BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042255
         (280 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MCS|A Chain A, Crystal Structure Of Putative Monooxygenase (Fn1347) From
           Fusobacterium Nucleatum Subsp. Nucleatum Atcc 25586 At
           2.55 A Resolution
 pdb|3MCS|B Chain B, Crystal Structure Of Putative Monooxygenase (Fn1347) From
           Fusobacterium Nucleatum Subsp. Nucleatum Atcc 25586 At
           2.55 A Resolution
          Length = 219

 Score = 28.5 bits (62), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 37  NHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLN 77
           NH +   F D ++QTK   A  KR  + VL ++N   GGL+
Sbjct: 176 NHRSAKYFKDYITQTKDXIAGKKRAELQVLKIENK--GGLD 214


>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
 pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
          Length = 278

 Score = 27.7 bits (60), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 35  LSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIG 74
           LS+   L+A  ++LSQ K++   N+R T   + ++N S+ 
Sbjct: 71  LSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVA 110


>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
           Mutant E254k
 pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
           Mutant E254k
          Length = 272

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 35  LSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIG 74
           LS+   L+A  ++LSQ K++   N+R T   + ++N S+ 
Sbjct: 74  LSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVA 113


>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
 pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
 pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
           (Reduced)
 pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
           (Reduced)
          Length = 272

 Score = 27.7 bits (60), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 35  LSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIG 74
           LS+   L+A  ++LSQ K++   N+R T   + ++N S+ 
Sbjct: 74  LSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVA 113


>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S.
           Cerevisiae Complexed With Atp
 pdb|3QB0|B Chain B, Crystal Structure Of Actin-Related Protein Arp4 From S.
           Cerevisiae Complexed With Atp
 pdb|3QB0|C Chain C, Crystal Structure Of Actin-Related Protein Arp4 From S.
           Cerevisiae Complexed With Atp
 pdb|3QB0|D Chain D, Crystal Structure Of Actin-Related Protein Arp4 From S.
           Cerevisiae Complexed With Atp
          Length = 498

 Score = 27.3 bits (59), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 41  LLAFSDLLSQTKLNEAINKRKTIT---VLAVDNSSIGGLNDRPVDEIKNIL 88
           L+  +DL+  + ++  ++ R T+    VL    SSI GL+DR + E+  IL
Sbjct: 391 LIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKIL 441


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,696,062
Number of Sequences: 62578
Number of extensions: 181351
Number of successful extensions: 332
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 7
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)