Query 042254
Match_columns 159
No_of_seqs 98 out of 100
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 07:13:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 82.1 3.9 0.00013 27.2 5.7 33 33-65 9-44 (54)
2 2jwa_A Receptor tyrosine-prote 70.4 7 0.00024 25.1 4.2 32 31-62 8-39 (44)
3 2knc_B Integrin beta-3; transm 64.2 5.4 0.00018 27.8 3.0 28 32-59 6-33 (79)
4 4ds7_E Spindle POLE BODY compo 58.7 3.8 0.00013 27.7 1.3 15 48-62 13-27 (55)
5 2k1a_A Integrin alpha-IIB; sin 56.1 14 0.00048 23.3 3.6 25 32-56 6-30 (42)
6 2l8s_A Integrin alpha-1; trans 51.5 13 0.00043 24.8 3.0 31 34-64 7-40 (54)
7 2vpz_C Hypothetical membrane s 51.0 16 0.00055 29.2 4.1 24 25-48 139-162 (253)
8 2k9j_B Integrin beta-3; transm 48.9 26 0.00088 21.9 4.0 26 32-57 5-30 (43)
9 1afo_A Glycophorin A; integral 48.5 15 0.00053 23.3 2.9 24 37-60 13-36 (40)
10 2yew_B E1 envelope glycoprotei 47.3 9.2 0.00031 34.5 2.3 19 37-58 401-419 (427)
11 2lat_A Dolichyl-diphosphooligo 43.3 24 0.00081 21.9 3.1 18 38-55 7-24 (37)
12 1rkl_A Dolichyl-diphosphooligo 42.7 19 0.00065 22.3 2.6 17 39-55 8-24 (36)
13 2lk9_A Bone marrow stromal ant 41.8 25 0.00085 21.8 3.0 26 37-62 5-30 (35)
14 1cd1_A CD1, MCD1D.1; immunolog 41.4 6.3 0.00021 32.2 0.3 9 57-65 303-311 (315)
15 3j0f_E E1 envelope glycoprotei 38.6 13 0.00045 33.6 1.9 29 25-59 404-432 (439)
16 2k9y_A Ephrin type-A receptor 34.1 40 0.0014 19.9 3.0 19 31-51 9-27 (41)
17 2qzu_A Putative sulfatase YIDJ 33.9 25 0.00087 29.5 2.9 43 44-103 1-43 (491)
18 3j0c_A E1 envelope glycoprotei 33.4 14 0.00047 33.5 1.2 20 36-58 412-431 (442)
19 1zza_A Stannin, AG8_1; helix, 33.2 1.3E+02 0.0044 21.7 6.1 27 31-60 8-35 (90)
20 2jo1_A Phospholemman; FXYD1, N 32.9 88 0.003 22.0 5.1 19 38-56 18-36 (72)
21 3arc_M Photosystem II reaction 30.6 23 0.00079 22.0 1.6 12 45-56 6-17 (36)
22 2l2t_A Receptor tyrosine-prote 29.8 92 0.0032 19.7 4.4 30 31-60 6-36 (44)
23 2kog_A Vesicle-associated memb 25.7 62 0.0021 23.8 3.4 28 29-58 92-119 (119)
24 2l6w_A Beta-type platelet-deri 30.8 15 0.00052 23.2 0.0 27 39-65 12-38 (39)
25 1iij_A ERBB-2 receptor protein 22.8 25 0.00087 21.5 0.7 31 31-61 4-34 (35)
26 2ks1_B Epidermal growth factor 20.9 62 0.0021 20.4 2.2 25 32-56 8-33 (44)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=82.13 E-value=3.9 Score=27.23 Aligned_cols=33 Identities=18% Similarity=0.463 Sum_probs=19.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH---HhhhcccCCC
Q 042254 33 PVPYLFGGLAAMLGLIAFALLIL---ACSYWKLSDS 65 (159)
Q Consensus 33 PvPYLFgGLA~MLgLIAvALLIL---ACSy~K~ss~ 65 (159)
++|+-..-++++.||+-++|+++ -|-+.|+...
T Consensus 9 ~vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 45555555666666666665554 4666665443
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=70.39 E-value=7 Score=25.08 Aligned_cols=32 Identities=9% Similarity=0.202 Sum_probs=23.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042254 31 HSPVPYLFGGLAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 31 ~SPvPYLFgGLA~MLgLIAvALLILACSy~K~ 62 (159)
.||+|-.-+|..-+|.++.++|+++.+-+||.
T Consensus 8 ~~~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 8 ASPLTSIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhheehhh
Confidence 58999888888887766666666666666553
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=64.24 E-value=5.4 Score=27.82 Aligned_cols=28 Identities=18% Similarity=0.020 Sum_probs=18.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 042254 32 SPVPYLFGGLAAMLGLIAFALLILACSY 59 (159)
Q Consensus 32 SPvPYLFgGLA~MLgLIAvALLILACSy 59 (159)
.|.+.+...++++.|++.+.|++|.|-+
T Consensus 6 ~~~n~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 6 KGPDILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777777666653
No 4
>4ds7_E Spindle POLE BODY component 110; protein binding, metal binding, structura; 2.15A {Saccharomyces cerevisiae S288C}
Probab=58.68 E-value=3.8 Score=27.73 Aligned_cols=15 Identities=47% Similarity=0.605 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhccc
Q 042254 48 IAFALLILACSYWKL 62 (159)
Q Consensus 48 IAvALLILACSy~K~ 62 (159)
=+|||+||+|-+-|.
T Consensus 13 KTVAL~VlaciRMk~ 27 (55)
T 4ds7_E 13 KTVALLVLACVRMKR 27 (55)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 479999999987664
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=56.14 E-value=14 Score=23.29 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=17.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 042254 32 SPVPYLFGGLAAMLGLIAFALLILA 56 (159)
Q Consensus 32 SPvPYLFgGLA~MLgLIAvALLILA 56 (159)
.++|.-..-++++.||+-++|++++
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~ 30 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLA 30 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667777788777776654
No 6
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=51.47 E-value=13 Score=24.85 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH---HhhhcccCC
Q 042254 34 VPYLFGGLAAMLGLIAFALLIL---ACSYWKLSD 64 (159)
Q Consensus 34 vPYLFgGLA~MLgLIAvALLIL---ACSy~K~ss 64 (159)
+|+-..-++++.||+-++|+++ -|-+.|+..
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 4544455566666666665554 466666543
No 7
>2vpz_C Hypothetical membrane spanning protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_C* 2vpw_C* 2vpy_C*
Probab=51.03 E-value=16 Score=29.18 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.1
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHH
Q 042254 25 QQRSPWHSPVPYLFGGLAAMLGLI 48 (159)
Q Consensus 25 ~~~s~W~SPvPYLFgGLA~MLgLI 48 (159)
..+..||||+|.+|..-|+..|.-
T Consensus 139 ~~~P~W~t~lp~~Fl~sa~~sG~a 162 (253)
T 2vpz_C 139 LNRPLWNGLMAGLFPLTALVLALG 162 (253)
T ss_dssp TTSTTSCTTHHHHHHHHHHHHHHH
T ss_pred cCcccccchHHHHHHHHHHHHHHH
Confidence 458889999999999888877764
No 8
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=48.92 E-value=26 Score=21.86 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=17.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHh
Q 042254 32 SPVPYLFGGLAAMLGLIAFALLILAC 57 (159)
Q Consensus 32 SPvPYLFgGLA~MLgLIAvALLILAC 57 (159)
.|.+.+...++.+.|++.+-|++|.+
T Consensus 5 ~~~n~~~Iv~gvi~~ivliGl~lLli 30 (43)
T 2k9j_B 5 KGPDILVVLLSVMGAILLIGLAALLI 30 (43)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEeehHHHHHHHHHHHHHHHHHH
Confidence 56677777777777766666666554
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=48.45 E-value=15 Score=23.33 Aligned_cols=24 Identities=25% Similarity=0.111 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 042254 37 LFGGLAAMLGLIAFALLILACSYW 60 (159)
Q Consensus 37 LFgGLA~MLgLIAvALLILACSy~ 60 (159)
...-|++|-|+|..-|+|--|.++
T Consensus 13 ~lII~~vmaGiIG~IllI~y~I~r 36 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILLISYGIRR 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999998888765
No 10
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=47.34 E-value=9.2 Score=34.51 Aligned_cols=19 Identities=11% Similarity=0.294 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 042254 37 LFGGLAAMLGLIAFALLILACS 58 (159)
Q Consensus 37 LFgGLA~MLgLIAvALLILACS 58 (159)
||||.+ .||+++||||+|+
T Consensus 401 l~gG~~---~~~~i~~~i~~~v 419 (427)
T 2yew_B 401 TTSGPL---TILVVAIIVVVVV 419 (427)
T ss_dssp GGHHHH---HHHHHHHHHHHHH
T ss_pred HhcCch---HHHHHHHHHHHHh
Confidence 899988 4667777777776
No 11
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=43.31 E-value=24 Score=21.95 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042254 38 FGGLAAMLGLIAFALLIL 55 (159)
Q Consensus 38 FgGLA~MLgLIAvALLIL 55 (159)
+.-||-.||+.++.|+||
T Consensus 7 L~~lan~lG~~~~~LIVl 24 (37)
T 2lat_A 7 LAIFANMLGVSLFLLVVL 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356788888888888776
No 12
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=42.67 E-value=19 Score=22.29 Aligned_cols=17 Identities=24% Similarity=0.677 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042254 39 GGLAAMLGLIAFALLIL 55 (159)
Q Consensus 39 gGLA~MLgLIAvALLIL 55 (159)
.-||-.||+.++.|+||
T Consensus 8 ~~lan~lG~~~~~LIvl 24 (36)
T 1rkl_A 8 NSLAITFGIVMMTLIVI 24 (36)
T ss_dssp GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35778888888888776
No 13
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=41.80 E-value=25 Score=21.79 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 042254 37 LFGGLAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 37 LFgGLA~MLgLIAvALLILACSy~K~ 62 (159)
|..|.++.+-|+.|+|.++.--|-+.
T Consensus 5 L~lg~Gvl~LLviV~LgV~LI~f~~k 30 (35)
T 2lk9_A 5 LLLGIGILVLLIIVILGVPLIIFTIK 30 (35)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred eeecccHHHHHHHHHhcchheEEeee
Confidence 45788999999999999887777653
No 14
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=41.37 E-value=6.3 Score=32.16 Aligned_cols=9 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred hhhcccCCC
Q 042254 57 CSYWKLSDS 65 (159)
Q Consensus 57 CSy~K~ss~ 65 (159)
|-|||..++
T Consensus 303 ~~~~~~~~~ 311 (315)
T 1cd1_A 303 YIWRRRSAY 311 (315)
T ss_dssp ---------
T ss_pred hheehhcCC
Confidence 344666555
No 15
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=38.58 E-value=13 Score=33.64 Aligned_cols=29 Identities=38% Similarity=0.794 Sum_probs=18.7
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 042254 25 QQRSPWHSPVPYLFGGLAAMLGLIAFALLILACSY 59 (159)
Q Consensus 25 ~~~s~W~SPvPYLFgGLA~MLgLIAvALLILACSy 59 (159)
..-|.| +==|+||.+ .||+++||||+|+-
T Consensus 404 ~Taw~W---~~~l~gG~~---~~~~i~~~i~~~v~ 432 (439)
T 3j0f_E 404 KTSWSW---LFALFGGAS---SLLIIGLMIFACSM 432 (439)
T ss_pred hhHHHH---HHHHhcccH---HHHHHHHHHHHHhh
Confidence 344555 345677776 56777888888763
No 16
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=34.07 E-value=40 Score=19.87 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=9.5
Q ss_pred CCChhHHHHHHHHHHHHHHHH
Q 042254 31 HSPVPYLFGGLAAMLGLIAFA 51 (159)
Q Consensus 31 ~SPvPYLFgGLA~MLgLIAvA 51 (159)
++.++-+-+|.. .|++.++
T Consensus 9 ~~~~~~I~~~vv--~Gv~ll~ 27 (41)
T 2k9y_A 9 GSGNLAVIGGVA--VGVVLLL 27 (41)
T ss_dssp CCSSTHHHHHHH--HHHHHHH
T ss_pred CCceEEEEeehh--HHHHHHH
Confidence 455565555443 4444444
No 17
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides fragilis}
Probab=33.88 E-value=25 Score=29.54 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCcccCCCCCCCcccCCccccCccEEEEecCCCCCccc
Q 042254 44 MLGLIAFALLILACSYWKLSDSRDIESGDKGQEGDAANSVKVYEEKILVIMAGDEKPTFL 103 (159)
Q Consensus 44 MLgLIAvALLILACSy~K~ss~~d~e~~~~~~~~~~~~~~~~~EpKIvVIMAGDe~PTfL 103 (159)
|+.+|.+++|.+++|--..+.. + ....|+||+||+=|-...+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~a~-------~----------~~~~PNIv~I~~Ddl~~~~l 43 (491)
T 2qzu_A 1 MKNIIPQALLTMPILSTGLQAQ-------E----------KQPTPNLVFIMADQYRGDAI 43 (491)
T ss_dssp -----------------CCSCC-------C----------CCSSCEEEEEEETTCCTTCC
T ss_pred CcchHhHHHHHHHhhccccccc-------c----------cCCCCCEEEEEeCCCCccch
Confidence 6777777777766543222111 0 11248999999866555444
No 18
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=33.35 E-value=14 Score=33.49 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 042254 36 YLFGGLAAMLGLIAFALLILACS 58 (159)
Q Consensus 36 YLFgGLA~MLgLIAvALLILACS 58 (159)
=|+||.+ .||+++||||.|+
T Consensus 412 ~l~GG~~---~~~~i~~~~~~~v 431 (442)
T 3j0c_A 412 SLLGGSA---VIIIIGLVLATIV 431 (442)
T ss_dssp TTSSHHH---HHHHHHHHHHHHH
T ss_pred HHhcccH---HHHHHHHHHHHHH
Confidence 3677776 4556666666665
No 19
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=33.17 E-value=1.3e+02 Score=21.71 Aligned_cols=27 Identities=41% Similarity=0.616 Sum_probs=14.2
Q ss_pred CCChhHHHHHHHHHHHHHHHH-HHHHHhhhc
Q 042254 31 HSPVPYLFGGLAAMLGLIAFA-LLILACSYW 60 (159)
Q Consensus 31 ~SPvPYLFgGLA~MLgLIAvA-LLILACSy~ 60 (159)
|||+- |-.-+++.|||+| |-+|.|-.|
T Consensus 8 hsptt---gvvtv~viliavaalg~li~gcw 35 (90)
T 1zza_A 8 HSPTT---GVVTVIVILIAIAALGALILGCW 35 (90)
T ss_dssp TTTHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCc---ceEEehhHHHHHHHHHHHHHHHH
Confidence 56664 3344555667664 334555444
No 20
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=32.87 E-value=88 Score=21.99 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042254 38 FGGLAAMLGLIAFALLILA 56 (159)
Q Consensus 38 FgGLA~MLgLIAvALLILA 56 (159)
.|||.+-..|.++.++||.
T Consensus 18 iGGLifA~vLfi~GI~iil 36 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 4555554444444455544
No 21
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=30.57 E-value=23 Score=22.01 Aligned_cols=12 Identities=67% Similarity=0.955 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 042254 45 LGLIAFALLILA 56 (159)
Q Consensus 45 LgLIAvALLILA 56 (159)
+|+||.+|.||.
T Consensus 6 l~fiAt~Lfi~i 17 (36)
T 3arc_M 6 LGLIATALFVLV 17 (36)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 22
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=29.83 E-value=92 Score=19.71 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=14.7
Q ss_pred CCChhHHHHHHHH-HHHHHHHHHHHHHhhhc
Q 042254 31 HSPVPYLFGGLAA-MLGLIAFALLILACSYW 60 (159)
Q Consensus 31 ~SPvPYLFgGLA~-MLgLIAvALLILACSy~ 60 (159)
.|++|-+-+|.-. ++++.+++|++..+-++
T Consensus 6 ~s~~~aIA~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEeehHHHHHHHHHHHHHHHHhhh
Confidence 4566666666544 44444444444433333
No 23
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=25.72 E-value=62 Score=23.75 Aligned_cols=28 Identities=11% Similarity=0.295 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 042254 29 PWHSPVPYLFGGLAAMLGLIAFALLILACS 58 (159)
Q Consensus 29 ~W~SPvPYLFgGLA~MLgLIAvALLILACS 58 (159)
-|+-=-+|++.|+.+++ |-+.+++.+||
T Consensus 92 wwkn~K~~iii~~iv~i--ii~iIi~~~c~ 119 (119)
T 2kog_A 92 WWKNLKMMIILGVICAI--ILIIIIVYFST 119 (119)
T ss_dssp SCHHHHHHHHHHHHHHH--HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH--HHHHhhhheeC
Confidence 36666677776655544 33344556775
No 24
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=30.84 E-value=15 Score=23.20 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCC
Q 042254 39 GGLAAMLGLIAFALLILACSYWKLSDS 65 (159)
Q Consensus 39 gGLA~MLgLIAvALLILACSy~K~ss~ 65 (159)
.|+.+.+.++-+.|+||..=|+|...|
T Consensus 12 ~avlal~vi~iisLIiLi~~w~qKPrY 38 (39)
T 2l6w_A 12 SAILALVVLTIISLIILIMLWQKKPRY 38 (39)
Confidence 344455566778899999888876554
No 25
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=22.77 E-value=25 Score=21.53 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=19.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 042254 31 HSPVPYLFGGLAAMLGLIAFALLILACSYWK 61 (159)
Q Consensus 31 ~SPvPYLFgGLA~MLgLIAvALLILACSy~K 61 (159)
.||+|-+-.|..-.|.++-++|.+..+=+||
T Consensus 4 ~s~~~sIaagVvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 4 ASPVTFIIATVVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred CCCCcEeHHHHHHHHHHHHHHHHhheEEeec
Confidence 4677877777666555555566555554443
No 26
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.87 E-value=62 Score=20.43 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=10.4
Q ss_pred CChhHHHHHHHH-HHHHHHHHHHHHH
Q 042254 32 SPVPYLFGGLAA-MLGLIAFALLILA 56 (159)
Q Consensus 32 SPvPYLFgGLA~-MLgLIAvALLILA 56 (159)
|++|-+-+|... +++++.++|++..
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~ 33 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGL 33 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHH
Confidence 444444444433 3344444443333
Done!