BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042252
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54TC5|MAFL2_DICDI Maf-like protein DDB_G0281937 OS=Dictyostelium discoideum
GN=DDB_G0281937 PE=3 SV=1
Length = 197
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 3 YFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIW 62
+F I DE ID LI++G + AGG +EH F + G +T++GL K LT+ LI
Sbjct: 136 HFKKISDEFIDKLIKQGDVMHCAGGFTVEH--MADFTLQLEGEVETILGLPKTLTKNLIS 193
Query: 63 EAQQ 66
+ Q
Sbjct: 194 QVSQ 197
>sp|P58632|Y3075_NOSS1 Maf-like protein all3075 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=all3075 PE=3 SV=1
Length = 197
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 2 VYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLI 61
VYF +I D I + G AG LE +L F+E + G V+GLS L +++
Sbjct: 127 VYFANISDRTIQAYVATGEPLKCAGAFALEGFGSL-FIEKIAGCHSNVIGLSLPLLRQML 185
Query: 62 WE 63
E
Sbjct: 186 EE 187
>sp|Q3MEX6|Y836_ANAVT Maf-like protein Ava_0836 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=Ava_0836 PE=3 SV=1
Length = 197
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 2 VYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLI 61
VYF +I D I + G AG LE +L F+E + G V+GLS L +++
Sbjct: 127 VYFANISDRTIQAYVATGEPLKCAGAFALEGFGSL-FIEKIAGCHSNVIGLSLPLLRQML 185
Query: 62 WE 63
E
Sbjct: 186 EE 187
>sp|Q2JXB4|Y360_SYNJA Maf-like protein CYA_0360 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=CYA_0360 PE=3 SV=1
Length = 197
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 2 VYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLI 61
V+F DE I + G N AG ++ +L FVE + G V+GLS L ++I
Sbjct: 127 VFFAKPSDEEIRTYVATGEPLNCAGCFAIDGRGSL-FVERIEGCPGNVIGLSLPLLRRMI 185
Query: 62 WE 63
E
Sbjct: 186 QE 187
>sp|Q6AGN3|Y475_LEIXX Maf-like protein Lxx04750 OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=Lxx04750 PE=3 SV=1
Length = 215
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 4 FHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLI 61
F D+ D ID I G VAG ++ L PF+ V G TV+GLS + L+
Sbjct: 141 FADVTDAEIDAYIASGEPLEVAGAFTID-SLGGPFIRRVEGDPSTVVGLSLSTLRDLV 197
>sp|B7KJY0|Y1128_CYAP7 Maf-like protein PCC7424_1128 OS=Cyanothece sp. (strain PCC 7424)
GN=PCC7424_1128 PE=3 SV=1
Length = 196
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 2 VYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLI 61
VYF D+ D I + G AG LE L FVE + G V+GLS L +++
Sbjct: 126 VYFADVSDAEIKAYVASGEPLKCAGCFALEGKGGL-FVEKLEGCHSNVIGLSLPLLREML 184
Query: 62 WE 63
E
Sbjct: 185 NE 186
>sp|Q2JNH4|Y709_SYNJB Maf-like protein CYB_0709 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=CYB_0709 PE=3 SV=1
Length = 197
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 2 VYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLI 61
V+F DE I + G N AG ++ +L FVE + G V+GLS L +++
Sbjct: 127 VFFAKPSDEEIRAYVATGEPLNCAGCFAIDGRGSL-FVERIEGCPGNVIGLSLPLLRRMM 185
Query: 62 WE 63
E
Sbjct: 186 QE 187
>sp|A4FNQ1|Y6507_SACEN Maf-like protein SACE_6507 OS=Saccharopolyspora erythraea (strain
NRRL 23338) GN=SACE_6507 PE=3 SV=1
Length = 211
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 2 VYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLI 61
V F + + +D I G +VAGG LE F+E V G +V+G+S LT KL+
Sbjct: 136 VRFSEPTEAELDAYIATGEPLHVAGGFTLEG-FGGWFIEGVDGDPSSVLGISLPLTRKLL 194
Query: 62 WE 63
E
Sbjct: 195 AE 196
>sp|B8HN65|Y4892_CYAP4 Maf-like protein Cyan7425_4892 OS=Cyanothece sp. (strain PCC 7425 /
ATCC 29141) GN=Cyan7425_4892 PE=3 SV=1
Length = 195
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 2 VYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLI 61
V F I D I + G N AG L+ L FV+ +VG V+GLS L K++
Sbjct: 126 VDFAWISDRQIAAYVATGEPLNCAGAFALDGRGGL-FVDRIVGCPSNVIGLSLPLLRKML 184
>sp|Q7V0U3|Y1159_PROMP Maf-like protein PMM1159 OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=PMM1159 PE=3 SV=1
Length = 208
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 2 VYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLS 53
VYF + DE I N ++ AGG LE ++E + G VMGLS
Sbjct: 143 VYFSKLQDEEIKNYVDSLEPLYCAGGFALEGK-GGKYIERIDGCFSNVMGLS 193
>sp|Q82I23|Y3335_STRAW Maf-like protein SAV_3335 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=SAV_3335 PE=3 SV=1
Length = 206
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKL 60
+V F + DE I + G +VAG L+ + PF+E + G V+G+S +L
Sbjct: 131 VVRFGEPTDEEIAAYVASGEPLHVAGAFTLDGR-SAPFIEGIDGDHGNVIGISLPTVRRL 189
Query: 61 IWE 63
+ E
Sbjct: 190 LGE 192
>sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious bronchitis virus
(strain Beaudette CK) GN=1a PE=3 SV=1
Length = 3951
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 7 IPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEAQQ 66
+P +V+D L + G + L + PL F E V +T G SK +TE+++ E Q+
Sbjct: 876 LPQKVVDVLGDWGEAVDAQEQLCQQEPLQHTFEEPVENST----GSSKTMTEQVVVEDQE 931
>sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious bronchitis virus
(strain Beaudette) GN=1a PE=1 SV=1
Length = 3951
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 7 IPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEAQQ 66
+P +V+D L + G + L + PL F E V +T G SK +TE+++ E Q+
Sbjct: 876 LPQKVVDVLGDWGEAVDAQEQLCQQEPLQHTFEEPVENST----GSSKTMTEQVVVEDQE 931
>sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious bronchitis virus
(strain Beaudette CK) GN=rep PE=3 SV=1
Length = 6629
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 7 IPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEAQQ 66
+P +V+D L + G + L + PL F E V +T G SK +TE+++ E Q+
Sbjct: 876 LPQKVVDVLGDWGEAVDAQEQLCQQEPLQHTFEEPVENST----GSSKTMTEQVVVEDQE 931
>sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious bronchitis virus
(strain Beaudette) GN=rep PE=1 SV=1
Length = 6629
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 7 IPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEAQQ 66
+P +V+D L + G + L + PL F E V +T G SK +TE+++ E Q+
Sbjct: 876 LPQKVVDVLGDWGEAVDAQEQLCQQEPLQHTFEEPVENST----GSSKTMTEQVVVEDQE 931
>sp|Q5PQK1|SEP10_RAT Septin-10 OS=Rattus norvegicus GN=Sept10 PE=1 SV=1
Length = 456
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 2 VYFHDIPDEVIDNLIEEGITFNV 24
V F +PD+++D IE+G FN+
Sbjct: 24 VGFESLPDQLVDRSIEQGFCFNI 46
>sp|Q8C650|SEP10_MOUSE Septin-10 OS=Mus musculus GN=Sept10 PE=2 SV=1
Length = 452
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 2 VYFHDIPDEVIDNLIEEGITFNV 24
V F +PD+++D IE+G FN+
Sbjct: 20 VGFESLPDQLVDRSIEQGFCFNI 42
>sp|P85959|UP03_PSEMZ Unknown protein 3 (Fragment) OS=Pseudotsuga menziesii PE=1 SV=1
Length = 24
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 32 HPLTLPFVEAVVGATDTVMGLSK 54
HP LPF++ ++G D+V GL +
Sbjct: 2 HPSVLPFIKQLIGTMDSVRGLPR 24
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,261,416
Number of Sequences: 539616
Number of extensions: 793788
Number of successful extensions: 2245
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2241
Number of HSP's gapped (non-prelim): 21
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)