Query 042252
Match_columns 67
No_of_seqs 112 out of 1030
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14364 Maf-like protein; Pro 99.9 2.7E-28 6E-33 162.8 5.3 64 1-65 117-180 (181)
2 PRK04694 Maf-like protein; Rev 99.9 2.6E-28 5.6E-33 164.0 5.0 63 1-64 125-187 (190)
3 PRK14366 Maf-like protein; Pro 99.9 5.9E-28 1.3E-32 163.0 5.3 64 1-65 127-190 (195)
4 PRK00078 Maf-like protein; Rev 99.9 4E-28 8.8E-33 163.1 4.5 63 1-64 126-188 (192)
5 PRK00032 Maf-like protein; Rev 99.9 5.2E-28 1.1E-32 162.6 5.0 63 1-64 123-185 (190)
6 PRK14361 Maf-like protein; Pro 99.9 6.3E-28 1.4E-32 161.8 5.4 63 1-64 118-180 (187)
7 PRK14362 Maf-like protein; Pro 99.9 5.6E-28 1.2E-32 164.3 5.0 63 1-64 134-196 (207)
8 PRK14367 Maf-like protein; Pro 99.9 6E-28 1.3E-32 163.5 4.9 63 1-64 129-191 (202)
9 PRK14368 Maf-like protein; Pro 99.9 9E-28 2E-32 161.8 5.2 63 1-64 127-189 (193)
10 PRK02141 Maf-like protein; Rev 99.9 8.1E-28 1.8E-32 163.5 4.9 63 1-64 134-197 (207)
11 PRK00648 Maf-like protein; Rev 99.9 1.2E-27 2.6E-32 160.8 5.3 63 1-64 125-187 (191)
12 PRK01526 Maf-like protein; Rev 99.9 1.2E-27 2.5E-32 162.5 5.1 63 1-64 134-196 (205)
13 PRK04056 Maf-like protein; Rev 99.9 9.1E-28 2E-32 160.3 4.5 60 1-61 121-180 (180)
14 PRK01441 Maf-like protein; Rev 99.9 1.6E-27 3.5E-32 161.8 5.3 62 1-63 133-194 (207)
15 PRK00884 Maf-like protein; Rev 99.9 1.7E-27 3.6E-32 160.6 5.2 63 1-64 124-187 (194)
16 COG0424 Maf Nucleotide-binding 99.9 1.9E-27 4.2E-32 160.9 5.2 62 1-63 125-186 (193)
17 TIGR00172 maf MAF protein. Thi 99.9 1.4E-27 3.1E-32 159.6 4.3 61 1-62 123-183 (183)
18 PRK00148 Maf-like protein; Rev 99.9 2.4E-27 5.2E-32 159.7 5.2 63 1-64 123-185 (194)
19 PRK01839 Maf-like protein; Rev 99.9 2.5E-27 5.5E-32 161.1 4.8 63 1-64 143-205 (209)
20 PRK00234 Maf-like protein; Rev 99.9 5.3E-27 1.1E-31 157.7 5.4 63 1-64 124-187 (192)
21 PRK14363 Maf-like protein; Pro 99.9 4.7E-27 1E-31 159.6 5.1 62 1-63 121-182 (204)
22 PRK14365 Maf-like protein; Pro 99.9 6.6E-27 1.4E-31 157.9 5.3 63 1-64 125-187 (197)
23 PF02545 Maf: Maf-like protein 99.9 1.8E-27 3.8E-32 160.2 1.9 62 1-63 126-187 (195)
24 PRK02478 Maf-like protein; Rev 99.9 1E-26 2.2E-31 157.1 5.2 63 1-64 130-194 (199)
25 cd00555 Maf Nucleotide binding 99.9 1.3E-26 2.9E-31 154.3 4.1 60 1-61 121-180 (180)
26 PRK04425 Maf-like protein; Rev 99.9 6.5E-26 1.4E-30 153.1 5.1 63 1-64 127-191 (196)
27 KOG1509 Predicted nucleic acid 99.9 3E-25 6.4E-30 151.0 5.4 65 1-66 143-207 (209)
28 COG4285 Uncharacterized conser 75.6 2.4 5.2E-05 30.2 2.1 43 4-51 67-111 (253)
29 smart00417 H4 Histone H4. 72.6 2.9 6.3E-05 24.5 1.7 17 47-63 9-25 (74)
30 COG1492 CobQ Cobyric acid synt 71.7 3.2 6.8E-05 32.1 2.1 48 9-57 315-363 (486)
31 PF10288 DUF2392: Protein of u 56.5 2.5 5.4E-05 25.7 -0.8 46 4-50 38-97 (107)
32 PF12812 PDZ_1: PDZ-like domai 54.9 35 0.00075 19.7 4.0 45 3-47 14-62 (78)
33 PF10309 DUF2414: Protein of u 51.6 31 0.00066 19.5 3.3 42 2-54 8-52 (62)
34 cd00076 H4 Histone H4, one of 47.7 14 0.0003 22.1 1.6 17 47-63 9-25 (85)
35 PLN00035 histone H4; Provision 46.8 15 0.00032 22.9 1.6 18 46-63 24-41 (103)
36 PF10941 DUF2620: Protein of u 46.7 17 0.00036 23.2 1.9 24 6-32 81-104 (117)
37 PF10281 Ish1: Putative stress 42.2 24 0.00052 17.5 1.7 16 4-19 1-16 (38)
38 PF07685 GATase_3: CobB/CobQ-l 37.4 24 0.00052 22.4 1.6 37 9-48 32-69 (158)
39 PF09825 BPL_N: Biotin-protein 37.0 25 0.00054 26.2 1.8 20 10-29 73-94 (367)
40 KOG1496 Malate dehydrogenase [ 36.0 19 0.00042 26.3 1.1 37 23-59 272-309 (332)
41 PF03540 TFIID_30kDa: Transcri 35.9 35 0.00076 18.7 1.8 13 7-19 3-15 (51)
42 PF07637 PSD5: Protein of unkn 34.2 36 0.00079 18.8 1.8 13 5-17 17-29 (64)
43 PF04369 Lactococcin: Lactococ 32.3 28 0.00061 19.8 1.1 17 1-17 4-20 (60)
44 PTZ00015 histone H4; Provision 32.2 40 0.00086 20.9 1.9 18 46-63 25-42 (102)
45 cd03144 GATase1_ScBLP_like Typ 30.7 31 0.00068 21.5 1.3 22 9-30 67-90 (114)
46 PF13262 DUF4054: Protein of u 30.3 44 0.00095 20.0 1.8 18 3-20 7-24 (106)
47 PF03752 ALF: Short repeats of 29.3 47 0.001 17.0 1.6 13 7-19 26-38 (43)
48 PRK06764 hypothetical protein; 28.0 23 0.00049 21.9 0.3 21 28-48 76-96 (105)
49 smart00271 DnaJ DnaJ molecular 27.7 13 0.00028 19.3 -0.8 17 45-61 2-18 (60)
50 PF13342 Toprim_Crpt: C-termin 27.7 63 0.0014 18.0 2.1 16 5-20 14-29 (62)
51 PRK12866 YciI-like protein; Re 27.2 84 0.0018 18.7 2.7 26 3-29 53-78 (97)
52 KOG0089 Methylenetetrahydrofol 26.9 34 0.00074 25.1 1.1 15 45-59 173-187 (309)
53 cd06257 DnaJ DnaJ domain or J- 26.6 15 0.00033 18.6 -0.6 17 45-61 1-17 (55)
54 PHA02782 hypothetical protein; 26.2 1.1E+02 0.0023 24.0 3.6 51 2-55 361-411 (503)
55 PTZ00246 proteasome subunit al 26.1 56 0.0012 22.3 2.0 15 4-18 226-240 (253)
56 PF12646 DUF3783: Domain of un 24.7 98 0.0021 16.7 2.5 17 2-18 4-20 (58)
57 PRK10598 lipoprotein; Provisio 24.6 46 0.00099 22.6 1.3 20 5-24 25-44 (186)
58 PF11609 DUF3248: Protein of u 24.5 64 0.0014 18.4 1.7 17 4-20 40-56 (63)
59 PF08708 PriCT_1: Primase C te 23.5 75 0.0016 17.3 1.9 13 6-18 52-64 (71)
60 PF14237 DUF4339: Domain of un 23.0 1.2E+02 0.0025 15.3 2.4 19 3-21 10-28 (45)
61 TIGR03544 DivI1A_domain DivIVA 22.6 85 0.0018 15.2 1.8 15 4-18 15-29 (34)
62 TIGR03690 20S_bact_beta protea 21.4 77 0.0017 21.2 1.9 16 3-18 198-213 (219)
63 PRK12864 YciI-like protein; Re 20.9 1.2E+02 0.0026 17.6 2.5 24 4-28 54-77 (89)
64 cd00179 SynN Syntaxin N-termin 20.8 89 0.0019 19.1 2.0 15 6-20 129-143 (151)
65 PF13154 DUF3991: Protein of u 20.5 93 0.002 17.5 1.9 17 5-21 7-23 (77)
66 PF09339 HTH_IclR: IclR helix- 20.4 1.2E+02 0.0026 15.5 2.2 21 46-66 24-44 (52)
67 PF15581 Imm35: Immunity prote 20.2 1.1E+02 0.0024 18.8 2.2 17 50-66 44-60 (93)
68 PF15636 Tox-GHH: GHH signatur 20.1 1.1E+02 0.0024 17.8 2.2 18 5-22 35-52 (79)
No 1
>PRK14364 Maf-like protein; Provisional
Probab=99.95 E-value=2.7e-28 Score=162.83 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=61.3
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHHh
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEAQ 65 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~~ 65 (67)
+|+|+++|+++|++|+++++|+||||||+||| .|+.||++|+|||+||||||+..|.++|++..
T Consensus 117 ~V~f~~ls~~~I~~Yv~~~e~~dkAG~y~Iqg-~g~~li~~I~Gdy~nVvGLPl~~l~~~L~~~~ 180 (181)
T PRK14364 117 QVEFASLTTQDMEDYWATGEPVGKAGAYAIQG-IASQYIPKIQGSYSNVVGLPLYEFSQLFKRVK 180 (181)
T ss_pred EEEECCCCHHHHHHHHhcCCCcCcccCEEeec-CceeeEEEeEcCCcceeCCCHHHHHHHHHhhc
Confidence 48999999999999999999999999999999 79999999999999999999999999998763
No 2
>PRK04694 Maf-like protein; Reviewed
Probab=99.95 E-value=2.6e-28 Score=163.96 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=60.6
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++||++++|+||||||+||| .|+.||++|+|||+||||||+..|+++|++.
T Consensus 125 ~V~F~~ls~~~I~~Yv~~~ep~dkAG~y~Iqg-~g~~li~~I~Gdy~nV~GLPl~~l~~~L~~~ 187 (190)
T PRK04694 125 EVTFDLLDDAQIAAYAASGEPMGKAGAYAIQG-RAERFIRHLSGSYSGVMGLPLYQTSQLLTAF 187 (190)
T ss_pred EEEECCCCHHHHHHHHcCCCccceeeeehhcC-ChhhcEeeeECCCCcccCcCHHHHHHHHHhc
Confidence 48999999999999999999999999999999 7999999999999999999999999999864
No 3
>PRK14366 Maf-like protein; Provisional
Probab=99.94 E-value=5.9e-28 Score=163.04 Aligned_cols=64 Identities=25% Similarity=0.286 Sum_probs=61.2
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHHh
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEAQ 65 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~~ 65 (67)
+|+|+++||++|++||++|+|+||||||+||| .|+.||++|+|||+||||||+..+.++|++..
T Consensus 127 ~V~F~~ls~~~I~~Yv~~~ep~dkAGay~Iqg-~g~~li~~I~Gdy~nVvGLPl~~~~~~L~~~~ 190 (195)
T PRK14366 127 VVKFKRLSKQEIKYYIASGEWKGKAGGCNIQG-LAGKFVLSINGSYSSIIGLPLHETYCLLSGYF 190 (195)
T ss_pred EEEECCCCHHHHHHHHhcCCccceeeeEeecC-ChhhcEeeeECCCCcccCcCHHHHHHHHHHHh
Confidence 48999999999999999999999999999999 89999999999999999999999999998753
No 4
>PRK00078 Maf-like protein; Reviewed
Probab=99.94 E-value=4e-28 Score=163.11 Aligned_cols=63 Identities=27% Similarity=0.324 Sum_probs=60.5
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++|+++++|+||||||+||| .|+.||++|+|||+||||||+..|.++|++.
T Consensus 126 ~V~f~~ls~~~I~~Yi~~~ep~dkAG~y~Iqg-~g~~li~~I~G~y~nV~GLPl~~l~~~L~~~ 188 (192)
T PRK00078 126 EVKFSKLTDRQIRKYINTGEPMDKAGAYGIQG-KGGVFVEEINGCYYNVVGLPLNKLYKMLEEM 188 (192)
T ss_pred EEEECCCCHHHHHHHHcCCCcccEeeEEEEcC-ChhhcEeecCCCCCcCCCcCHHHHHHHHHHc
Confidence 48999999999999999999999999999999 7999999999999999999999999999864
No 5
>PRK00032 Maf-like protein; Reviewed
Probab=99.94 E-value=5.2e-28 Score=162.60 Aligned_cols=63 Identities=27% Similarity=0.341 Sum_probs=60.6
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++|+++++|+||||||+||| .|..||++|+|||+||||||+..|.++|++.
T Consensus 123 ~V~F~~l~~~~I~~Yv~~~ep~dkAG~y~Iqg-~g~~li~~I~G~~~nVvGLPl~~l~~~L~~~ 185 (190)
T PRK00032 123 DVTFRTLSDEEIARYWASGEPLDKAGAYGIQG-LGGCFVRKINGSYHAVVGLPLVETAELLSNF 185 (190)
T ss_pred EEEECcCCHHHHHHHHhcCCccceeeeEEecc-ChhhcEeeeECCCCcccCCCHHHHHHHHHHc
Confidence 48999999999999999999999999999999 8999999999999999999999999999874
No 6
>PRK14361 Maf-like protein; Provisional
Probab=99.94 E-value=6.3e-28 Score=161.84 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=60.4
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++|+++++|+||||||+||| .|+.||++|+|||+||||||+..+.++|++.
T Consensus 118 ~V~f~~ls~~~I~~Yv~~~e~~dkAG~y~Iqg-~g~~~i~~I~G~y~nV~GLPl~~l~~~L~~~ 180 (187)
T PRK14361 118 DVTFRALTAAEISFYARSGEGLDKAGGYGIQG-VGMALVSRVEGDYSNVVGFPLSLVIRLLRGA 180 (187)
T ss_pred EEEECCCCHHHHHHHHhCCCCccceeEEEecc-CccceEEEeECCCCceeCCCHHHHHHHHHHc
Confidence 48999999999999999999999999999999 7899999999999999999999999999864
No 7
>PRK14362 Maf-like protein; Provisional
Probab=99.94 E-value=5.6e-28 Score=164.33 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=60.4
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++|+++++|+||||||+||| .|+.||++|+|||+||||||+..|.++|++.
T Consensus 134 ~V~F~~ls~~~I~~Yv~~~ep~dkAG~Y~IQg-~g~~li~~I~G~y~nVvGLPl~~l~~~L~~~ 196 (207)
T PRK14362 134 RVTMWDWPEAALAAYVATGEPSDKAGAYGIQG-IGAFLVRSIEGSWSNVVGLPVAELTALLLRR 196 (207)
T ss_pred EEEECCCCHHHHHHHHhcCCccceeeeEeecC-ChhhcEeeeECCCCcccCCCHHHHHHHHHHC
Confidence 48999999999999999999999999999999 7999999999999999999999999999864
No 8
>PRK14367 Maf-like protein; Provisional
Probab=99.94 E-value=6e-28 Score=163.52 Aligned_cols=63 Identities=21% Similarity=0.370 Sum_probs=60.5
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++|+++++|+||||||+||| .|+.||++|+|||+||||||+..+.++|++.
T Consensus 129 ~V~f~~ls~~~I~~Yv~~~e~~dkAGay~Iqg-~g~~~v~~I~G~y~nVvGLPl~~l~~~L~~~ 191 (202)
T PRK14367 129 RVVFKPLSSEEISAYVQSGEPMDKAGAYAVQG-IGGIFIQSIEGSFSGIMGLPVYETVSMLQDL 191 (202)
T ss_pred EEEECCCCHHHHHHHHhcCCccceeeeEeecC-ChhhcEeeeECCCccccCCCHHHHHHHHHHc
Confidence 48999999999999999999999999999999 7999999999999999999999999999864
No 9
>PRK14368 Maf-like protein; Provisional
Probab=99.94 E-value=9e-28 Score=161.83 Aligned_cols=63 Identities=22% Similarity=0.356 Sum_probs=60.5
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++|+++++|+||||||+||| .|..||++|+|||+||||||+..|.++|++.
T Consensus 127 ~V~f~~l~~~~I~~Yl~~~ep~dkAGay~Iqg-~g~~li~~I~Gdy~nV~GLPl~~l~~~L~~~ 189 (193)
T PRK14368 127 KVFFKPLRDEEIRDYIATGCPMDKAGAYAIQG-GAAHMVRKIDGSYTNVVGLPLCEVVEALRTI 189 (193)
T ss_pred EEEECCCCHHHHHHHHhcCCcccEeeeehhcC-ChhhcEeeeECCCCcccCcCHHHHHHHHHHc
Confidence 48999999999999999999999999999999 7899999999999999999999999999874
No 10
>PRK02141 Maf-like protein; Reviewed
Probab=99.94 E-value=8.1e-28 Score=163.53 Aligned_cols=63 Identities=21% Similarity=0.392 Sum_probs=60.3
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeec-ccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVG-ATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G-~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++||++++|+||||||+||| .|+.||++|+| ||+||||||+..|.++|++.
T Consensus 134 ~V~F~~ls~~~I~~Yv~~~ep~dkAGaY~IQg-~g~~li~~I~Gd~y~nVvGLPl~~l~~~L~~~ 197 (207)
T PRK02141 134 RVRFRTLTDAELDAYLRAETPYDVAGSAKSEG-LGIALLDAIDSDDPTALVGLPLIALTRMLRAA 197 (207)
T ss_pred EEEECCCCHHHHHHHHccCCCCceeeeeeccC-ChhheEEEEEECCCCcCCCcCHHHHHHHHHHc
Confidence 48999999999999999999999999999999 79999999999 89999999999999999864
No 11
>PRK00648 Maf-like protein; Reviewed
Probab=99.94 E-value=1.2e-27 Score=160.75 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=60.5
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++|+++++|+||||||+||| .++.||++|+|||+||||||+..|.++|++.
T Consensus 125 ~V~f~~ls~~~I~~Yv~~~ep~dkAG~y~Iqg-~g~~~i~~I~Gd~~nV~GLPl~~l~~~L~~~ 187 (191)
T PRK00648 125 QVTFRELSDEEIEYYIDTYKPLDKAGAYGIQE-WGGLIVKKIEGSYYNVMGLPIQTLYEELKEL 187 (191)
T ss_pred EEEECCCCHHHHHHHHcCCCccceeeeehhcC-ChhheEEeeECCCCccCCCCHHHHHHHHHHc
Confidence 48999999999999999999999999999999 7889999999999999999999999999874
No 12
>PRK01526 Maf-like protein; Reviewed
Probab=99.94 E-value=1.2e-27 Score=162.51 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=60.5
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++|+++++|+||||||+||| .|+.||++|+|||+||||||+..+.++|++.
T Consensus 134 ~V~f~~ls~~~I~~Yv~~~e~~dkAGaY~Iqg-~g~~li~~I~Gd~~nV~GLPl~~l~~~L~~~ 196 (205)
T PRK01526 134 IVKFKKLSDEEINFYCSLDEGIDKAGGCKISG-YAEAFISFISGSYSNVMGLPLFETVNALTSL 196 (205)
T ss_pred EEEECCCCHHHHHHHHhcCCCcCEeeeehhcC-ChhhcEeeeECCCCcccCcCHHHHHHHHHHc
Confidence 48999999999999999999999999999999 7999999999999999999999999999873
No 13
>PRK04056 Maf-like protein; Reviewed
Probab=99.94 E-value=9.1e-28 Score=160.32 Aligned_cols=60 Identities=22% Similarity=0.420 Sum_probs=57.5
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLI 61 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL 61 (67)
+|+|+++|+++|++|+++++|+||||||+||| .|+.||++|+|||+||||||+..|.++|
T Consensus 121 ~V~f~~ls~~~I~~Yv~~~e~~dkAG~y~Iqg-~g~~li~~I~G~y~nVvGLPl~~l~~~L 180 (180)
T PRK04056 121 TYRFKKFDEDDLEKYLESGLWQGKAGACMVEG-FHKKYIKSVSGNESTAMGLNVEKLKGFL 180 (180)
T ss_pred EEEECCCCHHHHHHHHhcCCccceeeeehhcC-ChhhcEEeeECCCCcCCCCCHHHHHhhC
Confidence 48999999999999999999999999999999 7899999999999999999999998875
No 14
>PRK01441 Maf-like protein; Reviewed
Probab=99.94 E-value=1.6e-27 Score=161.80 Aligned_cols=62 Identities=27% Similarity=0.351 Sum_probs=60.1
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWE 63 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~ 63 (67)
+|+|+++|+++|++|+++++|+||||||+||| .|+.||++|+|||+||||||+..|.++|++
T Consensus 133 ~V~F~~ls~~~I~~Yv~~~e~~dkAGgy~Iqg-~g~~~i~~I~G~y~nVvGLPl~~l~~~L~~ 194 (207)
T PRK01441 133 RVRFKRLSREDIEAYLASGEWRGKAGGYAIQG-IAGSFVVKLVGSYTNVVGLPLYETVSLLAG 194 (207)
T ss_pred EEEECCCCHHHHHHHHhcCCCccccccEEecc-ChhheEEEEECCccceeCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999 899999999999999999999999999986
No 15
>PRK00884 Maf-like protein; Reviewed
Probab=99.94 E-value=1.7e-27 Score=160.62 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=60.4
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeec-ccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVG-ATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G-~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++||++++|+||||||+||| .|+.||++|+| ||+||||||+..|.++|++.
T Consensus 124 ~V~f~~ls~~~I~~Yv~~~ep~dkAGay~IQg-~g~~li~~I~G~dy~nVvGLPl~~l~~~L~~~ 187 (194)
T PRK00884 124 DVHFRHLSEAEIDRYVRKEHPLHCAGSFKSEG-LGITLFERLEGRDPNTLVGLPLIALCQMLRRE 187 (194)
T ss_pred EEEECCCCHHHHHHHHhhCCCcceeeeEeecC-ChhheEEEeEECCCCcCCCCCHHHHHHHHHHc
Confidence 48999999999999999999999999999999 79999999999 99999999999999999874
No 16
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=99.94 E-value=1.9e-27 Score=160.85 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=60.2
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWE 63 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~ 63 (67)
+|+|++||+++|++|+++|+|+||||||+||| .|+.||++|+|||+||||||+..|.++|++
T Consensus 125 ~V~F~~ls~~~I~~Yv~sgepl~kAGay~iqG-~G~~fie~IeGdy~~vvGLPL~~l~~~L~~ 186 (193)
T COG0424 125 KVRFRTLSDEEIEAYVASGEPLDKAGAYGIQG-LGGLFIEKIEGDYSNVVGLPLPELVQLLRE 186 (193)
T ss_pred EEEEccCCHHHHHHHHHcCCcccccceEEeec-ccceEEEEeecCcccccCccHHHHHHHHHH
Confidence 58999999999999999999999999999999 899999999999999999999999999986
No 17
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=99.94 E-value=1.4e-27 Score=159.61 Aligned_cols=61 Identities=23% Similarity=0.374 Sum_probs=58.5
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIW 62 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~ 62 (67)
+|+|+++||++|++|+++++|+||||||+||| .+..||++|+|||+||||||+..|.++|+
T Consensus 123 ~v~f~~l~~~~I~~Yl~~~e~~dkAGay~Iqg-~g~~li~~I~Gd~~nV~GLPl~~l~~~L~ 183 (183)
T TIGR00172 123 KVHFRALDPEEIEKYVESGEPLEKAGAFGIEG-FGAPLIKKIDGDYSNVVGLPLEKLLGALR 183 (183)
T ss_pred EEEECCCCHHHHHHHHhcCCCcceeeEEEecc-ChhheEeeeECCcccccCCCHHHHHHHhC
Confidence 48999999999999999999999999999999 78999999999999999999999999874
No 18
>PRK00148 Maf-like protein; Reviewed
Probab=99.94 E-value=2.4e-27 Score=159.68 Aligned_cols=63 Identities=30% Similarity=0.474 Sum_probs=60.5
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++|+++++|+||||||+||| .+..||++|+|||+||||||+..+.++|++.
T Consensus 123 ~V~F~~l~~~~I~~Yl~~~e~~dkAGay~Iqg-~g~~~i~~I~G~~~nV~GLPl~~l~~~L~~~ 185 (194)
T PRK00148 123 EVHFAELSDEEIEAYVATGEPLDCAGAFTLQG-LGGWFVDKIEGDPSNVIGLSLPLLRRLLKRF 185 (194)
T ss_pred EEEECCCCHHHHHHHHhhCCccceeeEEEecc-ChhhcEEeeECCcccccCCCHHHHHHHHHHc
Confidence 48999999999999999999999999999999 8999999999999999999999999999873
No 19
>PRK01839 Maf-like protein; Reviewed
Probab=99.94 E-value=2.5e-27 Score=161.12 Aligned_cols=63 Identities=27% Similarity=0.385 Sum_probs=60.4
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++|+++++|+||||||+||| .|+.||++|+|||+||||||+..+.++|++.
T Consensus 143 ~V~F~~l~~~~I~~Yi~~~e~~dkAGgy~Iqg-~g~~~i~~I~G~y~nV~GLPl~~l~~~L~~~ 205 (209)
T PRK01839 143 RVRFAPATRDAIARYVASGEPFGKAGAYAIQG-RAAEFVERIDGSYSGIMGLPLFETAALLRAA 205 (209)
T ss_pred EEEECCCCHHHHHHHHhcCCChhhccEEEEcc-ChhheEEeeECCccceeCCCHHHHHHHHHHc
Confidence 48999999999999999999999999999999 7999999999999999999999999999874
No 20
>PRK00234 Maf-like protein; Reviewed
Probab=99.94 E-value=5.3e-27 Score=157.71 Aligned_cols=63 Identities=16% Similarity=0.319 Sum_probs=59.9
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeec-ccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVG-ATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G-~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++||++|++|+++|+|+||||||+||| .++.||++|+| ||+||||||+.+|.++|++.
T Consensus 124 ~v~f~~l~~~~I~~Yl~~ge~~dkAG~y~Iqg-~g~~li~~i~G~dy~nVvGLPl~~l~~~L~~~ 187 (192)
T PRK00234 124 TVHMRELDRARIERYLEAEQPLDCAGSFKAEG-LGVSLFRSTEGEDATSLIGLPLIRLVDMLLKE 187 (192)
T ss_pred EEEECCCCHHHHHHHHhcCCcccceeEEeecc-ChhhEEEEEEEcCCCcCCCCCHHHHHHHHHHc
Confidence 48999999999999999999999999999999 78899999999 99999999999999999763
No 21
>PRK14363 Maf-like protein; Provisional
Probab=99.93 E-value=4.7e-27 Score=159.59 Aligned_cols=62 Identities=27% Similarity=0.479 Sum_probs=60.1
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWE 63 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~ 63 (67)
+|+|+++|+++|++||++++|+||||||+||| .+..||++|+|||+||||||+..|.++|++
T Consensus 121 ~V~F~~ls~~~I~~Yv~~~ep~dkAG~y~Iqg-~g~~~i~~I~G~~~nV~GLPl~~l~~~L~~ 182 (204)
T PRK14363 121 KVRFRELPESVIDYYVEKYRPLDKAGAYGIQD-FAAVFVEKIEGDFFTVVGFPLGMVWQYLYE 182 (204)
T ss_pred EEEECCCCHHHHHHHHhcCCChhhcceEEEcc-CccceEEeeECCCCceeCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999 899999999999999999999999999986
No 22
>PRK14365 Maf-like protein; Provisional
Probab=99.93 E-value=6.6e-27 Score=157.95 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=60.4
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++|+++++|+||||||+||| .++.||++|+|||+||||||+..|.++|++.
T Consensus 125 ~V~f~~l~~~~I~~Yv~~~e~~dkAG~y~iq~-~g~~li~~I~G~~~nV~GLPl~~l~~~L~~~ 187 (197)
T PRK14365 125 DVWMTELSREQILAYVRTGEPLDKAGAFAIQG-KGAVLVEKIEGDFFNVVGLPLFRLGKILEKL 187 (197)
T ss_pred EEEECCCCHHHHHHHHhcCCccceeeeEEecc-CccceEEeeEcCCccccCCCHHHHHHHHHHc
Confidence 48999999999999999999999999999999 7899999999999999999999999999864
No 23
>PF02545 Maf: Maf-like protein; InterPro: IPR003697 Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea. The Maf protein shares substantial amino acid sequence identity with the Escherichia coli OrfE protein [].; GO: 0005737 cytoplasm; PDB: 2P5X_A 1EXC_B 1EX2_A.
Probab=99.93 E-value=1.8e-27 Score=160.22 Aligned_cols=62 Identities=31% Similarity=0.448 Sum_probs=50.6
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWE 63 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~ 63 (67)
+|+|+++||++|++|+++|+|+||||||+||| .++.||++|+|||+||||||+..|.++|++
T Consensus 126 ~V~F~~l~~~~I~~Yv~~ge~~~kAG~y~iqg-~g~~li~~I~G~~~nVvGLPl~~l~~~L~~ 187 (195)
T PF02545_consen 126 KVKFRPLSDEEIEAYVESGEPLDKAGGYGIQG-LGGQLIERIEGDYSNVVGLPLEELCKLLRE 187 (195)
T ss_dssp EEEE----HHHHHHHHCCTCCCCSCCC--SSC-GGGGTEEEEEC-HHHHHT--HHHHHHHHCC
T ss_pred EEEEcCCCHHHHHHHHhhccCceeeEEEeeCC-cceeeEEEEECCCCceECCCHHHHHHHHHH
Confidence 48999999999999999999999999999999 789999999999999999999999999965
No 24
>PRK02478 Maf-like protein; Reviewed
Probab=99.93 E-value=1e-26 Score=157.11 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=59.5
Q ss_pred CEEeecCCHHHHHHHHHh--CCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEE--GITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~--g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++|+++ ++|+||||||+||| .+..||++|+|||+||||||+.+|.++|++.
T Consensus 130 ~V~f~~ls~~~I~~Yv~~~g~e~~dkAG~y~Iqg-~g~~li~~I~Gdy~nVvGLPl~~l~~~L~~~ 194 (199)
T PRK02478 130 HMTMRDLDAGFIGRHLARVGEKALSSVGAYQLEG-EGIQLFEKIEGDYFTILGLPLLPLLAKLREL 194 (199)
T ss_pred EEEECCCCHHHHHHHHhcCCCCccccceeEEecC-CceeeEEEeECCccceeCCCHHHHHHHHHHc
Confidence 489999999999999999 59999999999999 7888999999999999999999999999874
No 25
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=99.93 E-value=1.3e-26 Score=154.30 Aligned_cols=60 Identities=27% Similarity=0.424 Sum_probs=57.4
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLI 61 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL 61 (67)
+|+|+++|+++|++|+++++|+||||||+||| .|..||++|+|||+||||||+..|.++|
T Consensus 121 ~v~f~~l~~~~I~~Yi~~~~~~~kAGgy~iqg-~g~~~i~~I~G~~~nV~GLPl~~l~~~L 180 (180)
T cd00555 121 KVRFRELSDEEIEAYVASGEPLDKAGAYGIQG-LGGALIERIEGDYSNVVGLPLPELLKLL 180 (180)
T ss_pred EEEECCCCHHHHHHHHhcCCccceeeEEEecc-ChhhcEEeeECCcccccCCCHHHHHhhC
Confidence 48999999999999999999999999999999 6999999999999999999999998875
No 26
>PRK04425 Maf-like protein; Reviewed
Probab=99.92 E-value=6.5e-26 Score=153.09 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=59.7
Q ss_pred CEEeecCCHHHHHHHHHhC-CcccccchhhhhcCCcccceeeeec-ccCCcccccHHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEG-ITFNVAGGLMLEHPLTLPFVEAVVG-ATDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g-~~~~kAGgy~Iq~~~~~~~v~~I~G-~~~nVvGLP~~~l~~lL~~~ 64 (67)
+|+|+++|+++|++|++++ +|+||||||+||| .+..||++|+| ||+||||||+..+.++|++.
T Consensus 127 ~V~f~~ls~~~I~~Yv~~~~~~~dkAGay~iqg-~g~~li~~I~G~~~~nVvGLPl~~l~~~L~~~ 191 (196)
T PRK04425 127 VVVMRQLDELHILRYLEREPDAVYCSCAAKSEG-LGALLIERIESTDPNALIGLPVFRLVDFLKNE 191 (196)
T ss_pred EEEECCCCHHHHHHHHhCCCCcccceeEEEecc-ChhhEEEEEEeCCCCcCCCCCHHHHHHHHHHc
Confidence 4899999999999999996 8999999999999 89999999999 89999999999999999874
No 27
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3e-25 Score=151.01 Aligned_cols=65 Identities=42% Similarity=0.703 Sum_probs=62.0
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHHhh
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEAQQ 66 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~~~ 66 (67)
+|+|.+||++.|++||++|++++|||||+||| .++.||++|+||++||||||+++++++|.+...
T Consensus 143 ~VyF~eIpee~ie~yV~sG~~lkkAGgy~Iq~-~ga~lI~~I~Gd~~nVvGLPl~~t~K~l~~~~~ 207 (209)
T KOG1509|consen 143 KVYFGEIPEEVIEEYVDSGEPLKKAGGYGIQG-LGAPLIESVVGDFDNVVGLPLELTEKLLNKVLL 207 (209)
T ss_pred EEEeccCCHHHHHHHHHcCCchhhccceeccc-ccchheeeeccCccccccCcHHHHHHHHHHHhc
Confidence 48999999999999999999999999999999 899999999999999999999999999988653
No 28
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=75.62 E-value=2.4 Score=30.16 Aligned_cols=43 Identities=28% Similarity=0.418 Sum_probs=35.0
Q ss_pred eecCCHHHHHHHHHhCCcc--cccchhhhhcCCcccceeeeecccCCccc
Q 042252 4 FHDIPDEVIDNLIEEGITF--NVAGGLMLEHPLTLPFVEAVVGATDTVMG 51 (67)
Q Consensus 4 F~~l~~~~I~~Yv~~g~~~--~kAGgy~Iq~~~~~~~v~~I~G~~~nVvG 51 (67)
+..+-..-|+.|+..|-.+ =||||| .++..|+--+|+-.+|+|
T Consensus 67 l~g~g~a~i~~yvk~GG~fLGiCAG~Y-----Fg~~~veF~~p~~~~vvg 111 (253)
T COG4285 67 LQGLGTARIKNYVKEGGNFLGICAGGY-----FGSAYVEFAEPTGIEVVG 111 (253)
T ss_pred hcchhhhhHHHHHhcCCeEEEEecccc-----ccceEEEEecCCCceeee
Confidence 3455667899999998766 699999 678889999998777777
No 29
>smart00417 H4 Histone H4.
Probab=72.61 E-value=2.9 Score=24.51 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=15.1
Q ss_pred CCcccccHHHHHHHHHH
Q 042252 47 DTVMGLSKALTEKLIWE 63 (67)
Q Consensus 47 ~nVvGLP~~~l~~lL~~ 63 (67)
+|+.|+|...+.+++++
T Consensus 9 d~i~gI~k~~IrRLaRr 25 (74)
T smart00417 9 DNIQGITKPAIRRLARR 25 (74)
T ss_pred hhhcCCCHHHHHHHHHH
Confidence 78999999999998875
No 30
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=71.68 E-value=3.2 Score=32.09 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=36.2
Q ss_pred HHHHHHHHHh-CCcccccchhhhhcCCcccceeeeecccCCcccccHHHH
Q 042252 9 DEVIDNLIEE-GITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALT 57 (67)
Q Consensus 9 ~~~I~~Yv~~-g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l 57 (67)
++.|.+|+.. +..++-||||.+=| ..-.=...++|....+=|||+..+
T Consensus 315 d~~i~~~~~~~~~viGICGG~QmLG-~~i~Dp~g~Eg~~~~~~GLgLldv 363 (486)
T COG1492 315 DEKILEYARKGGDVIGICGGYQMLG-RRLKDPSGIEGAKGEAEGLGLLDV 363 (486)
T ss_pred HHHHHHHHhCCCCEEEEcchHHhhh-hhhcCcccccCcccccCCccceEE
Confidence 4588899984 57889999998877 222334588888888889997543
No 31
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs []. Inactivation of this complex leads to a loss of thiolation on tRNAs, decreased viability and aberrant cell development. This entry represents the second subunit of this complex.
Probab=56.48 E-value=2.5 Score=25.66 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=34.3
Q ss_pred eecCCHHHHHHHHHhCCcc--------------cccchhhhhcCCcccceeeeecccCCcc
Q 042252 4 FHDIPDEVIDNLIEEGITF--------------NVAGGLMLEHPLTLPFVEAVVGATDTVM 50 (67)
Q Consensus 4 F~~l~~~~I~~Yv~~g~~~--------------~kAGgy~Iq~~~~~~~v~~I~G~~~nVv 50 (67)
+|++...||..|..--..- ....--.|+. ....||..++.+|.++|
T Consensus 38 LRd~l~kEi~~Y~~~~~l~~~~~~~~~~~~~~~~~~~~~SI~~-L~~~fi~~Le~~ypstv 97 (107)
T PF10288_consen 38 LRDLLKKEIAFYNRLCGLESVLVPSLDTDSSQSKSSKNMSINE-LTEDFIDNLEENYPSTV 97 (107)
T ss_pred hHhCCHHHHHHHHHHhCcchhhcccccccccccccCcCCCHHH-HHHHHHHHHhCcCcchH
Confidence 3678899999998754221 2355667888 78889999999988765
No 32
>PF12812 PDZ_1: PDZ-like domain
Probab=54.87 E-value=35 Score=19.73 Aligned_cols=45 Identities=16% Similarity=0.064 Sum_probs=31.3
Q ss_pred EeecCCHHHHHHHHHhCCcc---cccchhhhhc-CCcccceeeeecccC
Q 042252 3 YFHDIPDEVIDNLIEEGITF---NVAGGLMLEH-PLTLPFVEAVVGATD 47 (67)
Q Consensus 3 ~F~~l~~~~I~~Yv~~g~~~---~kAGgy~Iq~-~~~~~~v~~I~G~~~ 47 (67)
.|++||.+....|.-.-... ..+|+++-++ ...+.+|.+|+|-..
T Consensus 14 ~f~~Ls~q~aR~~~~~~~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt 62 (78)
T PF12812_consen 14 VFHDLSYQQARQYGIPVGGVYVAVSGGSLAFAGGISKGFIITSVNGKPT 62 (78)
T ss_pred ecccCCHHHHHHhCCCCCEEEEEecCCChhhhCCCCCCeEEEeECCcCC
Confidence 57899999999997543222 3456666666 456678999998653
No 33
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=51.63 E-value=31 Score=19.50 Aligned_cols=42 Identities=14% Similarity=0.040 Sum_probs=29.5
Q ss_pred EEee---cCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccH
Q 042252 2 VYFH---DIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSK 54 (67)
Q Consensus 2 V~F~---~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~ 54 (67)
|+++ +|+.++|.+|++.- |.-++ ...|+.|+.+--||+=-.-
T Consensus 8 vhirGvd~lsT~dI~~y~~~y--------~~~~~---~~~IEWIdDtScNvvf~d~ 52 (62)
T PF10309_consen 8 VHIRGVDELSTDDIKAYFSEY--------FDEEG---PFRIEWIDDTSCNVVFKDE 52 (62)
T ss_pred EEEEcCCCCCHHHHHHHHHHh--------cccCC---CceEEEecCCcEEEEECCH
Confidence 4554 68999999999865 33333 3579999988888774433
No 34
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=47.67 E-value=14 Score=22.09 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.6
Q ss_pred CCcccccHHHHHHHHHH
Q 042252 47 DTVMGLSKALTEKLIWE 63 (67)
Q Consensus 47 ~nVvGLP~~~l~~lL~~ 63 (67)
+|+.|+|...+.+++++
T Consensus 9 ~~~~gi~k~~I~RLarr 25 (85)
T cd00076 9 DNIKGITKPAIRRLARR 25 (85)
T ss_pred HhhccCCHHHHHHHHHH
Confidence 68899999999988865
No 35
>PLN00035 histone H4; Provisional
Probab=46.80 E-value=15 Score=22.88 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=15.4
Q ss_pred cCCcccccHHHHHHHHHH
Q 042252 46 TDTVMGLSKALTEKLIWE 63 (67)
Q Consensus 46 ~~nVvGLP~~~l~~lL~~ 63 (67)
-+|+.|||...+.+++++
T Consensus 24 ~d~i~~ipk~~IrRLARr 41 (103)
T PLN00035 24 RDNIQGITKPAIRRLARR 41 (103)
T ss_pred HhhhccCCHHHHHHHHHH
Confidence 378999999999998875
No 36
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=46.69 E-value=17 Score=23.25 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.8
Q ss_pred cCCHHHHHHHHHhCCcccccchhhhhc
Q 042252 6 DIPDEVIDNLIEEGITFNVAGGLMLEH 32 (67)
Q Consensus 6 ~l~~~~I~~Yv~~g~~~~kAGgy~Iq~ 32 (67)
..++++|.++|++|. +|=||..|+
T Consensus 81 ~~~eeeI~~~v~~GK---~AFGft~~h 104 (117)
T PF10941_consen 81 IPSEEEIRKEVAEGK---KAFGFTAQH 104 (117)
T ss_pred CCCHHHHHHHHHcCC---eeeeccHHH
Confidence 478999999999996 788888877
No 37
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=42.16 E-value=24 Score=17.50 Aligned_cols=16 Identities=13% Similarity=0.300 Sum_probs=13.7
Q ss_pred eecCCHHHHHHHHHhC
Q 042252 4 FHDIPDEVIDNLIEEG 19 (67)
Q Consensus 4 F~~l~~~~I~~Yv~~g 19 (67)
|...|++++++|+++.
T Consensus 1 fdtWs~~~L~~wL~~~ 16 (38)
T PF10281_consen 1 FDTWSDSDLKSWLKSH 16 (38)
T ss_pred CCCCCHHHHHHHHHHc
Confidence 6678999999999873
No 38
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=37.41 E-value=24 Score=22.43 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCC-cccccchhhhhcCCcccceeeeecccCC
Q 042252 9 DEVIDNLIEEGI-TFNVAGGLMLEHPLTLPFVEAVVGATDT 48 (67)
Q Consensus 9 ~~~I~~Yv~~g~-~~~kAGgy~Iq~~~~~~~v~~I~G~~~n 48 (67)
.+.|++++++|- .+.-||||..=+ ..+++.++|+...
T Consensus 32 ~~~I~~~~~~G~pi~aeCGG~~~Lg---~~i~d~~e~~~~g 69 (158)
T PF07685_consen 32 KEAIREAAEAGGPIYAECGGYQYLG---ESIIDGVEGDADG 69 (158)
T ss_pred HHHHHHHHHcCCcEEEEchHHHHHH---HHHhhccccCCCC
Confidence 478999999975 669999998766 3345566665554
No 39
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=36.96 E-value=25 Score=26.16 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCcc--cccchhh
Q 042252 10 EVIDNLIEEGITF--NVAGGLM 29 (67)
Q Consensus 10 ~~I~~Yv~~g~~~--~kAGgy~ 29 (67)
.-|++||++|-.+ =|||||-
T Consensus 73 ~~Ir~fV~~GG~YlGiCAGaY~ 94 (367)
T PF09825_consen 73 RRIRQFVENGGGYLGICAGAYY 94 (367)
T ss_pred HHHHHHHHcCCcEEEECcchhh
Confidence 4899999998655 6999994
No 40
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=35.96 E-value=19 Score=26.32 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=25.6
Q ss_pred cccchhhhhcCCcccceeeee-cccCCcccccHHHHHH
Q 042252 23 NVAGGLMLEHPLTLPFVEAVV-GATDTVMGLSKALTEK 59 (67)
Q Consensus 23 ~kAGgy~Iq~~~~~~~v~~I~-G~~~nVvGLP~~~l~~ 59 (67)
..-|+|+|.....-.|=-.++ |+|.-|.|||+..+.+
T Consensus 272 ~sDGsYgip~gli~SfPv~~k~g~wkiVqgl~iddf~r 309 (332)
T KOG1496|consen 272 YSDGSYGIPDGLIFSFPVTIKNGDWKIVQGLPIDDFSR 309 (332)
T ss_pred ecCCCCCCCCCeEEEcceEecCCceEEEcCcchhHHHH
Confidence 355889998733333333444 8999999999987654
No 41
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=35.89 E-value=35 Score=18.67 Aligned_cols=13 Identities=54% Similarity=0.851 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHhC
Q 042252 7 IPDEVIDNLIEEG 19 (67)
Q Consensus 7 l~~~~I~~Yv~~g 19 (67)
+||+.++.|++..
T Consensus 3 IPD~v~~~yL~~~ 15 (51)
T PF03540_consen 3 IPDEVTDYYLERS 15 (51)
T ss_pred CCHHHHHHHHHHC
Confidence 7999999999754
No 42
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=34.24 E-value=36 Score=18.76 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=11.2
Q ss_pred ecCCHHHHHHHHH
Q 042252 5 HDIPDEVIDNLIE 17 (67)
Q Consensus 5 ~~l~~~~I~~Yv~ 17 (67)
|++++++++.|++
T Consensus 17 Rp~~~~e~~~~~~ 29 (64)
T PF07637_consen 17 RPLTDEEVDRYLA 29 (64)
T ss_pred CCCCHHHHHHHHH
Confidence 4899999999985
No 43
>PF04369 Lactococcin: Lactococcin-like family; InterPro: IPR007464 Bacteriocins are produced by bacteria to inhibit the growth of similar or closely related bacterial strains. The class II bacteriocins are small heat-stable proteins for which disulphide bonds are the only modification to the peptide. Lactococcin A and B are class-IId bacteriocins (one-peptide non-pediocin-like bacteriocin) [, ].; GO: 0042742 defense response to bacterium, 0005576 extracellular region
Probab=32.34 E-value=28 Score=19.78 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=13.9
Q ss_pred CEEeecCCHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIE 17 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~ 17 (67)
++.|+.+||+|+....-
T Consensus 4 ~~nf~~~sdeeL~~i~G 20 (60)
T PF04369_consen 4 QLNFNILSDEELSKING 20 (60)
T ss_pred cccceecCHHHHhhccC
Confidence 46799999999998753
No 44
>PTZ00015 histone H4; Provisional
Probab=32.18 E-value=40 Score=20.88 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=15.5
Q ss_pred cCCcccccHHHHHHHHHH
Q 042252 46 TDTVMGLSKALTEKLIWE 63 (67)
Q Consensus 46 ~~nVvGLP~~~l~~lL~~ 63 (67)
-+|+.|+|...+.+++++
T Consensus 25 r~~i~gI~k~~IrRLarr 42 (102)
T PTZ00015 25 RDNIRGITKGAIRRLARR 42 (102)
T ss_pred hhcccCCCHHHHHHHHHH
Confidence 489999999999998875
No 45
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=30.66 E-value=31 Score=21.50 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCcc--cccchhhh
Q 042252 9 DEVIDNLIEEGITF--NVAGGLML 30 (67)
Q Consensus 9 ~~~I~~Yv~~g~~~--~kAGgy~I 30 (67)
.+.|++|+++|.|+ =|+|||--
T Consensus 67 ~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 67 NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred cHHHHHHHHCCCcEEEEecCccce
Confidence 67899999988887 68999964
No 46
>PF13262 DUF4054: Protein of unknown function (DUF4054)
Probab=30.32 E-value=44 Score=19.96 Aligned_cols=18 Identities=39% Similarity=0.704 Sum_probs=14.2
Q ss_pred EeecCCHHHHHHHHHhCC
Q 042252 3 YFHDIPDEVIDNLIEEGI 20 (67)
Q Consensus 3 ~F~~l~~~~I~~Yv~~g~ 20 (67)
.|.++||+.|+.|++.-+
T Consensus 7 ~f~~~pd~~i~~~l~~A~ 24 (106)
T PF13262_consen 7 EFADVPDETIQAWLEDAE 24 (106)
T ss_pred CccCCCHHHHHHHHHHHH
Confidence 367889999999997643
No 47
>PF03752 ALF: Short repeats of unknown function; InterPro: IPR005506 This set of repeats is found in a small family of secreted proteins of no known function, which may be involved in signal transduction.
Probab=29.32 E-value=47 Score=17.04 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHhC
Q 042252 7 IPDEVIDNLIEEG 19 (67)
Q Consensus 7 l~~~~I~~Yv~~g 19 (67)
=+++.|..||++|
T Consensus 26 G~~~~l~~FL~~G 38 (43)
T PF03752_consen 26 GTPEALREFLETG 38 (43)
T ss_pred CCHHHHHHHHHHh
Confidence 3789999999987
No 48
>PRK06764 hypothetical protein; Provisional
Probab=28.05 E-value=23 Score=21.89 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=17.0
Q ss_pred hhhhcCCcccceeeeecccCC
Q 042252 28 LMLEHPLTLPFVEAVVGATDT 48 (67)
Q Consensus 28 y~Iq~~~~~~~v~~I~G~~~n 48 (67)
|.||=..-+.+|-|++||.+|
T Consensus 76 yti~f~kpg~yvirvngciy~ 96 (105)
T PRK06764 76 YTIRFSKPGKYVIRVNGCIYN 96 (105)
T ss_pred eEEEecCCccEEEEEccEEee
Confidence 777765667899999999876
No 49
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=27.68 E-value=13 Score=19.32 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=10.5
Q ss_pred ccCCcccccHHHHHHHH
Q 042252 45 ATDTVMGLSKALTEKLI 61 (67)
Q Consensus 45 ~~~nVvGLP~~~l~~lL 61 (67)
+++.|+|+|.......|
T Consensus 2 ~~y~vLgl~~~~~~~~i 18 (60)
T smart00271 2 DYYEILGVPRDASLDEI 18 (60)
T ss_pred CHHHHcCCCCCCCHHHH
Confidence 57788888754444433
No 50
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=27.67 E-value=63 Score=18.01 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=14.1
Q ss_pred ecCCHHHHHHHHHhCC
Q 042252 5 HDIPDEVIDNLIEEGI 20 (67)
Q Consensus 5 ~~l~~~~I~~Yv~~g~ 20 (67)
+.||+++++..++.|.
T Consensus 14 k~lt~~~~~~Ll~~gk 29 (62)
T PF13342_consen 14 KKLTDEEVKELLEKGK 29 (62)
T ss_pred CCCCHHHHHHHHHcCC
Confidence 5799999999998874
No 51
>PRK12866 YciI-like protein; Reviewed
Probab=27.20 E-value=84 Score=18.70 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=20.8
Q ss_pred EeecCCHHHHHHHHHhCCcccccchhh
Q 042252 3 YFHDIPDEVIDNLIEEGITFNVAGGLM 29 (67)
Q Consensus 3 ~F~~l~~~~I~~Yv~~g~~~~kAGgy~ 29 (67)
.|+.-|.++++++++ .+||.+||-+.
T Consensus 53 i~~a~s~~e~~~~l~-~DPf~~~gl~~ 78 (97)
T PRK12866 53 VFEGDSPAAAEAFAR-ADPYVRNGLVK 78 (97)
T ss_pred EEEeCCHHHHHHHHH-cCChhhcCCEE
Confidence 456678899999997 56999998763
No 52
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=26.92 E-value=34 Score=25.12 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=11.8
Q ss_pred ccCCcccccHHHHHH
Q 042252 45 ATDTVMGLSKALTEK 59 (67)
Q Consensus 45 ~~~nVvGLP~~~l~~ 59 (67)
.-+++||+|+..|.+
T Consensus 173 gRS~iVg~P~A~LL~ 187 (309)
T KOG0089|consen 173 GRSKIVGMPLALLLH 187 (309)
T ss_pred cccccccchHHHHHh
Confidence 358999999988753
No 53
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=26.57 E-value=15 Score=18.62 Aligned_cols=17 Identities=12% Similarity=0.280 Sum_probs=10.0
Q ss_pred ccCCcccccHHHHHHHH
Q 042252 45 ATDTVMGLSKALTEKLI 61 (67)
Q Consensus 45 ~~~nVvGLP~~~l~~lL 61 (67)
+|+.|+|+|-....+.|
T Consensus 1 ~~y~vLgl~~~~~~~~i 17 (55)
T cd06257 1 DYYDILGVPPDASDEEI 17 (55)
T ss_pred ChHHHcCCCCCCCHHHH
Confidence 46778888744443333
No 54
>PHA02782 hypothetical protein; Provisional
Probab=26.17 E-value=1.1e+02 Score=23.99 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=36.7
Q ss_pred EEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHH
Q 042252 2 VYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKA 55 (67)
Q Consensus 2 V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~ 55 (67)
|.|+.+|.+.+..|+..--|-.- =||+=-+ |+-++-.++++--.|+|.+..
T Consensus 361 VEfK~FSTkkl~~rIKEiLP~yV-SAFANT~--GGyLfIGVdDdt~~IiG~~~e 411 (503)
T PHA02782 361 VKHTSVSAKQLRTRIRQQLPSIL-SSFANTE--GGYLFIGVDNNTHKVIGFTVG 411 (503)
T ss_pred EEEEEccHHHHHHHHHHHhhHHh-HhheeCC--CCEEEEEEcCCCCeEeeeecC
Confidence 78999999989998876544332 3555333 455777888888899999943
No 55
>PTZ00246 proteasome subunit alpha; Provisional
Probab=26.05 E-value=56 Score=22.26 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=13.8
Q ss_pred eecCCHHHHHHHHHh
Q 042252 4 FHDIPDEVIDNLIEE 18 (67)
Q Consensus 4 F~~l~~~~I~~Yv~~ 18 (67)
|+.+++++|+.|+++
T Consensus 226 ~~~l~~~ei~~~l~~ 240 (253)
T PTZ00246 226 QKMLSEKEIAELLKK 240 (253)
T ss_pred eEECCHHHHHHHHHH
Confidence 889999999999976
No 56
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.66 E-value=98 Score=16.70 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=14.9
Q ss_pred EEeecCCHHHHHHHHHh
Q 042252 2 VYFHDIPDEVIDNLIEE 18 (67)
Q Consensus 2 V~F~~l~~~~I~~Yv~~ 18 (67)
+-|..+++++++.++..
T Consensus 4 ll~~g~~~~el~~~l~~ 20 (58)
T PF12646_consen 4 LLFSGFSGEELDKFLDA 20 (58)
T ss_pred EEECCCCHHHHHHHHHH
Confidence 56889999999999975
No 57
>PRK10598 lipoprotein; Provisional
Probab=24.62 E-value=46 Score=22.64 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=15.9
Q ss_pred ecCCHHHHHHHHHhCCcccc
Q 042252 5 HDIPDEVIDNLIEEGITFNV 24 (67)
Q Consensus 5 ~~l~~~~I~~Yv~~g~~~~k 24 (67)
..+|++||+.|++..-.+.+
T Consensus 25 ysISE~Ein~yL~k~~~~~k 44 (186)
T PRK10598 25 YTISEQEINQYLAKHNNFEK 44 (186)
T ss_pred eeecHHHHHHHHHHhccHHH
Confidence 46899999999988765644
No 58
>PF11609 DUF3248: Protein of unknown function (DUF3248); InterPro: IPR021650 This family of proteins is thought to be the product of the gene TT1592 from Thermus thermophilus however this cannot be confirmed. Currently there is no known function. ; PDB: 2E6X_A.
Probab=24.51 E-value=64 Score=18.44 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=10.9
Q ss_pred eecCCHHHHHHHHHhCC
Q 042252 4 FHDIPDEVIDNLIEEGI 20 (67)
Q Consensus 4 F~~l~~~~I~~Yv~~g~ 20 (67)
.++.+|++|++-++.|.
T Consensus 40 Lrnv~daeie~~~~~G~ 56 (63)
T PF11609_consen 40 LRNVSDAEIEAAVQEGR 56 (63)
T ss_dssp -B---HHHHHHHHHCT-
T ss_pred hccCCHHHHHHHHHcCc
Confidence 47889999999998874
No 59
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=23.54 E-value=75 Score=17.34 Aligned_cols=13 Identities=8% Similarity=0.447 Sum_probs=11.4
Q ss_pred cCCHHHHHHHHHh
Q 042252 6 DIPDEVIDNLIEE 18 (67)
Q Consensus 6 ~l~~~~I~~Yv~~ 18 (67)
|||++|+++.++|
T Consensus 52 PL~~~Ev~~i~kS 64 (71)
T PF08708_consen 52 PLPESEVKAIAKS 64 (71)
T ss_pred CCCHHHHHHHHHH
Confidence 6999999998876
No 60
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=22.97 E-value=1.2e+02 Score=15.31 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=15.7
Q ss_pred EeecCCHHHHHHHHHhCCc
Q 042252 3 YFHDIPDEVIDNLIEEGIT 21 (67)
Q Consensus 3 ~F~~l~~~~I~~Yv~~g~~ 21 (67)
...|+|.+++.+.+++|+.
T Consensus 10 ~~GP~s~~el~~l~~~g~i 28 (45)
T PF14237_consen 10 QQGPFSLEELRQLISSGEI 28 (45)
T ss_pred EECCcCHHHHHHHHHcCCC
Confidence 3568999999999999853
No 61
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=22.57 E-value=85 Score=15.17 Aligned_cols=15 Identities=7% Similarity=0.324 Sum_probs=12.4
Q ss_pred eecCCHHHHHHHHHh
Q 042252 4 FHDIPDEVIDNLIEE 18 (67)
Q Consensus 4 F~~l~~~~I~~Yv~~ 18 (67)
|+-...+++++|++.
T Consensus 15 ~rGY~~~eVD~fLd~ 29 (34)
T TIGR03544 15 LRGYDAAEVDAFLDR 29 (34)
T ss_pred CCCCCHHHHHHHHHH
Confidence 567889999999975
No 62
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=21.40 E-value=77 Score=21.15 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=13.7
Q ss_pred EeecCCHHHHHHHHHh
Q 042252 3 YFHDIPDEVIDNLIEE 18 (67)
Q Consensus 3 ~F~~l~~~~I~~Yv~~ 18 (67)
.|+.+++++|+.|+..
T Consensus 198 g~~~l~~~ei~~~~~~ 213 (219)
T TIGR03690 198 GARRVPESELEELARA 213 (219)
T ss_pred ceEEcCHHHHHHHHHH
Confidence 3788999999999964
No 63
>PRK12864 YciI-like protein; Reviewed
Probab=20.94 E-value=1.2e+02 Score=17.61 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=18.8
Q ss_pred eecCCHHHHHHHHHhCCcccccchh
Q 042252 4 FHDIPDEVIDNLIEEGITFNVAGGL 28 (67)
Q Consensus 4 F~~l~~~~I~~Yv~~g~~~~kAGgy 28 (67)
|..=|.++++++++ .+|+-+||-+
T Consensus 54 ~~a~s~eea~~~~~-~DPy~~aGl~ 77 (89)
T PRK12864 54 FEAEDEETVRQLIE-ADPYWQNGIW 77 (89)
T ss_pred EEeCCHHHHHHHHH-cCCchhcCCe
Confidence 34457899999997 6699999875
No 64
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=20.80 E-value=89 Score=19.12 Aligned_cols=15 Identities=27% Similarity=0.652 Sum_probs=13.0
Q ss_pred cCCHHHHHHHHHhCC
Q 042252 6 DIPDEVIDNLIEEGI 20 (67)
Q Consensus 6 ~l~~~~I~~Yv~~g~ 20 (67)
+.+|++|++.+++|.
T Consensus 129 ~~tdeei~~~~~~~~ 143 (151)
T cd00179 129 EATDEELEDMLESGN 143 (151)
T ss_pred CCChHHHHHHHHcCC
Confidence 589999999999874
No 65
>PF13154 DUF3991: Protein of unknown function (DUF3991)
Probab=20.49 E-value=93 Score=17.49 Aligned_cols=17 Identities=29% Similarity=0.685 Sum_probs=14.3
Q ss_pred ecCCHHHHHHHHHhCCc
Q 042252 5 HDIPDEVIDNLIEEGIT 21 (67)
Q Consensus 5 ~~l~~~~I~~Yv~~g~~ 21 (67)
|.||++.|+.+++.+-.
T Consensus 7 RgI~~~~v~~~~~~g~i 23 (77)
T PF13154_consen 7 RGIDPEIVDAFINQGLI 23 (77)
T ss_pred cCcCHHHHHHHHHCCCE
Confidence 67999999999987643
No 66
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=20.36 E-value=1.2e+02 Score=15.52 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=14.9
Q ss_pred cCCcccccHHHHHHHHHHHhh
Q 042252 46 TDTVMGLSKALTEKLIWEAQQ 66 (67)
Q Consensus 46 ~~nVvGLP~~~l~~lL~~~~~ 66 (67)
...-.|+|...+.++|....+
T Consensus 24 ia~~~gl~~stv~r~L~tL~~ 44 (52)
T PF09339_consen 24 IARALGLPKSTVHRLLQTLVE 44 (52)
T ss_dssp HHHHHTS-HHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHH
Confidence 344578999999999877654
No 67
>PF15581 Imm35: Immunity protein 35
Probab=20.23 E-value=1.1e+02 Score=18.77 Aligned_cols=17 Identities=12% Similarity=0.005 Sum_probs=14.1
Q ss_pred ccccHHHHHHHHHHHhh
Q 042252 50 MGLSKALTEKLIWEAQQ 66 (67)
Q Consensus 50 vGLP~~~l~~lL~~~~~ 66 (67)
-|||...+.+.|+.+-+
T Consensus 44 RGl~~~qV~~kl~ava~ 60 (93)
T PF15581_consen 44 RGLPEEQVLYKLEAVAA 60 (93)
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 58999999999987654
No 68
>PF15636 Tox-GHH: GHH signature containing HNH/Endo VII superfamily nuclease toxin
Probab=20.08 E-value=1.1e+02 Score=17.83 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=15.8
Q ss_pred ecCCHHHHHHHHHhCCcc
Q 042252 5 HDIPDEVIDNLIEEGITF 22 (67)
Q Consensus 5 ~~l~~~~I~~Yv~~g~~~ 22 (67)
+++|+++.+..+.+|.+-
T Consensus 35 r~Wt~~Ek~ell~~G~v~ 52 (79)
T PF15636_consen 35 RNWTEEEKQELLSTGKVS 52 (79)
T ss_pred CccCHHHHHHHHHcCCCC
Confidence 568999999999999776
Done!