Query 042256
Match_columns 196
No_of_seqs 114 out of 881
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 07:15:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.3 2.8E-06 9.6E-11 64.4 8.5 75 39-125 43-118 (174)
2 1xo8_A AT1G01470; structural g 98.1 2.4E-06 8.2E-11 63.4 3.8 101 39-156 20-123 (151)
3 3but_A Uncharacterized protein 98.0 8.9E-05 3E-09 53.9 10.7 88 65-162 17-107 (136)
4 3j1r_A Archaeal adhesion filam 70.9 1.6 5.6E-05 21.7 1.0 17 20-36 9-25 (26)
5 2knc_B Integrin beta-3; transm 41.9 18 0.00062 23.1 2.5 21 14-34 13-33 (79)
6 3p5s_A CD38 molecule; cyclic A 41.2 5.6 0.00019 31.8 0.0 6 143-148 192-197 (278)
7 3kdp_B Sodium/potassium-transp 40.5 7.5 0.00026 31.3 0.6 39 9-48 14-55 (286)
8 2k9j_B Integrin beta-3; transm 32.7 37 0.0013 19.0 2.5 16 18-33 16-31 (43)
9 1afo_A Glycophorin A; integral 32.6 15 0.00052 20.1 0.9 21 16-36 12-32 (40)
10 2l6w_A Beta-type platelet-deri 36.5 11 0.00037 20.8 0.0 15 29-43 24-38 (39)
11 3ixz_B Potassium-transporting 29.1 29 0.001 27.9 2.4 29 18-46 45-76 (290)
12 2zxe_B Na+,K+-ATPase beta subu 27.6 17 0.00058 29.5 0.7 37 9-45 32-71 (305)
13 2yev_C CAA3-type cytochrome ox 32.8 14 0.00046 22.5 0.0 27 25-51 11-37 (66)
14 1nrp_R Receptor based peptide 26.3 10 0.00036 18.2 -0.4 11 72-82 6-16 (26)
15 2jxp_A Putative lipoprotein B; 25.4 1.8E+02 0.006 20.4 6.5 42 39-80 50-93 (155)
16 1nro_R Receptor based peptide 25.3 16 0.00056 17.7 0.1 11 72-82 6-16 (27)
17 3s8f_C Cytochrome C oxidase po 23.5 33 0.0011 18.2 1.2 14 21-34 11-24 (34)
18 3arc_T Photosystem II reaction 22.1 25 0.00086 18.4 0.5 12 30-41 16-27 (32)
19 2v3s_A Serine/threonine-protei 21.7 1.1E+02 0.0038 20.2 3.7 19 68-86 3-22 (96)
20 2rdd_B UPF0092 membrane protei 21.6 14 0.00048 19.9 -0.6 6 33-38 18-23 (37)
21 2kj1_A BM2 protein; cytoplasmi 21.6 19 0.00065 22.6 -0.1 13 67-79 9-21 (89)
22 3p5s_A CD38 molecule; cyclic A 21.5 20 0.00067 28.7 0.0 7 33-39 30-36 (278)
23 2h3o_A MERF; membrane protein, 20.1 33 0.0011 20.8 0.8 25 11-35 9-33 (61)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.30 E-value=2.8e-06 Score=64.44 Aligned_cols=75 Identities=12% Similarity=0.156 Sum_probs=65.8
Q ss_pred CCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeecccCC-CeeecCCCc
Q 042256 39 KLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVP-GFTQGTKNA 117 (196)
Q Consensus 39 ~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~~p-~f~q~~~~~ 117 (196)
+.|++++.++++.+++. ...++.+.++++||| .+.+.+..++.++.-. |..++++..| ++..++.++
T Consensus 43 ~~PeV~v~~v~~~~~~l--------~~~~~~l~LrV~NPN-~~pLpi~gi~Y~L~vn---G~~lasG~s~~~~tIpa~g~ 110 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTR--------DGVDYHAKVSVKNPY-SQSIPICQISYILKSA---TRTIASGTIPDPGSLVGSGT 110 (174)
T ss_dssp CCCEEEEEEEEEEEECS--------SSEEEEEEEEEEECS-SSCCBCCSEEEEEEES---SSCEEEEEESCCCBCCSSEE
T ss_pred CCCEEEEEEeEEecccc--------ceEEEEEEEEEECCC-CCCccccceEEEEEEC---CEEEEEEecCCCceECCCCc
Confidence 78999999999987754 357789999999999 6899999999999998 9999999876 588999999
Q ss_pred eEEEEEEe
Q 042256 118 RSLKIETK 125 (196)
Q Consensus 118 ~~v~~~~~ 125 (196)
+.+.+.+.
T Consensus 111 ~~v~Vpv~ 118 (174)
T 1yyc_A 111 TVLDVPVK 118 (174)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99998876
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.07 E-value=2.4e-06 Score=63.44 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=74.2
Q ss_pred CCcEEEeeeeEEeeEEeecCCCCceeeEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeecccCC-CeeecCCCc
Q 042256 39 KLPVFHLQSFSFRHFNVSVKSDGTYLHAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGSVP-GFTQGTKNA 117 (196)
Q Consensus 39 ~~P~f~v~~~~v~~f~~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~~p-~f~q~~~~~ 117 (196)
+.|++++.++++.+++. ...++.+.++++||| ..++.+..++.++.-. |..++++..+ ++..+++++
T Consensus 20 ~~P~v~v~~v~~~~~~~--------~~~~~~~~l~V~NPN-~~~lpi~gi~y~l~vn---g~~lasG~~~~~~~ipa~g~ 87 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR--------DSVEYLAKVSVTNPY-SHSIPICEISFTFHSA---GREIGKGKIPDPGSLKAKDM 87 (151)
T ss_dssp CSCCCBCSEEEECCCTT--------TEECEEEEEEEECSS-SSCCCCEEEEEEEESS---SSCEEEEEEEECCCCSSSSE
T ss_pred CCCEEEEEEeEEeccCc--------ceeEEEEEEEEECCC-CCCcccccEEEEEEEC---CEEEEEEecCCCcEECCCCc
Confidence 67888998888876543 356799999999999 6799999999999888 9999999876 588899999
Q ss_pred eEEEEEEe-eccccCCcchhHhhccc-cCCcEEEEEEEEEE
Q 042256 118 RSLKIETK-TDELVEDGMGPRLMSHH-KSKDLVVNVVVKTT 156 (196)
Q Consensus 118 ~~v~~~~~-~~~~l~~~~~~~l~~d~-~~g~v~l~v~v~~~ 156 (196)
+.+.+.+. .... ..++..++ ..+.++.+++++..
T Consensus 88 ~~v~vpv~v~~~~-----l~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 88 TALDIPVVVPYSI-----LFNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp EEEEECCCEEHHH-----HHHHHHHHHHHSEEEEEEEEEEE
T ss_pred EEEEEEEEEEHHH-----HHHHHHhcccCCcccEEEEEEEE
Confidence 99888876 3211 22222332 23456666655444
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.98 E-value=8.9e-05 Score=53.94 Aligned_cols=88 Identities=10% Similarity=0.186 Sum_probs=65.7
Q ss_pred eEEEEEEEEEeCCCCeeEEEEeCcEEEEEEecCCCeeeeccc-CCCeeecCCCceEEEEEEe-eccccCCcchhHhhccc
Q 042256 65 HAATLTRVEARNPNGKLRYYYRHTDVEVTAGKDKEIDLGTGS-VPGFTQGTKNARSLKIETK-TDELVEDGMGPRLMSHH 142 (196)
Q Consensus 65 ~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~y~~~~~~~lg~~~-~p~f~q~~~~~~~v~~~~~-~~~~l~~~~~~~l~~d~ 142 (196)
...+.+.+.+.||| .+++.++.++.+++.. |.++|++. -..+..++.+.+.+.+.+. +.-.+.+. +.+.+
T Consensus 17 ~t~~~~~l~V~NPN-~~~l~i~gl~y~v~ln---g~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~----~~~hi 88 (136)
T 3but_A 17 QTEIVALAKVRNED-VVPIVVSGYHYTIEMN---GVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREW----WVTHI 88 (136)
T ss_dssp EEEEEEEEEEECCS-SSCEEEEEEEEEEEET---TEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTH----HHHHH
T ss_pred EEEEEEEEEEeCCC-CcceeeeceEEEEEEC---CEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHH----HHHHh
Confidence 56789999999999 7899999999999999 99999997 6789999999889999988 65555543 33333
Q ss_pred cCC-cEEEEEEEEEEEEEEEe
Q 042256 143 KSK-DLVVNVVVKTTVAVIVQ 162 (196)
Q Consensus 143 ~~g-~v~l~v~v~~~~r~kvg 162 (196)
.+| .-.+++++ ++++.++
T Consensus 89 ~nge~s~l~i~~--~~~l~v~ 107 (136)
T 3but_A 89 ANGEKTKIRVAI--KPTIEIG 107 (136)
T ss_dssp HTTSEEEEEEEE--EEEEECC
T ss_pred hcCCceEEEEEE--EEEEEeC
Confidence 445 33343333 3344444
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=70.93 E-value=1.6 Score=21.66 Aligned_cols=17 Identities=47% Similarity=0.964 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhheeeEe
Q 042256 20 LLIILIVIAGALFYLWF 36 (196)
Q Consensus 20 ~li~l~~~~~~i~~lv~ 36 (196)
+|++++.+++.++|+++
T Consensus 9 lLIviav~aaVllylW~ 25 (26)
T 3j1r_A 9 LLILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44445555556666543
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.90 E-value=18 Score=23.10 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhheee
Q 042256 14 FCFFIVLLIILIVIAGALFYL 34 (196)
Q Consensus 14 ~~~~~~~li~l~~~~~~i~~l 34 (196)
+...++..++++|++++++|-
T Consensus 13 Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333445566677777766664
No 6
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=41.24 E-value=5.6 Score=31.82 Aligned_cols=6 Identities=0% Similarity=0.019 Sum_probs=2.9
Q ss_pred cCCcEE
Q 042256 143 KSKDLV 148 (196)
Q Consensus 143 ~~g~v~ 148 (196)
+.|.|.
T Consensus 192 A~G~V~ 197 (278)
T 3p5s_A 192 ACNTVR 197 (278)
T ss_dssp CCSEEE
T ss_pred CCCeEE
Confidence 455443
No 7
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=40.49 E-value=7.5 Score=31.28 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=23.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhheeeE---eecCCcEEEeeee
Q 042256 9 VCCCCFCFFIVLLIILIVIAGALFYLW---FDPKLPVFHLQSF 48 (196)
Q Consensus 9 ~~c~c~~~~~~~li~l~~~~~~i~~lv---~rP~~P~f~v~~~ 48 (196)
+|.-.++.-+++=++|+|+.++.+|.+ +.|+.|+++ +..
T Consensus 14 sW~~IllFYliFY~~La~lFa~~m~v~l~TLd~~~Pkyq-d~~ 55 (286)
T 3kdp_B 14 SWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ-DRV 55 (286)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGSCSCSSSCSCC-TTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCccc-CCC
Confidence 444444444444555666555555555 689999988 444
No 8
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=32.69 E-value=37 Score=18.95 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhee
Q 042256 18 IVLLIILIVIAGALFY 33 (196)
Q Consensus 18 ~~~li~l~~~~~~i~~ 33 (196)
++..++++|++.+++|
T Consensus 16 vi~~ivliGl~lLliw 31 (43)
T 2k9j_B 16 VMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666777766665
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=32.60 E-value=15 Score=20.15 Aligned_cols=21 Identities=5% Similarity=0.409 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhheeeEe
Q 042256 16 FFIVLLIILIVIAGALFYLWF 36 (196)
Q Consensus 16 ~~~~~li~l~~~~~~i~~lv~ 36 (196)
.+++++.+++|+++.++.+.|
T Consensus 12 i~lII~~vmaGiIG~IllI~y 32 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISY 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777766665443
No 10
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=36.48 E-value=11 Score=20.76 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=8.3
Q ss_pred HhheeeEeecCCcEE
Q 042256 29 GALFYLWFDPKLPVF 43 (196)
Q Consensus 29 ~~i~~lv~rP~~P~f 43 (196)
.+++.++..-++|++
T Consensus 24 sLIiLi~~w~qKPrY 38 (39)
T 2l6w_A 24 SLIILIMLWQKKPRY 38 (39)
Confidence 344444555667765
No 11
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=29.13 E-value=29 Score=27.85 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhheee---EeecCCcEEEee
Q 042256 18 IVLLIILIVIAGALFYL---WFDPKLPVFHLQ 46 (196)
Q Consensus 18 ~~~li~l~~~~~~i~~l---v~rP~~P~f~v~ 46 (196)
+++-++|+|+.++.+|. .+.|+.|++.-+
T Consensus 45 liFY~~LaglFa~~m~v~l~Tld~~~Pkyqd~ 76 (290)
T 3ixz_B 45 VAFYVVMSGIFALCIYVLMRTIDPYTPDYQDQ 76 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCcccc
Confidence 33444555555444444 467889988643
No 12
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=27.56 E-value=17 Score=29.47 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=20.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhe---eeEeecCCcEEEe
Q 042256 9 VCCCCFCFFIVLLIILIVIAGALF---YLWFDPKLPVFHL 45 (196)
Q Consensus 9 ~~c~c~~~~~~~li~l~~~~~~i~---~lv~rP~~P~f~v 45 (196)
+|.-.++.-+++-++|+|+.++.+ +..+.|+.|+++-
T Consensus 32 sW~~IllFYliFY~~La~lF~~~m~v~l~tl~~~~Pk~q~ 71 (305)
T 2zxe_B 32 SWFKIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKYQD 71 (305)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSCSCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcccc
Confidence 333333333344555556555553 4446788998874
No 13
>2yev_C CAA3-type cytochrome oxidase subunit IV; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=32.76 E-value=14 Score=22.48 Aligned_cols=27 Identities=22% Similarity=0.545 Sum_probs=17.8
Q ss_pred HHHHHhheeeEeecCCcEEEeeeeEEe
Q 042256 25 IVIAGALFYLWFDPKLPVFHLQSFSFR 51 (196)
Q Consensus 25 ~~~~~~i~~lv~rP~~P~f~v~~~~v~ 51 (196)
+.+...++|++++|+.-...=+++.+.
T Consensus 11 a~lVt~~~Yl~lnPR~late~e~~DLr 37 (66)
T 2yev_C 11 AALVTLFFYLILNPRVLTTEGETFDLR 37 (66)
Confidence 335678899999998765544444433
No 14
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=26.32 E-value=10 Score=18.22 Aligned_cols=11 Identities=45% Similarity=0.598 Sum_probs=7.9
Q ss_pred EEEeCCCCeeE
Q 042256 72 VEARNPNGKLR 82 (196)
Q Consensus 72 l~v~NPN~~~~ 82 (196)
+..+|||.+..
T Consensus 6 fllrnpndkye 16 (26)
T 1nrp_R 6 FLLRNPNDKYE 16 (26)
T ss_pred hhhcCCCcccC
Confidence 45689998754
No 15
>2jxp_A Putative lipoprotein B; uncharacterized lipoprotein B, structure, northeast structural genomics consortium, NESG, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=25.44 E-value=1.8e+02 Score=20.42 Aligned_cols=42 Identities=5% Similarity=-0.002 Sum_probs=23.3
Q ss_pred CCcEEEeeeeEEeeEEeecCCCC--ceeeEEEEEEEEEeCCCCe
Q 042256 39 KLPVFHLQSFSFRHFNVSVKSDG--TYLHAATLTRVEARNPNGK 80 (196)
Q Consensus 39 ~~P~f~v~~~~v~~f~~~~~~~~--~~l~~~~~~~l~v~NPN~~ 80 (196)
.+|.+.+.+.+.+.-.++-.+++ .-....+.+++++.||++.
T Consensus 50 a~~~L~i~~~~~~~~~lSv~~~g~~~Ey~L~~~v~~~l~~~~~~ 93 (155)
T 2jxp_A 50 SEAIIQIVHAIREKRILSLSESGRVREFELVYRVAARLLDAHNA 93 (155)
T ss_dssp CSEEEEEEEEEEEEEECCEETTTEECEEEEEEEEEEEEEETTSC
T ss_pred CCeEEEEeeeeeeEEEEEEcCCCEEEEEEEEEEEEEEEEeCCCC
Confidence 45667766666655554433233 2334455566677788753
No 16
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=25.31 E-value=16 Score=17.68 Aligned_cols=11 Identities=45% Similarity=0.598 Sum_probs=7.8
Q ss_pred EEEeCCCCeeE
Q 042256 72 VEARNPNGKLR 82 (196)
Q Consensus 72 l~v~NPN~~~~ 82 (196)
+..+|||.+..
T Consensus 6 fllrnpndkye 16 (27)
T 1nro_R 6 FLLRNPNDKYE 16 (27)
T ss_pred ccccCCCcccC
Confidence 35689998654
No 17
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=23.55 E-value=33 Score=18.23 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=7.0
Q ss_pred HHHHHHHHHhheee
Q 042256 21 LIILIVIAGALFYL 34 (196)
Q Consensus 21 li~l~~~~~~i~~l 34 (196)
+++++|+.++++|+
T Consensus 11 ~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 11 VILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555554
No 18
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=22.10 E-value=25 Score=18.41 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=4.5
Q ss_pred hheeeEeecCCc
Q 042256 30 ALFYLWFDPKLP 41 (196)
Q Consensus 30 ~i~~lv~rP~~P 41 (196)
.+|+-++-..+|
T Consensus 16 iiFFAI~FRePP 27 (32)
T 3arc_T 16 LFFFAIFFREPP 27 (32)
T ss_dssp HHHHHHHTSCCC
T ss_pred HHHHhhhhcCCC
Confidence 334333333334
No 19
>2v3s_A Serine/threonine-protein kinase OSR1; ATP-binding, magnesium, metal-binding, nucleotide-binding, phosphorylation, polymorphism, transferase; 1.70A {Homo sapiens}
Probab=21.70 E-value=1.1e+02 Score=20.17 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=14.3
Q ss_pred EEEEEEEeCCCCee-EEEEe
Q 042256 68 TLTRVEARNPNGKL-RYYYR 86 (196)
Q Consensus 68 ~~~~l~v~NPN~~~-~i~Y~ 86 (196)
+++.++.+|+++.+ .|+|+
T Consensus 3 v~LvLRlRn~~rELnDIrFe 22 (96)
T 2v3s_A 3 ISLVLRLRNSKKELNDIRFE 22 (96)
T ss_dssp EEEEEEEECTTSCEEEEEEE
T ss_pred eeEEEEeccccchhcceEEE
Confidence 57889999999866 35554
No 20
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=21.61 E-value=14 Score=19.91 Aligned_cols=6 Identities=17% Similarity=0.855 Sum_probs=3.5
Q ss_pred eeEeec
Q 042256 33 YLWFDP 38 (196)
Q Consensus 33 ~lv~rP 38 (196)
++++||
T Consensus 18 Fl~iRP 23 (37)
T 2rdd_B 18 FMILRP 23 (37)
T ss_dssp HHTHHH
T ss_pred HHHhhh
Confidence 445677
No 21
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=21.59 E-value=19 Score=22.56 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=3.5
Q ss_pred EEEEEEEEeCCCC
Q 042256 67 ATLTRVEARNPNG 79 (196)
Q Consensus 67 ~~~~~l~v~NPN~ 79 (196)
-+++.++++|||+
T Consensus 9 gv~lki~ir~pnk 21 (89)
T 2kj1_A 9 GVNMKIRIKGPNK 21 (89)
T ss_dssp ---------CCCH
T ss_pred cCceEEEecCCCH
Confidence 3578889999995
No 22
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=21.53 E-value=20 Score=28.68 Aligned_cols=7 Identities=0% Similarity=-0.415 Sum_probs=0.0
Q ss_pred eeEeecC
Q 042256 33 YLWFDPK 39 (196)
Q Consensus 33 ~lv~rP~ 39 (196)
-+.+.|+
T Consensus 30 ~~~~~~~ 36 (278)
T 3p5s_A 30 GIYKWHY 36 (278)
T ss_dssp -------
T ss_pred eEEeccC
Confidence 3344444
No 23
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=20.08 E-value=33 Score=20.78 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhheeeE
Q 042256 11 CCCFCFFIVLLIILIVIAGALFYLW 35 (196)
Q Consensus 11 c~c~~~~~~~li~l~~~~~~i~~lv 35 (196)
.||+.-++.+++=..|++..+-|+-
T Consensus 9 LCC~tPvLvil~G~~Glsa~~~wLd 33 (61)
T 2h3o_A 9 LSSFTPVLVILLGVVGLSALTGYLD 33 (61)
T ss_dssp -------CHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4677766655555556666655543
Done!