Query 042254
Match_columns 159
No_of_seqs 98 out of 100
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 04:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07204 Orthoreo_P10: Orthore 88.8 0.26 5.7E-06 37.8 1.7 37 28-64 36-72 (98)
2 PF01102 Glycophorin_A: Glycop 85.8 1 2.2E-05 35.2 3.5 34 28-62 59-92 (122)
3 TIGR00847 ccoS cytochrome oxid 82.5 3.1 6.7E-05 28.3 4.3 34 34-70 3-36 (51)
4 PF02439 Adeno_E3_CR2: Adenovi 80.6 3.5 7.5E-05 26.9 3.8 28 37-64 8-35 (38)
5 PF03597 CcoS: Cytochrome oxid 79.5 4.6 0.0001 26.7 4.2 34 34-70 2-35 (45)
6 PF15347 PAG: Phosphoprotein a 70.9 3.3 7.1E-05 38.6 2.5 24 36-59 16-39 (428)
7 PRK13592 ubiA prenyltransferas 66.4 7 0.00015 34.7 3.5 28 31-58 232-260 (299)
8 PF12273 RCR: Chitin synthesis 64.8 6.4 0.00014 29.7 2.6 11 97-107 61-71 (130)
9 PF05283 MGC-24: Multi-glycosy 64.7 6.5 0.00014 32.8 2.8 22 34-55 160-181 (186)
10 PF11174 DUF2970: Protein of u 63.7 11 0.00025 25.8 3.4 19 31-49 28-46 (56)
11 TIGR00822 EII-Sor PTS system, 57.9 27 0.00059 30.4 5.5 27 33-59 205-235 (265)
12 PHA03283 envelope glycoprotein 57.9 12 0.00026 36.1 3.6 31 28-60 393-425 (542)
13 PF05151 PsbM: Photosystem II 57.1 8.8 0.00019 24.1 1.8 14 45-58 6-19 (31)
14 PF10215 Ost4: Oligosaccaryltr 55.9 18 0.0004 23.0 3.1 18 38-55 7-24 (35)
15 PF09928 DUF2160: Predicted sm 55.5 12 0.00027 28.2 2.7 22 29-50 3-24 (88)
16 PRK13726 conjugal transfer pil 55.2 38 0.00081 28.0 5.7 34 31-64 7-43 (188)
17 PHA02909 hypothetical protein; 54.7 13 0.00029 26.8 2.6 9 52-60 49-57 (72)
18 PF13295 DUF4077: Domain of un 52.9 5.4 0.00012 32.7 0.4 29 34-62 112-140 (175)
19 PF12911 OppC_N: N-terminal TM 52.8 15 0.00033 23.5 2.5 15 43-57 18-32 (56)
20 PF14991 MLANA: Protein melan- 52.7 2.4 5.1E-05 33.6 -1.6 21 46-66 33-54 (118)
21 PF02480 Herpes_gE: Alphaherpe 52.6 4.6 0.0001 37.1 0.0 36 26-61 343-379 (439)
22 PRK14094 psbM photosystem II r 51.9 21 0.00045 24.6 3.1 15 44-58 5-19 (50)
23 PF12273 RCR: Chitin synthesis 51.7 7 0.00015 29.5 0.9 12 46-57 10-21 (130)
24 PF15339 Afaf: Acrosome format 51.5 19 0.00041 30.7 3.5 23 36-58 131-153 (200)
25 PF01998 DUF131: Protein of un 49.1 7 0.00015 27.6 0.5 24 33-56 33-59 (64)
26 PF05399 EVI2A: Ectropic viral 48.5 17 0.00036 31.6 2.7 19 41-59 128-146 (227)
27 TIGR03007 pepcterm_ChnLen poly 46.7 44 0.00096 29.8 5.2 38 25-63 404-441 (498)
28 PF14241 DUF4341: Domain of un 46.6 30 0.00065 23.7 3.3 22 32-55 1-22 (62)
29 PF01299 Lamp: Lysosome-associ 46.2 17 0.00036 31.1 2.4 29 34-64 273-301 (306)
30 PRK09757 PTS system N-acetylga 45.8 27 0.00058 30.3 3.6 28 33-60 206-238 (267)
31 PRK15065 PTS system mannose-sp 44.2 55 0.0012 28.5 5.3 27 33-59 206-236 (262)
32 PRK05419 putative sulfite oxid 43.7 28 0.0006 28.8 3.2 30 33-62 113-142 (205)
33 PF14575 EphA2_TM: Ephrin type 43.4 23 0.00051 25.1 2.4 23 40-62 6-28 (75)
34 PF02480 Herpes_gE: Alphaherpe 42.8 8.1 0.00018 35.6 0.0 45 20-64 341-385 (439)
35 PF04277 OAD_gamma: Oxaloaceta 42.6 21 0.00046 24.4 2.1 11 85-95 61-71 (79)
36 COG3197 FixS Uncharacterized p 42.5 33 0.00072 24.2 3.0 33 35-70 4-36 (58)
37 CHL00080 psbM photosystem II p 42.3 25 0.00055 22.5 2.2 15 44-58 5-19 (34)
38 PF15048 OSTbeta: Organic solu 41.4 35 0.00076 27.3 3.4 28 27-58 32-59 (125)
39 PF09049 SNN_transmemb: Stanni 41.1 82 0.0018 20.0 4.3 27 31-60 6-33 (33)
40 PRK12785 fliL flagellar basal 40.3 33 0.00071 27.3 3.1 22 85-107 70-93 (166)
41 TIGR03038 PS_II_psbM photosyst 40.1 29 0.00062 22.1 2.2 13 44-56 5-17 (33)
42 COG4961 TadG Flp pilus assembl 39.8 29 0.00063 27.7 2.7 20 39-58 21-40 (185)
43 PF05568 ASFV_J13L: African sw 39.1 40 0.00088 28.3 3.5 23 41-63 36-58 (189)
44 PF10883 DUF2681: Protein of u 39.0 29 0.00063 25.9 2.4 21 43-63 6-26 (87)
45 PF06596 PsbX: Photosystem II 37.5 56 0.0012 21.4 3.3 20 37-56 12-31 (39)
46 COG4736 CcoQ Cbb3-type cytochr 37.5 55 0.0012 23.0 3.5 27 37-63 5-31 (60)
47 PF11980 DUF3481: Domain of un 37.1 38 0.00083 25.7 2.8 25 36-60 18-43 (87)
48 PRK04989 psbM photosystem II r 37.0 34 0.00073 22.1 2.1 15 44-58 5-19 (35)
49 PF15330 SIT: SHP2-interacting 36.8 48 0.001 25.3 3.4 27 37-63 2-28 (107)
50 PF03916 NrfD: Polysulphide re 36.8 40 0.00086 28.4 3.2 23 25-47 165-188 (313)
51 PF13807 GNVR: G-rich domain o 36.7 65 0.0014 22.3 3.8 20 31-50 54-73 (82)
52 PF05255 UPF0220: Uncharacteri 36.0 44 0.00095 27.2 3.2 28 35-62 101-128 (166)
53 COG3190 FliO Flagellar biogene 35.3 93 0.002 25.1 4.9 61 32-98 22-82 (137)
54 PLN00085 photosystem II reacti 34.8 44 0.00096 27.2 3.0 22 44-65 82-109 (149)
55 COG5416 Uncharacterized integr 33.9 58 0.0013 25.2 3.4 35 21-55 48-82 (98)
56 cd02435 CCC1 CCC1. CCC1: This 33.6 59 0.0013 27.6 3.8 30 34-63 173-207 (241)
57 PF14914 LRRC37AB_C: LRRC37A/B 32.6 52 0.0011 27.2 3.2 23 42-64 129-151 (154)
58 PF04976 DmsC: DMSO reductase 32.3 62 0.0013 27.4 3.7 28 25-52 140-168 (276)
59 TIGR02976 phageshock_pspB phag 31.6 60 0.0013 23.5 3.0 28 36-63 3-30 (75)
60 PF11143 DUF2919: Protein of u 31.4 48 0.001 26.5 2.7 23 40-63 57-79 (149)
61 PF04133 Vps55: Vacuolar prote 31.1 50 0.0011 25.6 2.7 19 44-62 6-24 (120)
62 PF06103 DUF948: Bacterial pro 30.7 45 0.00098 23.4 2.2 12 47-58 5-16 (90)
63 PF06667 PspB: Phage shock pro 30.5 64 0.0014 23.4 3.0 27 36-62 3-29 (75)
64 PF01794 Ferric_reduct: Ferric 30.4 95 0.0021 21.6 3.8 27 33-59 76-102 (125)
65 PF13903 Claudin_2: PMP-22/EMP 29.9 81 0.0018 23.0 3.6 24 37-60 73-96 (172)
66 PTZ00370 STEVOR; Provisional 29.8 53 0.0012 29.6 3.0 24 39-62 258-282 (296)
67 cd01324 cbb3_Oxidase_CcoQ Cyto 29.8 1.2E+02 0.0026 20.0 4.0 28 37-64 6-36 (48)
68 PF15240 Pro-rich: Proline-ric 29.6 35 0.00077 28.6 1.8 13 44-56 2-14 (179)
69 PF04478 Mid2: Mid2 like cell 29.5 19 0.00041 29.6 0.1 26 40-65 57-82 (154)
70 PF03229 Alpha_GJ: Alphavirus 28.7 96 0.0021 24.9 4.0 37 26-62 73-116 (126)
71 PF09680 Tiny_TM_bacill: Prote 28.5 38 0.00082 20.3 1.3 20 40-60 5-24 (24)
72 PF03381 CDC50: LEM3 (ligand-e 28.2 1E+02 0.0022 26.5 4.4 35 28-62 239-273 (278)
73 PHA00736 hypothetical protein 28.0 51 0.0011 24.3 2.2 14 37-50 57-70 (79)
74 PRK13823 conjugal transfer pro 27.8 48 0.001 24.9 2.1 18 35-52 15-36 (94)
75 cd01059 CCC1_like CCC1-related 27.7 97 0.0021 23.8 3.8 30 34-63 79-114 (143)
76 PF13908 Shisa: Wnt and FGF in 27.5 27 0.00058 27.5 0.7 6 31-36 70-75 (179)
77 PF06814 Lung_7-TM_R: Lung sev 27.2 96 0.0021 26.1 4.0 36 28-63 41-76 (295)
78 PF01594 UPF0118: Domain of un 27.0 89 0.0019 25.7 3.7 26 36-61 302-327 (327)
79 PRK10081 entericidin B membran 26.7 75 0.0016 21.6 2.6 21 41-61 6-26 (48)
80 TIGR03054 photo_alph_chp1 puta 26.7 59 0.0013 26.0 2.5 23 40-62 3-25 (135)
81 PRK10884 SH3 domain-containing 26.7 55 0.0012 27.3 2.4 18 36-54 174-191 (206)
82 KOG1053 Glutamate-gated NMDA-t 26.3 59 0.0013 34.0 2.9 26 38-63 826-855 (1258)
83 PRK12361 hypothetical protein; 26.3 84 0.0018 28.9 3.7 14 48-61 37-50 (547)
84 PF10826 DUF2551: Protein of u 26.1 50 0.0011 24.8 1.8 20 38-57 43-62 (83)
85 PF05454 DAG1: Dystroglycan (D 25.7 23 0.0005 31.4 0.0 11 89-100 209-219 (290)
86 PF06800 Sugar_transport: Suga 25.4 89 0.0019 27.4 3.5 33 26-62 93-125 (269)
87 PRK13792 lysozyme inhibitor; P 25.3 37 0.0008 26.8 1.1 21 42-62 4-24 (127)
88 KOG0499 Cyclic nucleotide-gate 25.3 71 0.0015 32.1 3.2 25 31-55 425-449 (815)
89 PRK09458 pspB phage shock prot 25.1 90 0.0019 23.0 3.0 27 36-62 3-29 (75)
90 PF01431 Peptidase_M13: Peptid 24.9 63 0.0014 25.3 2.3 23 25-47 20-42 (206)
91 PRK07021 fliL flagellar basal 24.8 2.6E+02 0.0056 21.9 5.8 22 85-107 63-85 (162)
92 PRK05696 fliL flagellar basal 24.1 2.9E+02 0.0063 21.8 5.9 22 86-107 72-93 (170)
93 PF11353 DUF3153: Protein of u 24.0 79 0.0017 25.7 2.8 7 25-31 177-183 (209)
94 PF06716 DUF1201: Protein of u 23.8 1.2E+02 0.0027 21.0 3.3 28 35-62 7-34 (54)
95 PF07937 DUF1686: Protein of u 23.7 63 0.0014 27.4 2.2 18 44-61 129-146 (185)
96 TIGR03750 conj_TIGR03750 conju 23.7 1.1E+02 0.0025 23.6 3.5 29 32-60 39-69 (111)
97 cd02434 Nodulin-21_like_3 Nodu 23.6 94 0.002 25.9 3.3 23 41-63 172-195 (225)
98 COG1704 LemA Uncharacterized c 23.5 67 0.0015 27.1 2.3 24 41-64 4-27 (185)
99 PRK11486 flagellar biosynthesi 23.4 1.3E+02 0.0028 23.7 3.8 56 43-98 21-76 (124)
100 PF11677 DUF3273: Protein of u 23.4 1.7E+02 0.0037 26.0 4.9 39 25-63 6-46 (265)
101 PF15345 TMEM51: Transmembrane 23.4 44 0.00094 29.2 1.3 30 27-56 53-82 (233)
102 cd02437 CCC1_like_1 CCC1-relat 23.3 1.2E+02 0.0027 24.0 3.7 16 48-63 131-146 (175)
103 TIGR03363 VI_chp_8 type VI sec 23.2 40 0.00086 29.7 1.0 9 31-39 313-321 (353)
104 TIGR01167 LPXTG_anchor LPXTG-m 23.1 1.2E+02 0.0026 17.5 2.8 7 35-41 12-18 (34)
105 PF02411 MerT: MerT mercuric t 22.9 1E+02 0.0022 23.8 3.1 17 47-63 54-70 (116)
106 PF07589 VPEP: PEP-CTERM motif 22.8 1E+02 0.0023 17.8 2.4 11 47-57 10-20 (25)
107 PF00822 PMP22_Claudin: PMP-22 22.7 1.1E+02 0.0025 22.6 3.3 29 37-65 3-33 (166)
108 PF11153 DUF2931: Protein of u 22.4 70 0.0015 25.9 2.2 18 46-63 5-22 (216)
109 PF06305 DUF1049: Protein of u 22.3 1E+02 0.0022 20.2 2.6 33 22-54 6-39 (68)
110 PF05915 DUF872: Eukaryotic pr 22.3 1.5E+02 0.0032 22.8 3.8 27 34-60 39-65 (115)
111 PRK13415 flagella biosynthesis 22.3 1.6E+02 0.0035 25.4 4.5 23 24-48 60-82 (219)
112 PHA02337 putative high light i 22.3 1.9E+02 0.0041 18.5 3.7 23 33-56 3-25 (35)
113 PF12606 RELT: Tumour necrosis 22.2 2.3E+02 0.005 19.2 4.3 22 46-67 10-31 (50)
114 TIGR02830 spore_III_AG stage I 22.0 77 0.0017 26.4 2.4 18 42-59 6-23 (186)
115 PF01490 Aa_trans: Transmembra 22.0 1.1E+02 0.0023 25.7 3.3 25 34-58 24-48 (409)
116 COG4594 FecB ABC-type Fe3+-cit 21.7 1.5E+02 0.0033 26.9 4.3 20 41-60 6-25 (310)
117 PF06779 DUF1228: Protein of u 21.4 1.6E+02 0.0035 21.5 3.7 15 45-59 62-76 (85)
118 PF03904 DUF334: Domain of unk 21.0 1.1E+02 0.0025 26.6 3.3 23 34-56 147-170 (230)
119 PF01102 Glycophorin_A: Glycop 20.9 1.6E+02 0.0034 23.1 3.8 30 36-65 69-98 (122)
120 PF10577 UPF0560: Uncharacteri 20.8 1.2E+02 0.0026 30.9 3.8 25 34-58 272-296 (807)
121 PF03345 DDOST_48kD: Oligosacc 20.8 41 0.00089 31.2 0.6 28 29-56 382-409 (423)
122 PHA03231 glycoprotein BALF4; P 20.8 80 0.0017 32.0 2.6 36 21-60 691-726 (829)
123 PF08693 SKG6: Transmembrane a 20.8 77 0.0017 20.8 1.7 17 45-61 21-37 (40)
124 PF04961 FTCD_C: Formiminotran 20.7 1.2E+02 0.0026 24.6 3.2 22 39-60 20-41 (184)
125 PF13623 SurA_N_2: SurA N-term 20.7 89 0.0019 24.6 2.4 17 43-59 10-26 (145)
126 COG5042 NUP Purine nucleoside 20.5 52 0.0011 30.2 1.2 24 37-60 13-36 (349)
127 PF11239 DUF3040: Protein of u 20.3 2.5E+02 0.0054 19.7 4.4 24 26-49 32-55 (82)
128 PF06387 Calcyon: D1 dopamine 20.3 73 0.0016 27.1 2.0 14 45-58 85-98 (186)
129 PF04964 Flp_Fap: Flp/Fap pili 20.1 92 0.002 20.2 2.0 14 42-55 14-27 (46)
No 1
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=88.80 E-value=0.26 Score=37.80 Aligned_cols=37 Identities=32% Similarity=0.315 Sum_probs=31.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 042254 28 SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSD 64 (159)
Q Consensus 28 s~W~SPvPYLFgGLA~MLgLIAvALLILACSy~K~ss 64 (159)
+..-+=.|||-+|=+++|.||-++|+.-.|.+||.+.
T Consensus 36 S~~~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K~~~ 72 (98)
T PF07204_consen 36 SSFVAYWPYLAAGGGLILILIIIALVCCCRAKHKTSA 72 (98)
T ss_pred ehHHhhhHHhhccchhhhHHHHHHHHHHhhhhhhhHh
Confidence 5566678999999999999999998888888888654
No 2
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=85.83 E-value=1 Score=35.23 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=24.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042254 28 SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 28 s~W~SPvPYLFgGLA~MLgLIAvALLILACSy~K~ 62 (159)
.....|. .....|++|.|+|++.|||+-|-+|+.
T Consensus 59 h~fs~~~-i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 59 HRFSEPA-IIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp SSSS-TC-HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCccccc-eeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555565 455678999999999999988887643
No 3
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=82.52 E-value=3.1 Score=28.33 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 042254 34 VPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIES 70 (159)
Q Consensus 34 vPYLFgGLA~MLgLIAvALLILACSy~K~ss~~d~e~ 70 (159)
+-|+..+++++||+|+++.++.+ -|+..++|.|+
T Consensus 3 il~~LIpiSl~l~~~~l~~f~Wa---vk~GQfDDle~ 36 (51)
T TIGR00847 3 ILTILIPISLLLGGVGLVAFLWS---LKSGQYDDLKG 36 (51)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HccCCCCCCcc
Confidence 45888899999888887766655 24445555554
No 4
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=80.64 E-value=3.5 Score=26.93 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 042254 37 LFGGLAAMLGLIAFALLILACSYWKLSD 64 (159)
Q Consensus 37 LFgGLA~MLgLIAvALLILACSy~K~ss 64 (159)
..+|..+-|.+|.+..++-+|-|+|...
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcykk~~~ 35 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYKKHRR 35 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 4567777888889999999999999654
No 5
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=79.53 E-value=4.6 Score=26.68 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 042254 34 VPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIES 70 (159)
Q Consensus 34 vPYLFgGLA~MLgLIAvALLILACSy~K~ss~~d~e~ 70 (159)
+-|+..+++++||+++++.++.+ - |+..++|.|+
T Consensus 2 ~l~~lip~sl~l~~~~l~~f~Wa--v-k~GQfdD~e~ 35 (45)
T PF03597_consen 2 ILYILIPVSLILGLIALAAFLWA--V-KSGQFDDLEG 35 (45)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH--H-ccCCCCCCcc
Confidence 35788888888888777666654 2 3344445544
No 6
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=70.89 E-value=3.3 Score=38.63 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 042254 36 YLFGGLAAMLGLIAFALLILACSY 59 (159)
Q Consensus 36 YLFgGLA~MLgLIAvALLILACSy 59 (159)
-|.|+||++-.++-|.+|||.||-
T Consensus 16 vlwgsLaav~~f~lis~LifLCsS 39 (428)
T PF15347_consen 16 VLWGSLAAVTTFLLISFLIFLCSS 39 (428)
T ss_pred EeehHHHHHHHHHHHHHHHHHhhc
Confidence 366899999999999999999994
No 7
>PRK13592 ubiA prenyltransferase; Provisional
Probab=66.36 E-value=7 Score=34.75 Aligned_cols=28 Identities=0% Similarity=0.019 Sum_probs=22.8
Q ss_pred CCChhHH-HHHHHHHHHHHHHHHHHHHhh
Q 042254 31 HSPVPYL-FGGLAAMLGLIAFALLILACS 58 (159)
Q Consensus 31 ~SPvPYL-FgGLA~MLgLIAvALLILACS 58 (159)
-||+||+ +|.++..+.+++.++++++|.
T Consensus 232 ~s~lp~~~~g~~g~~~l~~~~~~~l~~~~ 260 (299)
T PRK13592 232 TNFALLWNISHVGVVVLVLNVIWMTVQFE 260 (299)
T ss_pred HhhHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3789999 887777777788888888886
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=64.78 E-value=6.4 Score=29.75 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=5.4
Q ss_pred CCCCccccccC
Q 042254 97 DEKPTFLATPV 107 (159)
Q Consensus 97 De~PTfLA~P~ 107 (159)
+--|.|=.++.
T Consensus 61 ~~~P~y~~~~~ 71 (130)
T PF12273_consen 61 DYVPPYTETAN 71 (130)
T ss_pred CCCCCCCCCCC
Confidence 44555555444
No 9
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=64.73 E-value=6.5 Score=32.80 Aligned_cols=22 Identities=23% Similarity=0.612 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 042254 34 VPYLFGGLAAMLGLIAFALLIL 55 (159)
Q Consensus 34 vPYLFgGLA~MLgLIAvALLIL 55 (159)
..-+|||+.+.|||+||.+.++
T Consensus 160 ~~SFiGGIVL~LGv~aI~ff~~ 181 (186)
T PF05283_consen 160 AASFIGGIVLTLGVLAIIFFLY 181 (186)
T ss_pred hhhhhhHHHHHHHHHHHHHHHh
Confidence 3568999999999999988764
No 10
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=63.73 E-value=11 Score=25.81 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=14.2
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 042254 31 HSPVPYLFGGLAAMLGLIA 49 (159)
Q Consensus 31 ~SPvPYLFgGLA~MLgLIA 49 (159)
.+|.||++.|+.+.+.+|+
T Consensus 28 ~~p~~~Ii~gii~~~~fV~ 46 (56)
T PF11174_consen 28 GSPVHFIIVGIILAALFVA 46 (56)
T ss_pred CCCchHHHHHHHHHHHHHH
Confidence 4799999999876655543
No 11
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=57.95 E-value=27 Score=30.42 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHHHHH----HHHHHHHHHhhh
Q 042254 33 PVPYLFGGLAAMLGL----IAFALLILACSY 59 (159)
Q Consensus 33 PvPYLFgGLA~MLgL----IAvALLILACSy 59 (159)
=+||+|.|+.++--| |++|++-+++.+
T Consensus 205 ~~~ff~lGF~laayl~l~~l~iAiig~~~A~ 235 (265)
T TIGR00822 205 LMPFFYLGFLFAAYTDFSLLAFGAVGGAGAL 235 (265)
T ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 479999999876443 677766665554
No 12
>PHA03283 envelope glycoprotein E; Provisional
Probab=57.87 E-value=12 Score=36.07 Aligned_cols=31 Identities=16% Similarity=0.492 Sum_probs=24.6
Q ss_pred CCCCCChhH--HHHHHHHHHHHHHHHHHHHHhhhc
Q 042254 28 SPWHSPVPY--LFGGLAAMLGLIAFALLILACSYW 60 (159)
Q Consensus 28 s~W~SPvPY--LFgGLA~MLgLIAvALLILACSy~ 60 (159)
..|- -+| +++||.+.+||+.++|++-+|-+.
T Consensus 393 ~~~~--~~~l~~~~~~~~~~~~~~~~l~vw~c~~~ 425 (542)
T PHA03283 393 GAWT--RHYLAFLLAIICTCAALLVALVVWGCILY 425 (542)
T ss_pred Cccc--cccchhHHHHHHHHHHHHHHHhhhheeee
Confidence 3553 455 588889999999999999999873
No 13
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=57.08 E-value=8.8 Score=24.12 Aligned_cols=14 Identities=50% Similarity=0.588 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhh
Q 042254 45 LGLIAFALLILACS 58 (159)
Q Consensus 45 LgLIAvALLILACS 58 (159)
+|+||.||.||.++
T Consensus 6 l~fiAtaLfi~iPt 19 (31)
T PF05151_consen 6 LAFIATALFILIPT 19 (31)
T ss_dssp THHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 67888888888765
No 14
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=55.91 E-value=18 Score=22.99 Aligned_cols=18 Identities=39% Similarity=0.634 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042254 38 FGGLAAMLGLIAFALLIL 55 (159)
Q Consensus 38 FgGLA~MLgLIAvALLIL 55 (159)
...||..||+.++.|+||
T Consensus 7 L~~lan~lG~~~~~LIVl 24 (35)
T PF10215_consen 7 LYTLANFLGVAAMVLIVL 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356888899999988886
No 15
>PF09928 DUF2160: Predicted small integral membrane protein (DUF2160); InterPro: IPR018678 The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.
Probab=55.47 E-value=12 Score=28.23 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=18.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHH
Q 042254 29 PWHSPVPYLFGGLAAMLGLIAF 50 (159)
Q Consensus 29 ~W~SPvPYLFgGLA~MLgLIAv 50 (159)
-|..|+--+|+++++||+..++
T Consensus 3 aWT~ptA~FF~~I~~~L~~mtv 24 (88)
T PF09928_consen 3 AWTWPTAIFFICIALMLAGMTV 24 (88)
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999877654
No 16
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=55.24 E-value=38 Score=27.95 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=26.5
Q ss_pred CCChhHH---HHHHHHHHHHHHHHHHHHHhhhcccCC
Q 042254 31 HSPVPYL---FGGLAAMLGLIAFALLILACSYWKLSD 64 (159)
Q Consensus 31 ~SPvPYL---FgGLA~MLgLIAvALLILACSy~K~ss 64 (159)
+|-.=|+ |.+|+..+.|+.++.++|+|+-|+...
T Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~~~v~l~~~~~~~~~ 43 (188)
T PRK13726 7 LSTSRVMAIAFIFLSVLIVLSLSVNVIQGVNNYRLQN 43 (188)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455 888888888899999999999988654
No 17
>PHA02909 hypothetical protein; Provisional
Probab=54.72 E-value=13 Score=26.79 Aligned_cols=9 Identities=67% Similarity=1.110 Sum_probs=6.9
Q ss_pred HHHHHhhhc
Q 042254 52 LLILACSYW 60 (159)
Q Consensus 52 LLILACSy~ 60 (159)
..||||||-
T Consensus 49 ftilacsyv 57 (72)
T PHA02909 49 FTILACSYV 57 (72)
T ss_pred HHHHHHHHH
Confidence 358999985
No 18
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=52.94 E-value=5.4 Score=32.67 Aligned_cols=29 Identities=38% Similarity=0.720 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042254 34 VPYLFGGLAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 34 vPYLFgGLA~MLgLIAvALLILACSy~K~ 62 (159)
.-||---|.++||-+|+.|..+.||||..
T Consensus 112 liylserlvvilggvavvltfilcsywpe 140 (175)
T PF13295_consen 112 LIYLSERLVVILGGVAVVLTFILCSYWPE 140 (175)
T ss_pred HHHHHhHHHHhcccchheeehhhhhcChH
Confidence 34666778889999999999999999963
No 19
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=52.80 E-value=15 Score=23.46 Aligned_cols=15 Identities=40% Similarity=0.769 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHh
Q 042254 43 AMLGLIAFALLILAC 57 (159)
Q Consensus 43 ~MLgLIAvALLILAC 57 (159)
+|+|+|-+.+++|.|
T Consensus 18 a~~gl~il~~~vl~a 32 (56)
T PF12911_consen 18 AVIGLIILLILVLLA 32 (56)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 20
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=52.70 E-value=2.4 Score=33.58 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhc-ccCCCC
Q 042254 46 GLIAFALLILACSYW-KLSDSR 66 (159)
Q Consensus 46 gLIAvALLILACSy~-K~ss~~ 66 (159)
.||-..||||-|-|. |+|+|.
T Consensus 33 ~VILgiLLliGCWYckRRSGYk 54 (118)
T PF14991_consen 33 IVILGILLLIGCWYCKRRSGYK 54 (118)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHhheeeeecchhh
Confidence 344445666666665 556664
No 21
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=52.65 E-value=4.6 Score=37.14 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=0.0
Q ss_pred CCCCCCCChhHHHHHH-HHHHHHHHHHHHHHHhhhcc
Q 042254 26 QRSPWHSPVPYLFGGL-AAMLGLIAFALLILACSYWK 61 (159)
Q Consensus 26 ~~s~W~SPvPYLFgGL-A~MLgLIAvALLILACSy~K 61 (159)
+...|.++.-.+++++ ++.++|+.+.++++.|.++|
T Consensus 343 ~p~~~~~~~~~~l~vVlgvavlivVv~viv~vc~~~r 379 (439)
T PF02480_consen 343 PPSPRTSRGAALLGVVLGVAVLIVVVGVIVWVCLRCR 379 (439)
T ss_dssp -------------------------------------
T ss_pred CCCCCCCcccchHHHHHHHHHHHHHHHHHhheeeeeh
Confidence 3455666666555555 23333333333444444443
No 22
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=51.90 E-value=21 Score=24.61 Aligned_cols=15 Identities=20% Similarity=0.292 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhh
Q 042254 44 MLGLIAFALLILACS 58 (159)
Q Consensus 44 MLgLIAvALLILACS 58 (159)
.||+||.+|.|+.=+
T Consensus 5 ~lgfiAtaLFi~iPT 19 (50)
T PRK14094 5 NFGFVASLLFVGVPT 19 (50)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777777766544
No 23
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=51.69 E-value=7 Score=29.54 Aligned_cols=12 Identities=25% Similarity=0.503 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 042254 46 GLIAFALLILAC 57 (159)
Q Consensus 46 gLIAvALLILAC 57 (159)
++|.|.|+++.|
T Consensus 10 ~~i~l~~~~~~~ 21 (130)
T PF12273_consen 10 VAILLFLFLFYC 21 (130)
T ss_pred HHHHHHHHHHHH
Confidence 333333334444
No 24
>PF15339 Afaf: Acrosome formation-associated factor
Probab=51.51 E-value=19 Score=30.70 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 042254 36 YLFGGLAAMLGLIAFALLILACS 58 (159)
Q Consensus 36 YLFgGLA~MLgLIAvALLILACS 58 (159)
=|.+|+.+|-.||-|.||++.|.
T Consensus 131 kLmLGIsLmTl~lfv~Ll~~c~a 153 (200)
T PF15339_consen 131 KLMLGISLMTLFLFVILLAFCSA 153 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999998886
No 25
>PF01998 DUF131: Protein of unknown function DUF131; InterPro: IPR002849 This archaebacterial protein family has no known function. The proteins are predicted to contain two transmembrane helices.
Probab=49.09 E-value=7 Score=27.59 Aligned_cols=24 Identities=42% Similarity=0.852 Sum_probs=14.7
Q ss_pred ChhHHHHH---HHHHHHHHHHHHHHHH
Q 042254 33 PVPYLFGG---LAAMLGLIAFALLILA 56 (159)
Q Consensus 33 PvPYLFgG---LA~MLgLIAvALLILA 56 (159)
|+|..||. ++..+.++|+.|+++.
T Consensus 33 PIPIvFGs~~~~~~~~~ilaiil~i~~ 59 (64)
T PF01998_consen 33 PIPIVFGSSPRIAKIAMILAIILMILA 59 (64)
T ss_pred cccEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 78888885 4444555555555543
No 26
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=48.53 E-value=17 Score=31.64 Aligned_cols=19 Identities=37% Similarity=0.732 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 042254 41 LAAMLGLIAFALLILACSY 59 (159)
Q Consensus 41 LA~MLgLIAvALLILACSy 59 (159)
+|..+.||-+|.|+|.|..
T Consensus 128 ~amLIClIIIAVLfLICT~ 146 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTL 146 (227)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5677889999999999984
No 27
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=46.70 E-value=44 Score=29.78 Aligned_cols=38 Identities=21% Similarity=-0.003 Sum_probs=28.3
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 042254 25 QQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS 63 (159)
Q Consensus 25 ~~~s~W~SPvPYLFgGLA~MLgLIAvALLILACSy~K~s 63 (159)
.|..++. |-+-++.++++|+|++.-..+++.+.++..+
T Consensus 404 ~P~~P~~-P~~~~~l~~g~~~Gl~lg~~~~~l~e~ld~~ 441 (498)
T TIGR03007 404 VPSKPSG-PNRPLLMLAGLLGGLGAGIGLAFLLSQLRPT 441 (498)
T ss_pred CCCCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444554 7777888899999998888888888877544
No 28
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=46.59 E-value=30 Score=23.71 Aligned_cols=22 Identities=50% Similarity=0.841 Sum_probs=15.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 042254 32 SPVPYLFGGLAAMLGLIAFALLIL 55 (159)
Q Consensus 32 SPvPYLFgGLA~MLgLIAvALLIL 55 (159)
||.+.++||+ |+|+-++.|+.+
T Consensus 1 Tp~~~l~GG~--lIGla~~~ll~~ 22 (62)
T PF14241_consen 1 TPWSALIGGL--LIGLAASLLLLL 22 (62)
T ss_pred CccHHHHHHH--HHHHHHHHHHHH
Confidence 6888999985 566666655554
No 29
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=46.19 E-value=17 Score=31.09 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 042254 34 VPYLFGGLAAMLGLIAFALLILACSYWKLSD 64 (159)
Q Consensus 34 vPYLFgGLA~MLgLIAvALLILACSy~K~ss 64 (159)
+|.. .|+++ .|||.+.|+.-.|.|||.+.
T Consensus 273 vPIa-VG~~L-a~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 273 VPIA-VGAAL-AGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred HHHH-HHHHH-HHHHHHHHHhheeEeccccc
Confidence 4443 55444 66777778887888877654
No 30
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=45.84 E-value=27 Score=30.35 Aligned_cols=28 Identities=25% Similarity=0.511 Sum_probs=20.1
Q ss_pred ChhHHHHHHHHH--HH---HHHHHHHHHHhhhc
Q 042254 33 PVPYLFGGLAAM--LG---LIAFALLILACSYW 60 (159)
Q Consensus 33 PvPYLFgGLA~M--Lg---LIAvALLILACSy~ 60 (159)
=.||+|.|+.++ ++ +|++|++-++|.+.
T Consensus 206 ~~~ff~lGF~l~ayl~~~~~i~iaiig~~iA~~ 238 (267)
T PRK09757 206 YIPYLIAGFLFVCYIQVSNLLPVAVLGAGFAVY 238 (267)
T ss_pred hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH
Confidence 479999998764 33 57888777777654
No 31
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=44.20 E-value=55 Score=28.48 Aligned_cols=27 Identities=15% Similarity=0.301 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHHHH----HHHHHHHHHhhh
Q 042254 33 PVPYLFGGLAAMLGL----IAFALLILACSY 59 (159)
Q Consensus 33 PvPYLFgGLA~MLgL----IAvALLILACSy 59 (159)
=.||+|.|+.++--| |++|++-+++.+
T Consensus 206 ~~~ff~lGFvl~ayl~l~~l~iAiig~~iA~ 236 (262)
T PRK15065 206 LMPFFYLGFVLAAFTNLNLIALGVIGVVLAL 236 (262)
T ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 479999999876444 777777666665
No 32
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=43.67 E-value=28 Score=28.82 Aligned_cols=30 Identities=37% Similarity=0.468 Sum_probs=26.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042254 33 PVPYLFGGLAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 33 PvPYLFgGLA~MLgLIAvALLILACSy~K~ 62 (159)
..||+..|+.+++.|+.+|+.-.-+..+|.
T Consensus 113 ~~~~i~~G~ia~~lLl~LaiTS~~~~~rrL 142 (205)
T PRK05419 113 KRPYITVGMAAFLILLPLALTSTRASQRRL 142 (205)
T ss_pred hchHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 478999999999999999999998887765
No 33
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=43.38 E-value=23 Score=25.09 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 042254 40 GLAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 40 GLA~MLgLIAvALLILACSy~K~ 62 (159)
-++.++.|+++.++++.|.+++.
T Consensus 6 ~~~g~~~ll~~v~~~~~~~rr~~ 28 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVCFRRCK 28 (75)
T ss_dssp HHHHHHHHHHHHHHHHCCCTT--
T ss_pred HHHHHHHHHHhheeEEEEEeeEc
Confidence 34445555666666777776654
No 34
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=42.78 E-value=8.1 Score=35.56 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=0.0
Q ss_pred hcccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 042254 20 ATVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSD 64 (159)
Q Consensus 20 ~~~~~~~~s~W~SPvPYLFgGLA~MLgLIAvALLILACSy~K~ss 64 (159)
.++.......|..-+-.++|++++++.++.++++++.|.++|...
T Consensus 341 ~~~p~~~~~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~ 385 (439)
T PF02480_consen 341 PAPPSPRTSRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQR 385 (439)
T ss_dssp ---------------------------------------------
T ss_pred CCCCCCCCCcccchHHHHHHHHHHHHHHHHHhheeeeehhccccc
Confidence 344567889999999999999999999999999999999998644
No 35
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=42.61 E-value=21 Score=24.41 Aligned_cols=11 Identities=27% Similarity=0.093 Sum_probs=6.3
Q ss_pred ccCccEEEEec
Q 042254 85 VYEEKILVIMA 95 (159)
Q Consensus 85 ~~EpKIvVIMA 95 (159)
+.++.|.||+|
T Consensus 61 ~~~~~vAaI~A 71 (79)
T PF04277_consen 61 DDPELVAAIAA 71 (79)
T ss_pred CChHHHHHHHH
Confidence 45555656654
No 36
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=42.47 E-value=33 Score=24.23 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc
Q 042254 35 PYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIES 70 (159)
Q Consensus 35 PYLFgGLA~MLgLIAvALLILACSy~K~ss~~d~e~ 70 (159)
-|+...++++||.|++.- +-|+- |+..++|+++
T Consensus 4 l~~Lipvsi~l~~v~l~~--flWav-ksgQyDDl~g 36 (58)
T COG3197 4 LYILIPVSILLGAVGLGA--FLWAV-KSGQYDDLDG 36 (58)
T ss_pred eeeHHHHHHHHHHHHHHH--HHHhc-ccCCcccccc
Confidence 467777887777655433 33332 5555656554
No 37
>CHL00080 psbM photosystem II protein M
Probab=42.27 E-value=25 Score=22.54 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhh
Q 042254 44 MLGLIAFALLILACS 58 (159)
Q Consensus 44 MLgLIAvALLILACS 58 (159)
.||+||.+|.|+.=+
T Consensus 5 ~lgfiAt~LFi~iPt 19 (34)
T CHL00080 5 ILAFIATALFILVPT 19 (34)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777777776543
No 38
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=41.40 E-value=35 Score=27.27 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=21.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 042254 27 RSPWHSPVPYLFGGLAAMLGLIAFALLILACS 58 (159)
Q Consensus 27 ~s~W~SPvPYLFgGLA~MLgLIAvALLILACS 58 (159)
..+|| |-+.+|+++..+|.|.||...-.
T Consensus 32 ~tpWN----ysiL~Ls~vvlvi~~~LLgrsi~ 59 (125)
T PF15048_consen 32 ATPWN----YSILALSFVVLVISFFLLGRSIQ 59 (125)
T ss_pred CCCcc----hHHHHHHHHHHHHHHHHHHHHhH
Confidence 44555 99999999999999988866543
No 39
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=41.13 E-value=82 Score=20.01 Aligned_cols=27 Identities=44% Similarity=0.754 Sum_probs=15.6
Q ss_pred CCChhHHHHHHHHHHHHHHHH-HHHHHhhhc
Q 042254 31 HSPVPYLFGGLAAMLGLIAFA-LLILACSYW 60 (159)
Q Consensus 31 ~SPvPYLFgGLA~MLgLIAvA-LLILACSy~ 60 (159)
|||+- |-.-+..-|||+| |-+|.|-.|
T Consensus 6 hsptt---gvvti~viliavaalg~licgcw 33 (33)
T PF09049_consen 6 HSPTT---GVVTIIVILIAVAALGALICGCW 33 (33)
T ss_dssp TTTHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCc---cEEEehhHHHHHHHHhhhheecC
Confidence 56653 3344556667775 446667655
No 40
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=40.33 E-value=33 Score=27.34 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=14.5
Q ss_pred ccCccEEEEecCCCC--CccccccC
Q 042254 85 VYEEKILVIMAGDEK--PTFLATPV 107 (159)
Q Consensus 85 ~~EpKIvVIMAGDe~--PTfLA~P~ 107 (159)
..++ |+|=+++++. ..||---+
T Consensus 70 ~l~~-fvVNL~~~~~~~~ryLkv~i 93 (166)
T PRK12785 70 DVPD-MLVNLAGDPGERVQYLKLKV 93 (166)
T ss_pred EcCC-EEEECCCCCCCcceEEEEEE
Confidence 3444 8899987653 68876544
No 41
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=40.09 E-value=29 Score=22.14 Aligned_cols=13 Identities=54% Similarity=0.825 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q 042254 44 MLGLIAFALLILA 56 (159)
Q Consensus 44 MLgLIAvALLILA 56 (159)
.+|+||.+|.|+.
T Consensus 5 ~l~fiAt~Lfi~i 17 (33)
T TIGR03038 5 ILGFIATLLFILV 17 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3567777776665
No 42
>COG4961 TadG Flp pilus assembly protein TadG [Intracellular trafficking and secretion]
Probab=39.81 E-value=29 Score=27.66 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 042254 39 GGLAAMLGLIAFALLILACS 58 (159)
Q Consensus 39 gGLA~MLgLIAvALLILACS 58 (159)
|..|+|++||+.-||+|.+-
T Consensus 21 Ga~AVeFAlvap~ll~l~~g 40 (185)
T COG4961 21 GAAAVEFALVAPPLLLLVFG 40 (185)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999886
No 43
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=39.07 E-value=40 Score=28.32 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccC
Q 042254 41 LAAMLGLIAFALLILACSYWKLS 63 (159)
Q Consensus 41 LA~MLgLIAvALLILACSy~K~s 63 (159)
+++.+-+|.+-+||..||.||..
T Consensus 36 iaIvVliiiiivli~lcssRKkK 58 (189)
T PF05568_consen 36 IAIVVLIIIIIVLIYLCSSRKKK 58 (189)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH
Confidence 34444456667788889988754
No 44
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=38.97 E-value=29 Score=25.92 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhhcccC
Q 042254 43 AMLGLIAFALLILACSYWKLS 63 (159)
Q Consensus 43 ~MLgLIAvALLILACSy~K~s 63 (159)
+++|+++|.++|+++-|||.-
T Consensus 6 iv~~~~~v~~~i~~y~~~k~~ 26 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLWWKVK 26 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888854
No 45
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=37.49 E-value=56 Score=21.41 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042254 37 LFGGLAAMLGLIAFALLILA 56 (159)
Q Consensus 37 LFgGLA~MLgLIAvALLILA 56 (159)
|+.|..+.++.|++||+...
T Consensus 12 l~aG~~iVv~~i~~ali~VS 31 (39)
T PF06596_consen 12 LVAGAVIVVIPIAGALIFVS 31 (39)
T ss_dssp HHHHH-HHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhheEEEe
Confidence 56677788888999888764
No 46
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.48 E-value=55 Score=23.02 Aligned_cols=27 Identities=33% Similarity=0.657 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccC
Q 042254 37 LFGGLAAMLGLIAFALLILACSYWKLS 63 (159)
Q Consensus 37 LFgGLA~MLgLIAvALLILACSy~K~s 63 (159)
.+-|.+--.|||++.|+.++|-||-.+
T Consensus 5 ~~~~~a~a~~t~~~~l~fiavi~~ayr 31 (60)
T COG4736 5 MMRGFADAWGTIAFTLFFIAVIYFAYR 31 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778888999999999998876543
No 47
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=37.08 E-value=38 Score=25.65 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhhc
Q 042254 36 YLFGGLAAMLGLIAFALL-ILACSYW 60 (159)
Q Consensus 36 YLFgGLA~MLgLIAvALL-ILACSy~ 60 (159)
|++.|=++.|.|++|+|. +|-|-++
T Consensus 18 yiiA~gga~llL~~v~l~vvL~C~r~ 43 (87)
T PF11980_consen 18 YIIAMGGALLLLVAVCLGVVLYCHRF 43 (87)
T ss_pred HHHhhccHHHHHHHHHHHHHHhhhhh
Confidence 667777777777777744 4444443
No 48
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=36.96 E-value=34 Score=22.08 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhh
Q 042254 44 MLGLIAFALLILACS 58 (159)
Q Consensus 44 MLgLIAvALLILACS 58 (159)
.||+||.+|.|+.=+
T Consensus 5 ~lgfiAt~Lfi~iPt 19 (35)
T PRK04989 5 DLGFVASLLFVLVPT 19 (35)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356677776665533
No 49
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=36.80 E-value=48 Score=25.25 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccC
Q 042254 37 LFGGLAAMLGLIAFALLILACSYWKLS 63 (159)
Q Consensus 37 LFgGLA~MLgLIAvALLILACSy~K~s 63 (159)
++.++-++|.||.|+.-||+|-..|+.
T Consensus 2 ~Ll~il~llLll~l~asl~~wr~~~rq 28 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLAWRMKQRQ 28 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555556677788888888766543
No 50
>PF03916 NrfD: Polysulphide reductase, NrfD; InterPro: IPR005614 NrfD is an integral transmembrane protein with loops in both the periplasm and the cytoplasm. NrfD is thought to participate in the transfer of electrons, from the quinone pool into the terminal components of the Nrf pathway [].
Probab=36.75 E-value=40 Score=28.37 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=16.8
Q ss_pred cCCCCCCCCh-hHHHHHHHHHHHH
Q 042254 25 QQRSPWHSPV-PYLFGGLAAMLGL 47 (159)
Q Consensus 25 ~~~s~W~SPv-PYLFgGLA~MLgL 47 (159)
..+..||||. |.+|.--|+.-|+
T Consensus 165 ~~~p~W~s~~lp~lFl~sAl~sG~ 188 (313)
T PF03916_consen 165 KARPLWNSPLLPPLFLVSALASGA 188 (313)
T ss_pred hcchhHhhhhHHHHHHHHHHHHHH
Confidence 4677899984 7777777766665
No 51
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=36.71 E-value=65 Score=22.32 Aligned_cols=20 Identities=40% Similarity=0.355 Sum_probs=15.3
Q ss_pred CCChhHHHHHHHHHHHHHHH
Q 042254 31 HSPVPYLFGGLAAMLGLIAF 50 (159)
Q Consensus 31 ~SPvPYLFgGLA~MLgLIAv 50 (159)
.+|-.-++..+|+++||+.=
T Consensus 54 ~~P~~~lil~l~~~~Gl~lg 73 (82)
T PF13807_consen 54 VSPKRALILALGLFLGLILG 73 (82)
T ss_pred CCCcHHHHHHHHHHHHHHHH
Confidence 46777888889999988543
No 52
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=36.04 E-value=44 Score=27.18 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042254 35 PYLFGGLAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 35 PYLFgGLA~MLgLIAvALLILACSy~K~ 62 (159)
-.||.|+++|.|=++-|+.||.=-|-..
T Consensus 101 ~~LFigf~l~fggl~~s~~vli~~yv~~ 128 (166)
T PF05255_consen 101 LWLFIGFALSFGGLAGSVWVLILKYVVP 128 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 3799999999999999999998666543
No 53
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=35.34 E-value=93 Score=25.10 Aligned_cols=61 Identities=26% Similarity=0.370 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccCCCCCCCcccCCccccCccEEEEecCCC
Q 042254 32 SPVPYLFGGLAAMLGLIAFALLILACSYWKLSDSRDIESGDKGQEGDAANSVKVYEEKILVIMAGDE 98 (159)
Q Consensus 32 SPvPYLFgGLA~MLgLIAvALLILACSy~K~ss~~d~e~~~~~~~~~~~~~~~~~EpKIvVIMAGDe 98 (159)
...-.+||+|.++|+||-+ ++|-.+|..... .-.+...= +--+..++--.++|+||=.||.
T Consensus 22 ~~~~~~~gsL~~iL~lil~----~~wl~kr~~~~~-~~~~~~~l-kil~~~~lG~resV~lV~V~~~ 82 (137)
T COG3190 22 LELAQMFGSLILILALILF----LAWLVKRLGRAP-LFKGSSGL-KILASRSLGSRESVVLVEVGDK 82 (137)
T ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHhhcc-cCCcccce-eeecccccCCCceEEEEEECCE
Confidence 3477889999888888744 344444543210 00000000 0001233445677777777773
No 54
>PLN00085 photosystem II reaction center protein M (PsbM); Provisional
Probab=34.81 E-value=44 Score=27.22 Aligned_cols=22 Identities=41% Similarity=0.606 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhh------hcccCCC
Q 042254 44 MLGLIAFALLILACS------YWKLSDS 65 (159)
Q Consensus 44 MLgLIAvALLILACS------y~K~ss~ 65 (159)
.||+||.+|.||.=+ |-|..+.
T Consensus 82 iLgfIAtaLFIlIPTaFLLILYVkTaS~ 109 (149)
T PLN00085 82 ILGVIATALFIIIPTSFLIILYVKSASE 109 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeeccc
Confidence 589999999887755 6665544
No 55
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=33.86 E-value=58 Score=25.15 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=26.7
Q ss_pred cccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 042254 21 TVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLIL 55 (159)
Q Consensus 21 ~~~~~~~s~W~SPvPYLFgGLA~MLgLIAvALLIL 55 (159)
....-.+|.|+=|.=-.+.|-++|=+||++.+.+-
T Consensus 48 V~~~~lfg~~~~PLilvil~s~v~G~Li~~~~~~~ 82 (98)
T COG5416 48 VEFNYLFGQWELPLILVILGAAVVGALIAMFAGIA 82 (98)
T ss_pred eEEEeecchhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 34445778899898888888888888888776653
No 56
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=33.63 E-value=59 Score=27.59 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=17.7
Q ss_pred hhHHHH-----HHHHHHHHHHHHHHHHHhhhcccC
Q 042254 34 VPYLFG-----GLAAMLGLIAFALLILACSYWKLS 63 (159)
Q Consensus 34 vPYLFg-----GLA~MLgLIAvALLILACSy~K~s 63 (159)
+||+|. ++.+.+++-.++|.+|-+-+-+.+
T Consensus 173 lPy~~~~~~~~a~~~si~l~~~aL~ilG~~~s~~s 207 (241)
T cd02435 173 LPYFFVSTVGEALLLSVIVTLVALFVFGYVKTWFT 207 (241)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478773 455555555666666666555544
No 57
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=32.63 E-value=52 Score=27.19 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhhcccCC
Q 042254 42 AAMLGLIAFALLILACSYWKLSD 64 (159)
Q Consensus 42 A~MLgLIAvALLILACSy~K~ss 64 (159)
+++|.||.+--||-.||+|+.+.
T Consensus 129 vv~~iliii~CLiei~shr~a~~ 151 (154)
T PF14914_consen 129 VVVMILIIIFCLIEICSHRRASE 151 (154)
T ss_pred HHHHHHHHHHHHHHHHhcccccc
Confidence 34566677777888899988654
No 58
>PF04976 DmsC: DMSO reductase anchor subunit (DmsC); InterPro: IPR007059 The terminal electron transfer enzyme dimethyl sulphoxide reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC) []. This family represents DmsC.; GO: 0019645 anaerobic electron transport chain, 0016021 integral to membrane
Probab=32.28 E-value=62 Score=27.44 Aligned_cols=28 Identities=39% Similarity=0.590 Sum_probs=20.3
Q ss_pred cCCCCCCCCh-hHHHHHHHHHHHHHHHHH
Q 042254 25 QQRSPWHSPV-PYLFGGLAAMLGLIAFAL 52 (159)
Q Consensus 25 ~~~s~W~SPv-PYLFgGLA~MLgLIAvAL 52 (159)
..+..||+|. |..|.|-++++|.+..++
T Consensus 140 ~~vp~W~~~~T~~~f~~tal~~G~~l~~~ 168 (276)
T PF04976_consen 140 TTVPAWNSPWTPISFLGTALLLGAALAAL 168 (276)
T ss_pred cchhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 4567788884 556888888999865544
No 59
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=31.61 E-value=60 Score=23.49 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 042254 36 YLFGGLAAMLGLIAFALLILACSYWKLS 63 (159)
Q Consensus 36 YLFgGLA~MLgLIAvALLILACSy~K~s 63 (159)
+.|..+-+++++|-||.+-|..-|++..
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677777788888888888888888543
No 60
>PF11143 DUF2919: Protein of unknown function (DUF2919); InterPro: IPR021318 This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.
Probab=31.41 E-value=48 Score=26.47 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Q 042254 40 GLAAMLGLIAFALLILACSYWKLS 63 (159)
Q Consensus 40 GLA~MLgLIAvALLILACSy~K~s 63 (159)
.|++.+|+.|+.++ +.|++|+..
T Consensus 57 ~lgL~~g~Pall~~-~l~~~R~~~ 79 (149)
T PF11143_consen 57 YLGLAAGLPALLLM-LLSGRRHRS 79 (149)
T ss_pred HHHHHHhHHHHHHH-HHHccCCCC
Confidence 46777899999888 888888743
No 61
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=31.07 E-value=50 Score=25.62 Aligned_cols=19 Identities=37% Similarity=0.703 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 042254 44 MLGLIAFALLILACSYWKL 62 (159)
Q Consensus 44 MLgLIAvALLILACSy~K~ 62 (159)
.++-|++-|+||+|.-+|+
T Consensus 6 ~~~aiG~lL~IL~CAL~~n 24 (120)
T PF04133_consen 6 FFLAIGFLLVILSCALYKN 24 (120)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3456888999999997553
No 62
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=30.65 E-value=45 Score=23.39 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhh
Q 042254 47 LIAFALLILACS 58 (159)
Q Consensus 47 LIAvALLILACS 58 (159)
++|+|+++|+|.
T Consensus 5 I~Aiaf~vLvi~ 16 (90)
T PF06103_consen 5 IAAIAFAVLVIF 16 (90)
T ss_pred HHHHHHHHHHHH
Confidence 455555555554
No 63
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=30.53 E-value=64 Score=23.42 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042254 36 YLFGGLAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 36 YLFgGLA~MLgLIAvALLILACSy~K~ 62 (159)
+.|...-+++++|-||.+-|..-|++.
T Consensus 3 ~~fl~~plivf~ifVap~WL~lHY~sk 29 (75)
T PF06667_consen 3 FEFLFVPLIVFMIFVAPIWLILHYRSK 29 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666677777778887777777654
No 64
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=30.40 E-value=95 Score=21.63 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=18.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 042254 33 PVPYLFGGLAAMLGLIAFALLILACSY 59 (159)
Q Consensus 33 PvPYLFgGLA~MLgLIAvALLILACSy 59 (159)
.-||...|+.+++.++.+++.-+.+-+
T Consensus 76 ~~~~~~~G~~a~~~l~~l~~tS~~~~R 102 (125)
T PF01794_consen 76 TGPYNLTGIIALLLLLILAVTSFPWIR 102 (125)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777777766666666
No 65
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=29.88 E-value=81 Score=23.03 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 042254 37 LFGGLAAMLGLIAFALLILACSYW 60 (159)
Q Consensus 37 LFgGLA~MLgLIAvALLILACSy~ 60 (159)
.|..+++++.++++-+.++.|-++
T Consensus 73 ~~~~l~~~~~~~a~~~~~~~~~~~ 96 (172)
T PF13903_consen 73 AFLILGLLLLLFAFVFALIGFCKR 96 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555555555555555544443
No 66
>PTZ00370 STEVOR; Provisional
Probab=29.83 E-value=53 Score=29.60 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHH-Hhhhccc
Q 042254 39 GGLAAMLGLIAFALLIL-ACSYWKL 62 (159)
Q Consensus 39 gGLA~MLgLIAvALLIL-ACSy~K~ 62 (159)
|--|+.|-+++|.|+|| .|=|||+
T Consensus 258 giaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445566688888887 4556554
No 67
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=29.79 E-value=1.2e+02 Score=19.96 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=19.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHhhhcccCC
Q 042254 37 LFGGLAAMLGL---IAFALLILACSYWKLSD 64 (159)
Q Consensus 37 LFgGLA~MLgL---IAvALLILACSy~K~ss 64 (159)
.+-+++-..|| +++-+.|+.+.||+.+.
T Consensus 6 ~lr~~a~~~~l~~~~~~Figiv~wa~~p~~k 36 (48)
T cd01324 6 TLRGLADSWGLLYLALFFLGVVVWAFRPGRK 36 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45666666666 55667778888887654
No 68
>PF15240 Pro-rich: Proline-rich
Probab=29.62 E-value=35 Score=28.58 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH
Q 042254 44 MLGLIAFALLILA 56 (159)
Q Consensus 44 MLgLIAvALLILA 56 (159)
+|.|+.||||.|.
T Consensus 2 LlVLLSvALLALS 14 (179)
T PF15240_consen 2 LLVLLSVALLALS 14 (179)
T ss_pred hhHHHHHHHHHhh
Confidence 4567888998885
No 69
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=29.48 E-value=19 Score=29.61 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCC
Q 042254 40 GLAAMLGLIAFALLILACSYWKLSDS 65 (159)
Q Consensus 40 GLA~MLgLIAvALLILACSy~K~ss~ 65 (159)
|++.-|.|++++|+.+.|-++|....
T Consensus 57 GVGg~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 57 GVGGPILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred cccHHHHHHHHHhheeEEEecccCcc
Confidence 34443334455555555656565443
No 70
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=28.74 E-value=96 Score=24.93 Aligned_cols=37 Identities=38% Similarity=0.442 Sum_probs=22.0
Q ss_pred CCCCCCCC-----hhHHHHHHHHHHH--HHHHHHHHHHhhhccc
Q 042254 26 QRSPWHSP-----VPYLFGGLAAMLG--LIAFALLILACSYWKL 62 (159)
Q Consensus 26 ~~s~W~SP-----vPYLFgGLA~MLg--LIAvALLILACSy~K~ 62 (159)
+..+|.|| +|-.+|||.+..- +=|++||==.|-+|-+
T Consensus 73 ~~sp~ps~p~d~aLp~VIGGLcaL~LaamGA~~LLrR~cRr~ar 116 (126)
T PF03229_consen 73 SSSPGPSPPVDFALPLVIGGLCALTLAAMGAGALLRRCCRRAAR 116 (126)
T ss_pred CCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677776 6888999876432 2334444446665543
No 71
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=28.50 E-value=38 Score=20.26 Aligned_cols=20 Identities=30% Similarity=0.575 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 042254 40 GLAAMLGLIAFALLILACSYW 60 (159)
Q Consensus 40 GLA~MLgLIAvALLILACSy~ 60 (159)
|+++++.|. +-|+|.-|||.
T Consensus 5 ~FalivVLF-ILLiIvG~s~~ 24 (24)
T PF09680_consen 5 GFALIVVLF-ILLIIVGASCF 24 (24)
T ss_pred cchhHHHHH-HHHHHhcceeC
Confidence 455555553 34677778763
No 72
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=28.24 E-value=1e+02 Score=26.50 Aligned_cols=35 Identities=9% Similarity=-0.042 Sum_probs=27.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042254 28 SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 28 s~W~SPvPYLFgGLA~MLgLIAvALLILACSy~K~ 62 (159)
...+--+.++|..++++..++++.|+++-+.+-|.
T Consensus 239 Ggkn~~Lgi~ylvvg~i~~v~~i~~~~~~~~~~r~ 273 (278)
T PF03381_consen 239 GGKNYFLGIAYLVVGGICLVLAIIFLIIHYFKPRK 273 (278)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44566678888888999999999999988776554
No 73
>PHA00736 hypothetical protein
Probab=28.02 E-value=51 Score=24.35 Aligned_cols=14 Identities=50% Similarity=0.795 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 042254 37 LFGGLAAMLGLIAF 50 (159)
Q Consensus 37 LFgGLA~MLgLIAv 50 (159)
||-|+++++||||=
T Consensus 57 lfwgi~vifgliag 70 (79)
T PHA00736 57 LFWGITVIFGLIAG 70 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 68899999999974
No 74
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=27.82 E-value=48 Score=24.87 Aligned_cols=18 Identities=50% Similarity=0.685 Sum_probs=9.5
Q ss_pred hHHHHH----HHHHHHHHHHHH
Q 042254 35 PYLFGG----LAAMLGLIAFAL 52 (159)
Q Consensus 35 PYLFgG----LA~MLgLIAvAL 52 (159)
|-|++| |+++.|+||++|
T Consensus 15 p~Ll~Ga~R~l~i~~g~la~~l 36 (94)
T PRK13823 15 PNLFMGGDRELVMFSGLLAGIL 36 (94)
T ss_pred cHhhCCcchHHHHHHHHHHHHH
Confidence 445554 555555555554
No 75
>cd01059 CCC1_like CCC1-related family of proteins. CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.
Probab=27.67 E-value=97 Score=23.77 Aligned_cols=30 Identities=37% Similarity=0.507 Sum_probs=15.8
Q ss_pred hhHHHHH---HHHHHHHH---HHHHHHHHhhhcccC
Q 042254 34 VPYLFGG---LAAMLGLI---AFALLILACSYWKLS 63 (159)
Q Consensus 34 vPYLFgG---LA~MLgLI---AvALLILACSy~K~s 63 (159)
+||+|.. +++.+.++ .++|.++.+...|.+
T Consensus 79 lp~~~~~~~~~a~~~si~~~~~~~l~~~g~~~~~~~ 114 (143)
T cd01059 79 LPYLLLPAGSLALAVSVALVVALALFLLGAFVAKLG 114 (143)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5787763 34444443 345555555555543
No 76
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=27.49 E-value=27 Score=27.50 Aligned_cols=6 Identities=33% Similarity=0.517 Sum_probs=3.3
Q ss_pred CCChhH
Q 042254 31 HSPVPY 36 (159)
Q Consensus 31 ~SPvPY 36 (159)
.+|.-|
T Consensus 70 ~~p~~~ 75 (179)
T PF13908_consen 70 YDPPIY 75 (179)
T ss_pred cCcccc
Confidence 456555
No 77
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=27.23 E-value=96 Score=26.06 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=29.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 042254 28 SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS 63 (159)
Q Consensus 28 s~W~SPvPYLFgGLA~MLgLIAvALLILACSy~K~s 63 (159)
+-=.-|.|.+++.++++-++.++.-+.+.+.|||..
T Consensus 41 ~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~ 76 (295)
T PF06814_consen 41 PAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSV 76 (295)
T ss_pred ChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 334568999999999999999988888888888754
No 78
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=27.01 E-value=89 Score=25.73 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 042254 36 YLFGGLAAMLGLIAFALLILACSYWK 61 (159)
Q Consensus 36 YLFgGLA~MLgLIAvALLILACSy~K 61 (159)
++||-+++++|.+.++++...|-.||
T Consensus 302 ~~fG~~G~il~~pi~~~~~~~~~~~~ 327 (327)
T PF01594_consen 302 YLFGFIGLILAPPILAVIKAIFEEYR 327 (327)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 67888889999988888888887664
No 79
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=26.75 E-value=75 Score=21.62 Aligned_cols=21 Identities=19% Similarity=0.547 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 042254 41 LAAMLGLIAFALLILACSYWK 61 (159)
Q Consensus 41 LA~MLgLIAvALLILACSy~K 61 (159)
+++|+.+++++|++-+|---+
T Consensus 6 i~~i~~~l~~~~~l~~CnTv~ 26 (48)
T PRK10081 6 IAAIFSVLVLSTVLTACNTTR 26 (48)
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 567788888888888895444
No 80
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=26.69 E-value=59 Score=25.97 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 042254 40 GLAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 40 GLA~MLgLIAvALLILACSy~K~ 62 (159)
-|-+|++|+.++|++.+.+++.-
T Consensus 3 ~l~a~~~Lvl~~~~lva~a~~Tg 25 (135)
T TIGR03054 3 LLIAMLGLVLLTFALVAFAVLTG 25 (135)
T ss_pred HHHHHHHHHHHHHHHhheeeecC
Confidence 46789999999999999998873
No 81
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.67 E-value=55 Score=27.34 Aligned_cols=18 Identities=39% Similarity=0.931 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042254 36 YLFGGLAAMLGLIAFALLI 54 (159)
Q Consensus 36 YLFgGLA~MLgLIAvALLI 54 (159)
|+.||+.+.+||| +.||+
T Consensus 174 f~~Gg~v~~~Gll-lGlil 191 (206)
T PRK10884 174 FMYGGGVAGIGLL-LGLLL 191 (206)
T ss_pred HHHchHHHHHHHH-HHHHh
Confidence 6789999999998 44443
No 82
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=26.30 E-value=59 Score=34.04 Aligned_cols=26 Identities=35% Similarity=0.810 Sum_probs=21.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHhh---hcccC
Q 042254 38 FGGLAAMLGL-IAFALLILACS---YWKLS 63 (159)
Q Consensus 38 FgGLA~MLgL-IAvALLILACS---y~K~s 63 (159)
|.|+..||+. ++++||+++|- |||+.
T Consensus 826 maGvFymL~~amgLSllvfi~EHlvYw~Lr 855 (1258)
T KOG1053|consen 826 MAGVFYMLAVAMGLSLLVFIWEHLVYWKLR 855 (1258)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788888877 89999999996 88865
No 83
>PRK12361 hypothetical protein; Provisional
Probab=26.27 E-value=84 Score=28.87 Aligned_cols=14 Identities=29% Similarity=0.933 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhhcc
Q 042254 48 IAFALLILACSYWK 61 (159)
Q Consensus 48 IAvALLILACSy~K 61 (159)
.|+||++.++.|+-
T Consensus 37 ~~~~~~~v~~~y~~ 50 (547)
T PRK12361 37 ISLSLFLVGSAYWF 50 (547)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777888888764
No 84
>PF10826 DUF2551: Protein of unknown function (DUF2551) ; InterPro: IPR020501 This entry contains proteins with no known function.
Probab=26.14 E-value=50 Score=24.75 Aligned_cols=20 Identities=45% Similarity=0.669 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 042254 38 FGGLAAMLGLIAFALLILAC 57 (159)
Q Consensus 38 FgGLA~MLgLIAvALLILAC 57 (159)
+=|.|+|+|+|+-=|-||--
T Consensus 43 ~~~VasMVG~i~SrlGIL~~ 62 (83)
T PF10826_consen 43 YRGVASMVGLIHSRLGILSI 62 (83)
T ss_pred HHHHHHHHHHHHHhhhheee
Confidence 35899999999999998863
No 85
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=25.70 E-value=23 Score=31.36 Aligned_cols=11 Identities=55% Similarity=0.767 Sum_probs=0.0
Q ss_pred cEEEEecCCCCC
Q 042254 89 KILVIMAGDEKP 100 (159)
Q Consensus 89 KIvVIMAGDe~P 100 (159)
|-=||| =||||
T Consensus 209 ~~P~Il-keEkP 219 (290)
T PF05454_consen 209 KSPVIL-KEEKP 219 (290)
T ss_dssp ------------
T ss_pred CCCeee-cccCC
Confidence 444666 34554
No 86
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=25.39 E-value=89 Score=27.39 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=25.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042254 26 QRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 26 ~~s~W~SPvPYLFgGLA~MLgLIAvALLILACSy~K~ 62 (159)
-+..|++..-++||-+|+++-+|.+.| |||++.
T Consensus 93 ~fgEW~~~~~~~~G~~Al~liiiGv~l----ts~~~~ 125 (269)
T PF06800_consen 93 FFGEWTTTTQKIIGFLALVLIIIGVIL----TSYQDK 125 (269)
T ss_pred hcCCCCCcchHHHHHHHHHHHHHHHHH----hccccc
Confidence 478999999999999888777777654 566543
No 87
>PRK13792 lysozyme inhibitor; Provisional
Probab=25.32 E-value=37 Score=26.82 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 042254 42 AAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 42 A~MLgLIAvALLILACSy~K~ 62 (159)
++++.|+++++|+-+||.-..
T Consensus 4 ~l~~ll~~~~~lLsaCs~~~~ 24 (127)
T PRK13792 4 ALWLLLAAVPVVLVACGGSDD 24 (127)
T ss_pred HHHHHHHHHHhheecccCCCC
Confidence 467788899999999998654
No 88
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.25 E-value=71 Score=32.11 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHH
Q 042254 31 HSPVPYLFGGLAAMLGLIAFALLIL 55 (159)
Q Consensus 31 ~SPvPYLFgGLA~MLgLIAvALLIL 55 (159)
++-.=|+|--|+.|||+.+|||||=
T Consensus 425 ~~~~E~Vf~~~~w~mGVFvFslliG 449 (815)
T KOG0499|consen 425 QTLFEIVFQLLNWFMGVFVFSLLIG 449 (815)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456799999999999999999984
No 89
>PRK09458 pspB phage shock protein B; Provisional
Probab=25.11 E-value=90 Score=22.96 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042254 36 YLFGGLAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 36 YLFgGLA~MLgLIAvALLILACSy~K~ 62 (159)
++|.+.-+++++|-||.+=|..-|+..
T Consensus 3 ~~fl~~PliiF~ifVaPiWL~LHY~sk 29 (75)
T PRK09458 3 ALFLAIPLTIFVLFVAPIWLWLHYRSK 29 (75)
T ss_pred chHHHHhHHHHHHHHHHHHHHHhhccc
Confidence 678888899999999999999988753
No 90
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=24.92 E-value=63 Score=25.29 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=17.4
Q ss_pred cCCCCCCCChhHHHHHHHHHHHH
Q 042254 25 QQRSPWHSPVPYLFGGLAAMLGL 47 (159)
Q Consensus 25 ~~~s~W~SPvPYLFgGLA~MLgL 47 (159)
.|+..++.|..+.||||+.+||=
T Consensus 20 ~P~f~~~~p~~~~yg~lG~ilah 42 (206)
T PF01431_consen 20 PPFFDPNYPPALNYGGLGFILAH 42 (206)
T ss_dssp TTT--TTS-HHHHHHTHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHH
Confidence 56678899999999999998875
No 91
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.77 E-value=2.6e+02 Score=21.92 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=15.4
Q ss_pred ccCccEEEEe-cCCCCCccccccC
Q 042254 85 VYEEKILVIM-AGDEKPTFLATPV 107 (159)
Q Consensus 85 ~~EpKIvVIM-AGDe~PTfLA~P~ 107 (159)
..+ .|+|=+ .++....||---+
T Consensus 63 ~L~-~f~VNL~~~~~~~rylkv~i 85 (162)
T PRK07021 63 PLE-TFTVNLQPDDDADRVLYVGL 85 (162)
T ss_pred ecC-CEEEEcCCCCCCceEEEEEE
Confidence 345 488888 5666788987554
No 92
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.06 E-value=2.9e+02 Score=21.83 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=16.8
Q ss_pred cCccEEEEecCCCCCccccccC
Q 042254 86 YEEKILVIMAGDEKPTFLATPV 107 (159)
Q Consensus 86 ~EpKIvVIMAGDe~PTfLA~P~ 107 (159)
.+|-|+|=++|+..-.||-.-+
T Consensus 72 l~~~fvvNl~~~~~~ryLkv~i 93 (170)
T PRK05696 72 MPRPFVFNVPGNGRDRLVQIKV 93 (170)
T ss_pred cCCCEEEEecCCCCceEEEEEE
Confidence 3567999998888888987544
No 93
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=24.04 E-value=79 Score=25.71 Aligned_cols=7 Identities=0% Similarity=-0.572 Sum_probs=5.1
Q ss_pred cCCCCCC
Q 042254 25 QQRSPWH 31 (159)
Q Consensus 25 ~~~s~W~ 31 (159)
..+|.|+
T Consensus 177 ~~~w~pn 183 (209)
T PF11353_consen 177 ASFWVPN 183 (209)
T ss_pred EEEEecc
Confidence 5668888
No 94
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=23.76 E-value=1.2e+02 Score=21.00 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042254 35 PYLFGGLAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 35 PYLFgGLA~MLgLIAvALLILACSy~K~ 62 (159)
.||..|+++.+.|.-+-|.+..+-..|.
T Consensus 7 s~L~~~F~~lIC~Fl~~~~~F~~F~~Kq 34 (54)
T PF06716_consen 7 SYLLLAFGFLICLFLFCLVVFIWFVYKQ 34 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999998888555555555555553
No 95
>PF07937 DUF1686: Protein of unknown function (DUF1686); InterPro: IPR012468 The members of this family are all hypothetical proteins of unknown function expressed by the eukaryotic parasite Encephalitozoon cuniculi GB-M1. The region in question is approximately 250 amino acids long.
Probab=23.72 E-value=63 Score=27.39 Aligned_cols=18 Identities=44% Similarity=0.864 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 042254 44 MLGLIAFALLILACSYWK 61 (159)
Q Consensus 44 MLgLIAvALLILACSy~K 61 (159)
-+|||.||+|+|.++|-+
T Consensus 129 ~~g~Vvfa~lLllv~y~e 146 (185)
T PF07937_consen 129 CVGLVVFAILLLLVSYME 146 (185)
T ss_pred ehHHHHHHHHHHHHHHHH
Confidence 368999999999999974
No 96
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.71 E-value=1.1e+02 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=20.2
Q ss_pred CChhHHHHHHHHH--HHHHHHHHHHHHhhhc
Q 042254 32 SPVPYLFGGLAAM--LGLIAFALLILACSYW 60 (159)
Q Consensus 32 SPvPYLFgGLA~M--LgLIAvALLILACSy~ 60 (159)
-|.-++|++++++ ..||.++|.|+.|+.+
T Consensus 39 ~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~ 69 (111)
T TIGR03750 39 LLLALLAGPWALIPTGALLGPILVVLIGGKL 69 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444666656554 5678889999999854
No 97
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=23.64 E-value=94 Score=25.91 Aligned_cols=23 Identities=30% Similarity=0.386 Sum_probs=12.6
Q ss_pred HHHHHHH-HHHHHHHHHhhhcccC
Q 042254 41 LAAMLGL-IAFALLILACSYWKLS 63 (159)
Q Consensus 41 LA~MLgL-IAvALLILACSy~K~s 63 (159)
+...+++ -.++|+++-+..-+.+
T Consensus 172 ~~~s~~~~~~~~L~~~G~~~~~~~ 195 (225)
T cd02434 172 FALSILIFVAFTLFLLGSFKSKLY 195 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444554 5566666666555543
No 98
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=23.45 E-value=67 Score=27.12 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCC
Q 042254 41 LAAMLGLIAFALLILACSYWKLSD 64 (159)
Q Consensus 41 LA~MLgLIAvALLILACSy~K~ss 64 (159)
+-..+++|.+.+++..|+|..+-.
T Consensus 4 ~~i~l~vi~il~ll~~~~yN~lv~ 27 (185)
T COG1704 4 FLIILAVIVILLLLAVGGYNGLVK 27 (185)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHH
Confidence 445667777777777999987643
No 99
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=23.45 E-value=1.3e+02 Score=23.75 Aligned_cols=56 Identities=16% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCcccCCCCCCCcccCCccccCccEEEEecCCC
Q 042254 43 AMLGLIAFALLILACSYWKLSDSRDIESGDKGQEGDAANSVKVYEEKILVIMAGDE 98 (159)
Q Consensus 43 ~MLgLIAvALLILACSy~K~ss~~d~e~~~~~~~~~~~~~~~~~EpKIvVIMAGDe 98 (159)
++.+|+.|-++|++|.|-=..-...........=+--...+.--.||||||=.||+
T Consensus 21 v~~~L~lVl~lI~~~aWLlkR~~~~~~~~~~~~lkVva~~slG~RErvvvVeV~~~ 76 (124)
T PRK11486 21 VSGALIGIIALILAAAWLVKRLGFAPKRTGVRGLKISASASLGARERVVIVDVEDA 76 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcceEEEEeeccCCccEEEEEEECCE
No 100
>PF11677 DUF3273: Protein of unknown function (DUF3273); InterPro: IPR021691 Some members in this family of proteins are annotated as multi-transmembrane proteins however this cannot be confirmed. Currently this family has no known function.
Probab=23.44 E-value=1.7e+02 Score=26.04 Aligned_cols=39 Identities=31% Similarity=0.537 Sum_probs=29.4
Q ss_pred cCCCCCCCChhHHHHH--HHHHHHHHHHHHHHHHhhhcccC
Q 042254 25 QQRSPWHSPVPYLFGG--LAAMLGLIAFALLILACSYWKLS 63 (159)
Q Consensus 25 ~~~s~W~SPvPYLFgG--LA~MLgLIAvALLILACSy~K~s 63 (159)
.++.+=++|+.+.|.- |=.=++|..++|++|.|+||-..
T Consensus 6 ~~RGp~~~pf~~ff~~~~LR~Gf~lq~~~~~ll~i~y~a~G 46 (265)
T PF11677_consen 6 EGRGPSHTPFWGFFSSYNLRLGFLLQLLSLILLFISYWAFG 46 (265)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4566778999999976 33345567888889999999743
No 101
>PF15345 TMEM51: Transmembrane protein 51
Probab=23.38 E-value=44 Score=29.18 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=23.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 042254 27 RSPWHSPVPYLFGGLAAMLGLIAFALLILA 56 (159)
Q Consensus 27 ~s~W~SPvPYLFgGLA~MLgLIAvALLILA 56 (159)
...=.+-|-|.+.|-++||.|+++.|-|--
T Consensus 53 ~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~ 82 (233)
T PF15345_consen 53 LKSKTFSVAYVLVGSGVALLLLSICLSIRD 82 (233)
T ss_pred ccceeEEEEEehhhHHHHHHHHHHHHHHHH
Confidence 344456789999999999999998887754
No 102
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=23.32 E-value=1.2e+02 Score=23.97 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhcccC
Q 042254 48 IAFALLILACSYWKLS 63 (159)
Q Consensus 48 IAvALLILACSy~K~s 63 (159)
..++|.++-+.+.|.+
T Consensus 131 ~~~~L~~~G~~~~~~~ 146 (175)
T cd02437 131 VLAILFILGLVIGKIS 146 (175)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3344555555555543
No 103
>TIGR03363 VI_chp_8 type VI secretion-associated protein, ImpA family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=23.22 E-value=40 Score=29.73 Aligned_cols=9 Identities=78% Similarity=1.435 Sum_probs=7.7
Q ss_pred CCChhHHHH
Q 042254 31 HSPVPYLFG 39 (159)
Q Consensus 31 ~SPvPYLFg 39 (159)
|||||||.=
T Consensus 313 hSPvp~Ll~ 321 (353)
T TIGR03363 313 HSPVPYLIE 321 (353)
T ss_pred CCcHHHHHH
Confidence 799999964
No 104
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=23.15 E-value=1.2e+02 Score=17.47 Aligned_cols=7 Identities=43% Similarity=0.472 Sum_probs=3.2
Q ss_pred hHHHHHH
Q 042254 35 PYLFGGL 41 (159)
Q Consensus 35 PYLFgGL 41 (159)
-+++.|+
T Consensus 12 ~~~~~G~ 18 (34)
T TIGR01167 12 LLLLLGL 18 (34)
T ss_pred HHHHHHH
Confidence 3444454
No 105
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=22.88 E-value=1e+02 Score=23.78 Aligned_cols=17 Identities=41% Similarity=0.964 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhcccC
Q 042254 47 LIAFALLILACSYWKLS 63 (159)
Q Consensus 47 LIAvALLILACSy~K~s 63 (159)
+|+++|++|...+|+.-
T Consensus 54 fi~~tl~~lg~a~~~~y 70 (116)
T PF02411_consen 54 FIALTLLFLGYAFWRLY 70 (116)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68889999999988754
No 106
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=22.76 E-value=1e+02 Score=17.84 Aligned_cols=11 Identities=45% Similarity=0.573 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 042254 47 LIAFALLILAC 57 (159)
Q Consensus 47 LIAvALLILAC 57 (159)
|+.+.|+.|+.
T Consensus 10 l~~~gl~~l~~ 20 (25)
T PF07589_consen 10 LLGLGLLGLAF 20 (25)
T ss_pred HHHHHHHHHHH
Confidence 33334444444
No 107
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=22.67 E-value=1.1e+02 Score=22.55 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hh-hcccCCC
Q 042254 37 LFGGLAAMLGLIAFALLILA-CS-YWKLSDS 65 (159)
Q Consensus 37 LFgGLA~MLgLIAvALLILA-CS-y~K~ss~ 65 (159)
|.....+++.+.+++|++.+ .+ ||+.+..
T Consensus 3 ~q~~~~~~~~~~~~~~liva~~~~~W~~~~~ 33 (166)
T PF00822_consen 3 LQLAGFIVSSLGWLALLIVATATPYWRVSNV 33 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHheEecC
Confidence 44455556666677665555 45 8987654
No 108
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=22.45 E-value=70 Score=25.91 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhcccC
Q 042254 46 GLIAFALLILACSYWKLS 63 (159)
Q Consensus 46 gLIAvALLILACSy~K~s 63 (159)
.||.+.|++.+|+-.+..
T Consensus 5 ~~l~l~lll~~C~~~~~~ 22 (216)
T PF11153_consen 5 LLLLLLLLLTGCSTNPNE 22 (216)
T ss_pred HHHHHHHHHHhhcCCCcc
Confidence 345589999999987654
No 109
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.32 E-value=1e+02 Score=20.21 Aligned_cols=33 Identities=27% Similarity=0.138 Sum_probs=19.1
Q ss_pred ccccCCCCCCCChhH-HHHHHHHHHHHHHHHHHH
Q 042254 22 VATQQRSPWHSPVPY-LFGGLAAMLGLIAFALLI 54 (159)
Q Consensus 22 ~~~~~~s~W~SPvPY-LFgGLA~MLgLIAvALLI 54 (159)
++.-.+..|+.+.|. ++..+++.+|+|...|+.
T Consensus 6 ~V~v~~~~~~~~~pl~l~il~~f~~G~llg~l~~ 39 (68)
T PF06305_consen 6 PVTVNFLFGQFPLPLGLLILIAFLLGALLGWLLS 39 (68)
T ss_pred eEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHH
Confidence 445566778887774 444455556655554433
No 110
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=22.31 E-value=1.5e+02 Score=22.83 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042254 34 VPYLFGGLAAMLGLIAFALLILACSYW 60 (159)
Q Consensus 34 vPYLFgGLA~MLgLIAvALLILACSy~ 60 (159)
+|+--..||+.|.++...||++.|--+
T Consensus 39 ~pwK~I~la~~Lli~G~~li~~g~l~~ 65 (115)
T PF05915_consen 39 IPWKSIALAVFLLIFGTVLIIIGLLLF 65 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999988887644
No 111
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=22.27 E-value=1.6e+02 Score=25.39 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=10.6
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHH
Q 042254 24 TQQRSPWHSPVPYLFGGLAAMLGLI 48 (159)
Q Consensus 24 ~~~~s~W~SPvPYLFgGLA~MLgLI 48 (159)
..+.+.|. +-=++++|+++++||
T Consensus 60 ~~~~s~~~--l~qmi~aL~~VI~Li 82 (219)
T PRK13415 60 ASSVSAFD--FVKLIGATLFVIFLI 82 (219)
T ss_pred CCCccHHH--HHHHHHHHHHHHHHH
Confidence 34455554 334455554444443
No 112
>PHA02337 putative high light inducible protein
Probab=22.25 E-value=1.9e+02 Score=18.55 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=15.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 042254 33 PVPYLFGGLAAMLGLIAFALLILA 56 (159)
Q Consensus 33 PvPYLFgGLA~MLgLIAvALLILA 56 (159)
|-+=.+-|-.+|+|+++ +|++-.
T Consensus 3 ~~aE~~NGRlAMiGfv~-~~~~e~ 25 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVA-AVGAYA 25 (35)
T ss_pred cHHHHHhhHHHHHHHHH-HHHHHH
Confidence 44556779999999988 444433
No 113
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=22.16 E-value=2.3e+02 Score=19.19 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhhcccCCCCC
Q 042254 46 GLIAFALLILACSYWKLSDSRD 67 (159)
Q Consensus 46 gLIAvALLILACSy~K~ss~~d 67 (159)
..|.+-|.++.|.--|.-+|++
T Consensus 10 ~iv~~lLg~~I~~~~K~ygYkh 31 (50)
T PF12606_consen 10 FIVMGLLGLSICTTLKAYGYKH 31 (50)
T ss_pred HHHHHHHHHHHHHHhhcccccc
Confidence 3344456778888888777754
No 114
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=22.01 E-value=77 Score=26.41 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 042254 42 AAMLGLIAFALLILACSY 59 (159)
Q Consensus 42 A~MLgLIAvALLILACSy 59 (159)
.++|+||.++|||+.=.+
T Consensus 6 l~il~l~GvlLli~s~~f 23 (186)
T TIGR02830 6 LLVLLLIGLLLLIVSSFF 23 (186)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 456778888888876443
No 115
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=21.96 E-value=1.1e+02 Score=25.70 Aligned_cols=25 Identities=32% Similarity=0.576 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 042254 34 VPYLFGGLAAMLGLIAFALLILACS 58 (159)
Q Consensus 34 vPYLFgGLA~MLgLIAvALLILACS 58 (159)
.||-|.-.+.++|+|.+.++.+.|.
T Consensus 24 lP~af~~~G~~~g~i~l~~~~~~s~ 48 (409)
T PF01490_consen 24 LPYAFAQSGWVLGIILLVLVALLSY 48 (409)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 7999987777777766655555443
No 116
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=21.73 E-value=1.5e+02 Score=26.92 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 042254 41 LAAMLGLIAFALLILACSYW 60 (159)
Q Consensus 41 LA~MLgLIAvALLILACSy~ 60 (159)
+++|++|+..-||+-+||-.
T Consensus 6 ~~~i~~lll~lllva~C~~s 25 (310)
T COG4594 6 TAIILTLLLLLLLVAACSSS 25 (310)
T ss_pred hHHHHHHHHHHHHHHHhcCc
Confidence 57889999999999999864
No 117
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=21.42 E-value=1.6e+02 Score=21.46 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhhh
Q 042254 45 LGLIAFALLILACSY 59 (159)
Q Consensus 45 LgLIAvALLILACSy 59 (159)
++|++.+++.++|..
T Consensus 62 ~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 62 AGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555543
No 118
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.04 E-value=1.1e+02 Score=26.65 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHH
Q 042254 34 VPYLFGGLAAMLGL-IAFALLILA 56 (159)
Q Consensus 34 vPYLFgGLA~MLgL-IAvALLILA 56 (159)
.-.+|-|+.+||++ +.|+|+.+.
T Consensus 147 ~k~~~~gi~aml~Vf~LF~lvmt~ 170 (230)
T PF03904_consen 147 QKSMYKGIGAMLFVFMLFALVMTI 170 (230)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34688899999887 566777665
No 119
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.90 E-value=1.6e+02 Score=23.11 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 042254 36 YLFGGLAAMLGLIAFALLILACSYWKLSDS 65 (159)
Q Consensus 36 YLFgGLA~MLgLIAvALLILACSy~K~ss~ 65 (159)
.+||-+|.++|+|++.+.++-=-++|.+..
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~ 98 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRKKSSSD 98 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 356666666667666666666666766543
No 120
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.82 E-value=1.2e+02 Score=30.86 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 042254 34 VPYLFGGLAAMLGLIAFALLILACS 58 (159)
Q Consensus 34 vPYLFgGLA~MLgLIAvALLILACS 58 (159)
+=||.+-|+.|+.|+-+-|.+|.|-
T Consensus 272 T~fLl~ILG~~~livl~lL~vLl~y 296 (807)
T PF10577_consen 272 TVFLLAILGGTALIVLILLCVLLCY 296 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677776666655555555554
No 121
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=20.81 E-value=41 Score=31.15 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=23.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 042254 29 PWHSPVPYLFGGLAAMLGLIAFALLILA 56 (159)
Q Consensus 29 ~W~SPvPYLFgGLA~MLgLIAvALLILA 56 (159)
.-.+--||+.+.+..|+|.|.|.++.|-
T Consensus 382 fI~~A~PYyas~~s~m~gf~lF~~~fL~ 409 (423)
T PF03345_consen 382 FITNAYPYYASAFSMMIGFFLFVFVFLY 409 (423)
T ss_pred ccccccHHHHHHHHHHHHHHhheeeEEE
Confidence 3446679999999999999998887775
No 122
>PHA03231 glycoprotein BALF4; Provisional
Probab=20.79 E-value=80 Score=32.04 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=24.6
Q ss_pred cccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042254 21 TVATQQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYW 60 (159)
Q Consensus 21 ~~~~~~~s~W~SPvPYLFgGLA~MLgLIAvALLILACSy~ 60 (159)
+-+.+-.+..+-| ||||+.+|.+||+-++|+.-.+|
T Consensus 691 SiVsG~~sFl~NP----FGg~~iillvia~vv~v~l~~rr 726 (829)
T PHA03231 691 SIVSGVISFLKNP----FGGLAIGLLVIAVLVAVFLAYRR 726 (829)
T ss_pred HHHHHHHHHhcCc----hHHHHHHHHHHHHhhhhhHHHHH
Confidence 3334445777777 89999988888877666554444
No 123
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=20.77 E-value=77 Score=20.76 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhhcc
Q 042254 45 LGLIAFALLILACSYWK 61 (159)
Q Consensus 45 LgLIAvALLILACSy~K 61 (159)
+++|++.|+++.|-.||
T Consensus 21 V~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYR 37 (40)
T ss_pred hHHHHHHHHHHhheEEe
Confidence 56677777666665444
No 124
>PF04961 FTCD_C: Formiminotransferase-cyclodeaminase; InterPro: IPR007044 Enzymes containing the cyclodeaminase domain function in channeling one-carbon units to the folate pool. In most cases, this domain catalyses the cyclisation of formimidoyltetrahydrofolate to methenyltetrahydrofolate as shown in reaction (1). In the methylotrophic bacterium Methylobacterium extorquens, however, it catalyses the interconversion of formyltetrahydrofolate and methylenetetrahydrofolate [],as shown in reaction (2) (1) 5-formimidoyltetrahydrofolate = 5,10-methenyltetrahydrofolate + NH(3) (2) 10- formyltetrahydrofolate = 5,10-methenyltetrahydrofolate + H(2)O In prokaryotes, this domain mostly occurs on its own, while in eukaryotes it is fused to a glutamate formiminotransferase domain (which catalyses the previous step in the pathway) to form the bifunctional enzyme formiminotransferase-cyclodeaminase []. The eukaryotic enzyme is a circular tetramer of homodimers [], while the prokaryotic enzyme is a dimer [, ]. The crystal structure of the cyclodeaminase enzyme (Q9X1P6 from SWISSPROT) from Thermaotogoa maritima has been studied []. It is a homodimer, where each monomer is composed of six alpha helices arranged in an up and down helical bundle, forming a novel fold. The location of the active site is not known, but sequence alignments revealed two clusters of conserved residues located in a deep pocket within the dimmer interface. This pocket was large enough to accommodate the reaction product and it was postulated that this is the active site.; GO: 0003824 catalytic activity, 0044237 cellular metabolic process; PDB: 2PFD_C 1O5H_B.
Probab=20.69 E-value=1.2e+02 Score=24.57 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 042254 39 GGLAAMLGLIAFALLILACSYW 60 (159)
Q Consensus 39 gGLA~MLgLIAvALLILACSy~ 60 (159)
|+.+++.|-++.||+.++|-+-
T Consensus 20 GsaaAl~gAlgaaL~~Mv~~lT 41 (184)
T PF04961_consen 20 GSAAALSGALGAALGSMVANLT 41 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6678999999999999999754
No 125
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=20.66 E-value=89 Score=24.61 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 042254 43 AMLGLIAFALLILACSY 59 (159)
Q Consensus 43 ~MLgLIAvALLILACSy 59 (159)
+++++|++||+...-+-
T Consensus 10 lLi~vIglAL~aFIv~d 26 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGD 26 (145)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35567777777666553
No 126
>COG5042 NUP Purine nucleoside permease [Nucleotide transport and metabolism]
Probab=20.50 E-value=52 Score=30.15 Aligned_cols=24 Identities=29% Similarity=-0.003 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 042254 37 LFGGLAAMLGLIAFALLILACSYW 60 (159)
Q Consensus 37 LFgGLA~MLgLIAvALLILACSy~ 60 (159)
+-.||.+|+||-|.|..+-.|++.
T Consensus 13 va~~lll~~g~~a~A~~~~~k~v~ 36 (349)
T COG5042 13 VALGLLLALGLGASAHAQAKKPVP 36 (349)
T ss_pred HHHHHHHHhcccccccccccCCCC
Confidence 334556666666666655555443
No 127
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.28 E-value=2.5e+02 Score=19.70 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=13.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHH
Q 042254 26 QRSPWHSPVPYLFGGLAAMLGLIA 49 (159)
Q Consensus 26 ~~s~W~SPvPYLFgGLA~MLgLIA 49 (159)
+...+.++-.++.+.+.+.+||+.
T Consensus 32 ~~~~~~~~r~~~~~~~~~v~gl~l 55 (82)
T PF11239_consen 32 GRPRRPSRRRRVLGVLLVVVGLAL 55 (82)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHH
Confidence 344555555556666655555433
No 128
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=20.26 E-value=73 Score=27.06 Aligned_cols=14 Identities=57% Similarity=0.864 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhh
Q 042254 45 LGLIAFALLILACS 58 (159)
Q Consensus 45 LgLIAvALLILACS 58 (159)
-+||+|||..|+|-
T Consensus 85 t~lI~~alAfl~Cv 98 (186)
T PF06387_consen 85 TRLIAFALAFLGCV 98 (186)
T ss_pred hHHHHHHHHHHHHH
Confidence 36788888888887
No 129
>PF04964 Flp_Fap: Flp/Fap pilin component; InterPro: IPR007047 This entry is for the fimbriae associated protein Flp/Fap pilin component.
Probab=20.13 E-value=92 Score=20.18 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHH
Q 042254 42 AAMLGLIAFALLIL 55 (159)
Q Consensus 42 A~MLgLIAvALLIL 55 (159)
|+|++||+++++.-
T Consensus 14 ali~alia~~ii~~ 27 (46)
T PF04964_consen 14 ALIAALIAVAIIAA 27 (46)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777777643
Done!