Query 042254
Match_columns 159
No_of_seqs 98 out of 100
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 07:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042254.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042254hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 35.1 8.3 0.0006 22.6 1.6 14 45-58 6-19 (36)
2 d1ijda_ f.3.1.1 (A:) Light-har 20.8 48 0.0035 20.0 3.3 20 34-53 16-35 (46)
3 d2axth1 f.23.33.1 (H:2-65) Pho 19.0 49 0.0036 21.2 3.2 22 41-62 30-51 (64)
4 d1nkza_ f.3.1.1 (A:) Light-har 18.3 57 0.0041 20.2 3.3 20 34-53 16-35 (53)
5 d1o5ha_ a.191.1.1 (A:) Hypothe 14.3 65 0.0047 23.4 3.4 22 39-60 24-45 (200)
6 d2heqa1 b.34.20.1 (A:1-71) Unc 13.0 34 0.0025 22.0 1.2 14 94-107 1-14 (71)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 12.6 1.4E+02 0.01 18.9 4.3 22 40-61 34-55 (100)
8 d1o4va_ c.23.8.1 (A:) N5-CAIR 12.4 34 0.0025 25.1 1.2 11 88-98 1-11 (169)
9 d1rzhh2 f.23.10.1 (H:11-35) Ph 12.1 1.1E+02 0.0077 16.4 2.9 17 39-55 3-19 (26)
10 d1ppjd2 f.23.11.1 (D:196-241) 12.0 89 0.0065 18.3 2.9 17 39-55 9-25 (46)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=35.06 E-value=8.3 Score=22.60 Aligned_cols=14 Identities=64% Similarity=0.797 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhh
Q 042254 45 LGLIAFALLILACS 58 (159)
Q Consensus 45 LgLIAvALLILACS 58 (159)
||+||-+|.||.=+
T Consensus 6 Lg~iAt~LFilvPt 19 (36)
T d2axtm1 6 LGLIATALFVLVPS 19 (36)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777666533
No 2
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=20.79 E-value=48 Score=20.01 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 042254 34 VPYLFGGLAAMLGLIAFALL 53 (159)
Q Consensus 34 vPYLFgGLA~MLgLIAvALL 53 (159)
+|-|+|+.|++-.++=+|+|
T Consensus 16 ~Pl~LgsVav~s~~VH~avl 35 (46)
T d1ijda_ 16 LPLMLGAVAITALLVHAAVL 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 56777777766666555554
No 3
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.99 E-value=49 Score=21.19 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q 042254 41 LAAMLGLIAFALLILACSYWKL 62 (159)
Q Consensus 41 LA~MLgLIAvALLILACSy~K~ 62 (159)
+++.|+|++|-|+|+.=-|..+
T Consensus 30 Mgv~m~Lf~vfl~iiLeiYNss 51 (64)
T d2axth1 30 MAVFMGLFLVFLLIILEIYNST 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 5678899999999998888654
No 4
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=18.30 E-value=57 Score=20.19 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 042254 34 VPYLFGGLAAMLGLIAFALL 53 (159)
Q Consensus 34 vPYLFgGLA~MLgLIAvALL 53 (159)
+|-|+|..|++-.++=+|+|
T Consensus 16 ~Pl~LgsVav~s~~VH~avl 35 (53)
T d1nkza_ 16 IPALLGSVTVIAILVHLAIL 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 57777777766665555554
No 5
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga maritima [TaxId: 2336]}
Probab=14.35 E-value=65 Score=23.43 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 042254 39 GGLAAMLGLIAFALLILACSYW 60 (159)
Q Consensus 39 gGLA~MLgLIAvALLILACSy~ 60 (159)
|+.+++.|-++.||..++|-+-
T Consensus 24 GsaaAl~galg~aL~~MVa~lT 45 (200)
T d1o5ha_ 24 GAVGSVVGAMACALAEMVANFT 45 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6688899999999999999864
No 6
>d2heqa1 b.34.20.1 (A:1-71) Uncharacterized protein YorP {Bacillus subtilis [TaxId: 1423]}
Probab=13.02 E-value=34 Score=21.98 Aligned_cols=14 Identities=50% Similarity=0.897 Sum_probs=12.9
Q ss_pred ecCCCCCccccccC
Q 042254 94 MAGDEKPTFLATPV 107 (159)
Q Consensus 94 MAGDe~PTfLA~P~ 107 (159)
||||.-|.|..-|+
T Consensus 1 magdplpkywsypv 14 (71)
T d2heqa1 1 MAGDPLPKYWSYPV 14 (71)
T ss_dssp CCCCCCCSSCCSCT
T ss_pred CCCCCCcccccccc
Confidence 89999999998886
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.60 E-value=1.4e+02 Score=18.91 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 042254 40 GLAAMLGLIAFALLILACSYWK 61 (159)
Q Consensus 40 GLA~MLgLIAvALLILACSy~K 61 (159)
.++++++++...+++..|.+++
T Consensus 34 ~i~~~I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 34 VIIAAITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 3455555566666666665444
No 8
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=12.43 E-value=34 Score=25.08 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=8.1
Q ss_pred ccEEEEecCCC
Q 042254 88 EKILVIMAGDE 98 (159)
Q Consensus 88 pKIvVIMAGDe 98 (159)
|||+|||+|+.
T Consensus 1 PkV~Ii~Gs~S 11 (169)
T d1o4va_ 1 PRVGIIMGSDS 11 (169)
T ss_dssp CEEEEEESCGG
T ss_pred CeEEEEECcHh
Confidence 67788887764
No 9
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.13 E-value=1.1e+02 Score=16.38 Aligned_cols=17 Identities=35% Similarity=0.159 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042254 39 GGLAAMLGLIAFALLIL 55 (159)
Q Consensus 39 gGLA~MLgLIAvALLIL 55 (159)
..|+.-|.-|-+||||.
T Consensus 3 aslaiw~fw~ffalli~ 19 (26)
T d1rzhh2 3 ASLAIYSFWIFLAGLIY 19 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777788888874
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.03 E-value=89 Score=18.31 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042254 39 GGLAAMLGLIAFALLIL 55 (159)
Q Consensus 39 gGLA~MLgLIAvALLIL 55 (159)
.|+-+|+.|+.++++..
T Consensus 9 mG~Kv~~~l~~l~~l~y 25 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36677777765555443
Done!