expect = 7.7,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 14  NLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALT 57
           N+I+E    N+AGG+ + H   LP +    G+T T+   S  LT
Sbjct: 409 NIIDES---NIAGGIGVPHTFELPAIFG-AGSTGTLSSDSSYLT 448


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,989,197
Number of Sequences: 62578
Number of extensions: 59666
Number of successful extensions: 170
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 4
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)