Query 042255
Match_columns 280
No_of_seqs 155 out of 474
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:26:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2335 Secreted and surface p 99.7 2.6E-17 5.6E-22 145.2 9.8 130 28-179 47-185 (187)
2 PF02469 Fasciclin: Fasciclin 99.6 5.2E-15 1.1E-19 119.3 6.8 119 39-175 1-128 (128)
3 smart00554 FAS1 Four repeated 99.1 9.5E-11 2.1E-15 91.1 6.5 92 64-176 1-99 (99)
4 KOG1437 Fasciclin and related 97.7 0.00019 4E-09 74.7 10.6 133 29-179 508-645 (682)
5 KOG1437 Fasciclin and related 96.7 0.0039 8.4E-08 65.2 7.1 83 28-114 373-457 (682)
6 COG5373 Predicted membrane pro 77.7 8.1 0.00017 41.9 7.6 44 235-278 94-144 (931)
7 PF07172 GRP: Glycine rich pro 73.1 2.3 4.9E-05 34.2 1.7 28 1-31 1-28 (95)
8 PF15249 GLTSCR1: Glioma tumor 41.4 13 0.00027 30.2 0.9 30 65-98 12-42 (109)
9 PHA03269 envelope glycoprotein 33.1 93 0.002 32.3 5.7 10 160-169 22-31 (566)
10 PF04625 DEC-1_N: DEC-1 protei 30.2 77 0.0017 31.2 4.3 7 176-182 100-106 (407)
No 1
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=2.6e-17 Score=145.23 Aligned_cols=130 Identities=18% Similarity=0.200 Sum_probs=105.1
Q ss_pred ccCHHHHHhcCCCcHHHHHHHHhcchHHHHhcCCCeEEEeeCCccccCCCC-------C--CHHHHHHHHhhcccccccC
Q 042255 28 GFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLND-------R--PVDEIKNILSVHVILDYYD 98 (280)
Q Consensus 28 a~NIt~iL~~~p~fStF~~LL~~T~L~~~Ln~~~~iTVfAPtN~Af~aL~~-------l--~~~~l~~lL~yHVl~~y~~ 98 (280)
..+|.+.-.++++|++|..+|+..+|.+.|++.+.+|||||+|+||.+|+. . +..+++++|.|||+.+.++
T Consensus 47 ~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~~ 126 (187)
T COG2335 47 RADIVESAANNPSFTTLVAALKAAGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKIT 126 (187)
T ss_pred hhHHHHHHccCcchHHHHHHHHhhhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCccc
Confidence 356777777899999999999999999999999999999999999999964 3 7889999999999999999
Q ss_pred hhhhccCCCCCceeeecccCCCCCCCCceEEEEeCCCCeEEEeCCCCCCCCceEEeeeeeecccceEEEEeCccccCCCC
Q 042255 99 MNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGL 178 (280)
Q Consensus 99 ~~~L~~l~~~~~ltTL~qatG~A~~~~G~vnvT~~~G~~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qVd~vLlP~~l 178 (280)
.++++... .+.|+ ++..++|...+|+ |.|. +++++..-.. -.|..||.||+||+||+.
T Consensus 127 ~~~l~~~~---~v~t~---------~G~~~~i~~~~~~-~~Vn--------~a~v~~~di~-a~NgvIhvID~Vl~Pp~~ 184 (187)
T COG2335 127 AADLKSSG---SVKTV---------QGADLKIKVTGGG-VYVN--------DATVTIADIN-ASNGVIHVIDKVLIPPMD 184 (187)
T ss_pred HHHhhccc---cceee---------cCceEEEEEcCCc-EEEe--------eeEEEeccEe-ccCcEEEEEeeeccCCCc
Confidence 99987522 25664 2345888776666 8875 3455544333 378999999999999986
Q ss_pred C
Q 042255 179 G 179 (280)
Q Consensus 179 f 179 (280)
.
T Consensus 185 ~ 185 (187)
T COG2335 185 L 185 (187)
T ss_pred c
Confidence 4
No 2
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.56 E-value=5.2e-15 Score=119.29 Aligned_cols=119 Identities=18% Similarity=0.302 Sum_probs=84.8
Q ss_pred CCcHHHHHHHHhcchHHHH-hcCCCeEEEeeCCccccCCCC-------CCHHHHHHHHhhcccccccChhhhccCCCCCc
Q 042255 39 PNLLAFSDLLSQTKLNEAI-NKRKTITVLAVDNSSIGGLND-------RPVDEIKNILSVHVILDYYDMNKLKKLPKTSS 110 (280)
Q Consensus 39 p~fStF~~LL~~T~L~~~L-n~~~~iTVfAPtN~Af~aL~~-------l~~~~l~~lL~yHVl~~y~~~~~L~~l~~~~~ 110 (280)
|+||+|.++|+++|+.+.| +..+.+|||||+|+||+++.. .+.+.++++|+|||+.+.|...+|+.. ...
T Consensus 1 ~~~s~f~~~l~~~~l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~--~~~ 78 (128)
T PF02469_consen 1 PDLSTFSRLLEQAGLADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNG--KQT 78 (128)
T ss_dssp -TTHHHHHHHHHTTCHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCH--HEE
T ss_pred CCHHHHHHHHHHcCCHHHHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhccc--ccc
Confidence 6899999999999999999 677999999999999988721 167889999999999999999988753 011
Q ss_pred eeeecccCCCCCCCCceEEEEeC-CCCeEEEeCCCCCCCCceEEeeeeeecccceEEEEeCccccC
Q 042255 111 WTTMFQSTGNANDKQGYINCTRL-PGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVA 175 (280)
Q Consensus 111 ltTL~qatG~A~~~~G~vnvT~~-~G~~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qVd~vLlP 175 (280)
+.|+. .+..+.|+.. +++++.|.. .+++++.-. .--|..||-||+||+|
T Consensus 79 ~~t~~--------~g~~~~v~~~~~~~~~~v~~-------~a~i~~~~~-~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 79 LETLL--------NGQPLRVSSSPSNGTIYVNG-------KARIVKSDI-EASNGVIHIIDDVLIP 128 (128)
T ss_dssp EEBSS--------TTCEEEEEEEGGTTEEEECC-------EEEESEEEE-EESSEEEEEESS-TSS
T ss_pred ceecc--------CCCEEEEEEEecCCceEecC-------ceEEEeCCE-EeCCEEEEEECceECc
Confidence 55522 1235777764 455588754 467775432 3357888888999997
No 3
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.14 E-value=9.5e-11 Score=91.11 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=66.0
Q ss_pred EEEeeCCccccCCCC-----CCHH-HHHHHHhhcccccccChhhhccCCCCCceeeecccCCCCCCCCceEEEEeCCC-C
Q 042255 64 TVLAVDNSSIGGLND-----RPVD-EIKNILSVHVILDYYDMNKLKKLPKTSSWTTMFQSTGNANDKQGYINCTRLPG-E 136 (280)
Q Consensus 64 TVfAPtN~Af~aL~~-----l~~~-~l~~lL~yHVl~~y~~~~~L~~l~~~~~ltTL~qatG~A~~~~G~vnvT~~~G-~ 136 (280)
|||||+|+||+++.. +..+ .++++|+|||+++++...+|.. +..++||. +..+.++..++ +
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~---~~~~~Tl~---------g~~l~v~~~~~~~ 68 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN---GGTLPTLA---------GSKLRVTRSGDSG 68 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc---CCccccCC---------CCEEEEEEeCCCC
Confidence 899999999999743 2222 8999999999999999999864 22277763 23577777443 4
Q ss_pred eEEEeCCCCCCCCceEEeeeeeecccceEEEEeCccccCC
Q 042255 137 QFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAP 176 (280)
Q Consensus 137 ~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qVd~vLlP~ 176 (280)
.+.+.. +++++.-.. -.|+.|+-||+||+|+
T Consensus 69 ~i~in~--------~~v~~~di~-~~nGvih~Id~vL~P~ 99 (99)
T smart00554 69 TVTVNG--------ARIVEADIA-ATNGVVHVIDRVLLPP 99 (99)
T ss_pred eEEEcc--------eEEEECCEe-cCCeEEEEECceeCCC
Confidence 466642 456665333 3578888899999986
No 4
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.74 E-value=0.00019 Score=74.75 Aligned_cols=133 Identities=15% Similarity=0.120 Sum_probs=90.7
Q ss_pred cCHHHHHhcCCCcHHHHHHHHhcchHHHHhcCCCeEEEeeCCccccCCC-C----CCHHHHHHHHhhcccccccChhhhc
Q 042255 29 FDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLN-D----RPVDEIKNILSVHVILDYYDMNKLK 103 (280)
Q Consensus 29 ~NIt~iL~~~p~fStF~~LL~~T~L~~~Ln~~~~iTVfAPtN~Af~aL~-~----l~~~~l~~lL~yHVl~~y~~~~~L~ 103 (280)
..+-+.|.+-+.+|.|.++|+..++-++++..+.+|+|+|+|.++.+-. + .....+.++|.||++..-+-
T Consensus 508 ~~l~~~l~~d~r~s~~~~~le~~~l~e~l~~~~~~t~fvPt~ka~~~~~~~~~~~~~~~~l~~~l~yH~v~~~~~----- 582 (682)
T KOG1437|consen 508 VSLMEDLKTDGRISGTVQGLEGVLLPEELTPEGNYTLFVPTNKAWQKSTKDEKSLFHKKALQDFLKYHLVPGQSR----- 582 (682)
T ss_pred ccHHHHHhhccchhhhHHhhhhcCChhhhccCCceEEEeecccccccCCcchhhcchHHHHHHHHHhccccceee-----
Confidence 3567788888999999999999999999999899999999999999853 2 25689999999999987432
Q ss_pred cCCCCCceeeecccCCCCCCCCceEEEEeCCCCeEEEeCCCCCCCCceEEeeeeeecccceEEEEeCccccCCCCC
Q 042255 104 KLPKTSSWTTMFQSTGNANDKQGYINCTRLPGEQFVFGSSVKNSPPVAKFVKSVFSQPFNISVLQVSQPIVAPGLG 179 (280)
Q Consensus 104 ~l~~~~~ltTL~qatG~A~~~~G~vnvT~~~G~~V~~~S~~~gs~~~atvvksv~~~P~~lsV~qVd~vLlP~~lf 179 (280)
+..++...+. .+ +.++ ..|+.+.|..-.+-..++...+.-..-.-.|+.|++||.+|-|+.++
T Consensus 583 -ls~~~~~~v~----------~~-~k~s-~~~~~~~~~~~~~~~~vn~e~~~~~~i~~~n~~~h~i~~vl~p~~l~ 645 (682)
T KOG1437|consen 583 -LSLGSSPYVM----------IQ-VKLS-LRGDHLFFSLVNPRGDVNKERLVGIDIMGTNGVVHVIDLVLKPPDLP 645 (682)
T ss_pred -eeccccccee----------ee-eeEE-EecccEEeeeeccccceeeeeeeccceeeecceeEEEEEEcccCcch
Confidence 1111111111 11 2222 22332555443333334444443334455788999999999998665
No 5
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=96.69 E-value=0.0039 Score=65.15 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=65.0
Q ss_pred ccCHHHHHhcCCCcHHHHHHHHhcchHHHHhcCCCeEEEeeCCccccCCCC-CCHHHHHHHHhhcccccccChhhhccCC
Q 042255 28 GFDIIKILSNHPNLLAFSDLLSQTKLNEAINKRKTITVLAVDNSSIGGLND-RPVDEIKNILSVHVILDYYDMNKLKKLP 106 (280)
Q Consensus 28 a~NIt~iL~~~p~fStF~~LL~~T~L~~~Ln~~~~iTVfAPtN~Af~aL~~-l~~~~l~~lL~yHVl~~y~~~~~L~~l~ 106 (280)
..|+.++..+ .+.+++.+|+.+-++...|...+.+|+|+|.|.+|+.+.- ..+...++||.||++..|....++.+
T Consensus 373 ~~~l~~La~e-~~~st~~rlv~elgll~~L~~n~e~t~~lp~n~~fd~~~~~~~r~l~~qIL~~HII~~~~~~~~~y~-- 449 (682)
T KOG1437|consen 373 LKNLMSLARE-DEISTSMRLVAELGLLTALAPNDEATLLLPTNNLFDDLTPLESRRLAEQILYNHIIPEYLTSSSMYN-- 449 (682)
T ss_pred HHHHHHHHhc-ccccHHHHHHHhccceEEEcCCCceEEeeehhhhccCCChhhhHHHHHHHHHHhCcchhhhhhhhhc--
Confidence 4566776544 4789999999999999888877789999999999998643 33444799999999999999887643
Q ss_pred CCC-ceeee
Q 042255 107 KTS-SWTTM 114 (280)
Q Consensus 107 ~~~-~ltTL 114 (280)
+. .++|+
T Consensus 450 -~~~~v~t~ 457 (682)
T KOG1437|consen 450 -GQTTVRTL 457 (682)
T ss_pred -ccceeecc
Confidence 32 26665
No 6
>COG5373 Predicted membrane protein [Function unknown]
Probab=77.71 E-value=8.1 Score=41.88 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccc----hhhhhhh---hHhhhhhhhc
Q 042255 235 PEPVEAPAQSPPEPKDEAEAPAPSSAS----RLYLASG---VALAGFTAMA 278 (280)
Q Consensus 235 ~~p~~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~ 278 (280)
.++.+++++...+++.+++..|+-.+. +..|.+| ++=||..+|+
T Consensus 94 a~~psa~~~~~~~~apaep~~ps~aa~~f~~~~e~llGgrw~VwvGgl~La 144 (931)
T COG5373 94 AEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAIEWLLGGRWVVWVGGLALA 144 (931)
T ss_pred CCCCCCCCCCCCCCCCCCCcccccccCchhhHHHHHhcccchhhhHHHHHH
Confidence 444444444444444333433433333 4557777 6666666554
No 7
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=73.06 E-value=2.3 Score=34.19 Aligned_cols=28 Identities=39% Similarity=0.341 Sum_probs=16.5
Q ss_pred CCccchhHHHHHHHHHHHhccCCCCCCccCH
Q 042255 1 MELKASSSLVVLTALVLLFSSSSVSVNGFDI 31 (280)
Q Consensus 1 m~~~~~~~l~~la~~~l~~as~~~~a~a~NI 31 (280)
|..|..+.|.++.+++||++|. +++.++
T Consensus 1 MaSK~~llL~l~LA~lLlisSe---vaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE---VAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh---hhhHHh
Confidence 8888864333333366777777 554444
No 8
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=41.41 E-value=13 Score=30.25 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=23.6
Q ss_pred EEeeC-CccccCCCCCCHHHHHHHHhhcccccccC
Q 042255 65 VLAVD-NSSIGGLNDRPVDEIKNILSVHVILDYYD 98 (280)
Q Consensus 65 VfAPt-N~Af~aL~~l~~~~l~~lL~yHVl~~y~~ 98 (280)
|+-|+ +..|..+ .|.+..||-|||...|-.
T Consensus 12 ~~~PD~~tPF~s~----~DA~~RLLPYHv~~~~~~ 42 (109)
T PF15249_consen 12 VLNPDYKTPFRSL----EDAVERLLPYHVFQEPEE 42 (109)
T ss_pred HhCCCcCCCCCCH----HHHHHHhcchhhhcCCCC
Confidence 56666 5778764 689999999999988754
No 9
>PHA03269 envelope glycoprotein C; Provisional
Probab=33.07 E-value=93 Score=32.30 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=4.5
Q ss_pred cccceEEEEe
Q 042255 160 QPFNISVLQV 169 (280)
Q Consensus 160 ~P~~lsV~qV 169 (280)
.+-++.+.|+
T Consensus 22 ~~~~~~~~~l 31 (566)
T PHA03269 22 LNTNIPIPEL 31 (566)
T ss_pred cCCCccchhh
Confidence 3344454444
No 10
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=30.15 E-value=77 Score=31.24 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 042255 176 PGLGDVI 182 (280)
Q Consensus 176 ~~lf~~~ 182 (280)
+++.|..
T Consensus 100 ~g~LGQa 106 (407)
T PF04625_consen 100 PGFLGQA 106 (407)
T ss_pred ccccccC
Confidence 3444443
Done!