Query 042252
Match_columns 67
No_of_seqs 112 out of 1030
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 07:08:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p5x_A ASMTL, N-acetylserotoni 99.9 1.3E-28 4.6E-33 168.4 4.4 64 1-65 140-203 (230)
2 1ex2_A Protein MAF; structural 99.9 7E-29 2.4E-33 165.8 2.9 62 1-63 123-184 (189)
3 2amh_A Septum formation protei 99.9 8.2E-29 2.8E-33 167.4 2.2 63 1-63 144-206 (207)
4 2hue_C Histone H4; mini beta s 46.6 11 0.00037 21.2 1.8 17 47-63 6-22 (84)
5 1id3_B Histone H4; nucleosome 40.4 19 0.00064 21.1 2.2 18 46-63 23-40 (102)
6 2l1a_A Formin-C, @; fruiting B 38.6 10 0.00035 22.5 0.9 31 10-40 47-78 (107)
7 3lqv_P Splicing factor 3B subu 35.4 19 0.00065 18.1 1.4 13 5-17 21-33 (39)
8 1nho_A Probable thioredoxin; b 34.0 15 0.00053 18.5 1.0 38 23-65 46-84 (85)
9 2d0s_A Cytochrome C, cytochrom 32.3 23 0.0008 18.2 1.6 14 4-17 60-73 (79)
10 1tzy_D Histone H4-VI; histone- 32.2 31 0.0011 20.0 2.3 19 45-63 23-41 (103)
11 2yfw_B Histone H4, H4; cell cy 27.8 34 0.0012 19.8 1.9 18 46-63 24-41 (103)
12 2l27_B Peptide agonist; CRF, E 25.6 38 0.0013 16.8 1.6 14 53-66 4-17 (38)
13 3h4p_a Proteasome subunit beta 25.2 41 0.0014 21.3 2.1 17 3-19 186-202 (219)
14 2jo4_A KIA7; peptide, oligomer 25.0 14 0.00048 16.7 -0.1 9 22-30 15-23 (26)
15 2rmf_A Urocortin, HUCN1; CRF l 23.4 45 0.0015 16.7 1.6 14 53-66 6-19 (40)
16 3fgx_A Rbstp2171; structural g 23.0 64 0.0022 19.6 2.6 19 3-21 41-59 (114)
17 3ouv_A Serine/threonine protei 23.0 53 0.0018 17.0 2.0 19 46-64 10-28 (71)
18 2fho_A Spliceosomal protein SF 23.0 18 0.0006 18.9 -0.0 14 4-17 19-32 (47)
19 1ydu_A AT5G01610; DUF538, stru 22.7 35 0.0012 22.0 1.4 28 19-47 2-29 (170)
20 2pa8_L DNA-directed RNA polyme 22.4 89 0.0031 17.7 3.0 48 12-65 28-77 (92)
21 2e6x_A TT1592, hypothetical pr 22.3 58 0.002 18.1 2.1 17 4-20 45-61 (69)
22 1a56_A C-551, ferricytochrome 21.6 35 0.0012 17.6 1.1 13 5-17 63-75 (81)
23 1i16_A Interleukin 16, LCF; cy 21.3 48 0.0017 19.2 1.7 38 19-63 67-104 (130)
24 2dm9_A V-type ATP synthase sub 21.3 40 0.0014 20.4 1.4 42 21-65 155-196 (198)
25 1kw4_A Polyhomeotic; SAM domai 20.4 64 0.0022 18.1 2.1 60 4-63 14-74 (89)
26 1xpp_A TA1416, DNA-directed RN 20.4 1.1E+02 0.0037 18.2 3.2 38 24-65 49-86 (115)
No 1
>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protei; structural genomics, structural genomics consortium, unknown function; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.3e-28 Score=168.41 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=61.0
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHHh
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEAQ 65 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~~ 65 (67)
+|+|++||+++|++||++|+|+||||||+||| .|+.||++|+|||+||||||+..|.++|+++.
T Consensus 140 ~V~F~~lsd~eI~~Yi~tgep~dkAGaY~IQg-~g~~~v~~I~Gdy~nVvGLPl~~l~~~L~~~g 203 (230)
T 2p5x_A 140 KVKFSELSEELLWEYVHSGEPMDKAGGYGIQA-LGGMLVESVHGDFLNVVGFPLNHFCKQLVKLY 203 (230)
T ss_dssp EEEECCCCHHHHHHHHHHTGGGGSGGGCCSSS-GGGGTEEEEEECHHHHHTCCHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHhcCCCCceeeeEeecC-ChhhcEeeeECCCCceecCCHHHHHHHHHHcC
Confidence 48999999999999999999999999999999 78999999999999999999999999998753
No 2
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=99.95 E-value=7e-29 Score=165.82 Aligned_cols=62 Identities=26% Similarity=0.296 Sum_probs=59.6
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWE 63 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~ 63 (67)
+|+|+++|+++|++||++|+|+||||||+||| .++.||++|+|||+||||||+..|.++|++
T Consensus 123 ~V~F~~ls~~eI~~Yi~tgep~dkAGay~Iqg-~g~~~v~~I~Gdy~nVvGLPl~~l~~~L~~ 184 (189)
T 1ex2_A 123 EVAFWSLSEEEIWTYIETKEPMDKAGAYGIQG-RGALFVKKIDGDYYSVMGLPISKTMRALRH 184 (189)
T ss_dssp EEEECCCCHHHHHHHHTTTSGGGSTTSCCSSG-GGGGTEEEEESCHHHHHTCCHHHHHHHHTT
T ss_pred EEEEcCCCHHHHHHHHhhCCccceeeEEhhcC-ChhheEEEeECCCCceecCCHHHHHHHHHH
Confidence 48999999999999999999999999999999 789999999999999999999999999965
No 3
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Probab=99.94 E-value=8.2e-29 Score=167.37 Aligned_cols=63 Identities=30% Similarity=0.527 Sum_probs=59.9
Q ss_pred CEEeecCCHHHHHHHHHhCCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHH
Q 042252 1 MVYFHDIPDEVIDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWE 63 (67)
Q Consensus 1 ~V~F~~l~~~~I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~ 63 (67)
+|+|+++|+++|++||++|+|+||||||+|||+.++.||++|+|||+||||||+..|.++|++
T Consensus 144 ~V~F~~ls~~eI~~Yi~tgep~dkAGaY~Iqg~~g~~~v~~I~Gdy~nVvGLPl~~l~~~L~~ 206 (207)
T 2amh_A 144 ETFFSKFGDDIVERTLERGACMNSAGGLVVEDEDMSRHVVRIVGTSYGVRGMEPAVVEKLLSQ 206 (207)
T ss_dssp EEEECCCCHHHHHHHHHHCGGGGSGGGCCTTSHHHHTTEEEEESCHHHHHTCCHHHHHHHHHT
T ss_pred EEEEcCCCHHHHHHHHhcCCcccEeeeeeccCCchhccEeeeECcCCceecCCHHHHHHHHhh
Confidence 489999999999999999999999999999996688899999999999999999999999975
No 4
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=46.59 E-value=11 Score=21.19 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=14.8
Q ss_pred CCcccccHHHHHHHHHH
Q 042252 47 DTVMGLSKALTEKLIWE 63 (67)
Q Consensus 47 ~nVvGLP~~~l~~lL~~ 63 (67)
+|+.|||...+.+++++
T Consensus 6 ~~~~~ip~~~I~Riar~ 22 (84)
T 2hue_C 6 DNIQGITKPAIRRLARR 22 (84)
T ss_dssp GGCCSSCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHH
Confidence 68899999999988875
No 5
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=40.44 E-value=19 Score=21.10 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=15.3
Q ss_pred cCCcccccHHHHHHHHHH
Q 042252 46 TDTVMGLSKALTEKLIWE 63 (67)
Q Consensus 46 ~~nVvGLP~~~l~~lL~~ 63 (67)
-+|+.|||...+.+++++
T Consensus 23 r~~i~~ip~~~I~Rlar~ 40 (102)
T 1id3_B 23 RDNIQGITKPAIRRLARR 40 (102)
T ss_dssp -CCGGGSCHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHH
Confidence 488999999999998875
No 6
>2l1a_A Formin-C, @; fruiting BODY formation, actin binding protein; NMR {Dictyostelium discoideum}
Probab=38.60 E-value=10 Score=22.48 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=22.7
Q ss_pred HHHHHHHHh-CCcccccchhhhhcCCccccee
Q 042252 10 EVIDNLIEE-GITFNVAGGLMLEHPLTLPFVE 40 (67)
Q Consensus 10 ~~I~~Yv~~-g~~~~kAGgy~Iq~~~~~~~v~ 40 (67)
+.|+-.+.. .-|.+|.++|++|.|.--.+|+
T Consensus 47 dhikvllthfkipi~kv~syalqnp~tl~yve 78 (107)
T 2l1a_A 47 DHIKVLLTHFKIPVDKVSSYALQNPFTLAYVE 78 (107)
T ss_dssp HHHHHHHHHTTCCGGGGGGEEEECTTTCCBCC
T ss_pred HHHHHHHHHccccHHhhhhhHhcCCceeehhh
Confidence 456666654 4689999999999986655554
No 7
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=35.36 E-value=19 Score=18.09 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=11.0
Q ss_pred ecCCHHHHHHHHH
Q 042252 5 HDIPDEVIDNLIE 17 (67)
Q Consensus 5 ~~l~~~~I~~Yv~ 17 (67)
|+++|+++++.+-
T Consensus 21 rpltDEeLD~mLP 33 (39)
T 3lqv_P 21 RPLSDEELDAMFP 33 (39)
T ss_dssp CCCCHHHHHHTCC
T ss_pred CCCCHHHHHHhCC
Confidence 6899999998774
No 8
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=34.01 E-value=15 Score=18.54 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=26.8
Q ss_pred cccchhhhhcCCcccceeeeecccCCcccc-cHHHHHHHHHHHh
Q 042252 23 NVAGGLMLEHPLTLPFVEAVVGATDTVMGL-SKALTEKLIWEAQ 65 (67)
Q Consensus 23 ~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGL-P~~~l~~lL~~~~ 65 (67)
.-+-.|+|++ .-..++ +|.. ...|. +...+.+.|++.+
T Consensus 46 ~~~~~~~v~~-~Pt~~~---~G~~-~~~G~~~~~~l~~~l~~~l 84 (85)
T 1nho_A 46 EKAIEYGLMA-VPAIAI---NGVV-RFVGAPSREELFEAINDEM 84 (85)
T ss_dssp GGGGGTCSSC-SSEEEE---TTTE-EEECSSCCHHHHHHHHHHC
T ss_pred HHHHhCCcee-eCEEEE---CCEE-EEccCCCHHHHHHHHHHHh
Confidence 4567788888 344444 7876 67786 6778888887765
No 9
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=32.28 E-value=23 Score=18.21 Aligned_cols=14 Identities=7% Similarity=0.399 Sum_probs=10.7
Q ss_pred eecCCHHHHHHHHH
Q 042252 4 FHDIPDEVIDNLIE 17 (67)
Q Consensus 4 F~~l~~~~I~~Yv~ 17 (67)
|..|||++|++.++
T Consensus 60 ~~~Ls~~ei~~l~~ 73 (79)
T 2d0s_A 60 HPQVAEADIEKIVR 73 (79)
T ss_dssp CTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 44789999988764
No 10
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=32.18 E-value=31 Score=19.96 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=16.8
Q ss_pred ccCCcccccHHHHHHHHHH
Q 042252 45 ATDTVMGLSKALTEKLIWE 63 (67)
Q Consensus 45 ~~~nVvGLP~~~l~~lL~~ 63 (67)
.-+|+-|||...+.+++++
T Consensus 23 ~r~~~~gip~~~I~Rlar~ 41 (103)
T 1tzy_D 23 LRDNIQGITKPAIRRLARR 41 (103)
T ss_dssp CCCGGGGSCHHHHHHHHHH
T ss_pred hhhhcccCCHHHHHHHHHH
Confidence 6789999999999999875
No 11
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=27.84 E-value=34 Score=19.84 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=10.8
Q ss_pred cCCcccccHHHHHHHHHH
Q 042252 46 TDTVMGLSKALTEKLIWE 63 (67)
Q Consensus 46 ~~nVvGLP~~~l~~lL~~ 63 (67)
-+|+-|||...+.+++++
T Consensus 24 r~~~~gip~~~I~Rlar~ 41 (103)
T 2yfw_B 24 RDNIQGITKPAIRRLARR 41 (103)
T ss_dssp ------CCHHHHHHHHHH
T ss_pred hhhhccCCHHHHHHHHHH
Confidence 588899999999999875
No 12
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=25.60 E-value=38 Score=16.84 Aligned_cols=14 Identities=36% Similarity=0.292 Sum_probs=9.0
Q ss_pred cHHHHHHHHHHHhh
Q 042252 53 SKALTEKLIWEAQQ 66 (67)
Q Consensus 53 P~~~l~~lL~~~~~ 66 (67)
++..++++|+++++
T Consensus 4 SlDLTFhlLR~m~e 17 (38)
T 2l27_B 4 SLDLTFNLLREVLE 17 (38)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHH
Confidence 45667777777654
No 13
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=25.23 E-value=41 Score=21.35 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.7
Q ss_pred EeecCCHHHHHHHHHhC
Q 042252 3 YFHDIPDEVIDNLIEEG 19 (67)
Q Consensus 3 ~F~~l~~~~I~~Yv~~g 19 (67)
.|+.+++++|+.|++.-
T Consensus 186 g~~~l~~~ei~~~l~~~ 202 (219)
T 3h4p_a 186 GVKIFEDEEIEKILDSM 202 (219)
T ss_dssp EEEECCHHHHHHHHHHC
T ss_pred CeEEcCHHHHHHHHHHh
Confidence 37889999999999864
No 14
>2jo4_A KIA7; peptide, oligomer, prebiotic, de novo protein; NMR {Synthetic}
Probab=24.95 E-value=14 Score=16.73 Aligned_cols=9 Identities=33% Similarity=0.349 Sum_probs=6.4
Q ss_pred ccccchhhh
Q 042252 22 FNVAGGLML 30 (67)
Q Consensus 22 ~~kAGgy~I 30 (67)
.-|||||..
T Consensus 15 iikaggy~~ 23 (26)
T 2jo4_A 15 IIKAGGYXX 23 (26)
T ss_pred HHHcCCccc
Confidence 457899864
No 15
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=23.39 E-value=45 Score=16.74 Aligned_cols=14 Identities=29% Similarity=0.169 Sum_probs=9.2
Q ss_pred cHHHHHHHHHHHhh
Q 042252 53 SKALTEKLIWEAQQ 66 (67)
Q Consensus 53 P~~~l~~lL~~~~~ 66 (67)
++..++++|+++++
T Consensus 6 SiDLTFHlLR~mie 19 (40)
T 2rmf_A 6 SIDLTFHLLRTLLE 19 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHH
Confidence 45667777777654
No 16
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=23.02 E-value=64 Score=19.56 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=16.0
Q ss_pred EeecCCHHHHHHHHHhCCc
Q 042252 3 YFHDIPDEVIDNLIEEGIT 21 (67)
Q Consensus 3 ~F~~l~~~~I~~Yv~~g~~ 21 (67)
+|++-+...+++|+++-..
T Consensus 41 ~Fk~Pt~~~YnRyi~t~a~ 59 (114)
T 3fgx_A 41 YFTRPKVSDISRFTKELNS 59 (114)
T ss_dssp EEECCCHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHhc
Confidence 6899999999999987533
No 17
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=22.95 E-value=53 Score=17.02 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=15.5
Q ss_pred cCCcccccHHHHHHHHHHH
Q 042252 46 TDTVMGLSKALTEKLIWEA 64 (67)
Q Consensus 46 ~~nVvGLP~~~l~~lL~~~ 64 (67)
.-|++|++...-.+.|++.
T Consensus 10 VPdv~G~~~~~A~~~L~~~ 28 (71)
T 3ouv_A 10 IPDVAGQTVDVAQKNMNVY 28 (71)
T ss_dssp CCCCTTCBHHHHHHHHHHT
T ss_pred CCCcCCCCHHHHHHHHHHC
Confidence 4589999999988888763
No 18
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.95 E-value=18 Score=18.88 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=11.7
Q ss_pred eecCCHHHHHHHHH
Q 042252 4 FHDIPDEVIDNLIE 17 (67)
Q Consensus 4 F~~l~~~~I~~Yv~ 17 (67)
-|+|+|+++++.+=
T Consensus 19 nrpltDEeLD~~LP 32 (47)
T 2fho_A 19 NRPLSDEELDAMFP 32 (47)
T ss_dssp CCCSCTTHHHHHSC
T ss_pred cCCCCHHHHHHhCC
Confidence 36799999999884
No 19
>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1
Probab=22.66 E-value=35 Score=22.01 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=20.2
Q ss_pred CCcccccchhhhhcCCcccceeeeecccC
Q 042252 19 GITFNVAGGLMLEHPLTLPFVEAVVGATD 47 (67)
Q Consensus 19 g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~ 47 (67)
.+.+.|+|+|-|-- .+..-+..|-.|.+
T Consensus 2 ~~~~~k~~~~~~~~-~a~~~~~~~~~d~~ 29 (170)
T 1ydu_A 2 DQIFNKVGSYWLGQ-KANKQFDSVGNDLN 29 (170)
T ss_dssp CCCCCCCCCCCCCC-CCCCCCCCCCCCCC
T ss_pred hhHhhhhhhhhHhH-HHHHhhhhhhhhHh
Confidence 45788999998877 67777777666543
No 20
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=22.37 E-value=89 Score=17.67 Aligned_cols=48 Identities=15% Similarity=0.094 Sum_probs=29.9
Q ss_pred HHHHHHhCCcccccchhhhhcCCcccceeeeec--ccCCcccccHHHHHHHHHHHh
Q 042252 12 IDNLIEEGITFNVAGGLMLEHPLTLPFVEAVVG--ATDTVMGLSKALTEKLIWEAQ 65 (67)
Q Consensus 12 I~~Yv~~g~~~~kAGgy~Iq~~~~~~~v~~I~G--~~~nVvGLP~~~l~~lL~~~~ 65 (67)
|...+-.. |-=..-||.|.+|.-..+.-+|.= +++ |...+.+.+.+++
T Consensus 28 Lr~~L~~~-p~V~fagY~vpHPl~~~~~lrIqT~~~~~-----p~~al~~a~~~l~ 77 (92)
T 2pa8_L 28 IAGTLRRI-SGVSFASYYQPHPLSDKIIVKILTDGSIT-----PKDALLKAIENIR 77 (92)
T ss_dssp HHHHHHTS-TTEEEEEEECSSTTSCCEEEEEEECSSSC-----HHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCeeEEEeecCCCCCCceEEEEEECCCCC-----HHHHHHHHHHHHH
Confidence 33444433 333344899999877777777763 332 7777777776554
No 21
>2e6x_A TT1592, hypothetical protein TTHA1281; unknown function protein, NPPSFA, national project on protei structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=22.31 E-value=58 Score=18.08 Aligned_cols=17 Identities=24% Similarity=0.640 Sum_probs=14.6
Q ss_pred eecCCHHHHHHHHHhCC
Q 042252 4 FHDIPDEVIDNLIEEGI 20 (67)
Q Consensus 4 F~~l~~~~I~~Yv~~g~ 20 (67)
.++.+|+++++-++.|.
T Consensus 45 Lrnv~daeve~~~~~G~ 61 (69)
T 2e6x_A 45 LLNLPEAEMRRLVQEGR 61 (69)
T ss_dssp CBCCCHHHHHHHHHTTC
T ss_pred hccCCHHHHHHHHHcCc
Confidence 47889999999998874
No 22
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=21.59 E-value=35 Score=17.56 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=9.6
Q ss_pred ecCCHHHHHHHHH
Q 042252 5 HDIPDEVIDNLIE 17 (67)
Q Consensus 5 ~~l~~~~I~~Yv~ 17 (67)
..|++++|++.++
T Consensus 63 ~~Ls~~ei~~l~~ 75 (81)
T 1a56_A 63 VNVSDADAKALAD 75 (81)
T ss_dssp CSSSSHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4688888887654
No 23
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=21.26 E-value=48 Score=19.16 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=26.2
Q ss_pred CCcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHH
Q 042252 19 GITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWE 63 (67)
Q Consensus 19 g~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~ 63 (67)
+.+-++|||...-+ .|-+|+|. +|-++....+.++|+.
T Consensus 67 gs~A~~aggL~~GD-----~Il~Vng~--~v~~~~~~~~~~~l~~ 104 (130)
T 1i16_A 67 GAASEQSETVQPGD-----EILQLGGT--AMQGLTRFEAWNIIKA 104 (130)
T ss_dssp SCCCSSSCCCCTTC-----CEEECSSC--BGGGSCHHHHHHHHHT
T ss_pred CCHHHHcCCCCCCC-----EEEEECCE--ECCCCCHHHHHHHHHh
Confidence 45667777775433 47788885 5677788888877764
No 24
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=21.25 E-value=40 Score=20.39 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=22.7
Q ss_pred cccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHHh
Q 042252 21 TFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEAQ 65 (67)
Q Consensus 21 ~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~~ 65 (67)
+-.+.||+.|....|.. .++-++++-+=.=...+...+.+.+
T Consensus 155 ~~~~~GG~~i~~~~G~i---~id~tl~~rl~~~~~~l~~~i~~~L 196 (198)
T 2dm9_A 155 TVDTMGGVIVETEDGRI---RIDNTFEARMERFEGEIRSTIAKVL 196 (198)
T ss_dssp CCCCSSEEEEEETTSSC---EEEEEHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCccCceEEEeCCCCE---EEECcHHHHHHHHHHHhHHHHHHHh
Confidence 56778888887743432 4565665544443444444444433
No 25
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=20.45 E-value=64 Score=18.07 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=34.4
Q ss_pred eecCCHHHHHHHHHhC-CcccccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHH
Q 042252 4 FHDIPDEVIDNLIEEG-ITFNVAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWE 63 (67)
Q Consensus 4 F~~l~~~~I~~Yv~~g-~~~~kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~ 63 (67)
+..++.+++..|+.+- ..-..|-.|.-+...|..|..==+-|.-.-+|+++..-.++++.
T Consensus 14 v~~Ws~edV~~wL~~l~gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgIklG~r~kI~~~ 74 (89)
T 1kw4_A 14 ISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAK 74 (89)
T ss_dssp GGGCCHHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHHH
T ss_pred chhCCHHHHHHHHHHCcChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCCCHHHHHHHHHH
Confidence 3568899999999875 22244455554543333333321224435689987765555543
No 26
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=20.45 E-value=1.1e+02 Score=18.23 Aligned_cols=38 Identities=8% Similarity=0.021 Sum_probs=27.5
Q ss_pred ccchhhhhcCCcccceeeeecccCCcccccHHHHHHHHHHHh
Q 042252 24 VAGGLMLEHPLTLPFVEAVVGATDTVMGLSKALTEKLIWEAQ 65 (67)
Q Consensus 24 kAGgy~Iq~~~~~~~v~~I~G~~~nVvGLP~~~l~~lL~~~~ 65 (67)
..=||.|.+|.-..+.-+|.=+- ++ |...+.+.+.+++
T Consensus 49 ~fAgY~vpHPle~~~~lrIqT~~-~~---p~eaL~~al~~L~ 86 (115)
T 1xpp_A 49 DEARYYIKHPVIDNPQIYVRVKS-GK---PQSAIKRAVRKLS 86 (115)
T ss_dssp EEEEEECSSTTTSCCEEEEEESS-SC---HHHHHHHHHHHHH
T ss_pred EEEEeecCCCCCCccEEEEEeCC-CC---hHHHHHHHHHHHH
Confidence 34489999987787888887432 22 9888888877654
Done!