BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042256
         (196 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q39994|CALX_HELTU Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1
          Length = 540

 Score = 32.0 bits (71), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 2  RRKSCCRVCCCCFCFFIVLLIILIVIAGALFYLWFD 37
          RRK CC +  CCF      +  +   + A+FY  FD
Sbjct: 5  RRKMCCYIQFCCFVLIGCFISQICASSDAIFYESFD 40


>sp|O35664|INAR2_MOUSE Interferon alpha/beta receptor 2 OS=Mus musculus GN=Ifnar2 PE=1
           SV=2
          Length = 513

 Score = 30.8 bits (68), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 12/121 (9%)

Query: 15  CFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEA 74
           C  +++ +  IV+   + Y+     LP       +FRHF   +  + +   A  + R+E 
Sbjct: 250 CLVVMVFVSTIVMLKRIGYICLKDNLP----NVLNFRHFLTWIIPERSPSEA--IDRLEI 303

Query: 75  RNPNGKLRYY-YRHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETKTDELVEDG 133
              N K R + Y + D     G D + ++ T SV G+T      + L+  + T    ED 
Sbjct: 304 IPTNKKKRLWNYDYED-----GSDSDEEVPTASVTGYTMHGLTGKPLQQTSDTSASPEDP 358

Query: 134 M 134
           +
Sbjct: 359 L 359


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.140    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,283,754
Number of Sequences: 539616
Number of extensions: 2870062
Number of successful extensions: 9872
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9864
Number of HSP's gapped (non-prelim): 12
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)