Query 042256
Match_columns 196
No_of_seqs 114 out of 881
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:27:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.3E-37 2.8E-42 248.0 23.3 182 2-193 31-217 (219)
2 PF03168 LEA_2: Late embryogen 99.5 1.3E-13 2.8E-18 96.5 8.3 97 71-176 1-100 (101)
3 smart00769 WHy Water Stress an 98.6 8.2E-07 1.8E-11 62.4 9.3 83 62-153 11-96 (100)
4 PF12751 Vac7: Vacuolar segreg 98.1 1.9E-05 4.1E-10 67.1 9.0 83 2-95 294-376 (387)
5 PF07092 DUF1356: Protein of u 98.1 0.0011 2.4E-08 53.2 17.9 85 35-125 95-180 (238)
6 COG5608 LEA14-like dessication 97.6 0.0045 9.7E-08 46.3 13.1 108 39-164 31-141 (161)
7 PLN03160 uncharacterized prote 95.7 0.1 2.2E-06 41.7 9.1 23 1-23 33-55 (219)
8 TIGR02588 conserved hypothetic 91.1 0.64 1.4E-05 33.6 5.2 49 20-78 11-61 (122)
9 KOG3950 Gamma/delta sarcoglyca 85.8 2 4.4E-05 34.8 5.2 20 63-82 105-124 (292)
10 PF14155 DUF4307: Domain of un 84.2 13 0.00027 26.5 8.8 25 98-125 73-99 (112)
11 PF09624 DUF2393: Protein of u 74.3 32 0.0007 25.3 8.3 56 28-95 33-90 (149)
12 COG4698 Uncharacterized protei 70.5 4.3 9.2E-05 31.4 2.6 39 10-50 10-48 (197)
13 PRK10893 lipopolysaccharide ex 68.6 32 0.0007 26.9 7.3 20 37-56 37-56 (192)
14 PF05478 Prominin: Prominin; 67.9 2.8 6.1E-05 40.0 1.4 26 4-29 134-159 (806)
15 PF04790 Sarcoglycan_1: Sarcog 67.6 69 0.0015 26.4 10.4 19 63-81 83-101 (264)
16 PRK07021 fliL flagellar basal 67.2 14 0.00029 28.0 4.8 14 82-95 77-90 (162)
17 PF05478 Prominin: Prominin; 65.6 6.1 0.00013 37.7 3.2 19 14-32 141-159 (806)
18 PF14927 Neurensin: Neurensin 62.8 12 0.00027 27.8 3.7 32 7-38 39-70 (140)
19 PF12505 DUF3712: Protein of u 62.5 31 0.00067 24.7 5.8 42 47-91 83-124 (125)
20 PF10907 DUF2749: Protein of u 62.4 8.9 0.00019 24.5 2.5 16 24-39 13-28 (66)
21 PF09604 Potass_KdpF: F subuni 61.5 4.4 9.5E-05 20.9 0.8 21 20-40 4-24 (25)
22 PRK06531 yajC preprotein trans 60.0 5.7 0.00012 28.4 1.5 13 28-40 12-24 (113)
23 cd07912 Tweety_N N-terminal do 59.6 8.8 0.00019 33.8 2.9 14 11-24 79-92 (418)
24 PRK05529 cell division protein 59.4 22 0.00048 29.0 5.1 15 40-54 58-72 (255)
25 PRK12785 fliL flagellar basal 58.7 39 0.00083 25.7 6.0 13 83-95 86-98 (166)
26 KOG3927 Na+/K+ ATPase, beta su 58.7 10 0.00023 31.8 3.0 48 8-56 42-92 (300)
27 PTZ00116 signal peptidase; Pro 58.7 24 0.00051 27.5 4.8 46 38-83 36-84 (185)
28 PF09911 DUF2140: Uncharacteri 56.1 17 0.00036 28.4 3.6 23 19-41 9-31 (187)
29 PF04478 Mid2: Mid2 like cell 54.6 14 0.0003 27.9 2.8 21 23-43 62-82 (154)
30 COG2332 CcmE Cytochrome c-type 53.6 94 0.002 23.4 8.1 15 126-140 125-139 (153)
31 PF15012 DUF4519: Domain of un 53.0 16 0.00034 22.7 2.4 19 21-39 38-56 (56)
32 PRK13183 psbN photosystem II r 50.8 23 0.00049 21.0 2.7 24 15-38 9-32 (46)
33 TIGR02115 potass_kdpF K+-trans 50.6 4.4 9.5E-05 21.1 -0.3 20 21-40 4-23 (26)
34 PF09307 MHC2-interact: CLIP, 50.4 5.2 0.00011 28.6 0.0 34 4-38 25-58 (114)
35 TIGR02745 ccoG_rdxA_fixG cytoc 48.6 2E+02 0.0043 25.6 11.8 17 109-125 382-398 (434)
36 PF02468 PsbN: Photosystem II 48.5 19 0.00041 21.1 2.1 23 16-38 7-29 (43)
37 CHL00020 psbN photosystem II p 46.6 25 0.00053 20.6 2.4 24 15-38 6-29 (43)
38 PF05545 FixQ: Cbb3-type cytoc 46.4 9.8 0.00021 22.7 0.8 20 21-40 15-34 (49)
39 PRK07718 fliL flagellar basal 46.2 21 0.00046 26.4 2.7 12 84-95 63-74 (142)
40 PF04573 SPC22: Signal peptida 45.4 50 0.0011 25.5 4.7 11 36-46 32-42 (175)
41 PF08113 CoxIIa: Cytochrome c 45.2 14 0.00031 20.3 1.2 14 21-34 11-24 (34)
42 PF13396 PLDc_N: Phospholipase 45.1 37 0.0008 19.6 3.2 20 20-39 27-46 (46)
43 PRK14759 potassium-transportin 44.8 13 0.00027 19.9 0.9 20 21-40 9-28 (29)
44 PF14283 DUF4366: Domain of un 43.9 19 0.00042 28.8 2.3 9 35-43 182-190 (218)
45 PF11322 DUF3124: Protein of u 42.4 1.3E+02 0.0028 21.9 6.1 57 63-123 20-76 (125)
46 PRK13150 cytochrome c-type bio 41.7 1.6E+02 0.0034 22.5 7.8 15 126-140 131-145 (159)
47 PF12321 DUF3634: Protein of u 41.1 14 0.0003 26.3 0.9 18 28-45 9-28 (108)
48 PF11906 DUF3426: Protein of u 41.0 1.4E+02 0.003 21.7 8.4 59 43-107 48-106 (149)
49 PF06024 DUF912: Nucleopolyhed 40.8 47 0.001 23.0 3.7 17 20-36 70-86 (101)
50 cd01324 cbb3_Oxidase_CcoQ Cyto 40.6 20 0.00044 21.4 1.5 18 23-40 18-35 (48)
51 COG1580 FliL Flagellar basal b 40.5 1.1E+02 0.0024 23.2 5.9 17 20-36 26-42 (159)
52 PF11770 GAPT: GRB2-binding ad 40.4 35 0.00075 25.7 3.0 27 18-44 16-42 (158)
53 PF00927 Transglut_C: Transglu 40.0 63 0.0014 22.2 4.2 61 62-125 11-75 (107)
54 PF08770 SoxZ: Sulphur oxidati 38.9 77 0.0017 22.0 4.5 51 41-100 39-92 (100)
55 PF11797 DUF3324: Protein of u 38.4 1.6E+02 0.0034 21.6 9.0 92 39-158 26-119 (140)
56 PRK05696 fliL flagellar basal 37.4 44 0.00096 25.4 3.4 23 70-95 76-98 (170)
57 PRK08455 fliL flagellar basal 36.8 12 0.00026 29.0 0.1 12 84-95 103-114 (182)
58 PF12505 DUF3712: Protein of u 36.4 1.5E+02 0.0033 21.0 5.9 62 101-167 2-65 (125)
59 PF01102 Glycophorin_A: Glycop 36.1 17 0.00038 26.3 0.9 21 27-47 80-101 (122)
60 PF14654 Epiglycanin_C: Mucin, 35.3 57 0.0012 22.7 3.2 24 12-35 19-42 (106)
61 TIGR00996 Mtu_fam_mce virulenc 35.3 98 0.0021 25.3 5.4 13 91-106 50-62 (291)
62 PF06092 DUF943: Enterobacteri 34.8 28 0.0006 26.4 1.8 16 23-38 13-28 (157)
63 KOG4331 Polytopic membrane pro 34.7 31 0.00067 33.0 2.4 28 6-33 128-172 (865)
64 COG4736 CcoQ Cbb3-type cytochr 34.3 18 0.0004 22.8 0.6 17 24-40 18-34 (60)
65 COG1589 FtsQ Cell division sep 34.1 53 0.0012 26.9 3.5 35 20-54 37-71 (269)
66 COG1463 Ttg2C ABC-type transpo 33.7 1.6E+02 0.0035 25.2 6.6 57 91-151 58-114 (359)
67 PRK01844 hypothetical protein; 33.5 48 0.001 21.7 2.5 14 18-31 9-22 (72)
68 COG3763 Uncharacterized protei 30.5 66 0.0014 20.9 2.7 14 17-30 8-21 (71)
69 PRK00523 hypothetical protein; 30.4 65 0.0014 21.1 2.7 13 18-30 10-22 (72)
70 PF10969 DUF2771: Protein of u 28.5 65 0.0014 24.4 2.9 10 38-47 32-41 (161)
71 COG1862 YajC Preprotein transl 28.2 29 0.00064 24.1 0.9 15 26-40 16-31 (97)
72 PRK13254 cytochrome c-type bio 28.1 2.6E+02 0.0056 20.9 7.2 16 126-141 124-139 (148)
73 PHA02650 hypothetical protein; 27.8 30 0.00065 23.0 0.8 9 28-36 62-70 (81)
74 PRK05886 yajC preprotein trans 27.3 32 0.00069 24.5 1.0 12 29-40 15-26 (109)
75 PF15145 DUF4577: Domain of un 27.1 92 0.002 22.3 3.2 26 13-38 63-88 (128)
76 PLN03094 Substrate binding sub 27.1 3.1E+02 0.0067 23.9 7.1 41 91-138 135-177 (370)
77 PF06667 PspB: Phage shock pro 26.0 31 0.00067 22.8 0.6 17 21-37 9-25 (75)
78 PF11606 AlcCBM31: Family 31 c 25.9 1E+02 0.0022 20.9 3.0 38 75-113 4-44 (93)
79 TIGR01107 Na_K_ATPase_bet Sodi 25.8 44 0.00095 28.0 1.7 29 18-46 44-75 (289)
80 PF09788 Tmemb_55A: Transmembr 25.7 58 0.0013 26.7 2.3 22 9-30 197-218 (256)
81 PF06692 MNSV_P7B: Melon necro 25.5 74 0.0016 19.7 2.2 9 35-43 31-39 (61)
82 PRK14758 hypothetical protein; 25.0 94 0.002 16.1 2.2 15 20-34 12-26 (27)
83 PF06919 Phage_T4_Gp30_7: Phag 24.8 1.5E+02 0.0032 21.0 3.8 33 76-112 40-73 (121)
84 KOG2927 Membrane component of 24.5 51 0.0011 28.4 1.8 23 15-37 229-251 (372)
85 COG5353 Uncharacterized protei 24.1 50 0.0011 24.9 1.5 21 19-39 14-34 (161)
86 PF05781 MRVI1: MRVI1 protein; 24.0 64 0.0014 29.4 2.4 30 9-38 475-504 (538)
87 PF14283 DUF4366: Domain of un 23.9 87 0.0019 25.1 3.0 19 28-46 172-190 (218)
88 COG3121 FimC P pilus assembly 23.7 1.7E+02 0.0037 23.5 4.7 21 71-92 166-186 (235)
89 PF09677 TrbI_Ftype: Type-F co 23.6 78 0.0017 22.5 2.4 15 28-42 18-32 (111)
90 PF11395 DUF2873: Protein of u 23.3 1.4E+02 0.0031 16.9 2.9 8 29-36 25-32 (43)
91 PTZ00382 Variant-specific surf 23.1 70 0.0015 22.0 2.0 11 26-36 81-91 (96)
92 KOG4101 Cysteine-rich hydropho 22.8 24 0.00053 26.3 -0.3 10 6-15 98-107 (175)
93 PRK11875 psbT photosystem II r 22.8 66 0.0014 17.4 1.4 11 26-36 12-22 (31)
94 PF10694 DUF2500: Protein of u 22.7 2.6E+02 0.0056 19.5 5.0 14 39-52 31-44 (110)
95 PF09865 DUF2092: Predicted pe 22.5 3.7E+02 0.008 21.4 6.3 38 61-102 34-73 (214)
96 PF06837 Fijivirus_P9-2: Fijiv 22.5 55 0.0012 25.6 1.5 17 6-22 108-124 (214)
97 PF08693 SKG6: Transmembrane a 22.0 1E+02 0.0022 17.7 2.2 9 30-38 30-38 (40)
98 CHL00031 psbT photosystem II p 21.8 83 0.0018 17.2 1.7 8 29-36 15-22 (33)
99 PF15099 PIRT: Phosphoinositid 21.7 23 0.00049 25.8 -0.7 26 20-45 57-82 (129)
100 PRK13031 preprotein translocas 21.4 3.6E+02 0.0078 20.3 7.2 20 40-59 6-25 (149)
101 KOG1210 Predicted 3-ketosphing 21.2 1.1E+02 0.0023 26.2 3.0 60 87-153 207-268 (331)
102 PF11337 DUF3139: Protein of u 20.8 92 0.002 20.7 2.2 10 29-38 21-30 (85)
103 PF14828 Amnionless: Amnionles 20.7 59 0.0013 28.9 1.6 20 24-43 350-369 (437)
104 COG5294 Uncharacterized protei 20.7 1E+02 0.0022 22.0 2.4 14 67-80 53-66 (113)
105 COG2268 Uncharacterized protei 20.4 1.2E+02 0.0025 27.9 3.3 22 20-41 17-40 (548)
106 PF10830 DUF2553: Protein of u 20.4 2.7E+02 0.0058 18.4 4.2 26 80-108 9-34 (76)
107 PF01589 Alpha_E1_glycop: Alph 20.1 1.3E+02 0.0028 26.9 3.4 11 34-44 68-78 (502)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=247.98 Aligned_cols=182 Identities=18% Similarity=0.307 Sum_probs=153.4
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHhheeeEeecCCcEEEeeeeEEeeEEeecCC-CCceeeEEEEEEEEEeCCCCe
Q 042256 2 RRKSCCRVCCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKS-DGTYLHAATLTRVEARNPNGK 80 (196)
Q Consensus 2 ~~~~~~~~~c~c~~~~~~~li~l~~~~~~i~~lv~rP~~P~f~v~~~~v~~f~~~~~~-~~~~l~~~~~~~l~v~NPN~~ 80 (196)
+||++|++||+|++.++++ +++++++++|++||||+|+|+|+++++++|++++.+ .+..+|++++++++++|||.
T Consensus 31 ~~r~~~~~c~~~~~a~~l~---l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~- 106 (219)
T PLN03160 31 TRRRNCIKCCGCITATLLI---LATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV- 106 (219)
T ss_pred cccccceEEHHHHHHHHHH---HHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-
Confidence 3455566676666666443 356677889999999999999999999999997532 24678888999999999996
Q ss_pred eEEEEeCcEEEEEEecCCCeeeecccCCCeeecCCCceEEEEEEe-eccccCCcchhHhhccccCCcEEEEEEEEEEEEE
Q 042256 81 LRYYYRHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETK-TDELVEDGMGPRLMSHHKSKDLVVNVVVKTTVAV 159 (196)
Q Consensus 81 ~~i~Y~~~~~~v~y~~~~~~~lg~~~~p~f~q~~~~~~~v~~~~~-~~~~l~~~~~~~l~~d~~~g~v~l~v~v~~~~r~ 159 (196)
++|+|++++++++|+ |+.+|++.+|+|+|++++++.+.+++. .+..+.. ..+|.+|..+|.++|++++++++++
T Consensus 107 ~~~~Y~~~~~~v~Y~---g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~~G~v~l~~~~~v~gkV 181 (219)
T PLN03160 107 ASFKYSNTTTTIYYG---GTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDISSGLLNMNSYTRIGGKV 181 (219)
T ss_pred eeEEEcCeEEEEEEC---CEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhhCCeEEEEEEEEEEEEE
Confidence 899999999999999 999999999999999999999999887 4443332 3578999999999999999999999
Q ss_pred EEeEEEecCeEEEEEeCceeecccCC---CCCceeeE
Q 042256 160 IVQGRKTRPLAVKVTCGGQSLKALDK---MPKCTIHF 193 (196)
Q Consensus 160 kvg~~~s~~~~~~v~C~~v~v~~~~~---~~~C~~~~ 193 (196)
++|++.++++.++++|+ +.++..+. +++|..++
T Consensus 182 kv~~i~k~~v~~~v~C~-v~V~~~~~~i~~~~C~~~~ 217 (219)
T PLN03160 182 KILKIIKKHVVVKMNCT-MTVNITSQAIQGQKCKRHV 217 (219)
T ss_pred EEEEEEEEEEEEEEEeE-EEEECCCCEEeccEecccc
Confidence 99999999999999997 88887654 78998874
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.49 E-value=1.3e-13 Score=96.53 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=75.0
Q ss_pred EEEEeCCCCeeEEEEeCcEEEEEEecCCCeeee-cccCCCeeecCCCceEEEEEEe-eccccCCcchhHhhccccCCcEE
Q 042256 71 RVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLG-TGSVPGFTQGTKNARSLKIETK-TDELVEDGMGPRLMSHHKSKDLV 148 (196)
Q Consensus 71 ~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg-~~~~p~f~q~~~~~~~v~~~~~-~~~~l~~~~~~~l~~d~~~g~v~ 148 (196)
+++++|||. ++++|++++++++|. |..+| ....|+|.|++++++.+.+.+. +...+ .+.+.++. +|..+
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~---g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~ 71 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYN---GQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVP 71 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEES---SSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSC
T ss_pred CEEEECCCc-eeEEEeCEEEEEEEC---CEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccc
Confidence 589999997 999999999999999 99999 6679999999999999999887 54443 45666666 67788
Q ss_pred EEEEEEEEEEEEE-eEEEecCeEEEEEeC
Q 042256 149 VNVVVKTTVAVIV-QGRKTRPLAVKVTCG 176 (196)
Q Consensus 149 l~v~v~~~~r~kv-g~~~s~~~~~~v~C~ 176 (196)
+++.+++++++++ +.....++.+.++|+
T Consensus 72 ~~v~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 72 FDVTYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred eEEEEEEEEEEEEcccceeeeEEEeEEeE
Confidence 8888889999995 443334566666664
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.56 E-value=8.2e-07 Score=62.36 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=64.1
Q ss_pred ceeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeecccCC-CeeecCCCceEEEEEEe-eccccCCcchhHhh
Q 042256 62 TYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVP-GFTQGTKNARSLKIETK-TDELVEDGMGPRLM 139 (196)
Q Consensus 62 ~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~~p-~f~q~~~~~~~v~~~~~-~~~~l~~~~~~~l~ 139 (196)
..++.++.+++.++||| .+++.|+..+.+++|+ |..+|++..+ +...++++++.+.+++. .. .....+.
T Consensus 11 ~~~~~~~~l~l~v~NPN-~~~l~~~~~~y~l~~~---g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~-----~~~~~~~ 81 (100)
T smart00769 11 SGLEIEIVLKVKVQNPN-PFPIPVNGLSYDLYLN---GVELGSGEIPDSGTLPGNGRTVLDVPVTVNL-----FLAEALI 81 (100)
T ss_pred cceEEEEEEEEEEECCC-CCccccccEEEEEEEC---CEEEEEEEcCCCcEECCCCcEEEEEEEEeeh-----hHhHHHH
Confidence 35678899999999999 7899999999999999 9999999985 79999999999888876 31 1223444
Q ss_pred ccccCC-cEEEEEEE
Q 042256 140 SHHKSK-DLVVNVVV 153 (196)
Q Consensus 140 ~d~~~g-~v~l~v~v 153 (196)
.++.+| .++++++.
T Consensus 82 ~~l~~~~~~~y~l~g 96 (100)
T smart00769 82 WHIANGEEIPYRLDG 96 (100)
T ss_pred HhhccCCCccEEEEE
Confidence 555555 34444443
No 4
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=98.11 E-value=1.9e-05 Score=67.11 Aligned_cols=83 Identities=24% Similarity=0.287 Sum_probs=54.1
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHhheeeEeecCCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCee
Q 042256 2 RRKSCCRVCCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKL 81 (196)
Q Consensus 2 ~~~~~~~~~c~c~~~~~~~li~l~~~~~~i~~lv~rP~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~ 81 (196)
++|++|.|+++|+++.|++|+++.+++++ +|--.+|--.|+-..+++.-.+ .-..-|++++.+.||| -+
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~ig~~~gF----v~AttKpL~~v~v~~I~NVlaS------~qELmfdl~V~A~NPn-~~ 362 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVIGFAIGF----VFATTKPLTDVQVVSIQNVLAS------EQELMFDLTVEAFNPN-WF 362 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHHHHHHHh----hhhcCcccccceEEEeeeeeec------cceEEEeeEEEEECCC-eE
Confidence 56777888888887776554433333332 3333444333444444443332 2356789999999999 78
Q ss_pred EEEEeCcEEEEEEe
Q 042256 82 RYYYRHTDVEVTAG 95 (196)
Q Consensus 82 ~i~Y~~~~~~v~y~ 95 (196)
.|..++.+++|+.+
T Consensus 363 ~V~I~d~dldIFAK 376 (387)
T PF12751_consen 363 TVTIDDMDLDIFAK 376 (387)
T ss_pred EEEeccceeeeEec
Confidence 99999999999987
No 5
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.07 E-value=0.0011 Score=53.23 Aligned_cols=85 Identities=14% Similarity=0.249 Sum_probs=62.8
Q ss_pred EeecCCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeecccCCCe-eec
Q 042256 35 WFDPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVPGF-TQG 113 (196)
Q Consensus 35 v~rP~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~~p~f-~q~ 113 (196)
.+=|+.- .|.++++....+.-+.+..++..++.-.+.++||| .+.+.-.+.++++.|. ...+|.+..... ..+
T Consensus 95 FLfPRsV--~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~N-Fy~V~Vt~~s~qv~~~---~~VVG~~~~~~~~~I~ 168 (238)
T PF07092_consen 95 FLFPRSV--TVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPN-FYPVTVTNLSIQVLYM---KTVVGKGKNSNITVIG 168 (238)
T ss_pred EEeCcEE--EEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCC-EEEEEEEeEEEEEEEE---EeEEeeeEecceEEec
Confidence 4446655 44555555555544333457888899999999999 8899999999999999 889999876644 567
Q ss_pred CCCceEEEEEEe
Q 042256 114 TKNARSLKIETK 125 (196)
Q Consensus 114 ~~~~~~v~~~~~ 125 (196)
|++.+.+..++.
T Consensus 169 Prs~~q~~~tV~ 180 (238)
T PF07092_consen 169 PRSSKQVNYTVK 180 (238)
T ss_pred ccCCceEEEEee
Confidence 787777766655
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.59 E-value=0.0045 Score=46.27 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=74.8
Q ss_pred CCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeeccc-CCCeeecCCCc
Q 042256 39 KLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGS-VPGFTQGTKNA 117 (196)
Q Consensus 39 ~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~-~p~f~q~~~~~ 117 (196)
++|...--.+..-... .....+-.++.++||| -+++-....+.+++-. |.++|.+. ..++..+|++.
T Consensus 31 ~~p~ve~~ka~wGkvt--------~s~~EiV~t~KiyNPN-~fPipVtgl~y~vymN---~Iki~eG~~~k~~~v~p~S~ 98 (161)
T COG5608 31 KKPGVESMKAKWGKVT--------NSETEIVGTLKIYNPN-PFPIPVTGLQYAVYMN---DIKIGEGEILKGTTVPPNSR 98 (161)
T ss_pred CCCCceEEEEEEEEEe--------ccceEEEEEEEecCCC-CcceeeeceEEEEEEc---ceEeeccccccceEECCCCe
Confidence 6776555555554443 2345688999999999 6899999999999998 99999997 67799999999
Q ss_pred eEEEEEEe-eccccCCcchhHhhccccCCc-EEEEEEEEEEEEEEEeEE
Q 042256 118 RSLKIETK-TDELVEDGMGPRLMSHHKSKD-LVVNVVVKTTVAVIVQGR 164 (196)
Q Consensus 118 ~~v~~~~~-~~~~l~~~~~~~l~~d~~~g~-v~l~v~v~~~~r~kvg~~ 164 (196)
..+.+.+. +.-.+. +.+...+.+|. -++++++ +..+++|..
T Consensus 99 ~tvdv~l~~d~~~~k----e~w~~hi~ngErs~Ir~~i--~~~v~vg~~ 141 (161)
T COG5608 99 ETVDVPLRLDNSKIK----EWWVTHIENGERSTIRVRI--KGVVKVGGM 141 (161)
T ss_pred EEEEEEEEEehHHHH----HHHHHHhhccCcccEEEEE--EEEEEEccE
Confidence 99988877 433332 34555666674 2333333 333445443
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=95.72 E-value=0.1 Score=41.75 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=12.5
Q ss_pred CCCCCccccchhHHHHHHHHHHH
Q 042256 1 RRRKSCCRVCCCCFCFFIVLLII 23 (196)
Q Consensus 1 ~~~~~~~~~~c~c~~~~~~~li~ 23 (196)
||++.+||.|+|.++.++.++++
T Consensus 33 r~~~~~c~~~~~a~~l~l~~v~~ 55 (219)
T PLN03160 33 RRNCIKCCGCITATLLILATTIL 55 (219)
T ss_pred cccceEEHHHHHHHHHHHHHHHH
Confidence 45555566666665555544443
No 8
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=91.13 E-value=0.64 Score=33.63 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhheeeEe--ecCCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCC
Q 042256 20 LLIILIVIAGALFYLWF--DPKLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPN 78 (196)
Q Consensus 20 ~li~l~~~~~~i~~lv~--rP~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN 78 (196)
.++++++++++++|.++ +++.|.+++......+- ....+-+-++++|--
T Consensus 11 s~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~----------~~gqyyVpF~V~N~g 61 (122)
T TIGR02588 11 STLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM----------QTGQYYVPFAIHNLG 61 (122)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE----------eCCEEEEEEEEEeCC
Confidence 34455666778887776 46789998887776542 233456677888855
No 9
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=85.77 E-value=2 Score=34.78 Aligned_cols=20 Identities=55% Similarity=0.851 Sum_probs=15.3
Q ss_pred eeeEEEEEEEEEeCCCCeeE
Q 042256 63 YLHAATLTRVEARNPNGKLR 82 (196)
Q Consensus 63 ~l~~~~~~~l~v~NPN~~~~ 82 (196)
.+...=++++.++|||..+.
T Consensus 105 ~~~S~rnvtvnarn~~g~v~ 124 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVT 124 (292)
T ss_pred EEEeccCeeEEccCCCCcee
Confidence 44455589999999998774
No 10
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=84.20 E-value=13 Score=26.49 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=12.9
Q ss_pred CCeeeeccc--CCCeeecCCCceEEEEEEe
Q 042256 98 KEIDLGTGS--VPGFTQGTKNARSLKIETK 125 (196)
Q Consensus 98 ~~~~lg~~~--~p~f~q~~~~~~~v~~~~~ 125 (196)
++..+|.-. +|+ +..++..+..++.
T Consensus 73 d~aeVGrreV~vp~---~~~~~~~~~v~v~ 99 (112)
T PF14155_consen 73 DGAEVGRREVLVPP---SGERTVRVTVTVR 99 (112)
T ss_pred CCCEEEEEEEEECC---CCCcEEEEEEEEE
Confidence 367777654 565 3333444445544
No 11
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=74.26 E-value=32 Score=25.34 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=34.1
Q ss_pred HHhheeeEeec--CCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEe
Q 042256 28 AGALFYLWFDP--KLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAG 95 (196)
Q Consensus 28 ~~~i~~lv~rP--~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~ 95 (196)
+..+.|.++.. ++|+.++.+.+- ++.+ -.+.+..+++|-. +..+..=.+++++...
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~--l~~~---------~~~~v~g~V~N~g-~~~i~~c~i~~~l~~~ 90 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR--LQYS---------ESFYVDGTVTNTG-KFTIKKCKITVKLYND 90 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee--eeec---------cEEEEEEEEEECC-CCEeeEEEEEEEEEeC
Confidence 44555555554 566666655543 3322 2466778999977 4566666677777764
No 12
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.50 E-value=4.3 Score=31.42 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhheeeEeecCCcEEEeeeeEE
Q 042256 10 CCCCFCFFIVLLIILIVIAGALFYLWFDPKLPVFHLQSFSF 50 (196)
Q Consensus 10 ~c~c~~~~~~~li~l~~~~~~i~~lv~rP~~P~f~v~~~~v 50 (196)
.+-++|++++.+ ...++++++.+++.|+.|..++.+++=
T Consensus 10 ~WKw~f~iLLAl--n~l~~~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 10 YWKWLFFILLAL--NTLLAVLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHH--HHHHHHHhheeeccCCCCCchhhccCc
Confidence 344445443333 333347788889999998777777764
No 13
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=68.59 E-value=32 Score=26.86 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=16.2
Q ss_pred ecCCcEEEeeeeEEeeEEee
Q 042256 37 DPKLPVFHLQSFSFRHFNVS 56 (196)
Q Consensus 37 rP~~P~f~v~~~~v~~f~~~ 56 (196)
.++.|.|..++++...|+..
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCEEEeccEEEEECCC
Confidence 36779999999998888754
No 14
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=67.91 E-value=2.8 Score=39.99 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=16.0
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHH
Q 042256 4 KSCCRVCCCCFCFFIVLLIILIVIAG 29 (196)
Q Consensus 4 ~~~~~~~c~c~~~~~~~li~l~~~~~ 29 (196)
+..|+|.|+-++.+++.+++++|++.
T Consensus 134 ~~~c~R~~l~~~L~~~~~~il~g~i~ 159 (806)
T PF05478_consen 134 NDACRRGCLGILLLLLTLIILFGVIC 159 (806)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHH
Confidence 33566767666666666666666543
No 15
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=67.57 E-value=69 Score=26.41 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=12.2
Q ss_pred eeeEEEEEEEEEeCCCCee
Q 042256 63 YLHAATLTRVEARNPNGKL 81 (196)
Q Consensus 63 ~l~~~~~~~l~v~NPN~~~ 81 (196)
.+..+=+++++++|+|...
T Consensus 83 ~i~s~~~v~~~~r~~~g~~ 101 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGSV 101 (264)
T ss_pred EEEecCceEEEEecCCCcc
Confidence 3444446778888888653
No 16
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=67.21 E-value=14 Score=28.04 Aligned_cols=14 Identities=0% Similarity=-0.237 Sum_probs=9.5
Q ss_pred EEEEeCcEEEEEEe
Q 042256 82 RYYYRHTDVEVTAG 95 (196)
Q Consensus 82 ~i~Y~~~~~~v~y~ 95 (196)
+.+|=...+++.+.
T Consensus 77 ~~rylkv~i~L~~~ 90 (162)
T PRK07021 77 ADRVLYVGLTLRLP 90 (162)
T ss_pred CceEEEEEEEEEEC
Confidence 35777777777666
No 17
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=65.64 E-value=6.1 Score=37.74 Aligned_cols=19 Identities=26% Similarity=0.502 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhe
Q 042256 14 FCFFIVLLIILIVIAGALF 32 (196)
Q Consensus 14 ~~~~~~~li~l~~~~~~i~ 32 (196)
.+.++++++.++.+++++.
T Consensus 141 ~l~~~L~~~~~~il~g~i~ 159 (806)
T PF05478_consen 141 CLGILLLLLTLIILFGVIC 159 (806)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555554444444444444
No 18
>PF14927 Neurensin: Neurensin
Probab=62.80 E-value=12 Score=27.78 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=17.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhheeeEeec
Q 042256 7 CRVCCCCFCFFIVLLIILIVIAGALFYLWFDP 38 (196)
Q Consensus 7 ~~~~c~c~~~~~~~li~l~~~~~~i~~lv~rP 38 (196)
+...||=.++++-++++++|++++++-..+-|
T Consensus 39 w~s~~wkV~~i~g~l~Ll~Gi~~l~vgY~vP~ 70 (140)
T PF14927_consen 39 WSSVCWKVGFISGLLLLLLGIVALTVGYLVPP 70 (140)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 33456544444445566677776665555433
No 19
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=62.51 E-value=31 Score=24.72 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=25.3
Q ss_pred eeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEeCcEEE
Q 042256 47 SFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVE 91 (196)
Q Consensus 47 ~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~ 91 (196)
++.+.++++..+.+ .=..++..++.+.||. .+.+..+...+.
T Consensus 83 g~~I~~~~v~~~~~--~~g~~~~~~~~l~NPS-~~ti~lG~v~~~ 124 (125)
T PF12505_consen 83 GFTISDFDVTGGTP--ADGINLNATVTLPNPS-PLTIDLGNVTLN 124 (125)
T ss_pred CceEeeEEeecCCC--CCcEEEEEEEEEcCCC-eEEEEeccEEEe
Confidence 33455555543321 1255678889999999 577766665443
No 20
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=62.44 E-value=8.9 Score=24.49 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=12.5
Q ss_pred HHHHHHhheeeEeecC
Q 042256 24 LIVIAGALFYLWFDPK 39 (196)
Q Consensus 24 l~~~~~~i~~lv~rP~ 39 (196)
+++.++.+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 4455678889999998
No 21
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=61.48 E-value=4.4 Score=20.89 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhheeeEeecCC
Q 042256 20 LLIILIVIAGALFYLWFDPKL 40 (196)
Q Consensus 20 ~li~l~~~~~~i~~lv~rP~~ 40 (196)
.+++.+++.+-++|..++|.+
T Consensus 4 ~~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 4 GGIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHHhCccc
Confidence 344455556666666778854
No 22
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=59.97 E-value=5.7 Score=28.43 Aligned_cols=13 Identities=8% Similarity=0.074 Sum_probs=8.4
Q ss_pred HHhheeeEeecCC
Q 042256 28 AGALFYLWFDPKL 40 (196)
Q Consensus 28 ~~~i~~lv~rP~~ 40 (196)
.++++|+++||..
T Consensus 12 ~~~i~yf~iRPQk 24 (113)
T PRK06531 12 MLGLIFFMQRQQK 24 (113)
T ss_pred HHHHHHheechHH
Confidence 3445677899954
No 23
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=59.62 E-value=8.8 Score=33.82 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHH
Q 042256 11 CCCFCFFIVLLIIL 24 (196)
Q Consensus 11 c~c~~~~~~~li~l 24 (196)
|+|+.+.++++.++
T Consensus 79 ~~c~~~sLiiltL~ 92 (418)
T cd07912 79 ICCLKWSLVIATLL 92 (418)
T ss_pred ccHHHHHHHHHHHH
Confidence 56666665444443
No 24
>PRK05529 cell division protein FtsQ; Provisional
Probab=59.41 E-value=22 Score=29.01 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=12.3
Q ss_pred CcEEEeeeeEEeeEE
Q 042256 40 LPVFHLQSFSFRHFN 54 (196)
Q Consensus 40 ~P~f~v~~~~v~~f~ 54 (196)
.|.|.|..+.+++-.
T Consensus 58 Sp~~~v~~I~V~Gn~ 72 (255)
T PRK05529 58 SPLLALRSIEVAGNM 72 (255)
T ss_pred CCceEEEEEEEECCc
Confidence 579999999998655
No 25
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=58.69 E-value=39 Score=25.73 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=9.0
Q ss_pred EEEeCcEEEEEEe
Q 042256 83 YYYRHTDVEVTAG 95 (196)
Q Consensus 83 i~Y~~~~~~v~y~ 95 (196)
.+|=...+++.+.
T Consensus 86 ~ryLkv~i~L~~~ 98 (166)
T PRK12785 86 VQYLKLKVVLEVK 98 (166)
T ss_pred ceEEEEEEEEEEC
Confidence 4777777777766
No 26
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=58.69 E-value=10 Score=31.81 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=28.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhheeeEe---ecCCcEEEeeeeEEeeEEee
Q 042256 8 RVCCCCFCFFIVLLIILIVIAGALFYLWF---DPKLPVFHLQSFSFRHFNVS 56 (196)
Q Consensus 8 ~~~c~c~~~~~~~li~l~~~~~~i~~lv~---rP~~P~f~v~~~~v~~f~~~ 56 (196)
++|+-.+++.+++-+++++++++.+|+++ .|+.|++. ++..=.++...
T Consensus 42 ~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~~~~PGl~~~ 92 (300)
T KOG3927|consen 42 SSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DSGANPGLSFR 92 (300)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccCCCCceeec
Confidence 45565555555555566666666666654 69999999 44222344443
No 27
>PTZ00116 signal peptidase; Provisional
Probab=58.67 E-value=24 Score=27.54 Aligned_cols=46 Identities=17% Similarity=0.028 Sum_probs=22.9
Q ss_pred cCCcEEEeeeeEEeeEEeecC--CCCceeeEEEEEEEE-EeCCCCeeEE
Q 042256 38 PKLPVFHLQSFSFRHFNVSVK--SDGTYLHAATLTRVE-ARNPNGKLRY 83 (196)
Q Consensus 38 P~~P~f~v~~~~v~~f~~~~~--~~~~~l~~~~~~~l~-v~NPN~~~~i 83 (196)
++.|..+++-.++.+|...+. .+...+..+++..++ .-|=|.|--+
T Consensus 36 ~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNtKqlF 84 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLF 84 (185)
T ss_pred CCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccccEEE
Confidence 456656666666677764432 233344444444433 3355554333
No 28
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=56.07 E-value=17 Score=28.37 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhheeeEeecCCc
Q 042256 19 VLLIILIVIAGALFYLWFDPKLP 41 (196)
Q Consensus 19 ~~li~l~~~~~~i~~lv~rP~~P 41 (196)
+++.+++++++.++..+++|..|
T Consensus 9 ~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 9 ILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHhheeeEEEccCCC
Confidence 34555566667788888899865
No 29
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=54.58 E-value=14 Score=27.91 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=14.9
Q ss_pred HHHHHHHhheeeEeecCCcEE
Q 042256 23 ILIVIAGALFYLWFDPKLPVF 43 (196)
Q Consensus 23 ~l~~~~~~i~~lv~rP~~P~f 43 (196)
++|++++++||+..|+++-.|
T Consensus 62 ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 62 ILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHhheeEEEecccCcc
Confidence 334567788889999987543
No 30
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=53.64 E-value=94 Score=23.40 Aligned_cols=15 Identities=0% Similarity=0.091 Sum_probs=9.2
Q ss_pred eccccCCcchhHhhc
Q 042256 126 TDELVEDGMGPRLMS 140 (196)
Q Consensus 126 ~~~~l~~~~~~~l~~ 140 (196)
+..-.++++.++|+.
T Consensus 125 dEnY~P~ev~~~mk~ 139 (153)
T COG2332 125 DENYTPPEVAKAMKK 139 (153)
T ss_pred CcccCCHHHHHHhhh
Confidence 555566666666654
No 31
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=52.96 E-value=16 Score=22.70 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=12.0
Q ss_pred HHHHHHHHHhheeeEeecC
Q 042256 21 LIILIVIAGALFYLWFDPK 39 (196)
Q Consensus 21 li~l~~~~~~i~~lv~rP~ 39 (196)
+++++..+++++|+.-||+
T Consensus 38 l~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 38 LAAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHHhheeEEeccCC
Confidence 3344445567778887884
No 32
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=50.78 E-value=23 Score=21.04 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhheeeEeec
Q 042256 15 CFFIVLLIILIVIAGALFYLWFDP 38 (196)
Q Consensus 15 ~~~~~~li~l~~~~~~i~~lv~rP 38 (196)
..++++..+++++.+..+|..|-|
T Consensus 9 ~~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHHhhheeeeccCC
Confidence 344566777888888999999876
No 33
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=50.64 E-value=4.4 Score=21.09 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=12.1
Q ss_pred HHHHHHHHHhheeeEeecCC
Q 042256 21 LIILIVIAGALFYLWFDPKL 40 (196)
Q Consensus 21 li~l~~~~~~i~~lv~rP~~ 40 (196)
+++.+++.+.++|..++|.+
T Consensus 4 ~~l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 4 LVLAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHHHhCHHh
Confidence 34444555666666778854
No 34
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=50.40 E-value=5.2 Score=28.63 Aligned_cols=34 Identities=9% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHhheeeEeec
Q 042256 4 KSCCRVCCCCFCFFIVLLIILIVIAGALFYLWFDP 38 (196)
Q Consensus 4 ~~~~~~~c~c~~~~~~~li~l~~~~~~i~~lv~rP 38 (196)
++.|.|.+-...+.+++.++++| -++..|++|.=
T Consensus 25 ~~s~sra~~vagltvLa~LLiAG-Qa~TaYfv~~Q 58 (114)
T PF09307_consen 25 RGSCSRALKVAGLTVLACLLIAG-QAVTAYFVFQQ 58 (114)
T ss_dssp -----------------------------------
T ss_pred CCCccchhHHHHHHHHHHHHHHh-HHHHHHHHHHh
Confidence 34466644444444444444444 45677777754
No 35
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=48.62 E-value=2e+02 Score=25.61 Aligned_cols=17 Identities=6% Similarity=-0.025 Sum_probs=12.4
Q ss_pred CeeecCCCceEEEEEEe
Q 042256 109 GFTQGTKNARSLKIETK 125 (196)
Q Consensus 109 ~f~q~~~~~~~v~~~~~ 125 (196)
++..++.+...+.+.+.
T Consensus 382 ~i~v~~g~~~~~~v~v~ 398 (434)
T TIGR02745 382 PIHVKAGEKVKLPVFLR 398 (434)
T ss_pred eEEECCCCEEEEEEEEE
Confidence 67888887777766654
No 36
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=48.49 E-value=19 Score=21.08 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhheeeEeec
Q 042256 16 FFIVLLIILIVIAGALFYLWFDP 38 (196)
Q Consensus 16 ~~~~~li~l~~~~~~i~~lv~rP 38 (196)
..+++..+++++.+..+|..|-|
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCC
Confidence 44556677788888999999976
No 37
>CHL00020 psbN photosystem II protein N
Probab=46.64 E-value=25 Score=20.60 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhheeeEeec
Q 042256 15 CFFIVLLIILIVIAGALFYLWFDP 38 (196)
Q Consensus 15 ~~~~~~li~l~~~~~~i~~lv~rP 38 (196)
..++++..+++++.+..+|..|-|
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred hHHHHHHHHHHHhhheeeeeccCC
Confidence 344556677788888888988876
No 38
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=46.39 E-value=9.8 Score=22.65 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=11.1
Q ss_pred HHHHHHHHHhheeeEeecCC
Q 042256 21 LIILIVIAGALFYLWFDPKL 40 (196)
Q Consensus 21 li~l~~~~~~i~~lv~rP~~ 40 (196)
++++.++.+++++.+++|++
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHcccc
Confidence 33344444555666778863
No 39
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=46.21 E-value=21 Score=26.38 Aligned_cols=12 Identities=0% Similarity=0.202 Sum_probs=6.9
Q ss_pred EEeCcEEEEEEe
Q 042256 84 YYRHTDVEVTAG 95 (196)
Q Consensus 84 ~Y~~~~~~v~y~ 95 (196)
+|=..++++.+.
T Consensus 63 ~ylk~~i~l~~~ 74 (142)
T PRK07718 63 NFIRIQFKIETD 74 (142)
T ss_pred CEEEEEEEEEEC
Confidence 455555666665
No 40
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=45.38 E-value=50 Score=25.49 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=6.0
Q ss_pred eecCCcEEEee
Q 042256 36 FDPKLPVFHLQ 46 (196)
Q Consensus 36 ~rP~~P~f~v~ 46 (196)
+.|..|..++.
T Consensus 32 ~~~~~~~~~i~ 42 (175)
T PF04573_consen 32 FHPPSPSVSIS 42 (175)
T ss_pred ccCCCCceEEE
Confidence 56665655443
No 41
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=45.19 E-value=14 Score=20.32 Aligned_cols=14 Identities=7% Similarity=0.455 Sum_probs=8.3
Q ss_pred HHHHHHHHHhheee
Q 042256 21 LIILIVIAGALFYL 34 (196)
Q Consensus 21 li~l~~~~~~i~~l 34 (196)
++.++++.+++||+
T Consensus 11 vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 11 VVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHH
Confidence 44455666677764
No 42
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=45.13 E-value=37 Score=19.58 Aligned_cols=20 Identities=35% Similarity=0.781 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhheeeEeecC
Q 042256 20 LLIILIVIAGALFYLWFDPK 39 (196)
Q Consensus 20 ~li~l~~~~~~i~~lv~rP~ 39 (196)
++++++-+++.++|+++.++
T Consensus 27 ~~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 27 IVILFFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHHHHHhheEEEeCC
Confidence 34445567789999988764
No 43
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=44.77 E-value=13 Score=19.87 Aligned_cols=20 Identities=15% Similarity=0.105 Sum_probs=11.4
Q ss_pred HHHHHHHHHhheeeEeecCC
Q 042256 21 LIILIVIAGALFYLWFDPKL 40 (196)
Q Consensus 21 li~l~~~~~~i~~lv~rP~~ 40 (196)
.++.+++.+-+++-.+||.+
T Consensus 9 ~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 9 GAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 33444555556666678854
No 44
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=43.94 E-value=19 Score=28.77 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=5.2
Q ss_pred EeecCCcEE
Q 042256 35 WFDPKLPVF 43 (196)
Q Consensus 35 v~rP~~P~f 43 (196)
+++||....
T Consensus 182 ~~K~K~~~~ 190 (218)
T PF14283_consen 182 FYKPKQEEK 190 (218)
T ss_pred Eeccccccc
Confidence 457776543
No 45
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=42.36 E-value=1.3e+02 Score=21.94 Aligned_cols=57 Identities=9% Similarity=-0.083 Sum_probs=34.9
Q ss_pred eeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeecccCCCeeecCCCceEEEEE
Q 042256 63 YLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIE 123 (196)
Q Consensus 63 ~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~~p~f~q~~~~~~~v~~~ 123 (196)
....++.++|++||.+.+-.+...+ +-|.+.+|..+-+..-.|...+|=.+..+-+.
T Consensus 20 ~~~~~Lt~tLSiRNtd~~~~i~i~~----v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~ 76 (125)
T PF11322_consen 20 HRPFNLTATLSIRNTDPTDPIYITS----VDYYDTDGKLVRSYLDKPIYLKPLATTEFVVE 76 (125)
T ss_pred CceEeEEEEEEEEcCCCCCCEEEEE----EEEECCCCeEhHHhcCCCeEcCCCceEEEEEe
Confidence 3467789999999977655565544 33442446666444445666777666554443
No 46
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=41.66 E-value=1.6e+02 Score=22.46 Aligned_cols=15 Identities=0% Similarity=0.073 Sum_probs=10.2
Q ss_pred eccccCCcchhHhhc
Q 042256 126 TDELVEDGMGPRLMS 140 (196)
Q Consensus 126 ~~~~l~~~~~~~l~~ 140 (196)
+....++++++.|++
T Consensus 131 dekYmPpEv~~al~~ 145 (159)
T PRK13150 131 DENYTPPEVEKAMQE 145 (159)
T ss_pred CCCCCCHHHHHHHHH
Confidence 666677777766654
No 47
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=41.06 E-value=14 Score=26.27 Aligned_cols=18 Identities=44% Similarity=0.894 Sum_probs=10.5
Q ss_pred HHhheeeEeecC--CcEEEe
Q 042256 28 AGALFYLWFDPK--LPVFHL 45 (196)
Q Consensus 28 ~~~i~~lv~rP~--~P~f~v 45 (196)
+++++||++--+ .|.|.+
T Consensus 9 ~~li~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 9 AALIFWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHHHHHccccCceEEEE
Confidence 347777776443 366554
No 48
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=41.03 E-value=1.4e+02 Score=21.75 Aligned_cols=59 Identities=5% Similarity=-0.005 Sum_probs=34.0
Q ss_pred EEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeecccC
Q 042256 43 FHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSV 107 (196)
Q Consensus 43 f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~~ 107 (196)
-.++.+++++..+.... .-...+.++.+++|.. .....|-.++++++= .+|..+++-.+
T Consensus 48 ~~~~~l~i~~~~~~~~~---~~~~~l~v~g~i~N~~-~~~~~~P~l~l~L~D--~~g~~l~~r~~ 106 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVP---DGPGVLVVSGTIRNRA-DFPQALPALELSLLD--AQGQPLARRVF 106 (149)
T ss_pred cCcceEEEeeeeEEeec---CCCCEEEEEEEEEeCC-CCcccCceEEEEEEC--CCCCEEEEEEE
Confidence 34555555544444322 1244577888999977 346677676666662 23666665443
No 49
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=40.83 E-value=47 Score=23.04 Aligned_cols=17 Identities=24% Similarity=0.553 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhheeeEe
Q 042256 20 LLIILIVIAGALFYLWF 36 (196)
Q Consensus 20 ~li~l~~~~~~i~~lv~ 36 (196)
.+++++.++-+|.|+++
T Consensus 70 s~v~IlVily~IyYFVI 86 (101)
T PF06024_consen 70 SFVCILVILYAIYYFVI 86 (101)
T ss_pred HHHHHHHHHhhheEEEE
Confidence 33334444445566665
No 50
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=40.61 E-value=20 Score=21.42 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=10.9
Q ss_pred HHHHHHHhheeeEeecCC
Q 042256 23 ILIVIAGALFYLWFDPKL 40 (196)
Q Consensus 23 ~l~~~~~~i~~lv~rP~~ 40 (196)
.++++.+++++.+++|+.
T Consensus 18 ~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 18 YLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 344455566666788853
No 51
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=40.48 E-value=1.1e+02 Score=23.17 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhheeeEe
Q 042256 20 LLIILIVIAGALFYLWF 36 (196)
Q Consensus 20 ~li~l~~~~~~i~~lv~ 36 (196)
++++++++.+..+|+..
T Consensus 26 ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 26 IVLLALAGAGYFFWFGS 42 (159)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 34444445556666654
No 52
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=40.35 E-value=35 Score=25.69 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhheeeEeecCCcEEE
Q 042256 18 IVLLIILIVIAGALFYLWFDPKLPVFH 44 (196)
Q Consensus 18 ~~~li~l~~~~~~i~~lv~rP~~P~f~ 44 (196)
+++|++|+..+++.+|-+=+...-.|+
T Consensus 16 i~Ll~lLl~cgiGcvwhwkhr~~~~ft 42 (158)
T PF11770_consen 16 ISLLLLLLLCGIGCVWHWKHRDSTRFT 42 (158)
T ss_pred HHHHHHHHHHhcceEEEeeccCccccc
Confidence 334444445556667766554333333
No 53
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=39.99 E-value=63 Score=22.17 Aligned_cols=61 Identities=11% Similarity=0.038 Sum_probs=35.3
Q ss_pred ceeeEEEEEEEEEeCCCCee-E-EEEeCcEEEEEEecCCCeeeecc--cCCCeeecCCCceEEEEEEe
Q 042256 62 TYLHAATLTRVEARNPNGKL-R-YYYRHTDVEVTAGKDKEIDLGTG--SVPGFTQGTKNARSLKIETK 125 (196)
Q Consensus 62 ~~l~~~~~~~l~v~NPN~~~-~-i~Y~~~~~~v~y~~~~~~~lg~~--~~p~f~q~~~~~~~v~~~~~ 125 (196)
..+.-++.+.++++||...- . +...=....++|. |...... .......+|+++..+.+.+.
T Consensus 11 ~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt---G~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 11 PVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT---GLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp EBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECT---TTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred ccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEEC---CcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 35667899999999997432 1 2222233455676 7544222 24556677888888877775
No 54
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=38.91 E-value=77 Score=21.97 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=22.8
Q ss_pred cEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEe---CcEEEEEEecCCCe
Q 042256 41 PVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYR---HTDVEVTAGKDKEI 100 (196)
Q Consensus 41 P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~---~~~~~v~y~~~~~~ 100 (196)
|.+.++.+.+.. + +...+++++...++ .||+ +.+++. ...+.+.+.+++|.
T Consensus 39 Pa~~I~~v~v~~---n---g~~v~~~~~~~siS-~NP~--l~F~~~~~~~g~l~v~~~Dn~G~ 92 (100)
T PF08770_consen 39 PAHFIEEVEVTY---N---GKPVFRADWGPSIS-ENPY--LRFSFKGKKSGTLTVTWTDNKGN 92 (100)
T ss_dssp --B-EEEEEEEE---T---TEEEEEEEE-TTB--SS-E--EEEEEEESSSEEEEEEEEETTS-
T ss_pred ChHheEEEEEEE---C---CEEEEEEEeCCccc-CCCc--EEEEEecCCCcEEEEEEEECCCC
Confidence 455555555431 1 12456666666655 6776 444443 34666666644443
No 55
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=38.37 E-value=1.6e+02 Score=21.56 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=56.5
Q ss_pred CCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEeC--cEEEEEEecCCCeeeecccCCCeeecCCC
Q 042256 39 KLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRH--TDVEVTAGKDKEIDLGTGSVPGFTQGTKN 116 (196)
Q Consensus 39 ~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~--~~~~v~y~~~~~~~lg~~~~p~f~q~~~~ 116 (196)
-.|.+.+.++.....+ ..-.+.+.++||. +....+ +++.|+.. +.+..+.+....++...|.+
T Consensus 26 ~~p~L~l~~v~~~~~n-----------~~~~i~~~l~N~~---~~~l~~~~v~a~V~~~-~~~k~~~~~~~~~~~mAPNS 90 (140)
T PF11797_consen 26 VPPKLKLGKVKPGQIN-----------GRNVIQANLQNPQ---PAILKKLTVDAKVTKK-GSKKVLYTFKKENMQMAPNS 90 (140)
T ss_pred cCcccEEeeeeeeEEC-----------CeeEEEEEEECCC---chhhcCcEEEEEEEEC-CCCeEEEEeeccCCEECCCC
Confidence 4577777766655443 3446778899998 444544 44555555 33457777778888888876
Q ss_pred ceEEEEEEeeccccCCcchhHhhccccCCcEEEEEEEEEEEE
Q 042256 117 ARSLKIETKTDELVEDGMGPRLMSHHKSKDLVVNVVVKTTVA 158 (196)
Q Consensus 117 ~~~v~~~~~~~~~l~~~~~~~l~~d~~~g~v~l~v~v~~~~r 158 (196)
.-.+.+.+ .+ +.+..|.+.+++.++..-+
T Consensus 91 ~f~~~i~~------~~-------~~lk~G~Y~l~~~~~~~~~ 119 (140)
T PF11797_consen 91 NFNFPIPL------GG-------KKLKPGKYTLKITAKSGKK 119 (140)
T ss_pred eEEeEecC------CC-------cCccCCEEEEEEEEEcCCc
Confidence 64433322 11 1346788888888766543
No 56
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=37.44 E-value=44 Score=25.41 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=14.6
Q ss_pred EEEEEeCCCCeeEEEEeCcEEEEEEe
Q 042256 70 TRVEARNPNGKLRYYYRHTDVEVTAG 95 (196)
Q Consensus 70 ~~l~v~NPN~~~~i~Y~~~~~~v~y~ 95 (196)
+++....++ +.+|=...+++.+.
T Consensus 76 fvvNl~~~~---~~ryLkv~i~l~~~ 98 (170)
T PRK05696 76 FVFNVPGNG---RDRLVQIKVQLMVR 98 (170)
T ss_pred EEEEecCCC---CceEEEEEEEEEEC
Confidence 444444444 45787777788776
No 57
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=36.80 E-value=12 Score=29.02 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=7.4
Q ss_pred EEeCcEEEEEEe
Q 042256 84 YYRHTDVEVTAG 95 (196)
Q Consensus 84 ~Y~~~~~~v~y~ 95 (196)
+|=...+++.+.
T Consensus 103 ryLkv~i~Le~~ 114 (182)
T PRK08455 103 RYLKTSISLELS 114 (182)
T ss_pred eEEEEEEEEEEC
Confidence 666666666655
No 58
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=36.39 E-value=1.5e+02 Score=21.05 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=33.5
Q ss_pred eeecccCCCeeecCCCceEEEEEEeeccccC-CcchhHhhccc-cCCcEEEEEEEEEEEEEEEeEEEec
Q 042256 101 DLGTGSVPGFTQGTKNARSLKIETKTDELVE-DGMGPRLMSHH-KSKDLVVNVVVKTTVAVIVQGRKTR 167 (196)
Q Consensus 101 ~lg~~~~p~f~q~~~~~~~v~~~~~~~~~l~-~~~~~~l~~d~-~~g~v~l~v~v~~~~r~kvg~~~s~ 167 (196)
++|...+|+....+.++..+ ..+...+. .+.-.++..++ .+..+.+.++.+ ...++|.++..
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~---~~~~l~i~d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~ 65 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISI---IDQTLTITDQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFS 65 (125)
T ss_pred ceEEEECCCEEecCCceEEE---eeeeEEecCHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEE
Confidence 57888899999833332222 11222222 23334555554 444566655554 47788887543
No 59
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.11 E-value=17 Score=26.31 Aligned_cols=21 Identities=19% Similarity=0.014 Sum_probs=5.5
Q ss_pred HHHhheeeEee-cCCcEEEeee
Q 042256 27 IAGALFYLWFD-PKLPVFHLQS 47 (196)
Q Consensus 27 ~~~~i~~lv~r-P~~P~f~v~~ 47 (196)
++++|+|++-| -|++...++.
T Consensus 80 ~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 80 IILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHhccCCCCCCC
Confidence 34445555543 3555555544
No 60
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=35.32 E-value=57 Score=22.70 Aligned_cols=24 Identities=13% Similarity=0.294 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHhheeeE
Q 042256 12 CCFCFFIVLLIILIVIAGALFYLW 35 (196)
Q Consensus 12 ~c~~~~~~~li~l~~~~~~i~~lv 35 (196)
-.+++.++.+++..|+.+.+++.+
T Consensus 19 eIfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 19 EIFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666667666666544
No 61
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=35.25 E-value=98 Score=25.35 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=8.2
Q ss_pred EEEEecCCCeeeeccc
Q 042256 91 EVTAGKDKEIDLGTGS 106 (196)
Q Consensus 91 ~v~y~~~~~~~lg~~~ 106 (196)
.|.|+ |.++|...
T Consensus 50 ~V~~~---Gv~VG~V~ 62 (291)
T TIGR00996 50 KVRVR---GVPVGKVT 62 (291)
T ss_pred ceEEc---ceEEEEEE
Confidence 55666 77777553
No 62
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=34.82 E-value=28 Score=26.42 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=9.7
Q ss_pred HHHHHHHhheeeEeec
Q 042256 23 ILIVIAGALFYLWFDP 38 (196)
Q Consensus 23 ~l~~~~~~i~~lv~rP 38 (196)
+++++++.++|+.+||
T Consensus 13 ~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 13 FLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHhhhhccCC
Confidence 3334333777778888
No 63
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=34.75 E-value=31 Score=32.96 Aligned_cols=28 Identities=32% Similarity=0.722 Sum_probs=0.0
Q ss_pred ccccchhH-----------------HHHHHHHHHHHHHHHHhhee
Q 042256 6 CCRVCCCC-----------------FCFFIVLLIILIVIAGALFY 33 (196)
Q Consensus 6 ~~~~~c~c-----------------~~~~~~~li~l~~~~~~i~~ 33 (196)
|||+|||= .|..+.++++.+++++.+|+
T Consensus 128 ccc~C~~rc~~r~~~~~~~~~a~kR~~~~l~Llvl~i~~ligv~~ 172 (865)
T KOG4331|consen 128 CCCRCCRRCGGRIKSALKQDDACKRPCCELELLVLAIELLIGVFR 172 (865)
T ss_pred heeeeHhhhcCCCCchhccCcHhhhhHHHHHHHHHHHHHHHHHHH
No 64
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=34.34 E-value=18 Score=22.79 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=10.8
Q ss_pred HHHHHHhheeeEeecCC
Q 042256 24 LIVIAGALFYLWFDPKL 40 (196)
Q Consensus 24 l~~~~~~i~~lv~rP~~ 40 (196)
+.+...++.|.+|||+.
T Consensus 18 ~~l~fiavi~~ayr~~~ 34 (60)
T COG4736 18 FTLFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 33344566777899954
No 65
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=34.05 E-value=53 Score=26.90 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhheeeEeecCCcEEEeeeeEEeeEE
Q 042256 20 LLIILIVIAGALFYLWFDPKLPVFHLQSFSFRHFN 54 (196)
Q Consensus 20 ~li~l~~~~~~i~~lv~rP~~P~f~v~~~~v~~f~ 54 (196)
..++++++.++++|....++.|-|.+..+.+++=.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~Gn~ 71 (269)
T COG1589 37 LYLVLLLLVLVVLWVLILLSLPYFPIRKVSVSGNN 71 (269)
T ss_pred HHHHHHHHHHHHHheehhhhcCCccceEEEEecCc
Confidence 34444556677888888999999999999988643
No 66
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.65 E-value=1.6e+02 Score=25.18 Aligned_cols=57 Identities=9% Similarity=0.122 Sum_probs=25.8
Q ss_pred EEEEecCCCeeeecccCCCeeecCCCceEEEEEEeeccccCCcchhHhhccccCCcEEEEE
Q 042256 91 EVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETKTDELVEDGMGPRLMSHHKSKDLVVNV 151 (196)
Q Consensus 91 ~v~y~~~~~~~lg~~~~p~f~q~~~~~~~v~~~~~~~~~l~~~~~~~l~~d~~~g~v~l~v 151 (196)
.|.|+ |..+|...-=.... ......+.+.+..+.+++.+....+...---|.-.+++
T Consensus 58 ~V~~~---GV~VG~V~~I~~~~-~~~~~~v~~~id~~~~Ip~~s~A~I~~~gL~G~~yIeL 114 (359)
T COG1463 58 PVRYR---GVKVGKVASISLDP-KPNGARVTLEIDSDYPIPADSTASIRTTGLLGEKYIEL 114 (359)
T ss_pred ceEEc---CEEeEEEEEEEecC-CCCceEEEEEecCCcccCCCceeeeeeccccceeEEEe
Confidence 56677 77777664111111 22222333444434466665544444433334333333
No 67
>PRK01844 hypothetical protein; Provisional
Probab=33.47 E-value=48 Score=21.68 Aligned_cols=14 Identities=7% Similarity=0.161 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhh
Q 042256 18 IVLLIILIVIAGAL 31 (196)
Q Consensus 18 ~~~li~l~~~~~~i 31 (196)
+.++.+++|++++.
T Consensus 9 l~I~~li~G~~~Gf 22 (72)
T PRK01844 9 VGVVALVAGVALGF 22 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555544443
No 68
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.47 E-value=66 Score=20.93 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHh
Q 042256 17 FIVLLIILIVIAGA 30 (196)
Q Consensus 17 ~~~~li~l~~~~~~ 30 (196)
+++++.+++|++++
T Consensus 8 l~ivl~ll~G~~~G 21 (71)
T COG3763 8 LLIVLALLAGLIGG 21 (71)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455566666555
No 69
>PRK00523 hypothetical protein; Provisional
Probab=30.43 E-value=65 Score=21.08 Aligned_cols=13 Identities=0% Similarity=-0.026 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q 042256 18 IVLLIILIVIAGA 30 (196)
Q Consensus 18 ~~~li~l~~~~~~ 30 (196)
+.++.+++|+++.
T Consensus 10 l~i~~li~G~~~G 22 (72)
T PRK00523 10 LGIPLLIVGGIIG 22 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444454443
No 70
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=28.50 E-value=65 Score=24.44 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=7.3
Q ss_pred cCCcEEEeee
Q 042256 38 PKLPVFHLQS 47 (196)
Q Consensus 38 P~~P~f~v~~ 47 (196)
|++|++++..
T Consensus 32 p~~p~It~~s 41 (161)
T PF10969_consen 32 PQDPEITAYS 41 (161)
T ss_pred CCCcEEEEEE
Confidence 7788887764
No 71
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=28.21 E-value=29 Score=24.07 Aligned_cols=15 Identities=33% Similarity=0.622 Sum_probs=8.9
Q ss_pred HHHHhheee-EeecCC
Q 042256 26 VIAGALFYL-WFDPKL 40 (196)
Q Consensus 26 ~~~~~i~~l-v~rP~~ 40 (196)
.++.++||+ ++||..
T Consensus 16 vl~~~ifyFli~RPQr 31 (97)
T COG1862 16 VLIFAIFYFLIIRPQR 31 (97)
T ss_pred HHHHHHHHHhhcCHHH
Confidence 334455665 789953
No 72
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=28.13 E-value=2.6e+02 Score=20.92 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=8.5
Q ss_pred eccccCCcchhHhhcc
Q 042256 126 TDELVEDGMGPRLMSH 141 (196)
Q Consensus 126 ~~~~l~~~~~~~l~~d 141 (196)
++.-.++++.+.|++.
T Consensus 124 ~skY~p~ev~~~~~~~ 139 (148)
T PRK13254 124 DENYMPKEVADALKKA 139 (148)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 4445555555555543
No 73
>PHA02650 hypothetical protein; Provisional
Probab=27.83 E-value=30 Score=23.02 Aligned_cols=9 Identities=11% Similarity=0.375 Sum_probs=3.3
Q ss_pred HHhheeeEe
Q 042256 28 AGALFYLWF 36 (196)
Q Consensus 28 ~~~i~~lv~ 36 (196)
+++..++.+
T Consensus 62 ~~l~~flYL 70 (81)
T PHA02650 62 VALFSFFVF 70 (81)
T ss_pred HHHHHHHHH
Confidence 333333333
No 74
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=27.31 E-value=32 Score=24.46 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=6.9
Q ss_pred HhheeeEeecCC
Q 042256 29 GALFYLWFDPKL 40 (196)
Q Consensus 29 ~~i~~lv~rP~~ 40 (196)
++..++++||..
T Consensus 15 ~i~yF~~iRPQk 26 (109)
T PRK05886 15 GGFMYFASRRQR 26 (109)
T ss_pred HHHHHHHccHHH
Confidence 344455678853
No 75
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=27.14 E-value=92 Score=22.25 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhheeeEeec
Q 042256 13 CFCFFIVLLIILIVIAGALFYLWFDP 38 (196)
Q Consensus 13 c~~~~~~~li~l~~~~~~i~~lv~rP 38 (196)
.+..++++|++.++++.++++|+++.
T Consensus 63 ffvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 63 FFVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHheeec
Confidence 34455666777777777777777654
No 76
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=27.06 E-value=3.1e+02 Score=23.85 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=20.2
Q ss_pred EEEEecCCCeeeeccc-CCCeeecCCCceEEEEEEe-eccccCCcchhHh
Q 042256 91 EVTAGKDKEIDLGTGS-VPGFTQGTKNARSLKIETK-TDELVEDGMGPRL 138 (196)
Q Consensus 91 ~v~y~~~~~~~lg~~~-~p~f~q~~~~~~~v~~~~~-~~~~l~~~~~~~l 138 (196)
.|.|+ |.++|... +.. .+ +...+.+++. ++..++.+....+
T Consensus 135 ~Vr~~---GV~VG~V~~I~l---~~-~~V~V~~~I~~~~~~Ip~ds~A~I 177 (370)
T PLN03094 135 PVRIR---GVTVGNVVRVRP---SL-EKIDVVVEVEDDKIVIPRNSLVEV 177 (370)
T ss_pred ceEEc---CEEeeEEEEEEe---cC-CeEEEEEEEecCceecCCCCEEEE
Confidence 56666 77777664 322 11 2223344444 3456665544333
No 77
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=26.00 E-value=31 Score=22.80 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=9.8
Q ss_pred HHHHHHHHHhheeeEee
Q 042256 21 LIILIVIAGALFYLWFD 37 (196)
Q Consensus 21 li~l~~~~~~i~~lv~r 37 (196)
.++++.++++..|+++|
T Consensus 9 plivf~ifVap~WL~lH 25 (75)
T PF06667_consen 9 PLIVFMIFVAPIWLILH 25 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455677777764
No 78
>PF11606 AlcCBM31: Family 31 carbohydrate binding protein; InterPro: IPR021016 Beta-1,3-xylan is a homopolymer of b-1,3-linked D-xylose and is a polysaccharide peculiar to marine algae. Beta-1,3-xylanase is a beta-1,3-xylan hydrolyzing enzyme [].; GO: 0033905 xylan endo-1,3-beta-xylosidase activity; PDB: 2COV_F.
Probab=25.90 E-value=1e+02 Score=20.90 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=22.8
Q ss_pred eCCCCeeEEEEe-CcEEEEEEecCCCeeeeccc--CCCeeec
Q 042256 75 RNPNGKLRYYYR-HTDVEVTAGKDKEIDLGTGS--VPGFTQG 113 (196)
Q Consensus 75 ~NPN~~~~i~Y~-~~~~~v~y~~~~~~~lg~~~--~p~f~q~ 113 (196)
.||+..++++|- +.+++|++. |+|=..|..- +.+...+
T Consensus 4 e~c~~dFg~~Yvsds~ievfH~-d~gWsAgwnY~CLd~yCl~ 44 (93)
T PF11606_consen 4 ENCSEDFGYNYVSDSEIEVFHK-DNGWSAGWNYLCLDDYCLS 44 (93)
T ss_dssp GGGTSSEEEEEEETTEEEEEEE-------SSEEEEETTEEEE
T ss_pred CCcchhhCeeeecCceEEEEEe-cCCccceeeEEEecCeecc
Confidence 588999999995 689999988 4332222222 4555544
No 79
>TIGR01107 Na_K_ATPase_bet Sodium Potassium ATPase beta subunit. This model describes the Na+/K+ ATPase beta subunit in eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium pump) is intimately associated with the plasma membrane. It couples the energy released by the hydrolysis of ATP to extrude 3 Na+ ions, with the concomitant uptake of 2K+ ions, against their ionic gradients.
Probab=25.85 E-value=44 Score=27.99 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhheeeE---eecCCcEEEee
Q 042256 18 IVLLIILIVIAGALFYLW---FDPKLPVFHLQ 46 (196)
Q Consensus 18 ~~~li~l~~~~~~i~~lv---~rP~~P~f~v~ 46 (196)
+++=++|+|+.++.+|++ +.|+.|+++..
T Consensus 44 liFY~~La~~F~~~m~v~l~Tl~~~~Pk~q~~ 75 (289)
T TIGR01107 44 LVFYGCLAGIFIGTIQVMLQTISDFTPKYQDR 75 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcC
Confidence 334445555555555444 46888887665
No 80
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=25.74 E-value=58 Score=26.69 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=11.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHh
Q 042256 9 VCCCCFCFFIVLLIILIVIAGA 30 (196)
Q Consensus 9 ~~c~c~~~~~~~li~l~~~~~~ 30 (196)
|+.++++..++++++.+|+.++
T Consensus 197 R~i~f~llgllfliiaigltvG 218 (256)
T PF09788_consen 197 RAIIFFLLGLLFLIIAIGLTVG 218 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555555555555555443
No 81
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=25.55 E-value=74 Score=19.68 Aligned_cols=9 Identities=0% Similarity=-0.001 Sum_probs=6.0
Q ss_pred EeecCCcEE
Q 042256 35 WFDPKLPVF 43 (196)
Q Consensus 35 v~rP~~P~f 43 (196)
.+-|+-|.+
T Consensus 31 ~l~qq~~~y 39 (61)
T PF06692_consen 31 SLGQQGNTY 39 (61)
T ss_pred hhccCCCee
Confidence 467777765
No 82
>PRK14758 hypothetical protein; Provisional
Probab=25.04 E-value=94 Score=16.08 Aligned_cols=15 Identities=40% Similarity=0.820 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhheee
Q 042256 20 LLIILIVIAGALFYL 34 (196)
Q Consensus 20 ~li~l~~~~~~i~~l 34 (196)
+++++-+++++-||+
T Consensus 12 ivlIlCalia~~fy~ 26 (27)
T PRK14758 12 IILILCALIAARFYL 26 (27)
T ss_pred HHHHHHHHHHHHhcc
Confidence 333444455555543
No 83
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=24.83 E-value=1.5e+02 Score=20.96 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=23.0
Q ss_pred CCCCeeEEEEeC-cEEEEEEecCCCeeeecccCCCeee
Q 042256 76 NPNGKLRYYYRH-TDVEVTAGKDKEIDLGTGSVPGFTQ 112 (196)
Q Consensus 76 NPN~~~~i~Y~~-~~~~v~y~~~~~~~lg~~~~p~f~q 112 (196)
||| .+-++|++ .++++.|. |..+.-+.-..|.+
T Consensus 40 ~pN-Yvf~~FEnG~tvsv~~~---gs~~kI~~~Dd~r~ 73 (121)
T PF06919_consen 40 TPN-YVFMRFENGITVSVTYN---GSIFKIGLDDDHRE 73 (121)
T ss_pred CCC-EEEEEecCCCEEEEEec---CcEEEEEecCchhh
Confidence 999 78899985 68999998 65554444444444
No 84
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.53 E-value=51 Score=28.35 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhheeeEee
Q 042256 15 CFFIVLLIILIVIAGALFYLWFD 37 (196)
Q Consensus 15 ~~~~~~li~l~~~~~~i~~lv~r 37 (196)
+.+|++|+|+=.|+.+|.|+++.
T Consensus 229 l~~IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 229 LAFILVLAIVRLILFGITWILTG 251 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344444444455666676665
No 85
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.06 E-value=50 Score=24.86 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhheeeEeecC
Q 042256 19 VLLIILIVIAGALFYLWFDPK 39 (196)
Q Consensus 19 ~~li~l~~~~~~i~~lv~rP~ 39 (196)
++++++++.+++.+|....|.
T Consensus 14 viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 14 VIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred HHHHHHHHHHHHHHhHhcCcc
Confidence 334444556677788888884
No 86
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=24.01 E-value=64 Score=29.38 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=17.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhheeeEeec
Q 042256 9 VCCCCFCFFIVLLIILIVIAGALFYLWFDP 38 (196)
Q Consensus 9 ~~c~c~~~~~~~li~l~~~~~~i~~lv~rP 38 (196)
+-|..|++.+.+++|+++++.++..++|++
T Consensus 475 KanK~LWIsvAliVLLAaLlSfLtg~~fq~ 504 (538)
T PF05781_consen 475 KANKVLWISVALIVLLAALLSFLTGLFFQR 504 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 334555555555556666666666666654
No 87
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=23.90 E-value=87 Score=25.07 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=12.4
Q ss_pred HHhheeeEeecCCcEEEee
Q 042256 28 AGALFYLWFDPKLPVFHLQ 46 (196)
Q Consensus 28 ~~~i~~lv~rP~~P~f~v~ 46 (196)
+++-++..|+-.+|+=.-.
T Consensus 172 ~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 172 IGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred hhcceEEEEEEeccccccc
Confidence 3445666788888865544
No 88
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.66 E-value=1.7e+02 Score=23.55 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=12.9
Q ss_pred EEEEeCCCCeeEEEEeCcEEEE
Q 042256 71 RVEARNPNGKLRYYYRHTDVEV 92 (196)
Q Consensus 71 ~l~v~NPN~~~~i~Y~~~~~~v 92 (196)
.++++||. -.-+.+...++..
T Consensus 166 ~l~v~Npt-py~vtl~~~~l~~ 186 (235)
T COG3121 166 LLTVKNPT-PYYVTLANLTLNV 186 (235)
T ss_pred EEEEECCC-CcEEEEEEEEEee
Confidence 68899998 3445555444443
No 89
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=23.64 E-value=78 Score=22.48 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=8.7
Q ss_pred HHhheeeEeecCCcE
Q 042256 28 AGALFYLWFDPKLPV 42 (196)
Q Consensus 28 ~~~i~~lv~rP~~P~ 42 (196)
.+.+.|.+.++..|.
T Consensus 18 ~~~vt~~l~~~~~p~ 32 (111)
T PF09677_consen 18 SAWVTWLLASQPQPR 32 (111)
T ss_pred HHHHHHHHHhcCCCc
Confidence 345556666666664
No 90
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=23.29 E-value=1.4e+02 Score=16.85 Aligned_cols=8 Identities=13% Similarity=0.392 Sum_probs=4.2
Q ss_pred HhheeeEe
Q 042256 29 GALFYLWF 36 (196)
Q Consensus 29 ~~i~~lv~ 36 (196)
.++||+++
T Consensus 25 liif~f~l 32 (43)
T PF11395_consen 25 LIIFWFSL 32 (43)
T ss_pred HHHHHHHH
Confidence 34556554
No 91
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=23.12 E-value=70 Score=22.04 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=5.2
Q ss_pred HHHHhheeeEe
Q 042256 26 VIAGALFYLWF 36 (196)
Q Consensus 26 ~~~~~i~~lv~ 36 (196)
+++++++|+++
T Consensus 81 ~lv~~l~w~f~ 91 (96)
T PTZ00382 81 GLVGFLCWWFV 91 (96)
T ss_pred HHHHHHhheeE
Confidence 34445555544
No 92
>KOG4101 consensus Cysteine-rich hydrophobic proteins [General function prediction only]
Probab=22.84 E-value=24 Score=26.26 Aligned_cols=10 Identities=50% Similarity=1.710 Sum_probs=6.2
Q ss_pred ccccchhHHH
Q 042256 6 CCRVCCCCFC 15 (196)
Q Consensus 6 ~~~~~c~c~~ 15 (196)
|.|.||||..
T Consensus 98 CGc~cCCCtl 107 (175)
T KOG4101|consen 98 CGCLCCCCTL 107 (175)
T ss_pred hhHHHHhhcc
Confidence 4566777754
No 93
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=22.77 E-value=66 Score=17.36 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.3
Q ss_pred HHHHhheeeEe
Q 042256 26 VIAGALFYLWF 36 (196)
Q Consensus 26 ~~~~~i~~lv~ 36 (196)
+.++.+|+-++
T Consensus 12 ~tlgiiFFAIf 22 (31)
T PRK11875 12 LALVTLFFAIA 22 (31)
T ss_pred HHHHHHHHhhh
Confidence 33334444333
No 94
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=22.74 E-value=2.6e+02 Score=19.49 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=7.5
Q ss_pred CCcEEEeeeeEEee
Q 042256 39 KLPVFHLQSFSFRH 52 (196)
Q Consensus 39 ~~P~f~v~~~~v~~ 52 (196)
+.|..++...-++.
T Consensus 31 ~aP~~sv~a~Vv~K 44 (110)
T PF10694_consen 31 NAPVRSVPATVVDK 44 (110)
T ss_dssp ---EEEEEEEEEEE
T ss_pred CCCcEEEEEEEEEe
Confidence 45777777666654
No 95
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=22.54 E-value=3.7e+02 Score=21.38 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=28.7
Q ss_pred CceeeEEEEEEEEEeCCCCeeEEEEe--CcEEEEEEecCCCeee
Q 042256 61 GTYLHAATLTRVEARNPNGKLRYYYR--HTDVEVTAGKDKEIDL 102 (196)
Q Consensus 61 ~~~l~~~~~~~l~v~NPN~~~~i~Y~--~~~~~v~y~~~~~~~l 102 (196)
+-.+.+.-+.++.++=|| ++.+.+. ..+.+++|. |..+
T Consensus 34 gqklq~~~~~~v~v~RPd-klr~~~~gd~~~~~~~yD---Gkt~ 73 (214)
T PF09865_consen 34 GQKLQFSSSGTVTVQRPD-KLRIDRRGDGADREFYYD---GKTF 73 (214)
T ss_pred CceEEEEEEEEEEEeCCC-eEEEEEEcCCcceEEEEC---CCEE
Confidence 456777778999999999 7888885 356778887 6544
No 96
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=22.46 E-value=55 Score=25.58 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=9.9
Q ss_pred ccccchhHHHHHHHHHH
Q 042256 6 CCRVCCCCFCFFIVLLI 22 (196)
Q Consensus 6 ~~~~~c~c~~~~~~~li 22 (196)
||-+.-+|++.+++.++
T Consensus 108 ~CNpl~R~~~SivfTi~ 124 (214)
T PF06837_consen 108 CCNPLIRGIFSIVFTIL 124 (214)
T ss_pred hcChHHHHHHHHHHHHH
Confidence 45566667776654333
No 97
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=22.01 E-value=1e+02 Score=17.71 Aligned_cols=9 Identities=22% Similarity=1.169 Sum_probs=4.7
Q ss_pred hheeeEeec
Q 042256 30 ALFYLWFDP 38 (196)
Q Consensus 30 ~i~~lv~rP 38 (196)
+++|+++|-
T Consensus 30 ~~l~~~~rR 38 (40)
T PF08693_consen 30 AFLFFWYRR 38 (40)
T ss_pred HHhheEEec
Confidence 445555553
No 98
>CHL00031 psbT photosystem II protein T
Probab=21.76 E-value=83 Score=17.24 Aligned_cols=8 Identities=38% Similarity=1.028 Sum_probs=3.2
Q ss_pred HhheeeEe
Q 042256 29 GALFYLWF 36 (196)
Q Consensus 29 ~~i~~lv~ 36 (196)
+++|+-++
T Consensus 15 gilFFAI~ 22 (33)
T CHL00031 15 GIIFFAIF 22 (33)
T ss_pred HHHHHhhe
Confidence 34444333
No 99
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=21.68 E-value=23 Score=25.83 Aligned_cols=26 Identities=8% Similarity=0.206 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhheeeEeecCCcEEEe
Q 042256 20 LLIILIVIAGALFYLWFDPKLPVFHL 45 (196)
Q Consensus 20 ~li~l~~~~~~i~~lv~rP~~P~f~v 45 (196)
.+++++|+++..+...+.++...+.+
T Consensus 57 ~vili~GvvvT~vays~n~~~si~~~ 82 (129)
T PF15099_consen 57 VVILIAGVVVTAVAYSFNSHGSIISI 82 (129)
T ss_pred HHHHHHhhHhheeeEeecCCcchhhh
Confidence 45566787777666667666654433
No 100
>PRK13031 preprotein translocase subunit SecB; Provisional
Probab=21.40 E-value=3.6e+02 Score=20.27 Aligned_cols=20 Identities=20% Similarity=0.472 Sum_probs=15.7
Q ss_pred CcEEEeeeeEEeeEEeecCC
Q 042256 40 LPVFHLQSFSFRHFNVSVKS 59 (196)
Q Consensus 40 ~P~f~v~~~~v~~f~~~~~~ 59 (196)
.|.|.++...+.+++..+++
T Consensus 6 ~p~f~I~~~YvKDlSFE~Pn 25 (149)
T PRK13031 6 QPQFQIQKVYVKDLSFSIPN 25 (149)
T ss_pred CCeeEeeeEEeeeecccCCC
Confidence 47888888888888887654
No 101
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.22 E-value=1.1e+02 Score=26.21 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=35.0
Q ss_pred CcEEEEEEecCCCeeeecccCCCeeecCCCceEEEEEEe--eccccCCcchhHhhccccCCcEEEEEEE
Q 042256 87 HTDVEVTAGKDKEIDLGTGSVPGFTQGTKNARSLKIETK--TDELVEDGMGPRLMSHHKSKDLVVNVVV 153 (196)
Q Consensus 87 ~~~~~v~y~~~~~~~lg~~~~p~f~q~~~~~~~v~~~~~--~~~~l~~~~~~~l~~d~~~g~v~l~v~v 153 (196)
.++++++|- . ....|+|.++.+..=....-+. +++.-.++++....+++.+|.+......
T Consensus 207 ~v~Vt~~~P---~----~~~tpGfE~En~tkP~~t~ii~g~ss~~~~e~~a~~~~~~~~rg~f~~~~~~ 268 (331)
T KOG1210|consen 207 GVHVTLYYP---P----DTLTPGFERENKTKPEETKIIEGGSSVIKCEEMAKAIVKGMKRGNFTVSLGF 268 (331)
T ss_pred ceEEEEEcC---C----CCCCCccccccccCchheeeecCCCCCcCHHHHHHHHHhHHhhcCeEEeech
Confidence 455566654 2 2345899988765433333333 3343345667777788888876665543
No 102
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.80 E-value=92 Score=20.68 Aligned_cols=10 Identities=20% Similarity=0.634 Sum_probs=4.5
Q ss_pred HhheeeEeec
Q 042256 29 GALFYLWFDP 38 (196)
Q Consensus 29 ~~i~~lv~rP 38 (196)
+..+|....|
T Consensus 21 ~~~~~~~~~~ 30 (85)
T PF11337_consen 21 GIYYFFNGNP 30 (85)
T ss_pred HHHHhhcCch
Confidence 3444444555
No 103
>PF14828 Amnionless: Amnionless
Probab=20.69 E-value=59 Score=28.87 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=10.4
Q ss_pred HHHHHHhheeeEeecCCcEE
Q 042256 24 LIVIAGALFYLWFDPKLPVF 43 (196)
Q Consensus 24 l~~~~~~i~~lv~rP~~P~f 43 (196)
+++++++++|+.+.|+.|.+
T Consensus 350 lv~ll~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 350 LVALLFGVILLYRLPRNPSL 369 (437)
T ss_pred HHHHHHHhheEEeccccccc
Confidence 33344444555555766654
No 104
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.67 E-value=1e+02 Score=21.98 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=9.5
Q ss_pred EEEEEEEEeCCCCe
Q 042256 67 ATLTRVEARNPNGK 80 (196)
Q Consensus 67 ~~~~~l~v~NPN~~ 80 (196)
-.+.++.+.|-|.+
T Consensus 53 ~y~y~i~ayn~~Gk 66 (113)
T COG5294 53 GYEYTITAYNKNGK 66 (113)
T ss_pred cceeeehhhccCCc
Confidence 35677888887753
No 105
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.37 E-value=1.2e+02 Score=27.90 Aligned_cols=22 Identities=18% Similarity=0.563 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhee--eEeecCCc
Q 042256 20 LLIILIVIAGALFY--LWFDPKLP 41 (196)
Q Consensus 20 ~li~l~~~~~~i~~--lv~rP~~P 41 (196)
++++++++++++|+ ..|.+-+|
T Consensus 17 vvv~i~~ilv~if~~~~~y~~a~~ 40 (548)
T COG2268 17 VVVVILVILVLIFFGKRFYIIARP 40 (548)
T ss_pred HHHHHHHHHHHHHHhheeEEecCC
Confidence 33334444555555 56666555
No 106
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=20.37 E-value=2.7e+02 Score=18.44 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=18.9
Q ss_pred eeEEEEeCcEEEEEEecCCCeeeecccCC
Q 042256 80 KLRYYYRHTDVEVTAGKDKEIDLGTGSVP 108 (196)
Q Consensus 80 ~~~i~Y~~~~~~v~y~~~~~~~lg~~~~p 108 (196)
++.-+|.+..+++++. +..+|...++
T Consensus 9 ~V~gkf~ng~l~LY~~---~e~IG~~~~~ 34 (76)
T PF10830_consen 9 KVTGKFKNGGLELYHD---NEMIGEIYMT 34 (76)
T ss_pred ceEEEecCCcEEEEec---cceeeeEccC
Confidence 5556667778888887 8888876554
No 107
>PF01589 Alpha_E1_glycop: Alphavirus E1 glycoprotein; InterPro: IPR002548 Alphaviruses are enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Semliki Forest and Sindbis viruses []. Alphaviruses consist of three structural proteins: the core nucleocapsid protein C, and the envelope proteins P62 and E1 that associate as a heterodimer. The viral membrane-anchored surface glycoproteins are responsible for receptor recognition and entry into target cells through membrane fusion. The proteolytic maturation of P62 into E2 (IPR000936 from INTERPRO) and E3 (IPR002533 from INTERPRO) causes a change in the viral surface. Together the E1, E2, and sometimes E3, glycoprotein "spikes" form an E1/E2 dimer or an E1/E2/E3 trimer, where E2 extends from the centre to the vertices, E1 fills the space between the vertices, and E3, if present, is at the distal end of the spike []. Upon exposure of the virus to the acidity of the endosome, E1 dissociates from E2 to form an E1 homotrimer, which is necessary for the fusion step to drive the cellular and viral membranes together. The alphaviral glycoprotein E1 is a class II viral fusion protein, which is structurally different from the class I fusion proteins found in influenza virus and HIV. The structure of the Semliki Forest virus revealed a structure that is similar to that of flaviviral glycoprotein E, with three structural domains in the same primary sequence arrangement []. This entry represents all three domains of the alphaviral E1 glycoprotein.; GO: 0004252 serine-type endopeptidase activity, 0019028 viral capsid, 0055036 virion membrane; PDB: 2YEW_L 1LD4_P 1Z8Y_K 3MUU_B 3N44_F 2XFB_F 3N42_F 2XFC_H 3N40_F 3N41_F ....
Probab=20.12 E-value=1.3e+02 Score=26.87 Aligned_cols=11 Identities=9% Similarity=-0.251 Sum_probs=4.3
Q ss_pred eEeecCCcEEE
Q 042256 34 LWFDPKLPVFH 44 (196)
Q Consensus 34 lv~rP~~P~f~ 44 (196)
...-|..|.|-
T Consensus 68 t~t~Pn~vg~P 78 (502)
T PF01589_consen 68 TTTMPNQVGIP 78 (502)
T ss_dssp EEEEES-TT-E
T ss_pred eeecCCCCCCc
Confidence 33446555443
Done!