BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042254
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S8A0|GDU4_ARATH Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana GN=GDU4 PE=2
SV=1
Length = 156
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 88/129 (68%), Gaps = 11/129 (8%)
Query: 28 SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIESGDK-GQEGDAANSVK-- 84
SPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LS S D +SG++ +E ++ + VK
Sbjct: 31 SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSTSGD-DSGERVDEEKESRSGVKAA 89
Query: 85 --VYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQGENFEIGEKVKEVTDHE 142
EEK+LVIMAGD+ P FLATP K +G+ + E G IG +++ D E
Sbjct: 90 SAACEEKVLVIMAGDDLPRFLATPAANKCMCGHEGRMVIFKEDG----IGAGEEKMGDRE 145
Query: 143 DNHRENQET 151
+EN+ET
Sbjct: 146 -KAKENEET 153
>sp|Q9SW07|GDU2_ARATH Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana GN=GDU2 PE=2
SV=1
Length = 129
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 73/114 (64%), Gaps = 7/114 (6%)
Query: 16 AITKATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSDS--RDIESGDK 73
+I ++ SPWHSPVPYLFGGLAAML LI ALLILACSYW+LS S RD+E+GD
Sbjct: 14 SINASSSMVVPHSPWHSPVPYLFGGLAAMLALICVALLILACSYWRLSGSAERDLEAGDD 73
Query: 74 GQEGDAANSVKVYE--EKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQ 125
+ + N K E EK LVIMAGD +PT+LATP S G D NE+
Sbjct: 74 AKPDNDTNKTKHTEMPEKFLVIMAGDVRPTYLATPATRSEQSCTCG---DHNEE 124
>sp|O81775|GDU1_ARATH Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana GN=GDU1 PE=1
SV=1
Length = 158
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 68/90 (75%), Gaps = 8/90 (8%)
Query: 27 RSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS-----DSRDIESGDKGQEGD-AA 80
+SPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LS D ++++ + + GD AA
Sbjct: 27 QSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSSSGEEDGQNVDEEKESRSGDKAA 86
Query: 81 NSVKVYEEKILVIMAGDEKPTFLATPVCTK 110
N YEEK LVIMAG++ P +LATP K
Sbjct: 87 NG--AYEEKFLVIMAGEDLPRYLATPAMKK 114
>sp|Q9FHH5|GDU3_ARATH Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana GN=GDU3 PE=2
SV=1
Length = 148
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 68/104 (65%), Gaps = 14/104 (13%)
Query: 19 KATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSD----------SRDI 68
+ T+ SPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LS RD+
Sbjct: 17 RTTMGGGPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGYLDGEENQSRERDL 76
Query: 69 ESGDKGQEGDAANSVKVYEEKILVIMAGDEKPTFLATP---VCT 109
E GD + A V + EK LVIMAG+ KPT+LATP CT
Sbjct: 77 EVGDVKPDKTAVKPVAL-PEKFLVIMAGNVKPTYLATPSVKTCT 119
>sp|Q3E965|GDU5_ARATH Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana GN=GDU5 PE=2
SV=2
Length = 131
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 82/124 (66%), Gaps = 12/124 (9%)
Query: 22 VATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIESGDKGQEGDAAN 81
V +Q RSPW +PVPYLFGGLAAMLGLIAFALL+LACSYW+L SR E +K E
Sbjct: 20 VESQTRSPWRTPVPYLFGGLAAMLGLIAFALLLLACSYWRL--SRQTEDEEKQTESGEKV 77
Query: 82 SVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQGENFEIGEKVKEVTDH 141
K +EEKILVIMAG PTFLATPV K +D ++K E G+N E +VT
Sbjct: 78 VAKAFEEKILVIMAGQNNPTFLATPVAAKIC--LDCVNMEKKE-GQNGE-----SKVT-- 127
Query: 142 EDNH 145
E+NH
Sbjct: 128 EENH 131
>sp|Q3EAV6|GDU6_ARATH Protein GLUTAMINE DUMPER 6 OS=Arabidopsis thaliana GN=GDU6 PE=2
SV=1
Length = 111
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 30 WHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSDSRD---IESGDKGQEGDAANSVKVY 86
W SPVPYLFGGL ++ LIA ALL L C++ K S S + ++ D + DA + Y
Sbjct: 10 WKSPVPYLFGGLFLLVLLIALALLSLVCTHQKPSSSSNNNHMDEEDDVGDKDAKPITREY 69
Query: 87 EEKILVIMAGDEKPTFLA 104
KI+VI+AGD KPT LA
Sbjct: 70 LPKIVVILAGDNKPTCLA 87
>sp|Q3E8L0|GDU7_ARATH Protein GLUTAMINE DUMPER 7 OS=Arabidopsis thaliana GN=GDU7 PE=2
SV=1
Length = 97
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 32 SPVPYLFGGLAAMLGLIAFALLILA--CSYWKLSDSRDIESGDKGQEGDAANSVKVYEEK 89
SP+ MLGL A +L +A C + + S+S E K Q + E K
Sbjct: 20 SPILSKICAWGVMLGLFALSLFAMAYACYHKQTSNSCIEEKQGKKQVLKPLD----MEPK 75
Query: 90 ILVIMAGDEKPTFLATP 106
I+VIMAG+E PTF A P
Sbjct: 76 IVVIMAGNENPTFFAKP 92
>sp|A3DN07|TFE_STAMF Transcription factor E OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=tfe PE=3 SV=1
Length = 156
Score = 35.8 bits (81), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 76 EGDAANSVKVYEEKILVIMAGDEKPTFLATPVCTKPSSF-----------VDGKQIDKNE 124
EG +K EK+L+ + ++ TFL P+C + +F DG+Q+ + +
Sbjct: 72 EGILIARLKKTREKLLIRLNYEKNNTFLKCPLCGRRYTFDEAFENDFLCPYDGEQLIEYD 131
Query: 125 QGENFEI-GEKVKEVTD 140
E I EK+KE+TD
Sbjct: 132 NSEEIRILEEKIKEITD 148
>sp|B1XJK0|MTNA_SYNP2 Methylthioribose-1-phosphate isomerase OS=Synechococcus sp. (strain
ATCC 27264 / PCC 7002 / PR-6) GN=mtnA PE=3 SV=2
Length = 346
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 77 GDAANSVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQG--ENFEIGE 133
GDAAN + Y + ++ P F+A P+ T S DGKQI E+ E ++IG+
Sbjct: 247 GDAANKIGTY--SLAIVAKAHNVPFFVAAPLSTVDFSLSDGKQIPIEERDPKEVYQIGD 303
>sp|Q3M785|MTNA_ANAVT Methylthioribose-1-phosphate isomerase OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=mtnA PE=3 SV=1
Length = 347
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 57 CSYWKLSDSRDIESGDKGQEGDAANSVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFVD 116
C L D+ + + GDAAN + Y + ++ P F+A PV T D
Sbjct: 224 CMKQGLIDAVVVGADRIAANGDAANKIGTY--SLAIVAKAHNVPFFVAAPVSTIDFELTD 281
Query: 117 GKQIDKNEQG--ENFEIGE 133
G QI E+ E +++G+
Sbjct: 282 GSQIPIEERNPVEIYQVGD 300
>sp|Q8YR82|MTNA_NOSS1 Methylthioribose-1-phosphate isomerase OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=mtnA PE=3 SV=1
Length = 347
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 77 GDAANSVKVYEEKILVIMAGDEKPTFLATPVCTKPSSFVDGKQIDKNEQG--ENFEIGE 133
GDAAN + Y + ++ P F+A PV T DG QI E+ E +++G+
Sbjct: 244 GDAANKIGTY--SLAIVAKAHNVPFFVAAPVSTIDFELADGSQIPIEERNPVEIYQVGD 300
>sp|Q8U1S0|HTPX_PYRFU Protease HtpX homolog OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=htpX PE=3 SV=1
Length = 289
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 34 VPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIE--SGDKGQEGDAANSVKVYEEKIL 91
+ YL GG M+ AL + SYW SDS + + E +A ++ E+ L
Sbjct: 23 IGYLIGGQGGMIIAFTIALFMNFFSYW-FSDSIVLSWYNARIVSEEEAPELHRIVEK--L 79
Query: 92 VIMAGDEKPTFLATPVCTKPSSFVDGKQ-----IDKNEQGENFEIGEKVKEVTDHEDNHR 146
+ AG KP P P++F G+ + E ++++ V HE +H
Sbjct: 80 AMQAGIPKPRVAIVPTLV-PNAFATGRSPEHAVVAVTEGLLRILNRDELEGVIAHEISHI 138
Query: 147 ENQET 151
+N++T
Sbjct: 139 KNRDT 143
>sp|Q9FHX3|LRKS6_ARATH L-type lectin-domain containing receptor kinase S.6 OS=Arabidopsis
thaliana GN=LECRKS6 PE=2 SV=1
Length = 691
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 33 PVPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIESG 71
PV L GLAA++ L+AF + L C ++S+ D SG
Sbjct: 308 PVWSLLPGLAAIVILVAFIVFSLICGKKRISEEADSNSG 346
>sp|Q8G6J6|YIDC_BIFLO Membrane protein insertase YidC OS=Bifidobacterium longum (strain
NCC 2705) GN=yidC PE=3 SV=1
Length = 335
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 13 AAAAITKATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYW 60
AAA++ K T Q+ W PV Y+F G+A + FA+L+ YW
Sbjct: 216 AAASMNKQTETMQKAMLWLFPVMYIFSGVA-----MPFAVLV----YW 254
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,939,019
Number of Sequences: 539616
Number of extensions: 2424755
Number of successful extensions: 5369
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5352
Number of HSP's gapped (non-prelim): 22
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)