Query 042257
Match_columns 383
No_of_seqs 183 out of 1737
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 3.5E-37 7.5E-42 288.2 34.6 327 11-339 9-337 (358)
2 PRK11272 putative DMT superfam 100.0 5.5E-31 1.2E-35 242.6 30.5 277 17-333 10-288 (292)
3 PRK11453 O-acetylserine/cystei 100.0 8.5E-31 1.8E-35 242.2 29.8 280 16-333 5-290 (299)
4 PRK15430 putative chlorampheni 100.0 9.1E-31 2E-35 241.5 27.1 282 9-332 2-287 (296)
5 PRK10532 threonine and homoser 100.0 6.2E-30 1.3E-34 235.6 29.4 281 10-337 7-288 (293)
6 PRK11689 aromatic amino acid e 100.0 2.9E-30 6.3E-35 238.0 26.5 285 13-333 2-290 (295)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 1.3E-29 2.9E-34 230.0 26.3 257 27-325 1-259 (260)
8 TIGR00817 tpt Tpt phosphate/ph 100.0 6.8E-29 1.5E-33 230.0 28.0 284 18-335 5-298 (302)
9 TIGR03340 phn_DUF6 phosphonate 100.0 7.8E-27 1.7E-31 213.9 27.1 273 17-327 3-280 (281)
10 PTZ00343 triose or hexose phos 100.0 1.8E-26 3.9E-31 217.0 29.1 285 13-331 47-349 (350)
11 PF06027 DUF914: Eukaryotic pr 100.0 4E-26 8.6E-31 209.2 28.7 302 11-337 9-312 (334)
12 TIGR00688 rarD rarD protein. T 99.9 3.7E-25 8.1E-30 200.2 26.3 248 15-305 2-255 (256)
13 COG0697 RhaT Permeases of the 99.9 1.4E-22 3.1E-27 186.6 30.1 282 11-331 3-288 (292)
14 COG2962 RarD Predicted permeas 99.9 1.1E-22 2.4E-27 177.4 27.0 282 11-334 3-287 (293)
15 COG5006 rhtA Threonine/homoser 99.9 7.4E-23 1.6E-27 173.7 24.1 273 16-334 13-286 (292)
16 KOG4510 Permease of the drug/m 99.9 7E-26 1.5E-30 193.1 0.4 292 13-333 36-328 (346)
17 TIGR00776 RhaT RhaT L-rhamnose 99.9 1.1E-20 2.3E-25 173.4 24.4 279 16-331 2-289 (290)
18 PF08449 UAA: UAA transporter 99.9 7E-20 1.5E-24 169.5 26.6 268 43-335 31-302 (303)
19 KOG2765 Predicted membrane pro 99.8 4.8E-19 1E-23 158.8 16.3 301 10-334 9-394 (416)
20 KOG1441 Glucose-6-phosphate/ph 99.8 3.8E-19 8.2E-24 161.2 10.9 286 19-337 21-314 (316)
21 KOG2234 Predicted UDP-galactos 99.7 8.5E-14 1.8E-18 125.6 29.3 298 15-335 15-327 (345)
22 KOG1444 Nucleotide-sugar trans 99.7 2.3E-14 4.9E-19 127.4 25.3 295 10-337 7-307 (314)
23 COG2510 Predicted membrane pro 99.7 3.4E-16 7.3E-21 119.4 9.6 135 15-157 3-138 (140)
24 KOG2766 Predicted membrane pro 99.6 1.3E-16 2.9E-21 135.8 4.1 284 11-329 14-298 (336)
25 KOG1580 UDP-galactose transpor 99.6 4.6E-14 9.9E-19 119.0 18.3 263 44-334 53-317 (337)
26 KOG1581 UDP-galactose transpor 99.6 4.9E-14 1.1E-18 123.6 19.0 265 43-334 50-317 (327)
27 PF04142 Nuc_sug_transp: Nucle 99.6 4.3E-14 9.2E-19 125.7 18.6 228 75-321 13-244 (244)
28 COG2510 Predicted membrane pro 99.6 1.4E-14 3E-19 110.6 12.7 135 192-329 4-138 (140)
29 KOG1443 Predicted integral mem 99.6 2.4E-13 5.3E-18 119.2 21.0 257 40-328 40-313 (349)
30 PF00892 EamA: EamA-like trans 99.5 6.8E-14 1.5E-18 111.9 9.9 125 25-157 1-125 (126)
31 KOG1442 GDP-fucose transporter 99.5 1.5E-14 3.3E-19 124.6 6.3 279 32-339 45-336 (347)
32 COG5070 VRG4 Nucleotide-sugar 99.5 7.7E-13 1.7E-17 110.8 12.9 282 30-340 21-306 (309)
33 KOG3912 Predicted integral mem 99.4 5.8E-12 1.3E-16 109.2 16.8 280 27-329 15-333 (372)
34 PF00892 EamA: EamA-like trans 99.4 1.7E-12 3.6E-17 103.8 8.9 124 201-329 1-125 (126)
35 PF06800 Sugar_transport: Suga 99.4 3.4E-10 7.3E-15 100.4 22.7 252 42-327 10-268 (269)
36 KOG1583 UDP-N-acetylglucosamin 99.4 2.2E-11 4.8E-16 105.5 14.3 276 42-334 31-318 (330)
37 TIGR00950 2A78 Carboxylate/Ami 99.3 7.8E-11 1.7E-15 106.8 15.7 134 11-153 124-259 (260)
38 PF05653 Mg_trans_NIPA: Magnes 99.2 6E-10 1.3E-14 102.1 18.4 280 11-332 3-294 (300)
39 PRK13499 rhamnose-proton sympo 99.2 1.5E-08 3.2E-13 93.7 27.3 299 12-332 4-343 (345)
40 PF03151 TPT: Triose-phosphate 99.2 1.2E-10 2.5E-15 96.8 12.4 139 192-330 1-153 (153)
41 PF13536 EmrE: Multidrug resis 99.2 4.5E-11 9.8E-16 93.8 8.3 105 49-160 2-108 (113)
42 KOG4314 Predicted carbohydrate 99.2 4.1E-11 9E-16 98.7 8.1 211 91-333 64-279 (290)
43 PRK11272 putative DMT superfam 99.2 8.8E-10 1.9E-14 101.6 16.8 139 12-158 147-285 (292)
44 KOG1582 UDP-galactose transpor 99.2 8.1E-10 1.8E-14 95.5 14.9 271 29-332 57-334 (367)
45 PRK10532 threonine and homoser 99.2 1.4E-09 3E-14 100.4 16.3 138 13-160 146-283 (293)
46 PLN00411 nodulin MtN21 family 99.1 4.2E-09 9.1E-14 99.2 16.9 138 14-160 188-330 (358)
47 TIGR03340 phn_DUF6 phosphonate 99.1 2.4E-09 5.3E-14 98.2 14.6 134 193-331 3-136 (281)
48 PRK15430 putative chlorampheni 99.1 2.4E-09 5.2E-14 98.9 13.5 138 188-330 5-145 (296)
49 PRK11689 aromatic amino acid e 99.1 5.6E-09 1.2E-13 96.4 15.6 134 13-158 154-287 (295)
50 TIGR00688 rarD rarD protein. T 99.0 7E-09 1.5E-13 93.8 13.1 137 191-330 2-142 (256)
51 PRK11453 O-acetylserine/cystei 98.9 4.1E-08 8.9E-13 90.9 16.8 138 14-158 142-287 (299)
52 COG4975 GlcU Putative glucose 98.9 3.3E-10 7.2E-15 96.7 1.1 276 15-330 2-285 (288)
53 TIGR00803 nst UDP-galactose tr 98.9 5.6E-09 1.2E-13 92.3 8.7 213 105-328 3-222 (222)
54 PRK02971 4-amino-4-deoxy-L-ara 98.8 6.4E-08 1.4E-12 77.1 12.3 121 191-333 2-125 (129)
55 TIGR00817 tpt Tpt phosphate/ph 98.8 4.9E-08 1.1E-12 90.5 13.3 141 13-160 143-295 (302)
56 KOG2922 Uncharacterized conser 98.8 7.2E-09 1.6E-13 92.4 5.0 273 9-329 15-305 (335)
57 PF13536 EmrE: Multidrug resis 98.8 4.5E-08 9.8E-13 76.7 8.6 107 226-334 3-110 (113)
58 PF03151 TPT: Triose-phosphate 98.7 3.7E-07 8E-12 75.6 14.3 133 16-155 1-150 (153)
59 TIGR00776 RhaT RhaT L-rhamnose 98.7 5.5E-07 1.2E-11 82.8 15.0 128 14-157 151-287 (290)
60 PTZ00343 triose or hexose phos 98.7 9.8E-07 2.1E-11 83.4 16.0 139 13-157 192-347 (350)
61 PRK15051 4-amino-4-deoxy-L-ara 98.6 8.4E-07 1.8E-11 68.9 12.4 68 84-157 41-108 (111)
62 COG0697 RhaT Permeases of the 98.6 1.9E-06 4.1E-11 79.0 16.1 135 13-158 152-287 (292)
63 COG2962 RarD Predicted permeas 98.5 1.3E-06 2.9E-11 77.2 12.2 140 189-331 5-145 (293)
64 COG5006 rhtA Threonine/homoser 98.5 3.6E-06 7.8E-11 72.7 12.8 140 10-158 143-282 (292)
65 PRK15051 4-amino-4-deoxy-L-ara 98.5 1.3E-06 2.7E-11 68.0 8.9 65 265-329 43-108 (111)
66 PRK02971 4-amino-4-deoxy-L-ara 98.3 1.1E-05 2.5E-10 64.2 12.2 118 15-157 2-121 (129)
67 PF06379 RhaT: L-rhamnose-prot 98.2 0.00089 1.9E-08 61.2 22.6 301 13-331 5-341 (344)
68 PF06027 DUF914: Eukaryotic pr 98.2 4.8E-05 1E-09 70.6 14.1 144 189-334 11-155 (334)
69 PF06800 Sugar_transport: Suga 98.1 6.2E-05 1.4E-09 67.2 11.9 118 11-136 134-251 (269)
70 KOG4510 Permease of the drug/m 98.0 2.2E-06 4.8E-11 74.5 1.6 137 188-332 35-171 (346)
71 PF08449 UAA: UAA transporter 98.0 0.00015 3.2E-09 67.3 13.0 131 203-339 12-145 (303)
72 PRK10452 multidrug efflux syst 97.9 7.5E-05 1.6E-09 58.4 8.0 65 268-332 40-105 (120)
73 PF04657 DUF606: Protein of un 97.8 0.00034 7.4E-09 56.6 11.5 132 192-327 2-138 (138)
74 PF05653 Mg_trans_NIPA: Magnes 97.8 0.00011 2.3E-09 67.7 8.4 119 187-331 3-123 (300)
75 PRK13499 rhamnose-proton sympo 97.7 0.00032 7E-09 65.2 10.6 144 188-337 4-160 (345)
76 PRK09541 emrE multidrug efflux 97.7 0.00021 4.5E-09 55.2 7.7 65 268-332 40-105 (110)
77 PF04142 Nuc_sug_transp: Nucle 97.6 0.00019 4E-09 64.1 7.6 80 256-335 15-94 (244)
78 PRK10452 multidrug efflux syst 97.6 0.00025 5.4E-09 55.5 7.2 68 85-158 35-103 (120)
79 COG3238 Uncharacterized protei 97.6 0.0013 2.9E-08 53.1 11.5 139 190-331 4-147 (150)
80 COG2076 EmrE Membrane transpor 97.6 0.00042 9.1E-09 52.4 7.4 67 86-158 36-103 (106)
81 PRK10650 multidrug efflux syst 97.6 0.0014 3.1E-08 50.3 10.5 64 87-156 42-106 (109)
82 PRK11431 multidrug efflux syst 97.5 0.00042 9E-09 53.0 7.2 63 268-330 39-102 (105)
83 PRK09541 emrE multidrug efflux 97.5 0.00054 1.2E-08 52.9 7.8 67 86-158 36-103 (110)
84 PF04657 DUF606: Protein of un 97.5 0.002 4.4E-08 52.0 11.2 130 17-155 3-138 (138)
85 COG2076 EmrE Membrane transpor 97.5 0.00038 8.1E-09 52.6 6.4 65 268-332 40-105 (106)
86 PRK10650 multidrug efflux syst 97.5 0.0016 3.6E-08 50.0 10.0 63 267-329 44-107 (109)
87 KOG2765 Predicted membrane pro 97.4 0.00086 1.9E-08 61.6 9.2 146 9-160 241-392 (416)
88 PF10639 UPF0546: Uncharacteri 97.4 0.00037 8E-09 53.6 5.7 109 21-155 2-111 (113)
89 PRK11431 multidrug efflux syst 97.4 0.00095 2.1E-08 51.0 7.7 65 87-157 36-101 (105)
90 KOG1441 Glucose-6-phosphate/ph 97.4 0.00058 1.3E-08 62.7 7.3 139 12-158 160-307 (316)
91 PF07857 DUF1632: CEO family ( 97.2 0.0039 8.4E-08 55.5 10.9 190 16-216 1-208 (254)
92 PF07857 DUF1632: CEO family ( 97.0 0.0014 3E-08 58.3 5.4 134 192-337 1-141 (254)
93 PF00893 Multi_Drug_Res: Small 96.9 0.0052 1.1E-07 46.0 7.6 55 267-321 38-93 (93)
94 COG4975 GlcU Putative glucose 96.9 0.00046 9.9E-09 59.8 1.7 133 192-334 3-140 (288)
95 PF00893 Multi_Drug_Res: Small 96.8 0.0037 8E-08 46.8 6.2 57 86-148 35-92 (93)
96 KOG2234 Predicted UDP-galactos 96.8 0.094 2E-06 48.4 15.6 142 192-333 16-167 (345)
97 KOG1581 UDP-galactose transpor 96.5 0.041 8.8E-07 49.5 10.9 140 11-158 168-313 (327)
98 PF10639 UPF0546: Uncharacteri 96.4 0.008 1.7E-07 46.3 5.5 107 198-327 3-111 (113)
99 TIGR00803 nst UDP-galactose tr 96.3 0.017 3.7E-07 50.8 7.6 135 12-154 82-220 (222)
100 COG3238 Uncharacterized protei 95.7 0.33 7.1E-06 39.5 11.9 137 13-156 3-144 (150)
101 PF06379 RhaT: L-rhamnose-prot 95.5 0.088 1.9E-06 48.5 8.7 147 188-337 4-160 (344)
102 KOG1444 Nucleotide-sugar trans 95.4 0.16 3.5E-06 46.1 10.1 139 13-158 155-300 (314)
103 COG5070 VRG4 Nucleotide-sugar 95.0 0.2 4.2E-06 43.2 8.9 138 15-159 155-297 (309)
104 KOG2922 Uncharacterized conser 94.8 0.013 2.9E-07 53.0 1.4 121 185-330 15-136 (335)
105 KOG4314 Predicted carbohydrate 94.1 0.018 3.9E-07 48.3 0.6 66 270-335 65-130 (290)
106 KOG1580 UDP-galactose transpor 93.8 0.4 8.6E-06 41.7 8.2 133 12-158 169-313 (337)
107 KOG1443 Predicted integral mem 92.8 0.69 1.5E-05 41.9 8.4 124 210-333 35-159 (349)
108 KOG4831 Unnamed protein [Funct 91.4 2.7 5.9E-05 31.6 8.7 112 17-156 5-123 (125)
109 PF07168 Ureide_permease: Urei 91.1 0.18 3.9E-06 45.5 2.8 132 197-330 2-146 (336)
110 KOG1442 GDP-fucose transporter 89.7 0.85 1.9E-05 40.7 5.7 142 12-160 182-329 (347)
111 KOG1582 UDP-galactose transpor 89.3 3.7 8E-05 36.7 9.2 140 14-160 189-334 (367)
112 PRK02237 hypothetical protein; 88.9 2 4.4E-05 32.5 6.4 48 286-333 61-108 (109)
113 PF02694 UPF0060: Uncharacteri 87.1 1.2 2.7E-05 33.6 4.3 47 287-333 60-106 (107)
114 KOG3912 Predicted integral mem 86.6 0.86 1.9E-05 40.8 3.8 67 265-331 93-159 (372)
115 KOG2766 Predicted membrane pro 84.0 0.14 3E-06 45.0 -2.2 136 189-332 16-152 (336)
116 KOG4831 Unnamed protein [Funct 83.5 3.5 7.7E-05 31.0 5.2 61 268-328 62-123 (125)
117 PRK02237 hypothetical protein; 82.8 18 0.0004 27.5 8.8 47 106-158 58-105 (109)
118 PF02694 UPF0060: Uncharacteri 77.5 15 0.00033 27.8 6.9 52 101-158 51-103 (107)
119 PF05297 Herpes_LMP1: Herpesvi 76.8 0.79 1.7E-05 40.9 0.0 29 104-132 47-76 (381)
120 PF04342 DUF486: Protein of un 75.7 31 0.00068 26.1 8.1 45 105-155 60-105 (108)
121 PF06570 DUF1129: Protein of u 74.5 56 0.0012 28.2 11.4 9 126-134 195-203 (206)
122 COG1742 Uncharacterized conser 74.2 8.6 0.00019 28.9 4.8 48 286-333 60-107 (109)
123 PRK06638 NADH:ubiquinone oxido 73.7 58 0.0013 28.0 13.5 27 299-325 133-159 (198)
124 PF07168 Ureide_permease: Urei 70.6 1.7 3.6E-05 39.5 0.5 129 20-155 1-143 (336)
125 COG4657 RnfA Predicted NADH:ub 61.7 67 0.0015 26.4 7.9 53 187-239 128-185 (193)
126 COG3169 Uncharacterized protei 60.3 20 0.00043 26.7 4.3 33 297-329 82-114 (116)
127 PF04342 DUF486: Protein of un 60.2 8.8 0.00019 29.0 2.5 30 299-328 77-106 (108)
128 KOG1583 UDP-N-acetylglucosamin 59.2 1.4E+02 0.0031 27.2 10.1 134 14-158 163-314 (330)
129 COG1742 Uncharacterized conser 54.6 63 0.0014 24.5 6.1 40 113-158 65-104 (109)
130 PF05977 MFS_3: Transmembrane 53.7 2.5E+02 0.0054 28.3 23.5 15 290-304 352-366 (524)
131 PF15102 TMEM154: TMEM154 prot 53.0 14 0.00031 29.8 2.8 24 315-338 66-89 (146)
132 KOG3762 Predicted transporter 52.1 1.2E+02 0.0026 30.6 9.4 22 197-218 410-434 (618)
133 TIGR01647 ATPase-IIIA_H plasma 48.3 1.8E+02 0.0039 30.8 10.9 114 42-156 625-752 (755)
134 COG3086 RseC Positive regulato 47.4 7.6 0.00016 31.2 0.5 28 280-307 70-97 (150)
135 PF05297 Herpes_LMP1: Herpesvi 45.7 6.8 0.00015 35.1 -0.0 25 268-292 118-142 (381)
136 PF10225 DUF2215: Uncharacteri 43.7 2.4E+02 0.0052 25.2 10.3 42 280-321 117-158 (249)
137 COG3965 Predicted Co/Zn/Cd cat 40.9 2.7E+02 0.006 25.1 11.4 116 14-133 95-214 (314)
138 PF08507 COPI_assoc: COPI asso 39.7 52 0.0011 26.3 4.3 16 314-329 89-104 (136)
139 PF11361 DUF3159: Protein of u 38.9 1.5E+02 0.0032 25.3 7.0 71 109-209 29-99 (187)
140 PRK10666 ammonium transporter; 38.1 3.9E+02 0.0086 26.1 18.2 98 189-288 303-408 (428)
141 PF05961 Chordopox_A13L: Chord 37.9 47 0.001 22.8 3.0 23 314-336 6-28 (68)
142 COG4858 Uncharacterized membra 37.5 2.6E+02 0.0056 23.8 11.7 74 122-213 143-216 (226)
143 COG3169 Uncharacterized protei 35.6 1.9E+02 0.0041 21.7 10.0 32 120-157 83-114 (116)
144 COG3476 Tryptophan-rich sensor 34.8 2.5E+02 0.0054 23.2 7.4 62 268-329 61-123 (161)
145 KOG3817 Uncharacterized conser 34.2 3.1E+02 0.0067 25.9 8.6 83 26-113 200-284 (452)
146 COG2271 UhpC Sugar phosphate p 33.4 4.1E+02 0.0088 26.0 9.6 45 291-336 166-211 (448)
147 PF11381 DUF3185: Protein of u 33.1 53 0.0012 22.1 2.7 18 142-159 1-18 (59)
148 TIGR02865 spore_II_E stage II 32.4 6.4E+02 0.014 26.8 17.0 45 106-156 10-54 (764)
149 PF09656 PGPGW: Putative trans 31.4 1.6E+02 0.0034 19.4 4.8 44 143-216 6-49 (53)
150 PF10754 DUF2569: Protein of u 30.5 2.9E+02 0.0064 22.3 8.5 29 185-213 115-143 (149)
151 PF06946 Phage_holin_5: Phage 29.6 2.4E+02 0.0051 21.0 6.4 60 276-335 22-85 (93)
152 PRK15462 dipeptide/tripeptide 29.4 5.8E+02 0.013 25.4 12.4 18 109-126 310-327 (493)
153 PF05915 DUF872: Eukaryotic pr 28.7 1.6E+02 0.0034 22.9 5.1 15 143-157 52-66 (115)
154 PF03595 SLAC1: Voltage-depend 28.5 4.7E+02 0.01 24.1 12.5 42 143-205 7-48 (330)
155 PF15108 TMEM37: Voltage-depen 26.6 3.7E+02 0.0079 22.1 7.1 79 143-239 92-172 (184)
156 PHA03049 IMV membrane protein; 26.5 1.1E+02 0.0023 21.1 3.2 24 314-337 6-29 (68)
157 PF03605 DcuA_DcuB: Anaerobic 26.5 5.7E+02 0.012 24.3 9.6 15 120-134 3-17 (364)
158 TIGR00892 2A0113 monocarboxyla 26.4 6.1E+02 0.013 24.6 10.5 6 41-46 50-55 (455)
159 PF07123 PsbW: Photosystem II 25.4 78 0.0017 25.2 2.9 34 184-217 99-132 (138)
160 PF04246 RseC_MucC: Positive r 24.2 31 0.00067 27.5 0.5 22 284-305 67-88 (135)
161 MTH00057 ND6 NADH dehydrogenas 23.9 4.5E+02 0.0097 22.3 11.5 35 299-333 132-166 (186)
162 COG0474 MgtA Cation transport 23.7 8.3E+02 0.018 26.6 11.2 50 15-64 703-754 (917)
163 COG0004 AmtB Ammonia permease 23.6 6.8E+02 0.015 24.3 11.0 22 82-103 199-220 (409)
164 PF11028 DUF2723: Protein of u 23.4 4.5E+02 0.0098 22.1 9.8 51 13-68 78-128 (178)
165 PF06365 CD34_antigen: CD34/Po 23.2 1.4E+02 0.0031 25.7 4.3 16 318-333 112-127 (202)
166 PF15471 TMEM171: Transmembran 23.1 85 0.0018 28.1 3.0 20 312-331 161-180 (319)
167 PF08693 SKG6: Transmembrane a 22.4 70 0.0015 19.6 1.7 18 316-333 21-38 (40)
168 COG4858 Uncharacterized membra 22.3 4.9E+02 0.011 22.2 10.1 91 16-110 101-191 (226)
169 PF07444 Ycf66_N: Ycf66 protei 22.3 65 0.0014 23.4 1.8 28 309-336 4-31 (84)
170 PF00909 Ammonium_transp: Ammo 22.3 7.1E+02 0.015 24.0 19.2 23 80-102 190-212 (399)
171 PRK10862 SoxR reducing system 21.1 38 0.00083 27.8 0.5 69 278-347 68-136 (154)
172 COG1030 NfeD Membrane-bound se 20.7 5.6E+02 0.012 25.0 8.1 64 85-157 260-323 (436)
173 PF01102 Glycophorin_A: Glycop 20.6 72 0.0016 25.0 1.9 8 316-323 75-82 (122)
174 PRK13108 prolipoprotein diacyl 20.4 8.4E+02 0.018 24.1 23.4 25 310-334 254-278 (460)
175 PF09529 Intg_mem_TP0381: Inte 20.1 5.8E+02 0.012 22.1 14.4 60 91-159 52-112 (225)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=3.5e-37 Score=288.24 Aligned_cols=327 Identities=29% Similarity=0.595 Sum_probs=252.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCHHHHHHHHHHHHHH
Q 042257 11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERK-TRPKMTLPIFAKIALVSLFE 89 (383)
Q Consensus 11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 89 (383)
+|+.++++.+++..+.++...++.|.+++.+++|..+.++|+.++.++++++.++++|+ .+++.+++++..+.+.|+++
T Consensus 9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999998876543 33445678889999999998
Q ss_pred HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcc
Q 042257 90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWK 169 (383)
Q Consensus 90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~ 169 (383)
...+.+++.+++|++++.++++.++.|+++.+++++++.|+++.++|.+++|++|++++++|+.++...+++.... ++
T Consensus 89 -~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~-~~ 166 (358)
T PLN00411 89 -SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV-AS 166 (358)
T ss_pred -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc-cc
Confidence 7788899999999999999999999999999999999533333333333334999999999999988544421100 00
Q ss_pred hhhhhcc-cccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 042257 170 QVRLLHN-QLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTG 248 (383)
Q Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 248 (383)
+....+. ++.........+...|++++++++++||+|+++.|+..++++++...++++..++.+...+..+..++.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~ 246 (358)
T PLN00411 167 SPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPS 246 (358)
T ss_pred ccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 0000000 000000111223356999999999999999999999988887656777777777777776666665532333
Q ss_pred cceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257 249 IWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV 328 (383)
Q Consensus 249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~ 328 (383)
.|..........+++.++++.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+++|+.|+++.
T Consensus 247 ~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~ 326 (358)
T PLN00411 247 VWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAV 326 (358)
T ss_pred cceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 33322222345577777777789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCC
Q 042257 329 LWGRNKDRSPS 339 (383)
Q Consensus 329 ~~~~~~~~~~~ 339 (383)
.+.++++.+++
T Consensus 327 ~~~~~~~~~~~ 337 (358)
T PLN00411 327 MWGKANEEKDQ 337 (358)
T ss_pred Hhhhhhhhhhc
Confidence 88666554433
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=5.5e-31 Score=242.57 Aligned_cols=277 Identities=16% Similarity=0.205 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042257 17 YLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNL 96 (383)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 96 (383)
.+..++..++||.+.++.|... ++++|..++++|+.++.++++++...++++ ..+++++......|.++...++.+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~ 85 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGV-ESWPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAVGNGM 85 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999985 799999999999999999998887654322 234677888888898876778889
Q ss_pred HHhhc-cccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhc
Q 042257 97 YYTGM-KYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLH 175 (383)
Q Consensus 97 ~~~al-~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~ 175 (383)
++.+. ++++++.++++.++.|+++.+++++ +|||+++++ ++|++++++|+.++...+
T Consensus 86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv~ll~~~~--------------- 143 (292)
T PRK11272 86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGIVLLNSGG--------------- 143 (292)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhHHHHhcCc---------------
Confidence 99999 9999999999999999999999986 699999998 999999999998876211
Q ss_pred ccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccc
Q 042257 176 NQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFD 255 (383)
Q Consensus 176 ~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 255 (383)
..+....|++++++++++||.|.+..|+..++ + +...+.++...+.+...+.....+. +.. ..++.
T Consensus 144 ---------~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~ 209 (292)
T PRK11272 144 ---------NLSGNPWGAILILIASASWAFGSVWSSRLPLP-V-GMMAGAAEMLAAGVVLLIASLLSGE-RLT--ALPTL 209 (292)
T ss_pred ---------ccccchHHHHHHHHHHHHHHHHHHHHHhcCCC-c-chHHHHHHHHHHHHHHHHHHHHcCC-ccc--ccCCH
Confidence 11223579999999999999999999997543 2 3456677888887777776654332 111 11244
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257 256 AKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRN 333 (383)
Q Consensus 256 ~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~ 333 (383)
..|..+++++++ +.+++.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++++.|+++..+.++
T Consensus 210 ~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 210 SGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999 999999999999999999999999999999999999999999999999999999999999877544
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=8.5e-31 Score=242.17 Aligned_cols=280 Identities=19% Similarity=0.265 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042257 16 PYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQN 95 (383)
Q Consensus 16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (383)
..++.++++++||.+.++.|... ++++|..++++|+.++++.++++.. ++ +.+++ .....|++.....+.
T Consensus 5 ~~l~~l~~~~~Wg~~~~~~k~~~-~~~~p~~~~~~R~~~a~~~l~~~~~---~~---~~~~~---~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGL-HNMPPLMLAGLRFMLVAFPAIFFVA---RP---KVPLN---LLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHhc---CC---CCchH---HHHHHHHHHHHHHHH
Confidence 34678899999999999999986 7899999999999998776655431 11 11222 234445555455666
Q ss_pred HHHhhccc-cchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhh
Q 042257 96 LYYTGMKY-TTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLL 174 (383)
Q Consensus 96 ~~~~al~~-~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 174 (383)
+++.+++| .+++.++++.++.|+++.+++++++|||++.++ +++++++++|+.++...+.
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~~~~~------------- 135 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLIEDSL------------- 135 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhccccC-------------
Confidence 77889988 588999999999999999999999999999998 9999999999998873110
Q ss_pred cccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHHHHHHHHhhhcCCC--ccc
Q 042257 175 HNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAE--LSLTALICFMSSVEGTILTLAIERGNT--GIW 250 (383)
Q Consensus 175 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~ 250 (383)
........|++++++++++|+.|.++.|+..++.+++ .....+....+.+.........+.... ..+
T Consensus 136 ---------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (299)
T PRK11453 136 ---------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSL 206 (299)
T ss_pred ---------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Confidence 1112234799999999999999999999987654432 233445555554444433333332010 112
Q ss_pred eeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhh
Q 042257 251 LLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVL 329 (383)
Q Consensus 251 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~ 329 (383)
...+...|..++++|++ +.++|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++|++|+++..
T Consensus 207 ~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 207 VTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV 286 (299)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence 22344679999999999 99999999999999999999999999999999999999999999999999999999999887
Q ss_pred hccC
Q 042257 330 WGRN 333 (383)
Q Consensus 330 ~~~~ 333 (383)
+.++
T Consensus 287 ~~~~ 290 (299)
T PRK11453 287 FGLR 290 (299)
T ss_pred cchh
Confidence 7665
No 4
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=100.00 E-value=9.1e-31 Score=241.50 Aligned_cols=282 Identities=13% Similarity=0.084 Sum_probs=212.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCC--C-CCCHHHHHHHHHH
Q 042257 9 FLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTR--P-KMTLPIFAKIALV 85 (383)
Q Consensus 9 ~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~ 85 (383)
+|+++.+|.+++++++++||..+++.|.. .+++|.+++++|+.++.+++.++...+++... + ..+++++. ....
T Consensus 2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~--~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (296)
T PRK15430 2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI--YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAV 78 (296)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHH
Confidence 56678899999999999999999999986 57999999999999999888777655432110 0 11234433 3346
Q ss_pred HHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCccc
Q 042257 86 SLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILK 165 (383)
Q Consensus 86 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~ 165 (383)
+.++.+.++.++++|++++|++.++++.++.|+++++++++++|||++.++ ++|++++++|++++...++
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~~~~---- 148 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLWTFG---- 148 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHcC----
Confidence 666668899999999999999999999999999999999999999999998 9999999999999873211
Q ss_pred CCcchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhc
Q 042257 166 FPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIER 244 (383)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~ 244 (383)
.. ..++++++++||.|.++.|+..++.. +....+.+....+.+...+.. ..
T Consensus 149 -------------------~~------~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 200 (296)
T PRK15430 149 -------------------SL------PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DS 200 (296)
T ss_pred -------------------Cc------cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cC
Confidence 10 14688899999999999888643221 112223333333333222111 11
Q ss_pred CCCccceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHH
Q 042257 245 GNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIG 324 (383)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g 324 (383)
+...+...+...+..++..|+.+.+++.++++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|+.|
T Consensus 201 -~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~ 279 (296)
T PRK15430 201 -STSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVA 279 (296)
T ss_pred -CcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1111111111223444444555889999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhhcc
Q 042257 325 LYMVLWGR 332 (383)
Q Consensus 325 v~l~~~~~ 332 (383)
+.+.....
T Consensus 280 ~~v~~~~~ 287 (296)
T PRK15430 280 LAIFVMDA 287 (296)
T ss_pred HHHHHHHH
Confidence 87776543
No 5
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.98 E-value=6.2e-30 Score=235.63 Aligned_cols=281 Identities=12% Similarity=0.055 Sum_probs=223.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHH
Q 042257 10 LSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFE 89 (383)
Q Consensus 10 ~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 89 (383)
..++.+++.++++++++|+.++.+.|++. ++.||..+.++|++++.++++++... ++ .+.+++++...+..|.+.
T Consensus 7 ~~~~~~~~~~~~la~~~~~~~~~~~K~~~-~~~~~~~~~~~R~~~a~l~l~~~~~~--~~--~~~~~~~~~~~~~~g~~~ 81 (293)
T PRK10532 7 KLPVWLPILLLLIAMASIQSGASLAKSLF-PLVGAPGVTALRLALGTLILIAIFKP--WR--LRFAKEQRLPLLFYGVSL 81 (293)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHHHhH--Hh--ccCCHHHHHHHHHHHHHH
Confidence 34568899999999999999999999996 67999999999999999988866532 11 123467777788888875
Q ss_pred HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcc
Q 042257 90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWK 169 (383)
Q Consensus 90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~ 169 (383)
...+.+++++++|+|++.++++..+.|+++.+++. |++. + ..++.++++|+.++...+.
T Consensus 82 -~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~------~~~~~i~~~Gv~li~~~~~-------- 140 (293)
T PRK10532 82 -GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--D------FVWVVLAVLGLWFLLPLGQ-------- 140 (293)
T ss_pred -HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--H------HHHHHHHHHHHheeeecCC--------
Confidence 78888999999999999999999999999988763 4432 2 5567788999988762111
Q ss_pred hhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 042257 170 QVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGI 249 (383)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 249 (383)
+.......|++++++++++||+|.+..|+..++.+ +... .+....+.+...+.....+ ....
T Consensus 141 --------------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~--~~~~ 202 (293)
T PRK10532 141 --------------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQA--GEAL 202 (293)
T ss_pred --------------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHcc--Cccc
Confidence 11122357999999999999999999999877655 4444 4556666666666555322 1111
Q ss_pred ceeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257 250 WLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV 328 (383)
Q Consensus 250 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~ 328 (383)
.+...|..++++|++ +.+++.++++++++.++++++.+.+++|+++.+++++++||+++..+++|+++|++|++..
T Consensus 203 ---~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~ 279 (293)
T PRK10532 203 ---WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGS 279 (293)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 122346667789999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCC
Q 042257 329 LWGRNKDRS 337 (383)
Q Consensus 329 ~~~~~~~~~ 337 (383)
.+..+++.|
T Consensus 280 ~~~~~~~~~ 288 (293)
T PRK10532 280 TLTIRREPK 288 (293)
T ss_pred HhcCCCCCC
Confidence 877655444
No 6
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.98 E-value=2.9e-30 Score=238.03 Aligned_cols=285 Identities=14% Similarity=0.097 Sum_probs=214.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 042257 13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVI 92 (383)
Q Consensus 13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 92 (383)
+.++++++++++++||.+++..|... ++++|..+.++|+.++.++++++.. +++.++ +. ++....+.++...
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~-~~~~P~~~~~~R~~~a~l~l~~~~~---~~~~~~---~~-~~~~~~~~l~~~~ 73 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVS-ESLGPVGGAAMIYSVSGLLLLLTVG---FPRLRQ---FP-KRYLLAGGLLFVS 73 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHHHHcc---cccccc---cc-HHHHHHHhHHHHH
Confidence 45678899999999999999999985 8899999999999999999886531 111111 11 2234445556577
Q ss_pred HHHHHHhhccc----cchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc
Q 042257 93 SQNLYYTGMKY----TTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW 168 (383)
Q Consensus 93 ~~~~~~~al~~----~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~ 168 (383)
.+.+++.++++ .+++.++++.++.|+++.+++++++|||+++++ ++|++++++|++++...+ +..+ +
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~------~~g~~l~~~Gv~li~~~~-~~~~--~ 144 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLL------IPGLLLALAGVAWVLGGD-NGLS--L 144 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHH------HHHHHHHHHhHhheecCC-ccch--h
Confidence 78888877754 577888999999999999999999999999998 999999999999987321 1000 0
Q ss_pred chhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 042257 169 KQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTG 248 (383)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 248 (383)
.+. .........|++++++++++||+|+++.||..++.+ +..... ..+.+...+.... +. ..
T Consensus 145 --~~~---------~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~~---~~~~~~l~~~~~~-~~-~~- 206 (295)
T PRK11689 145 --AEL---------INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLFF---ILTALALWIKYFL-SP-QP- 206 (295)
T ss_pred --hhh---------hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHHH---HHHHHHHHHHHHH-hc-Cc-
Confidence 000 001112346999999999999999999999876654 343322 2233333332222 22 11
Q ss_pred cceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257 249 IWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV 328 (383)
Q Consensus 249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~ 328 (383)
.. ..+...|..+++.++.+.++|.+|++++|+.++++++.+.+++|+++++++++++||+++..+++|+++|+.|+++.
T Consensus 207 ~~-~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 207 AM-VFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 11 12334677777777559999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhccC
Q 042257 329 LWGRN 333 (383)
Q Consensus 329 ~~~~~ 333 (383)
.+.++
T Consensus 286 ~~~~~ 290 (295)
T PRK11689 286 WLATR 290 (295)
T ss_pred hhhHh
Confidence 65443
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.97 E-value=1.3e-29 Score=229.97 Aligned_cols=257 Identities=18% Similarity=0.245 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 042257 27 YSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTA 106 (383)
Q Consensus 27 ~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~ 106 (383)
||.+++..|..++...|+....+.|++.+.+++.++...+ .+++++.+....|.++..+++.++++|++|+++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 8899999999876788999999999999988887765432 235666778888888889999999999999999
Q ss_pred hhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCc
Q 042257 107 TFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNE 186 (383)
Q Consensus 107 ~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (383)
++++++.++.|+++.+++++++|||+++++ ++|+.++++|++++.. ++ ..
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~li~~-~~-----------------------~~ 123 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAVLLLS-DG-----------------------NL 123 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhhcc-CC-----------------------cc
Confidence 999999999999999999999999999998 9999999999999862 21 12
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHH
Q 042257 187 EDLTKGALLIAAGCFAWSCFIILQAFLLKSYPA-ELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGG 265 (383)
Q Consensus 187 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 265 (383)
+....|+.++++++++|+.+.++.|+..++.+. +.....+.+..+.+...+.....+. . .. .+...|..+++.+
T Consensus 124 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~---~~~~~~~~~~~~~ 198 (260)
T TIGR00950 124 SINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGP-N-PQ---ALSLQWGALLYLG 198 (260)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCC-C-CC---cchHHHHHHHHHH
Confidence 234689999999999999999999998876652 2344556778888887777665332 1 11 1345677788889
Q ss_pred HH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHH
Q 042257 266 FV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGL 325 (383)
Q Consensus 266 ~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv 325 (383)
++ +.+++.++++++++.++++++.+.+++|+++++++++++||+++..+++|+++++.|+
T Consensus 199 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 199 LIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 98 8999999999999999999999999999999999999999999999999999999986
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=6.8e-29 Score=230.03 Aligned_cols=284 Identities=14% Similarity=0.106 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042257 18 LGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLY 97 (383)
Q Consensus 18 l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 97 (383)
++.++..++-....+..|.+++.-..|...+++|+.++.+.+.+... .+.+++++.+++++..++..|+++ +....+.
T Consensus 5 ~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 82 (302)
T TIGR00817 5 LLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSALLKLLLPVAIVH-TIGHVTS 82 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 34445555555566789999744477999999999998877765521 122334556789999999999997 8889999
Q ss_pred HhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhccc
Q 042257 98 YTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQ 177 (383)
Q Consensus 98 ~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~ 177 (383)
+++++|++++.++++.++.|+++++++++++|||++.++ ++|++++++|+.+.. .+
T Consensus 83 ~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv~l~~--~~---------------- 138 (302)
T TIGR00817 83 NVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGVALAS--DT---------------- 138 (302)
T ss_pred HHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHhhhc--CC----------------
Confidence 999999999999999999999999999999999999998 999999999998754 11
Q ss_pred ccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhh--cCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc--ccee-
Q 042257 178 LETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLK--SYPAELSLTALICFMSSVEGTILTLAIERGNTG--IWLL- 252 (383)
Q Consensus 178 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~- 252 (383)
..+....|++++++++++|++|.++.||..+ +.+ +...+.+++..+.+.+.|.....+..+.. .+..
T Consensus 139 -------~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~ 210 (302)
T TIGR00817 139 -------ELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQA 210 (302)
T ss_pred -------cccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHh
Confidence 1123357999999999999999999999887 554 58899999999999999888765421111 1100
Q ss_pred ----ccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH
Q 042257 253 ----HFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYM 327 (383)
Q Consensus 253 ----~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l 327 (383)
.....+...+..++. ....+.+++++++++++++.++..+++|+++++++++++||+++..+++|+++++.|+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l 290 (302)
T TIGR00817 211 ISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFL 290 (302)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHH
Confidence 000112222233332 333345667899999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCC
Q 042257 328 VLWGRNKD 335 (383)
Q Consensus 328 ~~~~~~~~ 335 (383)
+.+.|+++
T Consensus 291 ~~~~k~~~ 298 (302)
T TIGR00817 291 YSRVKAQK 298 (302)
T ss_pred HHHHhccC
Confidence 98765543
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.96 E-value=7.8e-27 Score=213.90 Aligned_cols=273 Identities=17% Similarity=0.210 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhh-cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042257 17 YLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLE-RKTRPKMTLPIFAKIALVSLFEPVISQN 95 (383)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (383)
.++.++++++|+..++..|... ++.++ ..++++....++++++..++. ++.++..+++.+. ....+.++....+.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~-~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHA-DKEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWL-LLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-CchhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHH-HHHHHHHHHHHHHH
Confidence 5788999999999999999653 33344 347777777777777776532 2223333344444 44445555589999
Q ss_pred HHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhc
Q 042257 96 LYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLH 175 (383)
Q Consensus 96 ~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~ 175 (383)
+++.++++.+++.++++.++.|+++.+++++++|||++.++ ++|+.+++.|+.++...+
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~~~~--------------- 137 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLGLSR--------------- 137 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHhccc---------------
Confidence 99999999999999999999999999999999999999998 999999999999887321
Q ss_pred ccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH---HHHHHHHHHHHHHHHHHHhhhcCCCcccee
Q 042257 176 NQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELS---LTALICFMSSVEGTILTLAIERGNTGIWLL 252 (383)
Q Consensus 176 ~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 252 (383)
....+..|+.++++++++|++|.++.|+..++.++... .+.+......+...+.....+. . ....
T Consensus 138 ---------~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~ 205 (281)
T TIGR03340 138 ---------FAQHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHG-R--SMFP 205 (281)
T ss_pred ---------ccccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhc-c--chhh
Confidence 11122468889999999999999998876444332111 2222222221111111111111 1 1111
Q ss_pred ccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH
Q 042257 253 HFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYM 327 (383)
Q Consensus 253 ~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l 327 (383)
....+..+++.+.+ +.++|.++++++++.++++++.+.+++|+++.+++++++||+++..+++|++++++|+.+
T Consensus 206 -~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 206 -YARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 22244555666777 999999999999999999999999999999999999999999999999999999999875
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=1.8e-26 Score=217.02 Aligned_cols=285 Identities=15% Similarity=0.138 Sum_probs=223.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--CHHHHHHHHHHHHHH
Q 042257 13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMS-PYVLVAYRMVVATILIAPFAFVLERKTRPKM--TLPIFAKIALVSLFE 89 (383)
Q Consensus 13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~ 89 (383)
+.+..++.+....+-.......|..+ +.+| |+.++++|++++.+++..++.. +.+++++. .++++..++..|+++
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl-~~~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~ 124 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLAL-NMLPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCH 124 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 45566667777777777888999987 6689 9999999999998876555432 22222333 345788899999998
Q ss_pred HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcc
Q 042257 90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWK 169 (383)
Q Consensus 90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~ 169 (383)
. ..+...+.|+++++++.++++.++.|+++++++++++|||++.++ +++++++++|+++.+. +
T Consensus 125 ~-~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l~~~--~-------- 187 (350)
T PTZ00343 125 L-FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVALASV--K-------- 187 (350)
T ss_pred H-HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHheec--c--------
Confidence 4 446667799999999999999999999999999999999999998 9999999999999873 1
Q ss_pred hhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC------chhHHHHHHHHHHHHHHHHHHHhhh
Q 042257 170 QVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYP------AELSLTALICFMSSVEGTILTLAIE 243 (383)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~ 243 (383)
..+....|++++++|+++++++.++.|+..++.+ ++.....++...+.++.+|+....|
T Consensus 188 ---------------~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e 252 (350)
T PTZ00343 188 ---------------ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFE 252 (350)
T ss_pred ---------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122467999999999999999999999887643 2345666678899999988887655
Q ss_pred cCC-Cccce----eccchhHHHHHHHHHHHHHHHHHHHH----HHhccCccceeecchhHHHHHHHHHHHHhcccccchh
Q 042257 244 RGN-TGIWL----LHFDAKLLAVIYGGFVSCTAYFIMGW----LMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGR 314 (383)
Q Consensus 244 ~~~-~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~----a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~ 314 (383)
... ...+. ......+..+++..+.+++.+++++. +++++++.+.+...+++|+++++++++++||+++..+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~ 332 (350)
T PTZ00343 253 GKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLG 332 (350)
T ss_pred hHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHh
Confidence 311 11110 00111223344433338888888884 9999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhc
Q 042257 315 IIGAVIIVIGLYMVLWG 331 (383)
Q Consensus 315 ~~G~~li~~gv~l~~~~ 331 (383)
++|+++++.|++++++.
T Consensus 333 ~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 333 YLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998764
No 11
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=4e-26 Score=209.24 Aligned_cols=302 Identities=14% Similarity=0.178 Sum_probs=241.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCHHHHHHHHHHHHH
Q 042257 11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMS-PYVLVAYRMVVATILIAPFAFVLERK-TRPKMTLPIFAKIALVSLF 88 (383)
Q Consensus 11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 88 (383)
++.++.+++.-+.+++-..+.+.+..+.+.+.+ |....++.+....++..++..+++++ ...+..+++|++.++.+++
T Consensus 9 ~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~ 88 (334)
T PF06027_consen 9 RRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALL 88 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHH
Confidence 345667788888888888888888887555555 88888888888888877776665433 2222334566777888888
Q ss_pred HHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc
Q 042257 89 EPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW 168 (383)
Q Consensus 89 ~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~ 168 (383)
- ..++.+.+.|++|++.+.++++.++..+++++++++++|+|+++.+ ++|+++++.|++++...+...
T Consensus 89 D-v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~------~~gv~i~i~Gv~lv~~sD~~~----- 156 (334)
T PF06027_consen 89 D-VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFH------ILGVLICIAGVVLVVVSDVLS----- 156 (334)
T ss_pred H-HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHH------HHHHHHHHhhhhheeeecccc-----
Confidence 7 8999999999999999999999999999999999999999999998 999999999999988654321
Q ss_pred chhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 042257 169 KQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTG 248 (383)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 248 (383)
..++....+...|++++++|+++||+++++.++..++.+ ......+..+.+.++..+...+.|..+.+
T Consensus 157 -----------~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~ 224 (334)
T PF06027_consen 157 -----------GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIE 224 (334)
T ss_pred -----------cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhh
Confidence 011124556789999999999999999999999999876 57888889999999998888887764554
Q ss_pred cceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257 249 IWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV 328 (383)
Q Consensus 249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~ 328 (383)
...+.+ ..+..++.-++..+.-|.+....++..+|+..+.-..+..+++++++++++|+++++..++|.++|++|.+++
T Consensus 225 ~~~w~~-~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy 303 (334)
T PF06027_consen 225 SIHWTS-QVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVY 303 (334)
T ss_pred ccCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheE
Confidence 443322 2233333333335666777888999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCC
Q 042257 329 LWGRNKDRS 337 (383)
Q Consensus 329 ~~~~~~~~~ 337 (383)
...+++.++
T Consensus 304 ~~~~~~~~~ 312 (334)
T PF06027_consen 304 NLAESPEEE 312 (334)
T ss_pred EccCCcccc
Confidence 877765443
No 12
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.95 E-value=3.7e-25 Score=200.20 Aligned_cols=248 Identities=13% Similarity=0.140 Sum_probs=184.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCCCCHH-HHHHHHHHHHH
Q 042257 15 KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKT-----RPKMTLP-IFAKIALVSLF 88 (383)
Q Consensus 15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~g~~ 88 (383)
+|++++++++++||.+.++.|.. .+++|.+++++|++++.++++++...++++. .++.+++ .+..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~--~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL--KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 58999999999999999999985 4699999999999999988877654433211 1111222 23445666666
Q ss_pred HHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc
Q 042257 89 EPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW 168 (383)
Q Consensus 89 ~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~ 168 (383)
. ..++.++++|++++++++++++.++.|+++++++++++|||++.++ +++++++++|++++...++
T Consensus 80 ~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~~~------- 145 (256)
T TIGR00688 80 I-GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVLKG------- 145 (256)
T ss_pred H-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHcC-------
Confidence 4 8999999999999999999999999999999999999999999998 9999999999998863211
Q ss_pred chhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 042257 169 KQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTG 248 (383)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 248 (383)
. . ..++++++++|+.|.+..|+..++ +. .... .......+...+.... .. ...
T Consensus 146 ----------------~-~-----~~~~l~aa~~~a~~~i~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~-~~-~~~ 198 (256)
T TIGR00688 146 ----------------S-L-----PWEALVLAFSFTAYGLIRKALKNT-DL-AGFC-LETLSLMPVAIYYLLQ-TD-FAT 198 (256)
T ss_pred ----------------C-c-----hHHHHHHHHHHHHHHHHHhhcCCC-Cc-chHH-HHHHHHHHHHHHHHHH-hc-cCc
Confidence 1 0 135788999999999999987543 21 2211 1122222222222111 11 111
Q ss_pred cceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHH
Q 042257 249 IWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFF 305 (383)
Q Consensus 249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~ 305 (383)
.....+...|..++..|+++.++|.++++++|+.++++++++.+++|+++.++++++
T Consensus 199 ~~~~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 199 VQQTNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 111112237888888887788999999999999999999999999999999999864
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.92 E-value=1.4e-22 Score=186.55 Aligned_cols=282 Identities=21% Similarity=0.335 Sum_probs=215.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHH
Q 042257 11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQG-MSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFE 89 (383)
Q Consensus 11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 89 (383)
++...+....++..+.|+......|... ++ .++....+.|...+.++..+.....+... .+..++ +......+.++
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 79 (292)
T COG0697 3 RALLLGLLALLLWGLLWGLSFIALKLAV-ESLDPFLFAAALRFLIAALLLLPLLLLEPRGL-RPALRP-WLLLLLLALLG 79 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCChHHHHHHHHHHHHHHHHHHHHhhcccc-cccccc-hHHHHHHHHHH
Confidence 3456678888888999999999999985 54 67777777799999888443333221111 111112 34566667777
Q ss_pred HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHH-HHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc
Q 042257 90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAW-IFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW 168 (383)
Q Consensus 90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~-~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~ 168 (383)
....+.+++.++++++++.++++.++.|+++.++++ +++|||+++++ ++++.+++.|++++...+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Gv~lv~~~~~~------ 147 (292)
T COG0697 80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQ------ILGILLALAGVLLILLGGGG------ 147 (292)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHheecCCCc------
Confidence 799999999999999999999999999999999997 66799999998 99999999999999842211
Q ss_pred chhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHH-HHHHHHHHHHHHHHHhhhcCCC
Q 042257 169 KQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTA-LICFMSSVEGTILTLAIERGNT 247 (383)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~ 247 (383)
.... ...|+.++++++++++++.+..|+.. +.+ +..... +... ............. .
T Consensus 148 ---------------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~~--~ 205 (292)
T COG0697 148 ---------------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL--LALLLLLLFFLSG--F 205 (292)
T ss_pred ---------------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH--HHHHHHHHHHhcc--c
Confidence 0111 57899999999999999999999887 433 334343 3333 1111111111111 1
Q ss_pred ccceeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHH
Q 042257 248 GIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLY 326 (383)
Q Consensus 248 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~ 326 (383)
. .......+..+.+.|++ +++++.++++++++.++...+++.+++|+++.++++++++|+++..+++|+++++.|+.
T Consensus 206 ~--~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~ 283 (292)
T COG0697 206 G--APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVL 283 (292)
T ss_pred c--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 1 22233568888888999 77899999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhc
Q 042257 327 MVLWG 331 (383)
Q Consensus 327 l~~~~ 331 (383)
+....
T Consensus 284 l~~~~ 288 (292)
T COG0697 284 LASLR 288 (292)
T ss_pred HHhcc
Confidence 88766
No 14
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=177.45 Aligned_cols=282 Identities=13% Similarity=0.147 Sum_probs=230.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCC--C-CCCHHHHHHHHHHHH
Q 042257 11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTR--P-KMTLPIFAKIALVSL 87 (383)
Q Consensus 11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~ 87 (383)
++..+|+++.+.+.++||..+.+.|.. ++.++.++...|.+.+.++++.+....++... . ..+++.+..+.+.++
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll--~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~ 80 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLL--EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL 80 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH
Confidence 456789999999999999999999999 79999999999999999998877766543321 1 123455565666666
Q ss_pred HHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCC
Q 042257 88 FEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFP 167 (383)
Q Consensus 88 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~ 167 (383)
+. ..++..|.+|.++...-++++-++.+|++.++++.+++|||+++.| +++++++.+|+....+..|.
T Consensus 81 li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q------~iAV~lA~~GV~~~~~~~g~----- 148 (293)
T COG2962 81 LI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQ------WIAVGLAAAGVLIQTWLLGS----- 148 (293)
T ss_pred HH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHcCC-----
Confidence 54 9999999999999999999999999999999999999999999999 99999999999998875442
Q ss_pred cchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 042257 168 WKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNT 247 (383)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 247 (383)
.. ..++.=+++|++|..+-|+. +.+ ..+-....+..-.+..+...++.++ ..
T Consensus 149 --------------------lp----wval~la~sf~~Ygl~RK~~--~v~-a~~g~~lE~l~l~p~al~yl~~l~~-~~ 200 (293)
T COG2962 149 --------------------LP----WVALALALSFGLYGLLRKKL--KVD-ALTGLTLETLLLLPVALIYLLFLAD-SG 200 (293)
T ss_pred --------------------Cc----HHHHHHHHHHHHHHHHHHhc--CCc-hHHhHHHHHHHHhHHHHHHHHHHhc-Cc
Confidence 11 34555688999999875554 233 3566666677777776666666654 22
Q ss_pred ccceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH
Q 042257 248 GIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYM 327 (383)
Q Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l 327 (383)
+.....+...+..++..|.++.+...++..+.|+++-+..+.++|.+|.+-.+++++++||+++..+++..+.|.+|+.+
T Consensus 201 ~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l 280 (293)
T COG2962 201 QFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALAL 280 (293)
T ss_pred hhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 21222344578888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCC
Q 042257 328 VLWGRNK 334 (383)
Q Consensus 328 ~~~~~~~ 334 (383)
+.+..-+
T Consensus 281 ~~~d~l~ 287 (293)
T COG2962 281 FSIDGLY 287 (293)
T ss_pred HHHHHHH
Confidence 9876543
No 15
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.92 E-value=7.4e-23 Score=173.71 Aligned_cols=273 Identities=14% Similarity=0.096 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042257 16 PYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQN 95 (383)
Q Consensus 16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (383)
++++++.+.+.-=....+.|.++ +...+...+.+|..++.++++++.. +.+.+..+++|+.....|+.. ...|.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LF-P~vG~~g~t~lRl~~aaLIll~l~R----Pwr~r~~~~~~~~~~~yGvsL-g~MNl 86 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLF-PLVGAAGVTALRLAIAALILLALFR----PWRRRLSKPQRLALLAYGVSL-GGMNL 86 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHc-cccChhhHHHHHHHHHHHHHHHHhh----HHHhccChhhhHHHHHHHHHH-HHHHH
Confidence 68888888888888888999997 8899999999999999999987663 333566788899999999987 99999
Q ss_pred HHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhc
Q 042257 96 LYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLH 175 (383)
Q Consensus 96 ~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~ 175 (383)
+||.+++.+|.+.+..+.++.|+.+.+++- +| .++ .+.+.+++.|+.++.- .+
T Consensus 87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr--~~d------~vwvaLAvlGi~lL~p-~~-------------- 139 (292)
T COG5006 87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS----RR--LRD------FVWVALAVLGIWLLLP-LG-------------- 139 (292)
T ss_pred HHHHHHHhccchhhhhhhhccHHHHHHHhc----cc--hhh------HHHHHHHHHHHHhhee-cc--------------
Confidence 999999999999999999999998776642 22 244 7778888999988872 22
Q ss_pred ccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccc
Q 042257 176 NQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFD 255 (383)
Q Consensus 176 ~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 255 (383)
+.....+..|..+++.++.||+.|.+..||..+..+ ....+...+.++.++.+|+..... ...+ .++
T Consensus 140 -------~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~a---g~~l--~~p 206 (292)
T COG5006 140 -------QSVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQA---GPAL--FSP 206 (292)
T ss_pred -------CCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhc---chhh--cCh
Confidence 135566789999999999999999999999876544 367788899999999999887322 1122 233
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCC
Q 042257 256 AKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNK 334 (383)
Q Consensus 256 ~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~ 334 (383)
.-...-+..|++ +.+.|.+-..++++.+....+.+.+++|.++.+.|++++||.++..||.|++.|+.+..-..+..+|
T Consensus 207 ~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 207 SLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 355666777888 9999999999999999999999999999999999999999999999999999999988766654444
No 16
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.91 E-value=7e-26 Score=193.14 Aligned_cols=292 Identities=16% Similarity=0.165 Sum_probs=220.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 042257 13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVI 92 (383)
Q Consensus 13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 92 (383)
..+|.++..++.++-..+.+..|.. ..+|....-.|++.-.+.-+|..+.++.....+...| .++++.|+.| ..
T Consensus 36 p~~gl~l~~vs~ff~~~~vv~t~~~---e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG-~t 109 (346)
T KOG4510|consen 36 PNLGLLLLTVSYFFNSCMVVSTKVL---ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMG-FT 109 (346)
T ss_pred CccCceehhhHHHHhhHHHhhhhhh---ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhh-hh
Confidence 4567777777744444444444444 6889999999987777777766555444331222222 3467788888 67
Q ss_pred HHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhh
Q 042257 93 SQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVR 172 (383)
Q Consensus 93 ~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~ 172 (383)
+..+.|+|++|++.++++++.+..|+|+.+++|+++|||.++.+ .++..+.+.|+++++- |..-+.
T Consensus 110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIvR---PpFlFG----- 175 (346)
T KOG4510|consen 110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIVR---PPFLFG----- 175 (346)
T ss_pred HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEec---CCcccC-----
Confidence 77788899999999999999999999999999999999999998 9999999999999873 221111
Q ss_pred hhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcccee
Q 042257 173 LLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLL 252 (383)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 252 (383)
+++..+. +.....+.+|...++.++++.|...++.|+..|+.+.-+. +.|..+++.+...+.... ...+.+
T Consensus 176 --~~t~g~~-~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~ms-vsyf~~i~lV~s~I~~~~-----ig~~~l 246 (346)
T KOG4510|consen 176 --DTTEGED-SSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMS-VSYFSLITLVVSLIGCAS-----IGAVQL 246 (346)
T ss_pred --CCccccc-cccccccCCchHHHHHhHhhhhhHHHHHHHhhccccEEEE-ehHHHHHHHHHHHHHHhh-----ccceec
Confidence 1111111 1123455678899999999999999999999888875333 444455555555444432 223443
Q ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhc
Q 042257 253 HF-DAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWG 331 (383)
Q Consensus 253 ~~-~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~ 331 (383)
+. ..+|+.++.+|+++++++.+...++++..+..++++.+++.+++.++++++|+|.|+++.|+|+++|+.+.+.....
T Consensus 247 P~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~ 326 (346)
T KOG4510|consen 247 PHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALK 326 (346)
T ss_pred CccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHH
Confidence 33 46788888899999999999999999999999999999999999999999999999999999999999998877765
Q ss_pred cC
Q 042257 332 RN 333 (383)
Q Consensus 332 ~~ 333 (383)
|.
T Consensus 327 kw 328 (346)
T KOG4510|consen 327 KW 328 (346)
T ss_pred HH
Confidence 54
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.88 E-value=1.1e-20 Score=173.45 Aligned_cols=279 Identities=16% Similarity=0.157 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042257 16 PYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQN 95 (383)
Q Consensus 16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (383)
++++.++++++||...+..|.. .+.++.++. |..++.+++..+....+.+. ...++.+..-++.|++ ...++.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~--~g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~-w~ig~~ 74 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKI--GGGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAF-WALGQI 74 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhcc--CCCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHH-HHhhhh
Confidence 6789999999999999999998 378887765 67777776665555433211 2224444444444444 588999
Q ss_pred HHHhhccccchhhHHHhhh-hhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhh
Q 042257 96 LYYTGMKYTTATFTVAMCN-ILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLL 174 (383)
Q Consensus 96 ~~~~al~~~~~~~a~~l~~-~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 174 (383)
+++.++++++.+.+.++.+ +.+++..+.+.+++||+.+.++ ...-.+|++++++|++++...+++.
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~--~~~~~~g~~l~l~G~~l~~~~~~~~----------- 141 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQ--TLLGLLALILIIIGVYLTSRSKDKS----------- 141 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhHheEEeccccc-----------
Confidence 9999999999999999987 8899999999999999997762 0111788999999988875322110
Q ss_pred cccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH---HHHHHHHHHHHhhhcCCCccce
Q 042257 175 HNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICF---MSSVEGTILTLAIERGNTGIWL 251 (383)
Q Consensus 175 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~ 251 (383)
.++....+..+|++++++++++|+.|.+..|+. +.+ |....+.+.. .+.++..+... . . .++
T Consensus 142 ------~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~~---~-~-~~~- 206 (290)
T TIGR00776 142 ------AGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGHI---L-A-KPL- 206 (290)
T ss_pred ------cccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHHh---c-c-cch-
Confidence 000000233679999999999999999999976 344 4555333333 33322222110 1 1 112
Q ss_pred eccchhHHHHHHHHHHHHHHHHHHHHHHh-ccCccceeecchhHHHHHHHHHHHHhcccccchhh----hhHHHHHHHHH
Q 042257 252 LHFDAKLLAVIYGGFVSCTAYFIMGWLMK-RRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRI----IGAVIIVIGLY 326 (383)
Q Consensus 252 ~~~~~~~~~~~~~g~~~~~~~~~~~~a~~-~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~----~G~~li~~gv~ 326 (383)
.+...+..++ .|++..+++.+|..+.+ +.+++..+.+.+.+|+.+.++++++++|+.++.++ +|+++++.|+.
T Consensus 207 -~~~~~~~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~ 284 (290)
T TIGR00776 207 -KKYAILLNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAAN 284 (290)
T ss_pred -HHHHHHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHH
Confidence 2223344444 78889999999999999 99999999999999999999999999999999999 99999999998
Q ss_pred Hhhhc
Q 042257 327 MVLWG 331 (383)
Q Consensus 327 l~~~~ 331 (383)
+....
T Consensus 285 l~~~~ 289 (290)
T TIGR00776 285 ILGIG 289 (290)
T ss_pred HHhcc
Confidence 87543
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.87 E-value=7e-20 Score=169.53 Aligned_cols=268 Identities=14% Similarity=0.175 Sum_probs=214.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHH
Q 042257 43 SPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFL 122 (383)
Q Consensus 43 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~l 122 (383)
.|..+++.++....+...+.....+++..++ ..+..++..+++. .++..+.+.|++|+|.+...++.+..|+++++
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi 106 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRK---IPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMI 106 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccccCCCc---ChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHH
Confidence 4889999999999988887666544222233 3345566677776 88899999999999999999999999999999
Q ss_pred HHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHHH
Q 042257 123 MAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFA 202 (383)
Q Consensus 123 l~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~ 202 (383)
++.+++|+|.+.++ +.++++..+|+.+....+.+. ++..+........|+++.+++.++
T Consensus 107 ~~~l~~~k~y~~~~------~~~v~li~~Gv~~~~~~~~~~---------------~~~~~~~~~~~~~G~~ll~~sl~~ 165 (303)
T PF08449_consen 107 LGVLILGKRYSRRQ------YLSVLLITIGVAIFTLSDSSS---------------SSSSNSSSFSSALGIILLLLSLLL 165 (303)
T ss_pred HHHHhcCccccHHH------HHHHHHHHhhHheeeeccccc---------------ccccccccccchhHHHHHHHHHHH
Confidence 99999999999998 999999999999988654321 011111222223499999999999
Q ss_pred HHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHh--hhc-CCCccceeccchhHHHHHHHHHHHHHHHHHHHHH
Q 042257 203 WSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLA--IER-GNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWL 278 (383)
Q Consensus 203 ~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a 278 (383)
.++..+++++..++++ ++...+++.+..+.+...+.... .+. .+...+....+..+..++...+.+.+++.+.++.
T Consensus 166 ~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~ 245 (303)
T PF08449_consen 166 DAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYL 245 (303)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998776 45789999999999988888776 221 0111222223345666666666688888899999
Q ss_pred HhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCC
Q 042257 279 MKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKD 335 (383)
Q Consensus 279 ~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~ 335 (383)
.++.++...+++..++.+++++++++++++++++.+|+|.++++.|..++.+.++|+
T Consensus 246 ~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 246 IKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999877764
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.82 E-value=4.8e-19 Score=158.81 Aligned_cols=301 Identities=11% Similarity=0.151 Sum_probs=231.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHH----Hhh--hcC-C-------C--
Q 042257 10 LSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGM--SPYVLVAYRMVVATILIAPFA----FVL--ERK-T-------R-- 71 (383)
Q Consensus 10 ~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~r~~~~~~~~~~~~----~~~--~~~-~-------~-- 71 (383)
..+...|++++++..++|-.+.-+.+..++++. .|+..++.....-.+.+.++. .++ .++ . .
T Consensus 9 ~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~ 88 (416)
T KOG2765|consen 9 RWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEA 88 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhh
Confidence 345678999999999999999999999885443 488777665544433333322 110 000 0 0
Q ss_pred ------------------------------------------------C--C-CCH-----------HHHHHH-HHHHHH
Q 042257 72 ------------------------------------------------P--K-MTL-----------PIFAKI-ALVSLF 88 (383)
Q Consensus 72 ------------------------------------------------~--~-~~~-----------~~~~~~-~~~g~~ 88 (383)
. + ..+ ++..+. +....+
T Consensus 89 d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~l 168 (416)
T KOG2765|consen 89 DAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPL 168 (416)
T ss_pred hhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 0 0 011 123333 333444
Q ss_pred HHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc
Q 042257 89 EPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW 168 (383)
Q Consensus 89 ~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~ 168 (383)
..++++.+..|+.+++++..+++.++.-+|+..++.++.+||++... ++++++.+.|++++...+..
T Consensus 169 -WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sK------llav~~si~GViiVt~~~s~------ 235 (416)
T KOG2765|consen 169 -WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSK------LLAVFVSIAGVIIVTMGDSK------ 235 (416)
T ss_pred -HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHH------HHHHHHhhccEEEEEecccc------
Confidence 48899999999999999999999999999999999999999999985 99999999999998754321
Q ss_pred chhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHHHHHHHHhhhcC
Q 042257 169 KQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAEL---SLTALICFMSSVEGTILTLAIERG 245 (383)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~ 245 (383)
..++........|.++++++++.||+|.++.||...+.+..+ ....+..++..++++|..++....
T Consensus 236 -----------~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~ 304 (416)
T KOG2765|consen 236 -----------QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF 304 (416)
T ss_pred -----------ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 111234556689999999999999999999999887764222 233355556667777777766654
Q ss_pred CCccceeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHH
Q 042257 246 NTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIG 324 (383)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g 324 (383)
..+.+..++..+...++..+++ ++++-++|.+|.-.+++..++..+.++...+++.+.++-+.++++.+++|...|+.|
T Consensus 305 ~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~ 384 (416)
T KOG2765|consen 305 GEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVG 384 (416)
T ss_pred ccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 6667778888888888889999 999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHhhhccCC
Q 042257 325 LYMVLWGRNK 334 (383)
Q Consensus 325 v~l~~~~~~~ 334 (383)
.+..++....
T Consensus 385 Fv~vn~~~~~ 394 (416)
T KOG2765|consen 385 FVIVNISSEN 394 (416)
T ss_pred Hhheeccccc
Confidence 9988876543
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.79 E-value=3.8e-19 Score=161.22 Aligned_cols=286 Identities=12% Similarity=0.109 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042257 19 GVIFMQFCYSIMSVIAKLALN--QGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNL 96 (383)
Q Consensus 19 ~~~~~~~~~~~~~~~~k~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 96 (383)
+.....++-.......|..++ ..--|..++.++..++.+..+........+..+..+...+...+.+|++. +++..+
T Consensus 21 ~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~ 99 (316)
T KOG1441|consen 21 AFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVL 99 (316)
T ss_pred HHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHh
Confidence 333444444445667788775 33458888888777777777766555444433333456677788889887 999999
Q ss_pred HHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcc
Q 042257 97 YYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHN 176 (383)
Q Consensus 97 ~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~ 176 (383)
-..|+.+.+++.++.+..+.|++++++++++.+|+.+... +..++....|+.+...
T Consensus 100 ~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~------------------ 155 (316)
T KOG1441|consen 100 GNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV------------------ 155 (316)
T ss_pred cchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee------------------
Confidence 9999999999999999999999999999999999999998 9999999999988773
Q ss_pred cccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhc--CC-chhHHHHHHHHHHHHHHH-HHHHhhhcCCCcc--c
Q 042257 177 QLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKS--YP-AELSLTALICFMSSVEGT-ILTLAIERGNTGI--W 250 (383)
Q Consensus 177 ~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~--~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~--~ 250 (383)
.....+..|.+.++++.+..+..+++.|+..++ .+ ++++...++...+.+.++ |.....++ +... .
T Consensus 156 -------~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~-~~~~~~~ 227 (316)
T KOG1441|consen 156 -------TELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEG-NKFVGFL 227 (316)
T ss_pred -------ccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcc-cceeeee
Confidence 244566799999999999999999999999853 22 468999999999999888 77665554 2220 0
Q ss_pred eeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhh
Q 042257 251 LLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLW 330 (383)
Q Consensus 251 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~ 330 (383)
...........++..++...-+...+..+.+++|.+.++.+.+.-++.++.|+++|+++.++.+.+|+++.++|+++|.+
T Consensus 228 ~~~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 228 TAPWFVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 00111223444444555666777888899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 042257 331 GRNKDRS 337 (383)
Q Consensus 331 ~~~~~~~ 337 (383)
.|.++++
T Consensus 308 ~k~~~~~ 314 (316)
T KOG1441|consen 308 AKLKEKK 314 (316)
T ss_pred Hhhhhhc
Confidence 8876654
No 21
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.69 E-value=8.5e-14 Score=125.57 Aligned_cols=298 Identities=12% Similarity=0.160 Sum_probs=217.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHhhhcC----CCCC------CCHHHHHH
Q 042257 15 KPYLGVIFMQFCYSIMSVIAKLALNQG---MSPYVLVAYRMVVATILIAPFAFVLERK----TRPK------MTLPIFAK 81 (383)
Q Consensus 15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~~ 81 (383)
.-.+.++...+.++......|+.-..+ +.|...+++--++-.+++....+...+. .... ..+++..+
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 567778888889999999999985344 6688888888888877777766654322 1111 23556677
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcC
Q 042257 82 IALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKG 161 (383)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~ 161 (383)
..+.+++- ++.+-++|.++.+.+++..++..++-.+.|+++.++++++|++++| |.++++.+.|+.++.....
T Consensus 95 ~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 95 VSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCC
Confidence 78888886 8877899999999999999999999999999999999999999999 9999999999999874332
Q ss_pred CcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHHHHHH
Q 042257 162 PILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTAL-ICFMSSVEGTILTL 240 (383)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 240 (383)
+..+ +.+.....+...|....+.++.+-++..++.++.+|+.+.+..+.-. ..++|.+..+...+
T Consensus 168 ~~~~--------------a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~ 233 (345)
T KOG2234|consen 168 SPTG--------------AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTIL 233 (345)
T ss_pred CCCC--------------ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 2110 01023456678999999999999999999999999887644433333 33444444444443
Q ss_pred hhhcCCCccceeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHH
Q 042257 241 AIERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAV 319 (383)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~ 319 (383)
..+. +...|.-.. ..|-...+.-++ .+++-.+...-+|+.+-..=+....+..+++.+.++.+++-+|+....+|..
T Consensus 234 ~~d~-~~i~~~gff-~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~ 311 (345)
T KOG2234|consen 234 LQDG-EAINEYGFF-YGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGAL 311 (345)
T ss_pred hccc-cccccCCcc-ccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 3322 111111100 123333333334 6666667777788888777777778899999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCC
Q 042257 320 IIVIGLYMVLWGRNKD 335 (383)
Q Consensus 320 li~~gv~l~~~~~~~~ 335 (383)
+++.++.++...+.++
T Consensus 312 lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 312 LVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHHhhcCCccc
Confidence 9999999999655554
No 22
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.3e-14 Score=127.38 Aligned_cols=295 Identities=13% Similarity=0.101 Sum_probs=229.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH--HHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 042257 10 LSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVA--YRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSL 87 (383)
Q Consensus 10 ~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 87 (383)
.+....+++..+.-++.=-++.+..|..+...--|..+.. ++.+.+.+.+...-..+ --..++.+++..++.+.+.+
T Consensus 7 ~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~-lv~~~~l~~~~~kk~~P~~~ 85 (314)
T KOG1444|consen 7 SKKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLG-LVNFRPLDLRTAKKWFPVSL 85 (314)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhc-eeecCCcChHHHHHHccHHH
Confidence 3344456777777777777788899988754444555555 88888877776544332 22245677888888888888
Q ss_pred HHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCC
Q 042257 88 FEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFP 167 (383)
Q Consensus 88 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~ 167 (383)
+. .++...-..+++|+++...+++....|+++++....++|.|++... +.++...++|......
T Consensus 86 lf-~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v------~~Sv~~m~~~s~~~~~--------- 149 (314)
T KOG1444|consen 86 LF-VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKV------WASVFAMIIGSVAAAF--------- 149 (314)
T ss_pred HH-HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhH------HHHHHHHHHHHHhhcc---------
Confidence 86 7778888899999999999999999999999999999998888887 9999999888888763
Q ss_pred cchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042257 168 WKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIERGN 246 (383)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 246 (383)
.+...+..|+.+++...++-+.+.+..|+..+..+ .....+++.++.+...+....++++..+
T Consensus 150 ----------------~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~ 213 (314)
T KOG1444|consen 150 ----------------TDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELD 213 (314)
T ss_pred ----------------ccceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchH
Confidence 23344456999999999999999999998776644 3477889999999999888887776422
Q ss_pred Cccce---eccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHH
Q 042257 247 TGIWL---LHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVI 323 (383)
Q Consensus 247 ~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~ 323 (383)
..... ......+..+...+++++.-.++..+..+..+++..++.+..+...+.+...++++++.++...+|..+-++
T Consensus 214 ~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ 293 (314)
T KOG1444|consen 214 ALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFF 293 (314)
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhh
Confidence 00111 122334566666566677778888999999999999999988888888888888888999999999999999
Q ss_pred HHHHhhhccCCCCC
Q 042257 324 GLYMVLWGRNKDRS 337 (383)
Q Consensus 324 gv~l~~~~~~~~~~ 337 (383)
|..++++.+.++++
T Consensus 294 ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 294 GGVLYSYATFRKKK 307 (314)
T ss_pred hhhHHhhhhhhhcc
Confidence 99999987766544
No 23
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.67 E-value=3.4e-16 Score=119.40 Aligned_cols=135 Identities=18% Similarity=0.274 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCCHHHHHHHHHHHHHHHHHH
Q 042257 15 KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRP-KMTLPIFAKIALVSLFEPVIS 93 (383)
Q Consensus 15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~ 93 (383)
...++++++++++|+..++.|... ++.||...++.|.....++++.+....++...+ ..+.|.|..+.+.|+.+ .++
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl-~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-gls 80 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGL-EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLS 80 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHH
Confidence 357899999999999999999996 999999999999999999999888876654322 24678888888888776 999
Q ss_pred HHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHH
Q 042257 94 QNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMT 157 (383)
Q Consensus 94 ~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 157 (383)
+.+||.|++..+++.+.++-.+.|+++++++++++|||++..+ ++|+++..+|++++.
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999999999 999999999988764
No 24
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.63 E-value=1.3e-16 Score=135.82 Aligned_cols=284 Identities=13% Similarity=0.195 Sum_probs=211.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHH
Q 042257 11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQG-MSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFE 89 (383)
Q Consensus 11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 89 (383)
++.+.++.+.-+-.++-......+.....++ ..|...+|+.+..-+++.-++..+|.+ .-...|+..++++++-
T Consensus 14 kk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~-----~~~~~~~hYilla~~D 88 (336)
T KOG2766|consen 14 KKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK-----YIKAKWRHYILLAFVD 88 (336)
T ss_pred hhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH-----HHHHHHHHhhheeEEe
Confidence 3445555555444444444444445443443 458889999999999999998888541 1223455577777776
Q ss_pred HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcc
Q 042257 90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWK 169 (383)
Q Consensus 90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~ 169 (383)
+-++.+...|.||++...++.+-....+.+.+++|++++.|.+..+ +.|+++++.|+++++..+-
T Consensus 89 -VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmk------i~gV~iCi~GvvmvV~sDV-------- 153 (336)
T KOG2766|consen 89 -VEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMK------ISGVVICIVGVVMVVFSDV-------- 153 (336)
T ss_pred -ecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhhe------eeeEEeEecceEEEEEeee--------
Confidence 6678888899999999999999999999999999999999999997 9999999999999885431
Q ss_pred hhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 042257 170 QVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGI 249 (383)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 249 (383)
..++..+..+..+|+.+.++++-+||..++..+.+.|+.+ ....+....++|+++..+- ++.+..+...
T Consensus 154 ---------~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~~~t 222 (336)
T KOG2766|consen 154 ---------HAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFERHHVST 222 (336)
T ss_pred ---------ccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhccceee
Confidence 1122345677789999999999999999999999999987 5889999999999998888 4454322222
Q ss_pred ceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhh
Q 042257 250 WLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVL 329 (383)
Q Consensus 250 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~ 329 (383)
.++.......+...++.++-|-+.-..+|..+++-.+.-..+.-.++++. ..||=+.++...+..+.+..|.+++.
T Consensus 223 --l~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 223 --LHWDSAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred --EeehHHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEee
Confidence 22222222222222224444555556678888888888888999999998 57888899999999999999998883
No 25
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.62 E-value=4.6e-14 Score=118.99 Aligned_cols=263 Identities=11% Similarity=0.083 Sum_probs=200.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHH
Q 042257 44 PYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLM 123 (383)
Q Consensus 44 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll 123 (383)
...++|.++++..++.=++..++++.+.-. .+.+ .+.. ....+.++....+.|+++.|-....+-.+..|+-++++
T Consensus 53 alaLVf~qC~~N~vfAkvl~~ir~~~~~D~--t~~~-~YaA-cs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMil 128 (337)
T KOG1580|consen 53 ALALVFFQCTANTVFAKVLFLIRKKTEIDN--TPTK-MYAA-CSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMIL 128 (337)
T ss_pred HHHHHHHHHHHHHHHHHhheeecccccccC--Ccch-HHHH-HHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeee
Confidence 567788888888877755555543222111 1222 2233 33344677778888999999999888999999999999
Q ss_pred HHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHHHH
Q 042257 124 AWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAW 203 (383)
Q Consensus 124 ~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~ 203 (383)
++++.+.+.+++. ...++++.+|+.+.....+.- ....+.+...|-++.+++-..-
T Consensus 129 GVl~~~KsY~w~k------Y~cVL~IV~GValFmYK~~Kv------------------~g~e~~t~g~GElLL~lSL~mD 184 (337)
T KOG1580|consen 129 GVLFAHKSYHWRK------YCCVLMIVVGVALFMYKENKV------------------GGAEDKTFGFGELLLILSLAMD 184 (337)
T ss_pred ehhhhcccccHHH------HHHHHHHHHHHHHhhcccccc------------------CCCcccccchHHHHHHHHHHhc
Confidence 9999999888886 999999999999988533211 0123445568999999999999
Q ss_pred HHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhc-CCCccceeccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 042257 204 SCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIER-GNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKR 281 (383)
Q Consensus 204 a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~ 281 (383)
++....+.+..+.+. .....+++.++.+.+.+..-.++.+. .+...+....+..|+.+..+++.+.+++++.+.-+..
T Consensus 185 GlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~ 264 (337)
T KOG1580|consen 185 GLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEE 264 (337)
T ss_pred ccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999998888766543 23578888898888877766655432 1222233334567888888899999999999999999
Q ss_pred cCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCC
Q 042257 282 RGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNK 334 (383)
Q Consensus 282 ~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~ 334 (383)
.+|..-+++..++-.++++.++++++.+++.+||+|..+++.+...=....++
T Consensus 265 FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 265 FGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred hCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 99999999999999999999999999999999999999999998765544443
No 26
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.62 E-value=4.9e-14 Score=123.62 Aligned_cols=265 Identities=13% Similarity=0.145 Sum_probs=214.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHH
Q 042257 43 SPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFL 122 (383)
Q Consensus 43 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~l 122 (383)
++..+++.+-+.+.++-..+..+.+.+..++ +.|..+...++.+ .++..|.|.|++|++-..-.+-.+.--+-+++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~---apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml 125 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKELSGV---APLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVML 125 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccCCCC---CchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence 5888999999999888876666654443232 3345566677776 88899999999999998888889999999999
Q ss_pred HHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHHH
Q 042257 123 MAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFA 202 (383)
Q Consensus 123 l~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~ 202 (383)
++.++.|.|.+..+ .+...+.-+|+.+..+.+.+. +..+....+...|+.+....-+.
T Consensus 126 mg~Lvy~~ky~~~e------Yl~~~LIs~GvsiF~l~~~s~----------------s~~~~g~~ns~~G~~Ll~~~L~f 183 (327)
T KOG1581|consen 126 MGTLVYGRKYSSFE------YLVAFLISLGVSIFSLFPNSD----------------SSSKSGRENSPIGILLLFGYLLF 183 (327)
T ss_pred HHHHHhcCccCcHH------HHHHHHHHhheeeEEEecCCC----------------CccccCCCCchHhHHHHHHHHHH
Confidence 99999999999997 888888889998887653211 11134556778999999999999
Q ss_pred HHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhcC--CCccceeccchhHHHHHHHHHHHHHHHHHHHHHH
Q 042257 203 WSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIERG--NTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLM 279 (383)
Q Consensus 203 ~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~ 279 (383)
-++.+..+.++.++.. ++...+++.++.+.+....... ..+. +...+-..++..+..++....++.+++.+.++-+
T Consensus 184 DgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li-~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI 262 (327)
T KOG1581|consen 184 DGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLI-LQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTI 262 (327)
T ss_pred HhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhh-cCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhH
Confidence 9999999999988765 4588899999999888777633 2221 1122333445678888888999999999999999
Q ss_pred hccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCC
Q 042257 280 KRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNK 334 (383)
Q Consensus 280 ~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~ 334 (383)
++.++...+.++.++-.+++.++.+.+|.+.+..||.|..+++.|+.+-.+-+++
T Consensus 263 ~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 263 ERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999887766655
No 27
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.62 E-value=4.3e-14 Score=125.70 Aligned_cols=228 Identities=12% Similarity=0.122 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHH
Q 042257 75 TLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAM 154 (383)
Q Consensus 75 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ 154 (383)
++++..++.+.+++- ++.+.+.|.++++++++..+++.++..+++++++++++|+|++.+| |.++.+.++|+.
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~ 85 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVV 85 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHh
Confidence 457778888888886 9999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHhhcCCcccCCcchhhhhccccccc--CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch-hHHHHHHHHHH
Q 042257 155 CMTLLKGPILKFPWKQVRLLHNQLETG--IQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAE-LSLTALICFMS 231 (383)
Q Consensus 155 li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~ 231 (383)
++...+.+..+. . +.+. .+....+...|++..++++++-++..++.++..|+.+.+ ..........+
T Consensus 86 lv~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~g 155 (244)
T PF04142_consen 86 LVQLSSSQSSDN-------S---SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFG 155 (244)
T ss_pred eeecCCcccccc-------c---cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 987433221000 0 0000 011244567999999999999999999999999997643 34444455555
Q ss_pred HHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccc
Q 042257 232 SVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKL 310 (383)
Q Consensus 232 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~ 310 (383)
.+..++...+.+........... .+-...+.-++ ..++-.+....+|+.+...=+.......+++.++++++++.++
T Consensus 156 i~~~~~~~~~~~~~~~~~~g~f~--G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~ 233 (244)
T PF04142_consen 156 ILFNLLALLLSDGSAISESGFFH--GYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPP 233 (244)
T ss_pred HHHHHHHHhcccccccccCCchh--hcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 55555554433321111111111 12222233334 7777778888999999999999999999999999999999999
Q ss_pred cchhhhhHHHH
Q 042257 311 YLGRIIGAVII 321 (383)
Q Consensus 311 ~~~~~~G~~li 321 (383)
+....+|+.++
T Consensus 234 s~~f~lg~~~V 244 (244)
T PF04142_consen 234 SLSFLLGAALV 244 (244)
T ss_pred chHHhhheecC
Confidence 99999998753
No 28
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.61 E-value=1.4e-14 Score=110.63 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHH
Q 042257 192 GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTA 271 (383)
Q Consensus 192 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 271 (383)
..++++++++++++.-++.|--.++.+ |...+..+.++..+.+..+.+... +.+.-...+++.|..++..|+.++.+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g--~~~~~~~~~~k~~lflilSGla~gls 80 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTG--NWQAGGEIGPKSWLFLILSGLAGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcC--ceecccccCcceehhhhHHHHHHHHH
Confidence 568999999999999999999888876 578889999998888888777554 22222223667899999989779999
Q ss_pred HHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhh
Q 042257 272 YFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVL 329 (383)
Q Consensus 272 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~ 329 (383)
..+|++|++..+++++.++..++|+++++++++++||+++..+++|+++|.+|..+..
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999999999999999999988764
No 29
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.60 E-value=2.4e-13 Score=119.22 Aligned_cols=257 Identities=17% Similarity=0.165 Sum_probs=190.3
Q ss_pred CCCC-hHHHHHHHHHHHHHHHHHHHHhhhcCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhhHHHhhh
Q 042257 40 QGMS-PYVLVAYRMVVATILIAPFAFVLERKT---RPKMTLPIFA-KIALVSLFEPVISQNLYYTGMKYTTATFTVAMCN 114 (383)
Q Consensus 40 ~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~ 114 (383)
++++ |...+.++.++-.++....-...++.. +...+|++.. ++...++.+ +....+.+++++|++.+..++..+
T Consensus 40 ~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KS 118 (349)
T KOG1443|consen 40 KNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKS 118 (349)
T ss_pred cCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeeccc
Confidence 3444 788888888777666654444433322 2245665544 445566665 888899999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHH
Q 042257 115 ILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGAL 194 (383)
Q Consensus 115 ~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 194 (383)
..++|+.+++.++.-||+++.- ..-+++...|++++++. ..+.+..|..
T Consensus 119 Ssi~FIllFs~if~lEk~~w~L------~l~v~lI~~Glflft~K-------------------------sTqf~i~Gf~ 167 (349)
T KOG1443|consen 119 SSILFILLFSLIFKLEKFRWAL------VLIVLLIAVGLFLFTYK-------------------------STQFNIEGFF 167 (349)
T ss_pred cHHHHHHHHHHHHHhHHHHHHH------HHHHHHHhhheeEEEec-------------------------ccceeehhHH
Confidence 9999999999999999999885 66666666677766631 2335678999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC----chhHHHHHHHHHHHHHHHHHHHhhhcCCCc----cceeccch-hHHHHHHHH
Q 042257 195 LIAAGCFAWSCFIILQAFLLKSYP----AELSLTALICFMSSVEGTILTLAIERGNTG----IWLLHFDA-KLLAVIYGG 265 (383)
Q Consensus 195 ~~l~a~~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~g 265 (383)
+..+++++-++.-.+.+..+++.+ +|...++.......+.++|..+..|+.... .|...++. .+..+..++
T Consensus 168 lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~ 247 (349)
T KOG1443|consen 168 LVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLIS 247 (349)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHH
Confidence 999999999999888888888765 467777777777888888888888762222 12222221 222222222
Q ss_pred HH---HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257 266 FV---SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV 328 (383)
Q Consensus 266 ~~---~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~ 328 (383)
+. .++--++-+....+++..+.++.+...-+.+.+++.++.++.++...|+|..+...|+..+
T Consensus 248 l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 248 LGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 22 4444444566688899999999999999999999999999999999999999999999988
No 30
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.52 E-value=6.8e-14 Score=111.94 Aligned_cols=125 Identities=22% Similarity=0.470 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 042257 25 FCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYT 104 (383)
Q Consensus 25 ~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 104 (383)
++||...++.|... ++.||...+++|+..+.+ ++++....+++.....+.+++......++++...++.+++++++++
T Consensus 1 ~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLL-KKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHh-ccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 47999999999985 779999999999999998 6666666555444566778888888889887799999999999999
Q ss_pred chhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHH
Q 042257 105 TATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMT 157 (383)
Q Consensus 105 ~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 157 (383)
+++.++++.++.|+++.+++++++||+++.++ ++|+++++.|++++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~------~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQ------IIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 999999999999875
No 31
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.5e-14 Score=124.55 Aligned_cols=279 Identities=12% Similarity=0.089 Sum_probs=206.0
Q ss_pred HHHHHHHhC----CCChHHHHHHHHHHHHHHHHHHHHhhhcCC----CC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042257 32 VIAKLALNQ----GMSPYVLVAYRMVVATILIAPFAFVLERKT----RP--KMTLPIFAKIALVSLFEPVISQNLYYTGM 101 (383)
Q Consensus 32 ~~~k~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~al 101 (383)
+..|+.++. --.|...++.+++....+...+.....+-+ .+ +++.+..+...-+.++. .++..+-.+++
T Consensus 45 f~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL 123 (347)
T KOG1442|consen 45 FLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCL 123 (347)
T ss_pred hhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceeh
Confidence 345665522 124899999999999888877665433211 11 24444455555555554 55566667899
Q ss_pred cccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhccccccc
Q 042257 102 KYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETG 181 (383)
Q Consensus 102 ~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (383)
+|.+++...+-.++..+|+++++++++|+|-+..- ..+..+.++|..+=...+|
T Consensus 124 ~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~lGvdqE~-------------------- 177 (347)
T KOG1442|consen 124 KYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGLGVDQEG-------------------- 177 (347)
T ss_pred hhcceEEEEeccchhhhHHHHhHHhhccccccccc------ceeehhheehheecccccc--------------------
Confidence 99999999999999999999999999999999886 6777777666655432111
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHhhhc-CCCccceec-cchhH
Q 042257 182 IQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAE-LSLTALICFMSSVEGTILTLAIER-GNTGIWLLH-FDAKL 258 (383)
Q Consensus 182 ~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~-~~~~~ 258 (383)
..+.....|.++++.|+++-|+..++.|+.....++. +..+++.++.+.++++|...+.+. +....+... ....|
T Consensus 178 --~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw 255 (347)
T KOG1442|consen 178 --STGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFW 255 (347)
T ss_pred --ccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHH
Confidence 2344556899999999999999999999877766643 678889999999999988876542 011122222 23455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCCCCC
Q 042257 259 LAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKDRSP 338 (383)
Q Consensus 259 ~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~~~~ 338 (383)
..+...|++++.-.+.-.+-+|-++|.+.++-...+-....+++..+++|.-+...|-|-.+++.|..++.+.|.++.++
T Consensus 256 ~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 256 ILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred HHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 66666566655555566677999999999999999999999999999999999999999999999999999988765544
Q ss_pred C
Q 042257 339 S 339 (383)
Q Consensus 339 ~ 339 (383)
+
T Consensus 336 ~ 336 (347)
T KOG1442|consen 336 A 336 (347)
T ss_pred h
Confidence 3
No 32
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.47 E-value=7.7e-13 Score=110.80 Aligned_cols=282 Identities=15% Similarity=0.163 Sum_probs=207.2
Q ss_pred HHHHHHHHHh-CCCC-hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 042257 30 MSVIAKLALN-QGMS-PYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTAT 107 (383)
Q Consensus 30 ~~~~~k~~~~-~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~ 107 (383)
+.+-.|+.++ .+++ .+.+.+.+.+.+.+-+..+-+.+--+.| ..+.+.| +..+++. ......--.+++|.+..
T Consensus 21 mTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR-~t~aK~W---fpiSfLL-v~MIyt~SKsLqyL~vp 95 (309)
T COG5070 21 MTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR-LTKAKKW---FPISFLL-VVMIYTSSKSLQYLAVP 95 (309)
T ss_pred HHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee-hhhhhhh---cCHHHHH-HHHHHhcccceeeeeee
Confidence 4555666642 2222 4566777877777766655444322222 2222333 3344443 44455556899999999
Q ss_pred hHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCcc
Q 042257 108 FTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEE 187 (383)
Q Consensus 108 ~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (383)
..+++.+++.+.++.....++|.|++..+ ..+.++.++.-+...+.+.+.. .....
T Consensus 96 iYTiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va~w~D~q~~------------------~~~~~ 151 (309)
T COG5070 96 IYTIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVATWGDQQAS------------------AFKAQ 151 (309)
T ss_pred HHHHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHhccchhhHH------------------HHHhc
Confidence 99999999999999999999999999998 9998888888887775442110 11234
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhcCCCcccee-ccchhHHHHHHHH
Q 042257 188 DLTKGALLIAAGCFAWSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIERGNTGIWLL-HFDAKLLAVIYGG 265 (383)
Q Consensus 188 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g 265 (383)
..+.|++++...++.-+.+....|+..+-.. .....++|.++.+..+++.+.++.|+.+...... .+.....+++..|
T Consensus 152 ~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISg 231 (309)
T COG5070 152 ILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISG 231 (309)
T ss_pred ccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHH
Confidence 5568999999999999999999887665433 2378899999999999999999888533332211 1222355677778
Q ss_pred HHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCCCCCCC
Q 042257 266 FVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKDRSPSK 340 (383)
Q Consensus 266 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~~~~~~ 340 (383)
++++.-.+|-.|..+-++.+..++.+.++-.-..+.|.++++|+.+...+..+.+-.++..++...++++++.++
T Consensus 232 l~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~ 306 (309)
T COG5070 232 LCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQK 306 (309)
T ss_pred HHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 886666779999999999999999999999999999999999999999999999988888888877765444443
No 33
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.45 E-value=5.8e-12 Score=109.16 Aligned_cols=280 Identities=18% Similarity=0.178 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHH---hCCC----ChHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-----------C--CHHHHHHHHHHH
Q 042257 27 YSIMSVIAKLAL---NQGM----SPYVLVAYRMVVATILIAPFAFVLERKTRPK-----------M--TLPIFAKIALVS 86 (383)
Q Consensus 27 ~~~~~~~~k~~~---~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~g 86 (383)
=+.+.+++|.+- .++. +|+..+..-++.-+++++.+...+.|...+. . +.+. ...+...
T Consensus 15 Gs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pa 93 (372)
T KOG3912|consen 15 GSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPA 93 (372)
T ss_pred ccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChH
Confidence 355777888762 1222 4777777778877788887777765432111 0 1111 1233355
Q ss_pred HHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccC
Q 042257 87 LFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKF 166 (383)
Q Consensus 87 ~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~ 166 (383)
++- ..+..+.|.++.+++++..+++.....+|+.+++.-+++++++.++ |+|+....+|++++-..+-..
T Consensus 94 l~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~q------Wl~i~fv~lGlviVg~~d~~~--- 163 (372)
T KOG3912|consen 94 LCD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQ------WLGILFVSLGLVIVGSLDVHL--- 163 (372)
T ss_pred HHH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhh------HHHHHHHHhhhheeeeeeccc---
Confidence 555 7778889999999999999999999999999999999999999998 999999999999886432110
Q ss_pred CcchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhcC
Q 042257 167 PWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIERG 245 (383)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~ 245 (383)
...+..+-.+...|+++.+++-+.-|+.+++-+|..++.+ +|.....|..++|.+++..++.....-
T Consensus 164 ------------~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi 231 (372)
T KOG3912|consen 164 ------------VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYI 231 (372)
T ss_pred ------------ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhhe
Confidence 0111133455678999999999999999999999888866 578999999999977665555433210
Q ss_pred CCc-ccee---------------ccchhHHHHHHHHHHHHHHH--HHHHHHHhccCccceeecchhHHHHHHHHHHHHhc
Q 042257 246 NTG-IWLL---------------HFDAKLLAVIYGGFVSCTAY--FIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLA 307 (383)
Q Consensus 246 ~~~-~~~~---------------~~~~~~~~~~~~g~~~~~~~--~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~ 307 (383)
+.. .++. ........+...|...-+++ +.=.+-.|..++++-..+..++..+--+++.....
T Consensus 232 ~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~ 311 (372)
T KOG3912|consen 232 PSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGW 311 (372)
T ss_pred ecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHH
Confidence 000 1100 00111222333333311111 12223356678888899999999999999999999
Q ss_pred ccccchhhhhHHHHHHHHHHhh
Q 042257 308 EKLYLGRIIGAVIIVIGLYMVL 329 (383)
Q Consensus 308 e~~~~~~~~G~~li~~gv~l~~ 329 (383)
|.++..|+.|.++.+.|+.++.
T Consensus 312 E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 312 EYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887
No 34
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.39 E-value=1.7e-12 Score=103.81 Aligned_cols=124 Identities=27% Similarity=0.453 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH-HHHHHHHHHHHH
Q 042257 201 FAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLM 279 (383)
Q Consensus 201 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~ 279 (383)
++||.+.+..|+..++.+ +....+++...+.+ ..+...+.+. .. ....+...+...++.+++ +.+++.++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGR-KP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcc-cc--ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence 468899999999999876 68999999999988 6666655543 21 233345577888888888 899999999999
Q ss_pred hccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhh
Q 042257 280 KRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVL 329 (383)
Q Consensus 280 ~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~ 329 (383)
++.+++.++++.+++|+++.++++++++|+++..+++|+++++.|+++..
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764
No 35
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.36 E-value=3.4e-10 Score=100.40 Aligned_cols=252 Identities=16% Similarity=0.162 Sum_probs=176.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhh-hhhHH
Q 042257 42 MSPYVLVAYRMVVATILIAPFAFVLERKTRPKMT--LPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMC-NILPA 118 (383)
Q Consensus 42 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi 118 (383)
-+|....+.-.+.+.++-+....+. + +..+ .+.+...++.|++- .+++...+.|+++.+.+.+.++. .+.-+
T Consensus 10 G~~~~Q~lG~t~Gali~alv~~~~~-~---p~~~~~~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLv 84 (269)
T PF06800_consen 10 GKPANQILGTTIGALIFALVVFLFR-Q---PAFSMSGTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLV 84 (269)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh-C---CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHH
Confidence 4466666665566666655555442 2 2333 36677777777776 99999999999999999999997 77888
Q ss_pred HHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHH
Q 042257 119 LTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAA 198 (383)
Q Consensus 119 ~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~ 198 (383)
.+.+++.++++|--+..++ ..=.+++++.++|+.+-...+++. ...+...+...|+...++
T Consensus 85 g~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lts~~~~~~-----------------~~~~~~~~~~kgi~~Ll~ 145 (269)
T PF06800_consen 85 GTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILTSYQDKKS-----------------DKSSSKSNMKKGILALLI 145 (269)
T ss_pred HHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHhccccccc-----------------cccccccchhhHHHHHHH
Confidence 8999999999998887760 001236777888888776543321 001124556789999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHHHHHHHHH
Q 042257 199 GCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWL 278 (383)
Q Consensus 199 a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a 278 (383)
+.+.|..|.+..|.. +.+ +.....-+.+.-.+....+..+... .. .....|.. +..|++-.++++++..+
T Consensus 146 stigy~~Y~~~~~~~--~~~-~~~~~lPqaiGm~i~a~i~~~~~~~----~~--~~k~~~~n-il~G~~w~ignl~~~is 215 (269)
T PF06800_consen 146 STIGYWIYSVIPKAF--HVS-GWSAFLPQAIGMLIGAFIFNLFSKK----PF--FEKKSWKN-ILTGLIWGIGNLFYLIS 215 (269)
T ss_pred HHHHHHHHHHHHHhc--CCC-hhHhHHHHHHHHHHHHHHHhhcccc----cc--cccchHHh-hHHHHHHHHHHHHHHHh
Confidence 999999999987663 333 4555555544444433333332211 11 11123333 44577788889999999
Q ss_pred HhccCccceeecchhHHHHHHHHHHHHhcccccch----hhhhHHHHHHHHHH
Q 042257 279 MKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLG----RIIGAVIIVIGLYM 327 (383)
Q Consensus 279 ~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~----~~~G~~li~~gv~l 327 (383)
.++.+.+..=.+..+.++++.+.+.++++|+=+.. .++|+++++.|..+
T Consensus 216 ~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 216 AQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999997755 45688888877654
No 36
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2.2e-11 Score=105.47 Aligned_cols=276 Identities=11% Similarity=0.060 Sum_probs=189.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchhhHHHhhhhhHHHH
Q 042257 42 MSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKY-TTATFTVAMCNILPALT 120 (383)
Q Consensus 42 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~-~~~~~a~~l~~~~pi~~ 120 (383)
-+-..++|.++++-+.--+++.--.. ..+++.+.+++...+.. ....+.+.++++++ ++...-.++.+-.++.+
T Consensus 31 gsgNLITFaqFlFia~eGlif~skf~-~~k~kiplk~Y~i~V~m----FF~vnv~NN~al~f~I~~PlHiIfRsgsll~n 105 (330)
T KOG1583|consen 31 GSGNLITFAQFLFIATEGLIFTSKFF-TVKPKIPLKDYAITVAM----FFIVNVTNNYALKFNIPMPLHIIFRSGSLLAN 105 (330)
T ss_pred CCeeehHHHHHHHHHHhceeeecccc-ccCCCCchhhhheehhe----eeeeeeeccceeeecccceEEEEEecCcHHHH
Confidence 34467788888776665554331111 11355666665443322 25567788889987 67777788889999999
Q ss_pred HHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHH
Q 042257 121 FLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGC 200 (383)
Q Consensus 121 ~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~ 200 (383)
++++++++|+|.+.+| ..++++..+|+++-++.+.+.... +.+.. ++++.......+..|+.+..++-
T Consensus 106 M~~g~il~~k~Ys~~Q------y~Sv~~iTiGiiIcTl~s~~d~~~--~~~~l----~~~~~~~~~~~w~iGi~lL~~al 173 (330)
T KOG1583|consen 106 MILGWILLGKRYSLRQ------YSSVLMITIGIIICTLFSSKDGRS--KLSGL----DSGSAQSDFFWWLIGIALLVFAL 173 (330)
T ss_pred HHHHHHhccceeehhh------hhhHHhhhhhheeEEeecCcchhh--hhccc----ccCcccccchHHHHHHHHHHHHH
Confidence 9999999999999998 999999999999987654322111 00111 12222345556678999999999
Q ss_pred HHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhc-----CCCc-----cceeccchhHHHHHHHHHHHH
Q 042257 201 FAWSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIER-----GNTG-----IWLLHFDAKLLAVIYGGFVSC 269 (383)
Q Consensus 201 ~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~g~~~~ 269 (383)
+.-|.-.++++...++++ ++.+.++|.-..+....+...-=..+ ...+ .....-+..|..++...+.+.
T Consensus 174 ~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy 253 (330)
T KOG1583|consen 174 LLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQY 253 (330)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHH
Confidence 999999999998888876 46788888888776665543310000 0011 111112335666655433344
Q ss_pred HHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCC
Q 042257 270 TAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNK 334 (383)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~ 334 (383)
.+---.+..-.+.++.++++...++-.+++++|.+.|+.+++++-|+|.+++++|.+++.-...+
T Consensus 254 ~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~ 318 (330)
T KOG1583|consen 254 FCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNH 318 (330)
T ss_pred HHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44444445556677889999999999999999999999999999999999999999888754443
No 37
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.30 E-value=7.8e-11 Score=106.79 Aligned_cols=134 Identities=14% Similarity=0.285 Sum_probs=114.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHH
Q 042257 11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSP--YVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLF 88 (383)
Q Consensus 11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 88 (383)
+....|.+++++++++|+...+..|... ++.++ .....+++.++.++++++....++. ...+.+++...+..+++
T Consensus 124 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 200 (260)
T TIGR00950 124 SINPAGLLLGLGSGISFALGTVLYKRLV-KKEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLI 200 (260)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHh-hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHH
Confidence 3456799999999999999999999984 55664 4555578999999988887764332 23356777778888988
Q ss_pred HHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHH
Q 042257 89 EPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGA 153 (383)
Q Consensus 89 ~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv 153 (383)
+...++.++++++++.+++.++++.++.|++++++++++++|+++..+ ++|+.+.+.|+
T Consensus 201 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~------~~G~~li~~g~ 259 (260)
T TIGR00950 201 GTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQ------LIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHhc
Confidence 878999999999999999999999999999999999999999999998 99999999886
No 38
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.25 E-value=6e-10 Score=102.14 Aligned_cols=280 Identities=12% Similarity=0.134 Sum_probs=158.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Q 042257 11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEP 90 (383)
Q Consensus 11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 90 (383)
.+...|++++++++++-+....+.|....+ .+.... | .+++.++..+ ...+..|.+..
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~~~~---~--------------~~~~~~~~l~----~~~W~~G~~~~ 60 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPRGSL---R--------------AGSGGRSYLR----RPLWWIGLLLM 60 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccc---c--------------ccchhhHHHh----hHHHHHHHHHH
Confidence 345679999999999999999999988421 111000 0 0000001111 12344566666
Q ss_pred HHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcch
Q 042257 91 VISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQ 170 (383)
Q Consensus 91 ~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~ 170 (383)
.++..+.+.|+.+.|.+..+++..+.-++.++++.+++|||++.++ +.|+.+++.|..++.... |..+-..+.
T Consensus 61 ~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~~-~~~~~~~t~ 133 (300)
T PF05653_consen 61 VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIFA-PKEEPIHTL 133 (300)
T ss_pred hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEeC-CCCCCcCCH
Confidence 7788899999999999999999999999999999999999999999 999999999998876443 221111111
Q ss_pred hhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH---HHHh-hhc-C
Q 042257 171 VRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTI---LTLA-IER-G 245 (383)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~-~~~-~ 245 (383)
++..+ .-.+.....+...... ++..+.....+|..++ +.........+.+...... +... ... .
T Consensus 134 ~~l~~--------~~~~~~fl~y~~~~~~-~~~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~ 202 (300)
T PF05653_consen 134 DELIA--------LLSQPGFLVYFILVLV-LILILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISILIKLTFS 202 (300)
T ss_pred HHHHH--------HhcCcceehhHHHHHH-HHHHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHHHHHHhc
Confidence 11100 0011111111111111 1222222222222111 1110111111111111110 1100 110 0
Q ss_pred CCccceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchh-HHHHHHHHHHHHhcccc--cc----hhhhhH
Q 042257 246 NTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPL-GMVIIAVLGSFFLAEKL--YL----GRIIGA 318 (383)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~-~pv~~~l~~~~~~~e~~--~~----~~~~G~ 318 (383)
+...+ ..+..|..++.+...........++++++.+++.+.++.+. -...+++-|.++++|.. +. ...+|+
T Consensus 203 g~~~f--~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~ 280 (300)
T PF05653_consen 203 GDNQF--TYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGF 280 (300)
T ss_pred Cchhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 11122 22234444444333366677778999999999999888874 55666777888888863 44 356788
Q ss_pred HHHHHHHHHhhhcc
Q 042257 319 VIIVIGLYMVLWGR 332 (383)
Q Consensus 319 ~li~~gv~l~~~~~ 332 (383)
.+++.|+++....+
T Consensus 281 ~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 281 LIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHhhheeeccC
Confidence 88899988875433
No 39
>PRK13499 rhamnose-proton symporter; Provisional
Probab=99.24 E-value=1.5e-08 Score=93.66 Aligned_cols=299 Identities=12% Similarity=0.016 Sum_probs=182.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH-----hhhcC---CCCCCCHHHHHHHH
Q 042257 12 HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAF-----VLERK---TRPKMTLPIFAKIA 83 (383)
Q Consensus 12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~ 83 (383)
+...|++..+++.++||...+-.|.. ++.+--.+ .. +... +.+.+.- +..+. .....+.+.+...+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~--k~w~wE~~-W~--v~gi-~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~ 77 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKV--KKWSWETM-WS--VGGI-FSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF 77 (345)
T ss_pred hhHHHHHHHHHHHHHhhccccccccc--CCCchhHH-HH--HHHH-HHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence 46679999999999999999999995 55552222 11 1111 1111111 11111 11224566777777
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhccc---ccccccccchhhHHHHHHHHHHHHHhh
Q 042257 84 LVSLFEPVISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKV---KIKSTHSQAKILGTIVTAGGAMCMTLL 159 (383)
Q Consensus 84 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~---~~~~~~~~~~~~gi~l~~~Gv~li~~~ 159 (383)
+.|++- ..++..++.++++.+.+.+.++. .+.-++..++..++++|=. +..+ .+.-.+|+++.++|+++....
T Consensus 78 l~G~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 78 LFGALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHh
Confidence 777776 99999999999999999998886 8889999999999998754 2211 122478889999999988752
Q ss_pred cCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHH-------HHHHHHhhcCCchhHHHHHHH----
Q 042257 160 KGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFI-------ILQAFLLKSYPAELSLTALIC---- 228 (383)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~-------v~~k~~~~~~~~~~~~~~~~~---- 228 (383)
...... . ++.++....+..+|+.+++++.+.+++|. ...+.......++.....-+.
T Consensus 155 g~~k~~-----------~-~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~ 222 (345)
T PRK13499 155 GQLKER-----------K-MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIM 222 (345)
T ss_pred hhhccc-----------c-cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHH
Confidence 211000 0 00000234567899999999999999999 433332111112222222222
Q ss_pred HHHHHHHHHHHHhhh-c-CCCccceec--c----chhHHHHHHHHHHHHHHHHHHHHHHhccCccceee----cchhHHH
Q 042257 229 FMSSVEGTILTLAIE-R-GNTGIWLLH--F----DAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSS----FNPLGMV 296 (383)
Q Consensus 229 ~~~~i~~~~~~~~~~-~-~~~~~~~~~--~----~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~----~~~~~pv 296 (383)
+.+.+.......+.. + .+...+... + ......-+..|+.=.++++++..+-.+.+...... .+.+..+
T Consensus 223 ~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Vi 302 (345)
T PRK13499 223 GGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVL 302 (345)
T ss_pred HHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHH
Confidence 222323332223211 1 011111111 1 11222224456667777888888888776543333 3378889
Q ss_pred HHHHHHHHHhccccc------chhhhhHHHHHHHHHHhhhcc
Q 042257 297 IIAVLGSFFLAEKLY------LGRIIGAVIIVIGLYMVLWGR 332 (383)
Q Consensus 297 ~~~l~~~~~~~e~~~------~~~~~G~~li~~gv~l~~~~~ 332 (383)
++.+.+. +++|.=+ ..-++|++++++|..+...++
T Consensus 303 istlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~~ 343 (345)
T PRK13499 303 CGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLGN 343 (345)
T ss_pred HHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 9999999 5999866 557999999999998887654
No 40
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.24 E-value=1.2e-10 Score=96.76 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-----C-chhHHHHHHHHHHHHHHHHHHHhhhcCCCcccee-------c-cchh
Q 042257 192 GALLIAAGCFAWSCFIILQAFLLKSY-----P-AELSLTALICFMSSVEGTILTLAIERGNTGIWLL-------H-FDAK 257 (383)
Q Consensus 192 G~~~~l~a~~~~a~~~v~~k~~~~~~-----~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~-~~~~ 257 (383)
|.++++.|.++.+++.++.|+..++. . ++.....+....+.+.+.+..++.|......... . +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67899999999999999999988883 2 5789999999999999999998887522111110 0 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhh
Q 042257 258 LLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLW 330 (383)
Q Consensus 258 ~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~ 330 (383)
+..++..|++..+.+...+..+++++|...+++..++.+...++++++++|+++..++.|+++.+.|+++++|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 5666666666888899999999999999999999999999999999999999999999999999999998764
No 41
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.22 E-value=4.5e-11 Score=93.80 Aligned_cols=105 Identities=15% Similarity=0.331 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHH
Q 042257 49 AYRMVVATILIAPFAFVLERKT--RPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWI 126 (383)
Q Consensus 49 ~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~ 126 (383)
.+|+..+.+++..+...+++.. .+..+++.+.++...|.++...++.++++|+++.| +.++++.++.|+++++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 5789999999988887754421 12233455566777788886689999999999999 58889999999999999999
Q ss_pred HhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257 127 FRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK 160 (383)
Q Consensus 127 ~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~ 160 (383)
++|||+++++ +.+++++++|++++...+
T Consensus 81 ~~~er~~~~~------~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 81 FFKERLSPRR------WLAILLILIGVILIAWSD 108 (113)
T ss_pred HhcCCCCHHH------HHHHHHHHHHHHHHhhhh
Confidence 9999999998 999999999999998643
No 42
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.22 E-value=4.1e-11 Score=98.66 Aligned_cols=211 Identities=16% Similarity=0.153 Sum_probs=160.5
Q ss_pred HHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcch
Q 042257 91 VISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQ 170 (383)
Q Consensus 91 ~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~ 170 (383)
.+.++.|..|++.++++.++.+......|+.+++++++|+|+.... +++.++++.|++++...+
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~k------IlaailAI~GiVmiay~D---------- 127 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFK------ILAAILAIGGIVMIAYAD---------- 127 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhh------HHHHHHHhCcEEEEEecc----------
Confidence 6788999999999999999999999999999999999999999987 999999999999887433
Q ss_pred hhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch-----hHHHHHHHHHHHHHHHHHHHhhhcC
Q 042257 171 VRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAE-----LSLTALICFMSSVEGTILTLAIERG 245 (383)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~ 245 (383)
........|+.+++.++...|+|-++.|+...+.+-. ++...+.++. +.....++..-.
T Consensus 128 -------------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~---~~~~~~lIL~~T 191 (290)
T KOG4314|consen 128 -------------NEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLC---FISFPALILAFT 191 (290)
T ss_pred -------------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH---HHhhhHHHHHHh
Confidence 2334557899999999999999999999988775411 2222222221 111111111111
Q ss_pred CCccceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHH
Q 042257 246 NTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGL 325 (383)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv 325 (383)
..+.|.......|..+...+.++..-+++.+.++..+.|...++-+..........+.++-+-..+...+.|..+|++|.
T Consensus 192 ~VE~~qsFA~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~F 271 (290)
T KOG4314|consen 192 GVEHLQSFAAAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGF 271 (290)
T ss_pred chHHHHHHhhCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444433334577777666666666778888999999999999999999999999986555568899999999999999
Q ss_pred HHhhhccC
Q 042257 326 YMVLWGRN 333 (383)
Q Consensus 326 ~l~~~~~~ 333 (383)
.+......
T Consensus 272 iLiiiP~d 279 (290)
T KOG4314|consen 272 ILIIIPED 279 (290)
T ss_pred Hheecccc
Confidence 88776443
No 43
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.19 E-value=8.8e-10 Score=101.62 Aligned_cols=139 Identities=14% Similarity=0.119 Sum_probs=116.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 042257 12 HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPV 91 (383)
Q Consensus 12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 91 (383)
....|.++.++++++|+...+..|.. .. .++....++++.++.+.+.++............+.+.|......++++..
T Consensus 147 ~~~~G~l~~l~a~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~ 224 (292)
T PRK11272 147 GNPWGAILILIASASWAFGSVWSSRL-PL-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSI 224 (292)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc-CC-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHH
Confidence 34579999999999999999999987 23 34566778888888888877765433221122356778888888998888
Q ss_pred HHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 92 ISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 92 ~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
+++.++++++++.+++.++++..+.|++++++++++++|+++..+ ++|.++.+.|+++...
T Consensus 225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~------iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIE------WLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 9999999999999864
No 44
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.19 E-value=8.1e-10 Score=95.55 Aligned_cols=271 Identities=11% Similarity=0.126 Sum_probs=200.1
Q ss_pred HHHHHHHHHH-hCCCC--hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 042257 29 IMSVIAKLAL-NQGMS--PYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTT 105 (383)
Q Consensus 29 ~~~~~~k~~~-~~~~~--~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~ 105 (383)
....+-.+.+ .+++. .+.+++.+++.-..+.+.-.... +.+++..++| -...++.+. .+...+..-++.|++
T Consensus 57 ~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~r---tY~~la~~t-~gtmGLsn~SlgYLN 131 (367)
T KOG1582|consen 57 VYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWR---TYVILAFLT-VGTMGLSNGSLGYLN 131 (367)
T ss_pred HHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-cccceecchh---HhhhhHhhh-hhccccCcCcccccc
Confidence 3444444444 24555 35667777766544444322221 2222334444 345556665 677778888999998
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCC
Q 042257 106 ATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNN 185 (383)
Q Consensus 106 ~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (383)
-..-.++.++.-+-+++.+.++-+.|.++.+ .++..+..+|.++.++.+.. ..
T Consensus 132 YPtQviFKccKliPVmiggifIqGkRY~v~d------~~aA~lm~lGli~FTLADs~---------------------~s 184 (367)
T KOG1582|consen 132 YPTQVIFKCCKLIPVMIGGIFIQGKRYGVHD------YIAAMLMSLGLIWFTLADSQ---------------------TS 184 (367)
T ss_pred CcHHHHHHhhhhhhhhheeeeeccccccHHH------HHHHHHHHHHHHhhhhcccc---------------------cC
Confidence 8777788899989999999999999999998 99999999999999876532 34
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHHHHHhhhcCCCcccee---ccchhHHHH
Q 042257 186 EEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPA-ELSLTALICFMSSVEGTILTLAIERGNTGIWLL---HFDAKLLAV 261 (383)
Q Consensus 186 ~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 261 (383)
...+..|+.+.-.|-++-|+-.-++++..+..+. .....++...+|.+.++......+. -...|.. ++.......
T Consensus 185 PNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge-~f~a~~fcaehp~~tyGy~ 263 (367)
T KOG1582|consen 185 PNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGE-LFSAWTFCAEHPVRTYGYA 263 (367)
T ss_pred CCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhccc-chhhhHHHHhCcHhHHHHH
Confidence 4556789999999999998887788888887663 3566777788888877777765543 3333332 222345566
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257 262 IYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR 332 (383)
Q Consensus 262 ~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~ 332 (383)
++.++.+.++.......++..++..++.++..+-.+++++|+++|..+++....-|..+|+.|+++-.+.+
T Consensus 264 ~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 264 FLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 66666678888888888999999999999999999999999999999999999999999999999887766
No 45
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.16 E-value=1.4e-09 Score=100.38 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=113.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 042257 13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVI 92 (383)
Q Consensus 13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 92 (383)
...|.++.++++++|+...+..|.. .++.++.... +...++.+++.++...... ....+...+...+..|+++..+
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~-~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRA-GAEHGPATVA-IGSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH-hccCCchHHH-HHHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999988 4667777764 4456666666666655322 1223455566667889998899
Q ss_pred HHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257 93 SQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK 160 (383)
Q Consensus 93 ~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~ 160 (383)
++.++++++++.+++.++++..+.|+++.++++++++|+++..+ ++|..+.++|++......
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~------~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQ------WLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999 999999999999987543
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.10 E-value=4.2e-09 Score=99.18 Aligned_cols=138 Identities=9% Similarity=0.127 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHhhhcCCC----CCCCHHHHHHHHHHHHH
Q 042257 14 AKPYLGVIFMQFCYSIMSVIAKLALNQGMSP-YVLVAYRMVVATILIAPFAFVLERKTR----PKMTLPIFAKIALVSLF 88 (383)
Q Consensus 14 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~ 88 (383)
..|.+++++++++|+...++.|... +..++ ...+++.+.++.+.+.+......+... ...+... ...+..++.
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~ 265 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIM-SEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAII 265 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHH-HHHHHHHHH
Confidence 4588999999999999999999874 45544 466677777776666555544332211 1122222 224445555
Q ss_pred HHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257 89 EPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK 160 (383)
Q Consensus 89 ~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~ 160 (383)
. .+++.++++++++.+++.++++.++.|++++++++++++|+++..+ ++|.++.+.|+.++...+
T Consensus 266 t-~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~------~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 266 T-SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGC------LIGGILITLGFYAVMWGK 330 (358)
T ss_pred H-HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhhh
Confidence 4 6789999999999999999999999999999999999999999999 999999999999988644
No 47
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.09 E-value=2.4e-09 Score=98.16 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHHH
Q 042257 193 ALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAY 272 (383)
Q Consensus 193 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 272 (383)
..+.+++++++|...++.|+..++.+ + ...+....+.+...+...... ....+...+...+..++..++.....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYL--AQVGWSRLPATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhc--ccCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 46889999999999999998777643 2 345555666666666654321 122333323334444444444488889
Q ss_pred HHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhc
Q 042257 273 FIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWG 331 (383)
Q Consensus 273 ~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~ 331 (383)
.++++++++.+++.++++.++.|+++.++++++++|+++..+++|.++++.|+.+....
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999887643
No 48
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.07 E-value=2.4e-09 Score=98.92 Aligned_cols=138 Identities=16% Similarity=0.217 Sum_probs=109.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccce--eccchhHHHHHHHH
Q 042257 188 DLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWL--LHFDAKLLAVIYGG 265 (383)
Q Consensus 188 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g 265 (383)
+..+|++++++++++|+...+..|.. .+.+ |....+++...+.+...+...... +..... ..+...+... ..+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~ 79 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICR--QWSYLKTLIQTPQKIFML-AVS 79 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHcCHHHHHHH-HHH
Confidence 45689999999999999999999764 4555 789999999999887776654322 111110 0112233333 345
Q ss_pred HH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhh
Q 042257 266 FV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLW 330 (383)
Q Consensus 266 ~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~ 330 (383)
.+ .+..+.++++++++.+++.++.+.++.|+++.++++++++|+++..+++|+++.++|+.+...
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 55 888899999999999999999999999999999999999999999999999999999987753
No 49
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.06 E-value=5.6e-09 Score=96.43 Aligned_cols=134 Identities=13% Similarity=0.162 Sum_probs=105.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 042257 13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVI 92 (383)
Q Consensus 13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 92 (383)
...|.+++++++++|+...++.|.. .++.++....+ ....+.+.+...... ......+.+.|...+..++. ..+
T Consensus 154 ~~~G~~~~l~aa~~~A~~~v~~k~~-~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-t~~ 227 (295)
T PRK11689 154 NPLSYGLAFIGAFIWAAYCNVTRKY-ARGKNGITLFF---ILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAAA-MGF 227 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhc-cCCCCchhHHH---HHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHHH-HHH
Confidence 3468999999999999999999998 46677765433 223333333333322 21223456677777776754 488
Q ss_pred HHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 93 SQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 93 ~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
++.++++++++.+++.++++.++.|++.+++++++++|+++..+ ++|.++.+.|+++...
T Consensus 228 ~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~------~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 228 GYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSF------WQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHhHHHHhh
Confidence 99999999999999999999999999999999999999999999 9999999999988764
No 50
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.99 E-value=7e-09 Score=93.82 Aligned_cols=137 Identities=15% Similarity=0.207 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCC---ccceeccch-hHHHHHHHHH
Q 042257 191 KGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNT---GIWLLHFDA-KLLAVIYGGF 266 (383)
Q Consensus 191 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~g~ 266 (383)
+|..+.++++++|+...+..|. ..+.+ |....+++.+.+.+...+......+ .. ..+...... .+..+...|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQ-WAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcc-hHHHHHHHhCcccchHHHHHHHHHH
Confidence 4889999999999999999997 44554 7999999999998877665543321 11 111111112 2444555666
Q ss_pred HHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhh
Q 042257 267 VSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLW 330 (383)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~ 330 (383)
+.+..+.++++++++++++.++.+.++.|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999999999999999999887643
No 51
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.95 E-value=4.1e-08 Score=90.87 Aligned_cols=138 Identities=9% Similarity=0.177 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCCCCHHHHHHHHHH
Q 042257 14 AKPYLGVIFMQFCYSIMSVIAKLALNQGMS---PYVLVAYRMVVATILIAPFAFVLERKT-----RPKMTLPIFAKIALV 85 (383)
Q Consensus 14 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 85 (383)
..|.+++++++++|+...++.|... +..+ .....++.++.+.+.+.......+... ....+...|...+..
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIM-SHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence 4699999999999999999999873 3333 233344444444443333322222211 123456788888999
Q ss_pred HHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 86 SLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 86 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
+++...+++.++++++++.+++.++.+..+.|++..++++++++|+++..+ ++|.++.++|+.+...
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~------~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQ------FLGAVLIMAGLYINVF 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHHHhc
Confidence 999989999999999999999999999999999999999999999999999 9999999999998764
No 52
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.91 E-value=3.3e-10 Score=96.74 Aligned_cols=276 Identities=18% Similarity=0.208 Sum_probs=190.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 042257 15 KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQ 94 (383)
Q Consensus 15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 94 (383)
..++.+++-++.||..+.+.... +-+|.+.+..-.+.+.++.+.++++ .+ |..+...+...++.|.+- ..++
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~-~~---p~~T~~~~iv~~isG~~W-s~GQ 73 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF-VS---PELTLTIFIVGFISGAFW-SFGQ 73 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee-ec---CccchhhHHHHHHhhhHh-hhhh
Confidence 46788999999999988876655 5667777777666666666555544 22 345566666667767665 8899
Q ss_pred HHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhh---HHHHHHHHHHHHHhhcCCcccCCcch
Q 042257 95 NLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKIL---GTIVTAGGAMCMTLLKGPILKFPWKQ 170 (383)
Q Consensus 95 ~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~---gi~l~~~Gv~li~~~~~~~~~~~~~~ 170 (383)
...+.|+++.+++.+.++. .+.-+-+.+++++.++|-.+..+ .++ ++++.+.|+.+-.+.++
T Consensus 74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~~--------- 139 (288)
T COG4975 74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQDR--------- 139 (288)
T ss_pred hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeecc---------
Confidence 9999999999999999997 77778889999999999888776 233 34445555555443222
Q ss_pred hhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q 042257 171 VRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIW 250 (383)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 250 (383)
++.+++...+..+|+...+.+.+.|-.|.++.+... .+ ......-+.....+..+.+... ..
T Consensus 140 --------~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v~-g~saiLPqAiGMv~~ali~~~~----~~--- 201 (288)
T COG4975 140 --------NNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--VD-GLSAILPQAIGMVIGALILGFF----KM--- 201 (288)
T ss_pred --------ccccccChHhhhhheeeeeeeccceeeeEeeecccc--cc-chhhhhHHHHHHHHHHHHHhhc----cc---
Confidence 111234455667899999999999999999876553 33 2333333332222222223221 11
Q ss_pred eeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchh----hhhHHHHHHHHH
Q 042257 251 LLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGR----IIGAVIIVIGLY 326 (383)
Q Consensus 251 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~----~~G~~li~~gv~ 326 (383)
.....+..+.-+..|+.-..++..+..+.++.+.++.=.+..+..+++.+-+.++++|+-+..+ ++|..+++.|..
T Consensus 202 ~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai 281 (288)
T COG4975 202 EKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAI 281 (288)
T ss_pred ccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhh
Confidence 1112223333444577777888899999999998888888899999999999999999988765 567778877776
Q ss_pred Hhhh
Q 042257 327 MVLW 330 (383)
Q Consensus 327 l~~~ 330 (383)
+...
T Consensus 282 ~lg~ 285 (288)
T COG4975 282 LLGI 285 (288)
T ss_pred hhhe
Confidence 6543
No 53
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.90 E-value=5.6e-09 Score=92.32 Aligned_cols=213 Identities=11% Similarity=0.062 Sum_probs=130.6
Q ss_pred chhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc-chhhhhcccccccC-
Q 042257 105 TATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW-KQVRLLHNQLETGI- 182 (383)
Q Consensus 105 ~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~-~~~~~~~~~~~~~~- 182 (383)
+......+.+..++++++..+...++|.+..+ +++.++...|++.....+.+...... .......+.++..+
T Consensus 3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~------i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~ 76 (222)
T TIGR00803 3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLK------ILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAK 76 (222)
T ss_pred cccchHHHHhcchHHHHHhcccccceeeehHH------HHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcc
Confidence 34445667788999999999999999988665 99999999998875543211000000 00000000000000
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH----HHhhhcCC-Cccceeccchh
Q 042257 183 QNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTIL----TLAIERGN-TGIWLLHFDAK 257 (383)
Q Consensus 183 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~-~~~~~~~~~~~ 257 (383)
.....+...|....+.+.++-++..++.++..++.+.. .|..........+. .....+.+ ...+..... .
T Consensus 77 ~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 151 (222)
T TIGR00803 77 TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTM----FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIG-Y 151 (222)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCc----hHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccC-C
Confidence 01223456788888888888888888888876654321 22222222211111 11111101 011110000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257 258 LLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV 328 (383)
Q Consensus 258 ~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~ 328 (383)
-.......+....+..+..+.+|+.++...+....++++++.+++++++||+++..++.|+.+++.|++++
T Consensus 152 ~~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 152 PTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred chHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 01111222337778888999999999999999999999999999999999999999999999999987653
No 54
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.85 E-value=6.4e-08 Score=77.06 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH-HH
Q 042257 191 KGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV-SC 269 (383)
Q Consensus 191 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~ 269 (383)
.|.++.+++.++-+...++.|+-.++.++ ...... . . ...... . .....+++|++ ++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~~~-~--------------~p~~~i~lgl~~~~ 59 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALLAF-G--------------LALRAVLLGLAGYA 59 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHHHH-h--------------ccHHHHHHHHHHHH
Confidence 47889999999999999999998887653 221111 0 0 000000 0 01123556778 99
Q ss_pred HHHHHHHHHHhccCccceeecchhHHHHHHHHHHH--HhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257 270 TAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSF--FLAEKLYLGRIIGAVIIVIGLYMVLWGRN 333 (383)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~--~~~e~~~~~~~~G~~li~~gv~l~~~~~~ 333 (383)
+++.+|.+++++.+.+.+.++....+++..+.++. +++|+++..+++|+++|++|+++..+.++
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999998888888885 89999999999999999999999875444
No 55
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.84 E-value=4.9e-08 Score=90.50 Aligned_cols=141 Identities=14% Similarity=0.195 Sum_probs=108.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---------CC-HHHHH
Q 042257 13 NAKPYLGVIFMQFCYSIMSVIAKLALNQ--GMSPYVLVAYRMVVATILIAPFAFVLERKTRPK---------MT-LPIFA 80 (383)
Q Consensus 13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~ 80 (383)
...|.++.++++++|+...+..|... + +.||...+++....+.+.++|+....+...... .. ...+.
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAM-TIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT 221 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence 45699999999999999999999884 5 789999999999999999998876543211000 00 01111
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257 81 KIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK 160 (383)
Q Consensus 81 ~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~ 160 (383)
..+..+.......+.+++.+++++++..++++..+.|++++++++++++|+++..+ ++|.++.+.|+.+....+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~------~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQ------VFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhH------HHHHHHHHHHHHHHHHHh
Confidence 12222332223344677789999999999999999999999999999999999999 999999999999987433
No 56
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=7.2e-09 Score=92.37 Aligned_cols=273 Identities=12% Similarity=0.138 Sum_probs=167.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCCCHHHHHHHHHHHH
Q 042257 9 FLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKT-RPKMTLPIFAKIALVSL 87 (383)
Q Consensus 9 ~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~ 87 (383)
+.++...|.++.+.+.++.|.+..+-|....+ ... .. .|..+. .+.. ++ +....|+
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~---------------~ra~~gg~~yl--~~--~~Ww~G~ 71 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SG---------------LRAGEGGYGYL--KE--PLWWAGM 71 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hc---------------ccccCCCcchh--hh--HHHHHHH
Confidence 44567789999999999999999999987522 110 00 111111 1222 22 3455788
Q ss_pred HHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCC
Q 042257 88 FEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFP 167 (383)
Q Consensus 88 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~ 167 (383)
+.+.++....|.|+.+.|++..+++.++..+..++++..+++||++... .+|..++++|-.+++.. .|..+-.
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~h-aP~e~~i 144 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVIH-APKEQEI 144 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEEe-cCccccc
Confidence 8889999999999999999999999999999999999999999999999 99999999998887743 2321111
Q ss_pred cchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH--------HHH
Q 042257 168 WKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGT--------ILT 239 (383)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~ 239 (383)
.+.++.-+ ...+... .-....+...++.=++ ..+ .++. ......|..+.+.+-.+ ..+
T Consensus 145 ~t~~el~~-------~~~~~~F-liy~~~iil~~~il~~--~~~---p~~g-~tnilvyi~i~s~iGS~tV~svKalg~a 210 (335)
T KOG2922|consen 145 ESVEEVWE-------LATEPGF-LVYVIIIILIVLILIF--FYA---PRYG-QTNILVYIGICSLIGSLTVMSVKALGIA 210 (335)
T ss_pred ccHHHHHH-------HhcCccH-HHHHHHHHHHHHHHhe--eec---cccc-ccceeehhhHhhhhcceeeeeHHHHHHH
Confidence 11111000 0111111 1111111111111111 111 1211 12223333333333211 111
Q ss_pred --HhhhcCCCccceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecch-hHHHHHHHHHHHHhcccc--c---
Q 042257 240 --LAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNP-LGMVIIAVLGSFFLAEKL--Y--- 311 (383)
Q Consensus 240 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~l~~~~~~~e~~--~--- 311 (383)
.... +..+... +..|..++.+..+......-.++|++..+++.++++.+ +-..++++.|.++|+|.- +
T Consensus 211 iklt~~--g~~ql~~--~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~ 286 (335)
T KOG2922|consen 211 IKLTFS--GNNQLFY--PLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALD 286 (335)
T ss_pred HHHHhc--CCccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 1111 2222222 23566666655556666666799999999999988888 567788888999999963 2
Q ss_pred -chhhhhHHHHHHHHHHhh
Q 042257 312 -LGRIIGAVIIVIGLYMVL 329 (383)
Q Consensus 312 -~~~~~G~~li~~gv~l~~ 329 (383)
...++|+..++.|+++..
T Consensus 287 i~~~~~Gf~ti~~G~flL~ 305 (335)
T KOG2922|consen 287 IAGELCGFVTIFLGIFLLH 305 (335)
T ss_pred HHHHHHhHHHhhheeeEee
Confidence 346788899999988874
No 57
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.76 E-value=4.5e-08 Score=76.71 Aligned_cols=107 Identities=20% Similarity=0.315 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHH
Q 042257 226 LICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSF 304 (383)
Q Consensus 226 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~ 304 (383)
+....+.+..........+ ..+.+.......+...+..|++ ...++.++.+++++.+ ..+.++..+.|+++.+++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGR-LRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHcc-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554443222 1122222222345566666777 5699999999999999 58889999999999999999
Q ss_pred HhcccccchhhhhHHHHHHHHHHhhhccCC
Q 042257 305 FLAEKLYLGRIIGAVIIVIGLYMVLWGRNK 334 (383)
Q Consensus 305 ~~~e~~~~~~~~G~~li~~gv~l~~~~~~~ 334 (383)
+++|+++..+++|.+++++|+.+..+.+.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999886654
No 58
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.74 E-value=3.7e-07 Score=75.62 Aligned_cols=133 Identities=19% Similarity=0.288 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCC----C-------CHHH
Q 042257 16 PYLGVIFMQFCYSIMSVIAKLALNQ------GMSPYVLVAYRMVVATILIAPFAFVLERKTRPK----M-------TLPI 78 (383)
Q Consensus 16 g~l~~~~~~~~~~~~~~~~k~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~ 78 (383)
|.++++++.++.++..+..|..+.+ +.++.....+....+.+++.+.+...+...... . +.+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5788999999999999999987744 789999999999999999999888765543111 0 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHH
Q 042257 79 FAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMC 155 (383)
Q Consensus 79 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l 155 (383)
+..++..|++. ...+...+..++++++...+++.....+++.++++++++|+++..+ ++|+.+++.|+++
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~------~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQ------IIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHH------HHHHHHHHHHHhe
Confidence 55555566665 7889999999999999999999999999999999999999999998 9999999999864
No 59
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.69 E-value=5.5e-07 Score=82.80 Aligned_cols=128 Identities=15% Similarity=0.115 Sum_probs=103.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH----HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHH
Q 042257 14 AKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMV----VATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFE 89 (383)
Q Consensus 14 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 89 (383)
.+|+++.+++.++++...+..|.. +.+|...++..+. .+.++..+. ++ .++. ..+.....++.|++.
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~----~~-~~~~-~~~~~~~~~~~Gi~~ 221 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH----IL-AKPL-KKYAILLNILPGLMW 221 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH----hc-ccch-HHHHHHHHHHHHHHH
Confidence 679999999999999999999977 4888888766666 444444333 11 1222 233444456688885
Q ss_pred HHHHHHHHHhhcc-ccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchh----hHHHHHHHHHHHHH
Q 042257 90 PVISQNLYYTGMK-YTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKI----LGTIVTAGGAMCMT 157 (383)
Q Consensus 90 ~~~~~~~~~~al~-~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~----~gi~l~~~Gv~li~ 157 (383)
.+++.+|+.+.+ +.+++.++++.+..|+...+.+++++||+.++++ + +|.++.+.|+.++.
T Consensus 222 -~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~------~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 222 -GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKRE------MIAISVGIILIIIAANILG 287 (290)
T ss_pred -HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcce------eehhHHHHHHHHHHHHHHh
Confidence 999999999999 9999999999999999999999999999999999 9 99999999998875
No 60
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.66 E-value=9.8e-07 Score=83.37 Aligned_cols=139 Identities=13% Similarity=0.148 Sum_probs=102.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHhhhcCCC-----------CCCC
Q 042257 13 NAKPYLGVIFMQFCYSIMSVIAKLALNQ------GMSPYVLVAYRMVVATILIAPFAFVLERKTR-----------PKMT 75 (383)
Q Consensus 13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-----------~~~~ 75 (383)
...|.+++++++++|+...++.|....+ +.++.....+....+.++++|+....+.... ....
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 4679999999999999999999988532 3567777777788888888888764322110 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHH
Q 042257 76 LPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMC 155 (383)
Q Consensus 76 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l 155 (383)
........+.+.+.....+.+.|.+++++++..+++...+.|+++.++++++++|+++..+ ++|.++++.|+++
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~------~iG~~lii~Gv~l 345 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLG------YLGMAVAILGALL 345 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHh------HHHHHHHHHHHHH
Confidence 1111111222222223344444569999999999999999999999999999999999999 9999999999987
Q ss_pred HH
Q 042257 156 MT 157 (383)
Q Consensus 156 i~ 157 (383)
-.
T Consensus 346 Ys 347 (350)
T PTZ00343 346 YS 347 (350)
T ss_pred Hh
Confidence 54
No 61
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.64 E-value=8.4e-07 Score=68.94 Aligned_cols=68 Identities=15% Similarity=0.087 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHH
Q 042257 84 LVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMT 157 (383)
Q Consensus 84 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 157 (383)
..++++...+..++..++++.|.+.+..+.++.++++++++++++|||++.++ ++|+.+.++|++++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 34446678899999999999999999999999999999999999999999998 999999999999875
No 62
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.61 E-value=1.9e-06 Score=79.04 Aligned_cols=135 Identities=13% Similarity=0.246 Sum_probs=107.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 042257 13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVA-YRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPV 91 (383)
Q Consensus 13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 91 (383)
...|.++.++++++|+...+..|... ..++..... +.......+..+... .... .....+.+......|+++..
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~g~~~~~ 226 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFL--SGFG-APILSRAWLLLLYLGVFSTG 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHh--cccc-ccCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999883 566666666 444322222222222 1111 34456788889999999866
Q ss_pred HHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 92 ISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 92 ~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
.++.++++++++.+++.++++..+.|++..++++++++|+++..+ ++|+++.+.|+.+...
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~------~~G~~li~~g~~l~~~ 287 (292)
T COG0697 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQ------LLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999 9999999999998863
No 63
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.53 E-value=1.3e-06 Score=77.24 Aligned_cols=140 Identities=17% Similarity=0.219 Sum_probs=115.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccce-eccchhHHHHHHHHHH
Q 042257 189 LTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWL-LHFDAKLLAVIYGGFV 267 (383)
Q Consensus 189 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~ 267 (383)
...|+++++.+-+.|+..-.+.|.+ +..+ +..+..++.+.+.+.......+..+ ..+-+. ...+..+......++.
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~-~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQ-WRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCcHHHHHHHHHHHH
Confidence 3479999999999999998888765 4444 5788899988888877777665543 222222 2334567777777777
Q ss_pred HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhc
Q 042257 268 SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWG 331 (383)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~ 331 (383)
-.....++.||..+.....+|.-.+++|.+.+++|.++++|+++..|++..++..+|+....+.
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999877653
No 64
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.47 E-value=3.6e-06 Score=72.73 Aligned_cols=140 Identities=16% Similarity=0.170 Sum_probs=119.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHH
Q 042257 10 LSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFE 89 (383)
Q Consensus 10 ~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 89 (383)
..-...|..+.+.+..+|+.+-+..|.. .+..+.-.-+..-++++.++.+|+-....... -.++.....-+..++++
T Consensus 143 ~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~-g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlS 219 (292)
T COG5006 143 WSLDPVGVALALGAGACWALYIVLGQRA-GRAEHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLS 219 (292)
T ss_pred CcCCHHHHHHHHHHhHHHHHHHHHcchh-cccCCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHh
Confidence 3445689999999999999999999988 35677777788889999999999887543332 34456677778889999
Q ss_pred HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
..+.+.+-..++++.|....+++.++.|.+..+.++++++|+++..| |+++...+.+..-..+
T Consensus 220 SalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAsaG~~l 282 (292)
T COG5006 220 SALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAASAGSTL 282 (292)
T ss_pred cccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999 9999988887765544
No 65
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.46 E-value=1.3e-06 Score=67.95 Aligned_cols=65 Identities=11% Similarity=0.089 Sum_probs=60.5
Q ss_pred HHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhh
Q 042257 265 GFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVL 329 (383)
Q Consensus 265 g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~ 329 (383)
+++ .+.++.++..++++.+.+.+-++.++.++++.+++++++||+++..+++|.+++++|+.+..
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 335 78899999999999999999999999999999999999999999999999999999998764
No 66
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.35 E-value=1.1e-05 Score=64.20 Aligned_cols=118 Identities=17% Similarity=0.204 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 042257 15 KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQ 94 (383)
Q Consensus 15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 94 (383)
+++++++++.++-+...++.|... ++.+....... . .. .+ ... ..+ ...+..|++.+.+++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~-~~~g~~~~~~~-~-~~---~~-~~~--------~~p----~~~i~lgl~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGM-SRLPLLSHAWD-F-IA---AL-LAF--------GLA----LRAVLLGLAGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-hhCCCccchhH-H-HH---HH-HHH--------hcc----HHHHHHHHHHHHHHH
Confidence 478899999999999999999885 43333221111 0 00 00 000 001 124667888889999
Q ss_pred HHHHhhccccchhhHHHhhhhhHHHHHHHHHH--HhhcccccccccccchhhHHHHHHHHHHHHH
Q 042257 95 NLYYTGMKYTTATFTVAMCNILPALTFLMAWI--FRLEKVKIKSTHSQAKILGTIVTAGGAMCMT 157 (383)
Q Consensus 95 ~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~--~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 157 (383)
.++.+++++.|++.+.++.+..+.++.+.++. +++|+++..+ ++|+++.++|++++.
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence 99999999999999999999999889888885 8999999998 999999999999986
No 67
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=98.21 E-value=0.00089 Score=61.23 Aligned_cols=301 Identities=14% Similarity=0.118 Sum_probs=185.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHh-hhcCC----CCCCCHHHHHHHHHHHH
Q 042257 13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFV-LERKT----RPKMTLPIFAKIALVSL 87 (383)
Q Consensus 13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~g~ 87 (383)
-..|+++..++.++=|...+-.|.. ++++--..-....+++-+++ |+... ..-+. ....+...+....+.|+
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkv--k~WsWEs~Wlv~gi~swli~-P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKV--KGWSWESYWLVQGIFSWLIV-PWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhc--CCccHHHHHHHHHHHHHHHH-HHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 4578999999999999999999988 56654444444444443333 33222 11111 12234566777777888
Q ss_pred HHHHHHHHHHHhhccccchhhHHHh-hhhhHHHHHHHHHHHhhccc-ccccccccchhhHHHHHHHHHHHHHhhcCCccc
Q 042257 88 FEPVISQNLYYTGMKYTTATFTVAM-CNILPALTFLMAWIFRLEKV-KIKSTHSQAKILGTIVTAGGAMCMTLLKGPILK 165 (383)
Q Consensus 88 ~~~~~~~~~~~~al~~~~~~~a~~l-~~~~pi~~~ll~~~~~~e~~-~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~ 165 (383)
+- .++...|=.+++|++.+..+-+ ..+..++-.++-.++.++-- -..++..+.-++|++++++|+.+...... ..+
T Consensus 82 lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~-~Ke 159 (344)
T PF06379_consen 82 LW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS-MKE 159 (344)
T ss_pred HH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH-hhh
Confidence 86 8889999999999999988544 47777788887777654310 02233455569999999999999875431 110
Q ss_pred CCcchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHh------hcCC-chh----HHHHHHHHHHHHH
Q 042257 166 FPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLL------KSYP-AEL----SLTALICFMSSVE 234 (383)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~------~~~~-~~~----~~~~~~~~~~~i~ 234 (383)
. +.+++..+.+..+|.++++++.+.-|+++.-...-. .... +|. ......+.-+.+.
T Consensus 160 -----~-------~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~t 227 (344)
T PF06379_consen 160 -----K-------ELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFIT 227 (344)
T ss_pred -----h-------hhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHH
Confidence 0 011123445667999999999999888877543210 0000 111 1223344455566
Q ss_pred HHHHHHhhhcC--CCc---cceec-c--chhHHHHHHHHHHHHHHHHHHHHHHhccCc----cceeecchhHHHHHHHHH
Q 042257 235 GTILTLAIERG--NTG---IWLLH-F--DAKLLAVIYGGFVSCTAYFIMGWLMKRRGP----VFVSSFNPLGMVIIAVLG 302 (383)
Q Consensus 235 ~~~~~~~~~~~--~~~---~~~~~-~--~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~----~~~s~~~~~~pv~~~l~~ 302 (383)
....+++.... +.. .+... + .......+..|++=..++++|..+-.+.+. .--.+.+.+..+++-+++
T Consensus 228 N~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwG 307 (344)
T PF06379_consen 228 NLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWG 307 (344)
T ss_pred HHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH
Confidence 66666543210 111 11111 1 123444455566666677777777776663 344567778888999999
Q ss_pred HHHhcccc------cchhhhhHHHHHHHHHHhhhc
Q 042257 303 SFFLAEKL------YLGRIIGAVIIVIGLYMVLWG 331 (383)
Q Consensus 303 ~~~~~e~~------~~~~~~G~~li~~gv~l~~~~ 331 (383)
. +++|.- -...++|+++++.++.+.-++
T Consensus 308 l-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G 341 (344)
T PF06379_consen 308 L-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGYG 341 (344)
T ss_pred H-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 7 688842 244688999999988877654
No 68
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.17 E-value=4.8e-05 Score=70.56 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=100.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH
Q 042257 189 LTKGALLIAAGCFAWSCFIILQAFLLKS-YPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV 267 (383)
Q Consensus 189 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 267 (383)
...+.+++-.-++|-+...+.+..+.++ .+.|...+++....-.++..+.... .+ +...+.......|+.-+.++++
T Consensus 11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~-r~-~~~~~~~~~~~~~w~y~lla~~ 88 (334)
T PF06027_consen 11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLY-RR-GFKKWLKVLKRPWWKYFLLALL 88 (334)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhh-cc-ccccchhhcchhHHHHHHHHHH
Confidence 3445555555566666666666655555 2235555555544444444443332 22 2222222223345555556888
Q ss_pred HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCC
Q 042257 268 SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNK 334 (383)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~ 334 (383)
-..++++...|.++++.+.++++.....++++++++++++++.++.+++|+++.++|+.+....+..
T Consensus 89 Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 89 DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 8889999999999999999999999999999999999999999999999999999999988776543
No 69
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.06 E-value=6.2e-05 Score=67.16 Aligned_cols=118 Identities=18% Similarity=0.084 Sum_probs=93.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Q 042257 11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEP 90 (383)
Q Consensus 11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 90 (383)
++..++++.++++.+.+..+.++.|.. +.++....+-+.+...+....+....+++. ..+...+-.+.|++-
T Consensus 134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~----~~k~~~~nil~G~~w- 205 (269)
T PF06800_consen 134 SNMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFSKKPF----FEKKSWKNILTGLIW- 205 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcccccc----cccchHHhhHHHHHH-
Confidence 345779999999999999999998886 678888877776666666555555432221 122233446667775
Q ss_pred HHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhccccccc
Q 042257 91 VISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKS 136 (383)
Q Consensus 91 ~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~ 136 (383)
..++.+++.|.+..+.+.+-.+.++.++...+.+.+++||+=++++
T Consensus 206 ~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke 251 (269)
T PF06800_consen 206 GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE 251 (269)
T ss_pred HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh
Confidence 9999999999999999999999999999999999999999988776
No 70
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.01 E-value=2.2e-06 Score=74.53 Aligned_cols=137 Identities=13% Similarity=0.179 Sum_probs=102.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH
Q 042257 188 DLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV 267 (383)
Q Consensus 188 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 267 (383)
...+|..+..++ ..+...+++.++..... |+.......++-.++..+..++... . .+.......| ++.=|+.
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~-~--v~gp~g~R~~--LiLRg~m 106 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQ-P--VIGPEGKRKW--LILRGFM 106 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEee-e--eecCCCcEEE--EEeehhh
Confidence 445788888888 77777777777765543 4565666666666666665543322 1 1222222222 3334666
Q ss_pred HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257 268 SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR 332 (383)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~ 332 (383)
+..+.++.+|++++.+-+.+..+....|+++.+++|++++|+.+....+|..+.+.|+++..+..
T Consensus 107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 88888999999999999999999999999999999999999999999999999999999988654
No 71
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.96 E-value=0.00015 Score=67.31 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhhcCC-c--hhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHHHHHHHHHH
Q 042257 203 WSCFIILQAFLLKSYP-A--ELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLM 279 (383)
Q Consensus 203 ~a~~~v~~k~~~~~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~ 279 (383)
+..+.+++++..++.. . +..+++.+.....+...+...... ....+...+...+..+++..++..+.+.++
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 85 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK------FPKSRKIPLKKYAILSFLFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc------ccCCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567777766643 2 567777777777776666554332 111122234445555777888889999999
Q ss_pred hccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCCCCCC
Q 042257 280 KRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKDRSPS 339 (383)
Q Consensus 280 ~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~~~~~ 339 (383)
++.+.....+.....|+.++++++++++++.+..++++++++.+|+.+....+.++.+.+
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~ 145 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSS 145 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccccc
Confidence 999999999999999999999999999999999999999999999999988766544433
No 72
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.87 E-value=7.5e-05 Score=58.39 Aligned_cols=65 Identities=18% Similarity=0.411 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhccCccceeec-chhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257 268 SCTAYFIMGWLMKRRGPVFVSSF-NPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR 332 (383)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~ 332 (383)
.+++++++..++|+.+.+.+=.+ ..+..+.+.+.++++++|+++..+++|+++|++|+.......
T Consensus 40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 88899999999999998755444 568999999999999999999999999999999998875443
No 73
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.84 E-value=0.00034 Score=56.55 Aligned_cols=132 Identities=15% Similarity=0.119 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHH
Q 042257 192 GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTA 271 (383)
Q Consensus 192 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 271 (383)
..++++++.++-++...++.++.++.++|....+..+..+.+....+.++.++ . .........|+..+ -|+++...
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~-~--~~~~~~~~p~w~~l-GG~lG~~~ 77 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGR-P--SLASLSSVPWWAYL-GGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcc-c--ccchhccCChHHhc-cHHHHHHH
Confidence 35788999999999999999998888777888999999999998888877664 2 22211222233322 35567787
Q ss_pred HHHHHHHHhccCccceeec-chhHHHHHHHHHHH----HhcccccchhhhhHHHHHHHHHH
Q 042257 272 YFIMGWLMKRRGPVFVSSF-NPLGMVIIAVLGSF----FLAEKLYLGRIIGAVIIVIGLYM 327 (383)
Q Consensus 272 ~~~~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~----~~~e~~~~~~~~G~~li~~gv~l 327 (383)
..+..+.+++.+++....+ ..-+.+.+++++.+ .-++++++.+++|.++++.|+.+
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 8888999999998755544 45677777888875 23456899999999999999864
No 74
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.76 E-value=0.00011 Score=67.69 Aligned_cols=119 Identities=21% Similarity=0.208 Sum_probs=89.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHH
Q 042257 187 EDLTKGALLIAAGCFAWSCFIILQAFLLKSYPA-ELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGG 265 (383)
Q Consensus 187 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 265 (383)
.+...|+.+++.++++.+....++|+...+.+. +.... .. ...+ + .++ .|+. |
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~~--------~~~~---------l--~~~-~W~~----G 56 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--SG--------GRSY---------L--RRP-LWWI----G 56 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ch--------hhHH---------H--hhH-HHHH----H
Confidence 345789999999999999999999998776542 01100 00 0000 0 011 2222 3
Q ss_pred HH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhc
Q 042257 266 FV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWG 331 (383)
Q Consensus 266 ~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~ 331 (383)
++ ..++..+...|+...+++.++++..+..+++.+++..+++|+++...+.|+++++.|..+....
T Consensus 57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 33 5666777788999999999999999999999999999999999999999999999998876543
No 75
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.71 E-value=0.00032 Score=65.19 Aligned_cols=144 Identities=10% Similarity=0.052 Sum_probs=98.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH-----HHhhhcCCCccceeccchhHHHHH
Q 042257 188 DLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTIL-----TLAIERGNTGIWLLHFDAKLLAVI 262 (383)
Q Consensus 188 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 262 (383)
+...|+++.+++++|++.+.+-.|+ .+..+ .+.. |. ..+. +...+ +.+..+...+.....+...+...+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~-v~gi-~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~ 77 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS-VGGI-FSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF 77 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH-HHHH-HHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence 3468999999999999999998888 45443 3333 33 2222 22111 111112111222323445667777
Q ss_pred HHHHHHHHHHHHHHHHHhccCccceeecch-hHHHHHHHHHHHHhcccc---c----chhhhhHHHHHHHHHHhhhccCC
Q 042257 263 YGGFVSCTAYFIMGWLMKRRGPVFVSSFNP-LGMVIIAVLGSFFLAEKL---Y----LGRIIGAVIIVIGLYMVLWGRNK 334 (383)
Q Consensus 263 ~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~l~~~~~~~e~~---~----~~~~~G~~li~~gv~l~~~~~~~ 334 (383)
..|++=.+++..+..++++.+.+...++.. ++.+.+.+++.+++||-. + ...++|.+++++|+.+..+..++
T Consensus 78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 778888889999999999999987766655 889999999999999865 2 34688999999999999885544
Q ss_pred CCC
Q 042257 335 DRS 337 (383)
Q Consensus 335 ~~~ 337 (383)
+++
T Consensus 158 k~~ 160 (345)
T PRK13499 158 KER 160 (345)
T ss_pred ccc
Confidence 333
No 76
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.69 E-value=0.00021 Score=55.18 Aligned_cols=65 Identities=20% Similarity=0.421 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhccCccce-eecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257 268 SCTAYFIMGWLMKRRGPVFV-SSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR 332 (383)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~ 332 (383)
..+++.++..++++.+.+.+ +....+..+.+.+.++++++|++++.+++|+++|+.|+.......
T Consensus 40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 78888889999999987654 444568889999999999999999999999999999999986544
No 77
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.62 E-value=0.00019 Score=64.12 Aligned_cols=80 Identities=10% Similarity=0.159 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCC
Q 042257 256 AKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKD 335 (383)
Q Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~ 335 (383)
.+......-+++..+.+.+.+.++++.+|+...++..++.+++.++++++++.+++..||.+..+.++|+.+........
T Consensus 15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 35566666777899999999999999999999999999999999999999999999999999999999999988776654
No 78
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.61 E-value=0.00025 Score=55.48 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 85 VSLFEPVISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 85 ~g~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
..+.++..++.++..+++++|.+.+..+. .+.-+.++++++++++|+++..+ ++|+.+.++|++++-.
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~------~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMK------IAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHhhc
Confidence 34555688899999999999999998775 79999999999999999999998 9999999999988864
No 79
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.0013 Score=53.09 Aligned_cols=139 Identities=16% Similarity=0.086 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHH
Q 042257 190 TKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSC 269 (383)
Q Consensus 190 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 269 (383)
....+.++++.++-........++.+..++|.......+.++++.+..+.++.+. ...+.......|+... -|++..
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~--~~~~a~~~~~pwW~~~-GG~lGa 80 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG--HPGLAAVASAPWWAWI-GGLLGA 80 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC--CCchhhccCCchHHHH-ccchhh
Confidence 4677889999999999999999999988888899999999999988888877443 2222222221222222 244455
Q ss_pred HHHHHHHHHHhccCcc-ceeecchhHHHHHHHHHHHHhc----ccccchhhhhHHHHHHHHHHhhhc
Q 042257 270 TAYFIMGWLMKRRGPV-FVSSFNPLGMVIIAVLGSFFLA----EKLYLGRIIGAVIIVIGLYMVLWG 331 (383)
Q Consensus 270 ~~~~~~~~a~~~~~~~-~~s~~~~~~pv~~~l~~~~~~~----e~~~~~~~~G~~li~~gv~l~~~~ 331 (383)
+--+.......+.+++ .......-+.+.+++++-+=+. .+++..++.|.+++++|+++..+.
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 5455556667777765 5666667788888888865333 458999999999999996665443
No 80
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00042 Score=52.38 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhhccccchhhHHHh-hhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 86 SLFEPVISQNLYYTGMKYTTATFTVAM-CNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 86 g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
.++++.+++.++-.|++++|.+.+..+ .....+.+++.++++++|+++..+ ++++.+.++|++.+-.
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~------~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIK------LLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHH------HHHHHHHHHHHHHhhh
Confidence 444557889999999999999999665 589999999999999999999998 9999999999998753
No 81
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.55 E-value=0.0014 Score=50.30 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHH
Q 042257 87 LFEPVISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCM 156 (383)
Q Consensus 87 ~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li 156 (383)
+.++..++.+...+++++|.+.+..+. ....+.+++.+++++||+++..+ ++|+.+.+.|++.+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHh
Confidence 444577888999999999999996665 78899999999999999999998 99999999999886
No 82
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.52 E-value=0.00042 Score=52.96 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhccCcc-ceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhh
Q 042257 268 SCTAYFIMGWLMKRRGPV-FVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLW 330 (383)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~-~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~ 330 (383)
..+++++...++|+.+.+ -.+...-+..+.+.+.++++++|++++.+++|+.+++.|+.....
T Consensus 39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 788899999999999876 566667789999999999999999999999999999999988754
No 83
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.51 E-value=0.00054 Score=52.88 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 86 SLFEPVISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 86 g~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
.++++..++.++..++++.|.+.+..+. .+..+.++++++++++|+++..+ ++|+.+.++|++++-.
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 4555678888999999999999997774 68999999999999999999998 9999999999999864
No 84
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.49 E-value=0.002 Score=52.05 Aligned_cols=130 Identities=14% Similarity=0.090 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042257 17 YLGVIFMQFCYSIMSVIAKLALNQGM-SPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQN 95 (383)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (383)
.++.+++..+-+.+..+.-.. .+.. +|+..+++.+..+++++..+....+++.....+.-. ++...-|+++ +..-.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L-~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p-~w~~lGG~lG-~~~V~ 79 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQL-GKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVP-WWAYLGGLLG-VFFVL 79 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC-hHHhccHHHH-HHHHH
Confidence 466777888888888887776 3555 499999999999999998888876654322222112 2334467777 78888
Q ss_pred HHHhhccccchhhHHHhhhh-hHHHHHHHHHH----HhhcccccccccccchhhHHHHHHHHHHH
Q 042257 96 LYYTGMKYTTATFTVAMCNI-LPALTFLMAWI----FRLEKVKIKSTHSQAKILGTIVTAGGAMC 155 (383)
Q Consensus 96 ~~~~al~~~~~~~a~~l~~~-~pi~~~ll~~~----~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l 155 (383)
+..+.....+++.+..+.-. +-+...++..+ .-+++++..+ ++|+++.++|+.+
T Consensus 80 ~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r------~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 80 SNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRR------ILGLALMIAGVIL 138 (138)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHH------HHHHHHHHHHHhC
Confidence 88889999999998777644 44444555554 3556777675 9999999999863
No 85
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00038 Score=52.65 Aligned_cols=65 Identities=18% Similarity=0.358 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhccCcc-ceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257 268 SCTAYFIMGWLMKRRGPV-FVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR 332 (383)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~-~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~ 332 (383)
...+|.+...++|+.+.. -.++..-...+.+.+.++++|+|+.+..+++|.+++++|+......+
T Consensus 40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 777888999999999875 56777888999999999999999999999999999999999876543
No 86
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.48 E-value=0.0016 Score=49.98 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhccCcc-ceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhh
Q 042257 267 VSCTAYFIMGWLMKRRGPV-FVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVL 329 (383)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~-~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~ 329 (383)
...+++++...++|+.+.+ -.++..-+..+.+.+.++++++|++++.+++|+++|+.|+....
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3788889999999999876 55666778889999999999999999999999999999998764
No 87
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=97.43 E-value=0.00086 Score=61.59 Aligned_cols=146 Identities=13% Similarity=0.165 Sum_probs=117.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHhhhc---CCCCCCCHHHHHHH
Q 042257 9 FLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQ---GMSPYVLVAYRMVVATILIAPFAFVLER---KTRPKMTLPIFAKI 82 (383)
Q Consensus 9 ~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 82 (383)
+-.+...|-++.+++++++|...++.|.-.++ ..|--.+..+-.++..+++||..+.... +...-++..+....
T Consensus 241 ~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~v 320 (416)
T KOG2765|consen 241 PASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLV 320 (416)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEee
Confidence 33456889999999999999999999987522 3566666666777888888876665432 22222333445556
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257 83 ALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK 160 (383)
Q Consensus 83 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~ 160 (383)
+..++++.+++.+++.+|.-.+++-.+++-.+++....++.-.++.+.++++.. ++|.+..++|.+++...+
T Consensus 321 v~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~------iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 321 VFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALY------IIGSIPIFVGFVIVNISS 392 (416)
T ss_pred eHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHhheeccc
Confidence 778899999999999999999999999999999999999999999999999998 999999999999987543
No 88
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.41 E-value=0.00037 Score=53.63 Aligned_cols=109 Identities=12% Similarity=0.208 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042257 21 IFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTG 100 (383)
Q Consensus 21 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a 100 (383)
++..++||..+.+.|... ++.++..-.. |..-....+ ...|. +.+.-+++ -.+...|++.
T Consensus 2 l~Vg~~WG~Tnpfik~g~-~~~~~~~~~~-~~~~~~~~L----------------l~n~~-y~ipf~lN-q~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGS-SGLEKVKASL-QLLQEIKFL----------------LLNPK-YIIPFLLN-QSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHHH-hhcCCccchH-HHHHHHHHH----------------HHhHH-HHHHHHHH-HHHHHHHHHH
Confidence 456789999999999984 5555444331 321111111 11112 22222333 6678889999
Q ss_pred ccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHH
Q 042257 101 MKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMC 155 (383)
Q Consensus 101 l~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l 155 (383)
+...+.+.+.++. ++.-+||++.++++.+|..+++. ++|+.+.++|+.+
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~------~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRT------WLGMALILAGVAL 111 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhH------HHHHHHHHcCeee
Confidence 9999999999995 99999999999888777777776 9999999999765
No 89
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.39 E-value=0.00095 Score=50.99 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHH
Q 042257 87 LFEPVISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMT 157 (383)
Q Consensus 87 ~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 157 (383)
++++..++.+...+++++|.+.+..+. ....+.+++.+++++||+++..+ ++|+.+.+.|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR------LLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhhh
Confidence 445578899999999999999996665 69999999999999999999998 999999999999875
No 90
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.36 E-value=0.00058 Score=62.72 Aligned_cols=139 Identities=13% Similarity=0.236 Sum_probs=112.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHHH-HHHHhhhcCCC----C-CCCHHHHHHH
Q 042257 12 HNAKPYLGVIFMQFCYSIMSVIAKLAL---NQGMSPYVLVAYRMVVATILIA-PFAFVLERKTR----P-KMTLPIFAKI 82 (383)
Q Consensus 12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~---~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~~----~-~~~~~~~~~~ 82 (383)
-+..|.+.++++.+.+++..++.|..+ ..+.+++.......-++.+.++ |+....+.... . ..+...+. .
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~-~ 238 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLI-L 238 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHH-H
Confidence 357899999999999999999999887 3468999999998888988888 87766444332 1 22333333 3
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 83 ALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 83 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
....++. ...|..-|..++++++-..++....--+++.+.+++++++++++.+ ..|.+++++|+.+=..
T Consensus 239 ~~~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n------~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 239 LLNSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLN------ALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhh------HHHHHHHHHHHHHHHH
Confidence 3334555 6677888999999999999999999999999999999999999999 9999999999998653
No 91
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.23 E-value=0.0039 Score=55.53 Aligned_cols=190 Identities=8% Similarity=0.029 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042257 16 PYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQN 95 (383)
Q Consensus 16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (383)
|++..+++++++|.+++-.|.. +..|++.+-++.+....+.-+.....++. +. .+++.++-|.+- +.++.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~--~~gDg~~fQw~~~~~i~~~g~~v~~~~~~---p~----f~p~amlgG~lW-~~gN~ 70 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF--DTGDGFFFQWVMCSGIFLVGLVVNLILGF---PP----FYPWAMLGGALW-ATGNI 70 (254)
T ss_pred CchhHHHHHHHhcccceeeEec--cCCCcHHHHHHHHHHHHHHHHHHHHhcCC---Cc----ceeHHHhhhhhh-hcCce
Confidence 5778999999999999999987 56788888888777777766666555322 22 123344445554 88999
Q ss_pred HHHhhccccchhhHHHhhhhhHHHH-HHHHHH-HhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc-----
Q 042257 96 LYYTGMKYTTATFTVAMCNILPALT-FLMAWI-FRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW----- 168 (383)
Q Consensus 96 ~~~~al~~~~~~~a~~l~~~~pi~~-~ll~~~-~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~----- 168 (383)
+-.-.++.++.+....+.+..-+.+ -..+.+ +++++.+.. .....-.+|++++++|..+...-+.+......
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~ 149 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEET 149 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCcccccccc
Confidence 9999999999999999987654443 333333 455444433 12344578888888888877654433211100
Q ss_pred --chhhhhccccc----ccCCC-----CccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042257 169 --KQVRLLHNQLE----TGIQN-----NEEDLTKGALLIAAGCFAWSCFIILQAFLLKS 216 (383)
Q Consensus 169 --~~~~~~~~~~~----~~~~~-----~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~ 216 (383)
..++..+..++ +.++. ...+...|..+++++++.|+...+=..+..++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 150 PLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred ccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 11101110010 00010 11246789999999999999887766665444
No 92
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.96 E-value=0.0014 Score=58.34 Aligned_cols=134 Identities=10% Similarity=0.087 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHH
Q 042257 192 GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTA 271 (383)
Q Consensus 192 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 271 (383)
|.+.+++|+++++...+=.|+.-.. |++....++.....+..+.+.++.+. .. .+.+.+.-|.+-..+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~---p~-------f~p~amlgG~lW~~g 68 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGF---PP-------FYPWAMLGGALWATG 68 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCC---Cc-------ceeHHHhhhhhhhcC
Confidence 5677889999999888887765332 45666666666555555555543321 11 122223334556667
Q ss_pred HHHHHHHHhccCccceeecch-hHHHHHHHHHHH-Hhcccc-----cchhhhhHHHHHHHHHHhhhccCCCCC
Q 042257 272 YFIMGWLMKRRGPVFVSSFNP-LGMVIIAVLGSF-FLAEKL-----YLGRIIGAVIIVIGLYMVLWGRNKDRS 337 (383)
Q Consensus 272 ~~~~~~a~~~~~~~~~s~~~~-~~pv~~~l~~~~-~~~e~~-----~~~~~~G~~li~~gv~l~~~~~~~~~~ 337 (383)
+.+-.-.+|..+-...-.+-. .+.+.+-..+.+ +||+.+ +...++|.+++++|..++..-|...++
T Consensus 69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~ 141 (254)
T PF07857_consen 69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKE 141 (254)
T ss_pred ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCC
Confidence 777788888888665444443 466666666654 565543 466899999999999988877765533
No 93
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.94 E-value=0.0052 Score=46.03 Aligned_cols=55 Identities=22% Similarity=0.450 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhccCccce-eecchhHHHHHHHHHHHHhcccccchhhhhHHHH
Q 042257 267 VSCTAYFIMGWLMKRRGPVFV-SSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVII 321 (383)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li 321 (383)
...++++++..++|+.+.+.+ .....+..+...+.+.+++||+++..+++|+++|
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 378888999999999998866 4455689999999999999999999999999876
No 94
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.00046 Score=59.76 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHH
Q 042257 192 GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTA 271 (383)
Q Consensus 192 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 271 (383)
.++++++=++.|+..-....+... .|...+.-+.+-+.++.+.+.++..+ .. ....+..-+..|++=.++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGtT~GALifaiiv~~~~~p--~~-----T~~~~iv~~isG~~Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLGTTLGALIFAIIVFLFVSP--EL-----TLTIFIVGFISGAFWSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHhhhhccHHHHHHHHHHheeecC--cc-----chhhHHHHHHhhhHhhhh
Confidence 568889999999987776544322 34555544444444444444443221 11 112344445556667778
Q ss_pred HHHHHHHHhccCccceeecch-hHHHHHHHHHHHHhcccccchhh----hhHHHHHHHHHHhhhccCC
Q 042257 272 YFIMGWLMKRRGPVFVSSFNP-LGMVIIAVLGSFFLAEKLYLGRI----IGAVIIVIGLYMVLWGRNK 334 (383)
Q Consensus 272 ~~~~~~a~~~~~~~~~s~~~~-~~pv~~~l~~~~~~~e~~~~~~~----~G~~li~~gv~l~~~~~~~ 334 (383)
+...+++++..+.+++.++.. .+.+-+.++++++|||..+..+. +..++++.|+++..++++.
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~ 140 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN 140 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence 999999999999999999887 78889999999999999887653 3466777888877765553
No 95
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.85 E-value=0.0037 Score=46.84 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHH
Q 042257 86 SLFEPVISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIV 148 (383)
Q Consensus 86 g~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l 148 (383)
.+.+...+..++..++++.|.+.+..+. .+..+.+.+.+.+++||+++..+ +.|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence 4445578889999999999999997765 69999999999999999999998 888875
No 96
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.094 Score=48.37 Aligned_cols=142 Identities=13% Similarity=0.041 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCc---hhHHHHHHHHHHHHHHHHHHHhhhcC-------CCccceeccchhHHHH
Q 042257 192 GALLIAAGCFAWSCFIILQAFLLKSYPA---ELSLTALICFMSSVEGTILTLAIERG-------NTGIWLLHFDAKLLAV 261 (383)
Q Consensus 192 G~~~~l~a~~~~a~~~v~~k~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 261 (383)
-.+..+...+-.+......|+..++.++ |.+..+..-+.-.++.....+.-++. ....+....+.+..-+
T Consensus 16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~ 95 (345)
T KOG2234|consen 16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKV 95 (345)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHH
Confidence 3344444455555555666665554421 34555555555555555555443210 0111111122234444
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257 262 IYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRN 333 (383)
Q Consensus 262 ~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~ 333 (383)
..-++++.+.+.+++.++.+.++++..+...+..+-+.++++++++++++..||...++...|+.+.++...
T Consensus 96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence 455566888888999999999999999999999999999999999999999999999999999999985443
No 97
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.47 E-value=0.041 Score=49.53 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=112.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----CCCHHHHHHHHH
Q 042257 11 SHNAKPYLGVIFMQFCYSIMSVIAKLAL-NQGMSPYVLVAYRMVVATILIAPFAFVLERKTRP-----KMTLPIFAKIAL 84 (383)
Q Consensus 11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 84 (383)
.+...|++++....++=|..+...+..+ ...++++.+.+.-.++.+++-....+..+ ..++ +..++.++-+++
T Consensus 168 ~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg-~~~~av~F~~~hp~~~~Di~l 246 (327)
T KOG1581|consen 168 ENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQG-HLLPAVSFIKEHPDVAFDILL 246 (327)
T ss_pred CCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCC-CCchHHHHHHcChhHHHHHHH
Confidence 4567899999999999999988888776 34678999988888888887766544322 1111 234566677888
Q ss_pred HHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 85 VSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 85 ~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
.+.++ ++++.+-|+-++.-++-.-+.+.-+-=++..+++.++++.+++..| |.|+.+.+.|..+=..
T Consensus 247 ~s~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 247 YSTCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLEIL 313 (327)
T ss_pred HHHhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHHHH
Confidence 88888 8889988889988777777788888889999999999999999999 9999999999887554
No 98
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.42 E-value=0.008 Score=46.32 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH-HHHHHHHHH
Q 042257 198 AGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMG 276 (383)
Q Consensus 198 ~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 276 (383)
+-+++|++.+-+.||..+..++...- . + ...-... ++. .|-..+ ... ...+...|+
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~-~~~~~~~----Ll~--------------n~~y~i--pf~lNq~GSv~f~ 59 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-Q-LLQEIKF----LLL--------------NPKYII--PFLLNQSGSVLFF 59 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccch-H-H-HHHHHHH----HHH--------------hHHHHH--HHHHHHHHHHHHH
Confidence 34788999999999988876632221 1 1 1111111 111 111111 334 778888999
Q ss_pred HHHhccCccceeec-chhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH
Q 042257 277 WLMKRRGPVFVSSF-NPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYM 327 (383)
Q Consensus 277 ~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l 327 (383)
+.+.+.+-+.+.++ +.+.-+++++.++++.+|..+...++|++++++|+.+
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 99999999999998 5899999999998766666788899999999999865
No 99
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.26 E-value=0.017 Score=50.83 Aligned_cols=135 Identities=10% Similarity=-0.003 Sum_probs=81.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC--HHHHHHHHHHHH
Q 042257 12 HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSP--YVLVAYRMVVATILIAPFAFVLERKTRPKMT--LPIFAKIALVSL 87 (383)
Q Consensus 12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~ 87 (383)
+...+....+.+.++-+...+..+... +..+. ..-...-.....+.................+ ...-.......+
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~-k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKIL-KDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGL 160 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcc-cCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHH
Confidence 345666677777777777888877764 32221 1111111111111111111111111101100 000111223334
Q ss_pred HHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHH
Q 042257 88 FEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAM 154 (383)
Q Consensus 88 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ 154 (383)
++ +.+..+..+.++|.++...+....+.++++.+++.++++|+++..+ +.|+.+.+.|+.
T Consensus 161 ~~-a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~------~~g~~lV~~~~~ 220 (222)
T TIGR00803 161 LN-VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTF------YLGAILVFLATF 220 (222)
T ss_pred HH-HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHeeeE
Confidence 44 6777888999999999999999999999999999999999999998 999999888764
No 100
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=0.33 Score=39.46 Aligned_cols=137 Identities=13% Similarity=0.037 Sum_probs=79.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 042257 13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVI 92 (383)
Q Consensus 13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 92 (383)
....++..+++..+-..+..+.-.+....-+|....+..+..+++++..+.+...+........+..++.+.-|+++ +.
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lG-a~ 81 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLG-AI 81 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchh-hh
Confidence 34566777788888888777776653233359999999999999988888777333322221122223334445555 44
Q ss_pred HHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHH----hhcccccccccccchhhHHHHHHHHHHHH
Q 042257 93 SQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIF----RLEKVKIKSTHSQAKILGTIVTAGGAMCM 156 (383)
Q Consensus 93 ~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~----~~e~~~~~~~~~~~~~~gi~l~~~Gv~li 156 (383)
.-..........+++....+. .-+-+...++-.+= -+++++.. |++|+++.++|+.++
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~------r~lgi~L~l~gil~~ 144 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLP------RILGILLVLAGILLA 144 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHH------HHHHHHHHHHHHHHh
Confidence 444444455555555554433 33333333333322 12334444 599999999995554
No 101
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.47 E-value=0.088 Score=48.48 Aligned_cols=147 Identities=16% Similarity=0.056 Sum_probs=92.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHH--HhhhcCCCccceeccchhHHHHHHHH
Q 042257 188 DLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILT--LAIERGNTGIWLLHFDAKLLAVIYGG 265 (383)
Q Consensus 188 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g 265 (383)
+...|+++..+++++-+.+.+=.||. |+.+ .+.......+-..+..|.. ++..++..+.+...+...+....+.|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 45689999999999999999988774 4443 3333322222222223322 22222122223333444566667778
Q ss_pred HHHHHHHHHHHHHHhccCcc-ceeecchhHHHHHHHHHHHHhcc-------cccchhhhhHHHHHHHHHHhhhccCCCCC
Q 042257 266 FVSCTAYFIMGWLMKRRGPV-FVSSFNPLGMVIIAVLGSFFLAE-------KLYLGRIIGAVIIVIGLYMVLWGRNKDRS 337 (383)
Q Consensus 266 ~~~~~~~~~~~~a~~~~~~~-~~s~~~~~~pv~~~l~~~~~~~e-------~~~~~~~~G~~li~~gv~l~~~~~~~~~~ 337 (383)
++=+++...|..++|+++.+ -.++..-+..++..++--++.++ .-....++|.++.++|+.+..+....+++
T Consensus 81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~ 160 (344)
T PF06379_consen 81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEK 160 (344)
T ss_pred HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhh
Confidence 88778888999999999876 44555556666666665555432 12346789999999999998876554433
No 102
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=0.16 Score=46.15 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=108.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHHHHHHHhhhcC-----CCC-CCCHHHHHHHHHH
Q 042257 13 NAKPYLGVIFMQFCYSIMSVIAKLAL-NQGMSPYVLVAYRMVVATILIAPFAFVLERK-----TRP-KMTLPIFAKIALV 85 (383)
Q Consensus 13 ~~~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~ 85 (383)
...|+.++....+.-+...+..|... ..+..-+.+.++..+.+.+.+....+..+.. ..+ ......+....+.
T Consensus 155 ~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS 234 (314)
T KOG1444|consen 155 NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLS 234 (314)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence 34589999999999999999999875 3567788899999999999888777554321 111 2234556667777
Q ss_pred HHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 86 SLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 86 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
++++ .+-+.+.+++.+..++...++.....-..+.+...++.+++.++.. ++|+.++++|.++=..
T Consensus 235 cv~g-f~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n------~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 235 CVMG-FGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLN------VIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHH-HHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhh------hHHHHHHhhhhhHHhh
Confidence 7777 7777888899999999888888877777777777777889999888 9999999999888653
No 103
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.03 E-value=0.2 Score=43.15 Aligned_cols=138 Identities=12% Similarity=0.112 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCC----CCCCHHHHHHHHHHHHHH
Q 042257 15 KPYLGVIFMQFCYSIMSVIAKLAL-NQGMSPYVLVAYRMVVATILIAPFAFVLERKTR----PKMTLPIFAKIALVSLFE 89 (383)
Q Consensus 15 ~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~ 89 (383)
.|++++...++.-+..-...|.-. -.+.......++.-+.+.++++.+.+..+.+.. ...+.......++.|++.
T Consensus 155 ~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s 234 (309)
T COG5070 155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS 234 (309)
T ss_pred CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence 366777776666666655555432 145667888999999999999888776543321 123445566778888887
Q ss_pred HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 042257 90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLL 159 (383)
Q Consensus 90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~ 159 (383)
++-..|.-|+.+.++....+++..+.-.-..+.+.++++|+.+... +.++.++++...+-...
T Consensus 235 -vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~s------i~sillGflsg~iYava 297 (309)
T COG5070 235 -VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLS------IFSILLGFLSGAIYAVA 297 (309)
T ss_pred -hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHH------HHHHHHHHHHHHHHHHH
Confidence 7777888899999999999999999999999999999999999887 99999998887775543
No 104
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.013 Score=53.00 Aligned_cols=121 Identities=25% Similarity=0.265 Sum_probs=91.3
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHH
Q 042257 185 NEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYG 264 (383)
Q Consensus 185 ~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (383)
....+..|..+++.+.+..+....+.|+..++... . .. .. ......... ..++ +.
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~--------------~~--ra-~~gg~~yl~-~~~W---w~ 69 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----S--------------GL--RA-GEGGYGYLK-EPLW---WA 69 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHhh----h--------------cc--cc-cCCCcchhh-hHHH---HH
Confidence 45556789999999999999999998887666431 0 00 00 111111111 1111 23
Q ss_pred HHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhh
Q 042257 265 GFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLW 330 (383)
Q Consensus 265 g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~ 330 (383)
|++ ..+|..+.+.+....+++.++++..++.+.+.+++..+++|+++....+||++.++|..+...
T Consensus 70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 666 888888888899999999999999999999999999999999999999999999999876654
No 105
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.13 E-value=0.018 Score=48.33 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCC
Q 042257 270 TAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKD 335 (383)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~ 335 (383)
.+++.|..++++.+++.++.+...+-.+..+++++++++++...+++...+.+.|+++..+..+..
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence 347789999999999999999999999999999999999999999999999999999888765543
No 106
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.82 E-value=0.4 Score=41.65 Aligned_cols=133 Identities=11% Similarity=0.126 Sum_probs=93.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHH----------HHHhhhcCCCCCCCHHHH
Q 042257 12 HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMS--PYVLVAYRMVVATILIAP----------FAFVLERKTRPKMTLPIF 79 (383)
Q Consensus 12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~--~~~~~~~r~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 79 (383)
....|-++++++..+-|+........- .+.. .-...+.-.+-+.+.+-. ++.+..|. ...|
T Consensus 169 t~g~GElLL~lSL~mDGlTg~~Qdrir-a~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~Rh------P~~~ 241 (337)
T KOG1580|consen 169 TFGFGELLLILSLAMDGLTGSIQDRIR-ASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRH------PYVF 241 (337)
T ss_pred ccchHHHHHHHHHHhcccchhHHHHHH-HhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhc------cHHH
Confidence 345688899999888888888776542 2222 222222222333333322 22222221 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 80 AKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
.-+..+++.+ ++++.+.|.-..+-+|-.-+++..+--.|+.+.++++++.+++.+| |+|..+.+.|...=..
T Consensus 242 ~~l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 242 WDLTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhhHhh
Confidence 5566777777 8889999999999888888999999999999999999999999999 9999999999877443
No 107
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=92.83 E-value=0.69 Score=41.90 Aligned_cols=124 Identities=12% Similarity=0.166 Sum_probs=86.2
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhc-CCCccceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccee
Q 042257 210 QAFLLKSYPAELSLTALICFMSSVEGTILTLAIER-GNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVS 288 (383)
Q Consensus 210 ~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s 288 (383)
.+...++.+-|+..+.....+-.......-...+. .+...-...+......++-.|++++.--.+-++++++++.+..+
T Consensus 35 ~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYT 114 (349)
T KOG1443|consen 35 FKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYT 114 (349)
T ss_pred hhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeee
Confidence 33334445556777777766665555444443332 11111111122234444456666777788889999999999999
Q ss_pred ecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257 289 SFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRN 333 (383)
Q Consensus 289 ~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~ 333 (383)
+.-+..+++..+++.++-=|++++....=..+|-.|+++..+.+.
T Consensus 115 M~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT 159 (349)
T KOG1443|consen 115 MTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST 159 (349)
T ss_pred eccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence 999999999999999999999999988888888899888776543
No 108
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=91.43 E-value=2.7 Score=31.60 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Q 042257 17 YLGVIFMQFCYSIMSVIAKLALNQGMSP------YVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEP 90 (383)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~k~~~~~~~~~------~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 90 (383)
..-++...++||..+.+.|.. +.+++. ....++|-.-... ..++.+. .-.++
T Consensus 5 ~~~lvaVgllWG~Tnplirrg-s~g~~~v~~~~~k~~~~lqe~~tl~----------------l~w~Y~i----PFllN- 62 (125)
T KOG4831|consen 5 MDKLVAVGLLWGATNPLIRRG-SLGWDKVKSSSRKIMIALQEMKTLF----------------LNWEYLI----PFLLN- 62 (125)
T ss_pred HHHHHHHHHHHccccHHHHHH-HhhHhhccCchHHHHHHHHHHHHHH----------------HhHHHHH----HHHHH-
Confidence 345778889999999999987 344332 2222222221111 1223222 22223
Q ss_pred HHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHH
Q 042257 91 VISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCM 156 (383)
Q Consensus 91 ~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li 156 (383)
--+..+||.-+.+.+.+.+..+. ++.-.|+.+.+..+ +|+...+. .++|..+..+|+.+.
T Consensus 63 qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~-----a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 63 QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGL-----ALLGTSLIVFGIWLC 123 (125)
T ss_pred HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccce-----eehhhhHHhhhhhhe
Confidence 23467888999999999998886 66777888887776 55554443 388888888887664
No 109
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=91.13 E-value=0.18 Score=45.48 Aligned_cols=132 Identities=12% Similarity=0.069 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHH-HhhhcCC------Cc---cceeccchhHHHHHHHHH
Q 042257 197 AAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILT-LAIERGN------TG---IWLLHFDAKLLAVIYGGF 266 (383)
Q Consensus 197 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~------~~---~~~~~~~~~~~~~~~~g~ 266 (383)
+++.+||+..-...|-..++...| ..++|-..++.++...+. +-.+..+ .. .....+...+...+.-|+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 456778887777777665544322 234444444444333332 2222101 11 111122223444455566
Q ss_pred HHHHHHHHHHHHHhccCccceeecch-hHHHHHHHHHHHHhccccc--chhhhhHHHHHHHHHHhhh
Q 042257 267 VSCTAYFIMGWLMKRRGPVFVSSFNP-LGMVIIAVLGSFFLAEKLY--LGRIIGAVIIVIGLYMVLW 330 (383)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~l~~~~~~~e~~~--~~~~~G~~li~~gv~l~~~ 330 (383)
+--+++.+..+++...+.+..-++.. +..++++++.++ ++.+.+ ...+.|.+++++++++-..
T Consensus 81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence 67888999999999988766555543 455666777763 445544 3567788888888876554
No 110
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.71 E-value=0.85 Score=40.67 Aligned_cols=142 Identities=18% Similarity=0.129 Sum_probs=102.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHhhhcCC----CCC-CCHHHHHHHHHH
Q 042257 12 HNAKPYLGVIFMQFCYSIMSVIAKLALNQ-GMSPYVLVAYRMVVATILIAPFAFVLERKT----RPK-MTLPIFAKIALV 85 (383)
Q Consensus 12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~ 85 (383)
-...|.++.+.+.+.-++..+..|..+.. +-.-+.++++..+.+.++++|.....+.-. .+. ...+.|..+.+.
T Consensus 182 ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLs 261 (347)
T KOG1442|consen 182 LSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLS 261 (347)
T ss_pred cchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHH
Confidence 35689999999999999999999965422 234678899999999999999988754321 122 356778888888
Q ss_pred HHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257 86 SLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK 160 (383)
Q Consensus 86 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~ 160 (383)
|+++...++. ..+=++.++|-...+=...-...=.++++.+++|..+... |-+-++.+.|...-++-+
T Consensus 262 glfgF~mgyv-Tg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lw------wtsn~~vLvgs~~YT~vk 329 (347)
T KOG1442|consen 262 GLFGFAMGYV-TGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLW------WTSNIVVLVGSLAYTLVK 329 (347)
T ss_pred HHHHHHhhhe-eeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhe------eeeeEEEEehhHHHHHHH
Confidence 8888444433 3445566665554443444455557789999999999887 888888888888766544
No 111
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.25 E-value=3.7 Score=36.71 Aligned_cols=140 Identities=10% Similarity=0.070 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCC-----CCCCHHHHHHHHHHHH
Q 042257 14 AKPYLGVIFMQFCYSIMSVIAKLAL-NQGMSPYVLVAYRMVVATILIAPFAFVLERKTR-----PKMTLPIFAKIALVSL 87 (383)
Q Consensus 14 ~~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~ 87 (383)
..|+.+.-.+.++=+...-+....+ ...-+..+.+++.+.++.++++..+...+.-.. ...+++...+.++.+.
T Consensus 189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~ 268 (367)
T KOG1582|consen 189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL 268 (367)
T ss_pred eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH
Confidence 4577666666666666555554443 234567888999999999988877766543221 1245666666777666
Q ss_pred HHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257 88 FEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK 160 (383)
Q Consensus 88 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~ 160 (383)
.+ .++......-++.-++..++.+...--..+.+++++++.++++... ..+..+...|+++=...+
T Consensus 269 ~g-ylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy------~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 269 AG-YLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQY------VWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred Hh-HhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHH------hhhhHHHHHHHHhhcccC
Confidence 66 5555555555566788888888888888999999999999999887 888899999999876544
No 112
>PRK02237 hypothetical protein; Provisional
Probab=88.91 E-value=2 Score=32.51 Aligned_cols=48 Identities=10% Similarity=0.101 Sum_probs=41.2
Q ss_pred ceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257 286 FVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRN 333 (383)
Q Consensus 286 ~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~ 333 (383)
..+...-.-.+.++++++.+-|++|+...++|.++.++|+.++.+..+
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 455666777889999999999999999999999999999988776553
No 113
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=87.09 E-value=1.2 Score=33.59 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=39.8
Q ss_pred eeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257 287 VSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRN 333 (383)
Q Consensus 287 ~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~ 333 (383)
.+...-.-.+.++++++.+-+++|+...++|.++.+.|+.++.+.++
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 44555566788999999999999999999999999999988876554
No 114
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=86.57 E-value=0.86 Score=40.79 Aligned_cols=67 Identities=10% Similarity=0.157 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhc
Q 042257 265 GFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWG 331 (383)
Q Consensus 265 g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~ 331 (383)
+++-..+..+.+.++..++++...++.-...+++-+++.-+++..++..+|+|+..+.+|+..+...
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 4566677788889999999999999999999999999999999999999999999999999876654
No 115
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=83.99 E-value=0.14 Score=45.00 Aligned_cols=136 Identities=20% Similarity=0.161 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH
Q 042257 189 LTKGALLIAAGCFAWSCFIILQAFLLKS-YPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV 267 (383)
Q Consensus 189 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 267 (383)
...|..++=.=++|-......+..+.++ .+.|...++.....-+++-.+...+-.. .+ ...|..-+.++++
T Consensus 16 ~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~----~~----~~~~~hYilla~~ 87 (336)
T KOG2766|consen 16 TLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK----YI----KAKWRHYILLAFV 87 (336)
T ss_pred hhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH----HH----HHHHHHhhheeEE
Confidence 3444444444344444444444555554 4456777777666666666666654221 11 1134445555667
Q ss_pred HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257 268 SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR 332 (383)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~ 332 (383)
-.=++++...|.++++-+.+..+..-..+...+++|++++.+-...++.|..+.+.|+.+.....
T Consensus 88 DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 88 DVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred eecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 77778888899999999999999999999999999999999999999999999999998877544
No 116
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=83.51 E-value=3.5 Score=31.01 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhccCccceeecc-hhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257 268 SCTAYFIMGWLMKRRGPVFVSSFN-PLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV 328 (383)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~s~~~-~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~ 328 (383)
..++..+|+..+.+.+-+.+.++. ++...++.+.+..+-.|......+.|..++++|+.+.
T Consensus 62 NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 62 NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 667778888899999988766665 4688889999985444446778999999999998764
No 117
>PRK02237 hypothetical protein; Provisional
Probab=82.82 E-value=18 Score=27.50 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=36.9
Q ss_pred hhhHH-HhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 106 ATFTV-AMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 106 ~~~a~-~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
.+.+. .--....+...+..+.+-++|++..+ ++|..++++|+.++.+
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D------~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWD------WIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhH------HHhHHHHHHhHHHhee
Confidence 44443 33356666677888999999999999 9999999999998864
No 118
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=77.46 E-value=15 Score=27.84 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=40.0
Q ss_pred ccccchhhHH-HhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 101 MKYTTATFTV-AMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 101 l~~~~~~~a~-~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
++-.+.+.+. .--....+...+-.+.+-++|++..+ ++|..++++|+.++.+
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D------~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWD------WIGAAICLVGVAIILF 103 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHH------HHhHHHHHHhHHheEe
Confidence 3334444443 33366777778888999999999999 9999999999999874
No 119
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=76.85 E-value=0.79 Score=40.86 Aligned_cols=29 Identities=7% Similarity=0.104 Sum_probs=0.0
Q ss_pred cchhhHHHhhhhhHHHHHHHHH-HHhhccc
Q 042257 104 TTATFTVAMCNILPALTFLMAW-IFRLEKV 132 (383)
Q Consensus 104 ~~~~~a~~l~~~~pi~~~ll~~-~~~~e~~ 132 (383)
.+-+..++++++..++++++-. +++|+|+
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrL 76 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRL 76 (381)
T ss_dssp ------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444455666666555544433 3355544
No 120
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=75.67 E-value=31 Score=26.13 Aligned_cols=45 Identities=9% Similarity=0.004 Sum_probs=29.3
Q ss_pred chhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHH
Q 042257 105 TATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMC 155 (383)
Q Consensus 105 ~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l 155 (383)
++++--+++ -.+-...+.++++++||++++.. +.|.++.+.++..
T Consensus 60 s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~------l~af~~i~~av~f 105 (108)
T PF04342_consen 60 SLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNY------LWAFLCILGAVYF 105 (108)
T ss_pred CHHHHHHHHHHHhhheeHHHHHHHhCCCccHHH------HHHHHHHHHhhhe
Confidence 334433444 23333446778899999999997 8887777666554
No 121
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=74.51 E-value=56 Score=28.21 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=4.5
Q ss_pred HHhhccccc
Q 042257 126 IFRLEKVKI 134 (383)
Q Consensus 126 ~~~~e~~~~ 134 (383)
.+++.|.+.
T Consensus 195 ~~lkkk~~i 203 (206)
T PF06570_consen 195 FYLKKKYNI 203 (206)
T ss_pred HHHHHHhCC
Confidence 445555543
No 122
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=74.18 E-value=8.6 Score=28.93 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=40.1
Q ss_pred ceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257 286 FVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRN 333 (383)
Q Consensus 286 ~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~ 333 (383)
..+...-.-.+.++++.+++=+..|+...++|..+.++|+.++.+..+
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 445666677889999999999999999999999999999887776543
No 123
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=73.68 E-value=58 Score=28.00 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=18.9
Q ss_pred HHHHHHHhcccccchhhhhHHHHHHHH
Q 042257 299 AVLGSFFLAEKLYLGRIIGAVIIVIGL 325 (383)
Q Consensus 299 ~l~~~~~~~e~~~~~~~~G~~li~~gv 325 (383)
-.+|..++.+-.-+.+..|..+.++=+
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmI 159 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMV 159 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667778877788888887765433
No 124
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=70.61 E-value=1.7 Score=39.51 Aligned_cols=129 Identities=9% Similarity=0.086 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcC------CCC-------CCCHHHHHHHHHHH
Q 042257 20 VIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERK------TRP-------KMTLPIFAKIALVS 86 (383)
Q Consensus 20 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~~~~~~~g 86 (383)
|+++.+|||......|++ ++.....+..++-+.++.++..++..+.-.. ..+ ..+++.....+.-|
T Consensus 1 M~itmlcwGSW~nt~kL~-~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLA-ERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHH-HhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 467889999999999999 5655555567777777777665555443111 111 13445555455555
Q ss_pred HHHHHHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHH
Q 042257 87 LFEPVISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMC 155 (383)
Q Consensus 87 ~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l 155 (383)
++. .+++.+..+|+.+.+.+.+-++. ++.-+..+++-++ +..|.+... .-..|+.+.++.+++
T Consensus 80 vvf-nlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~----iLF~GV~cf~iAI~l 143 (336)
T PF07168_consen 80 VVF-NLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAE----ILFPGVACFLIAIIL 143 (336)
T ss_pred Hhh-hhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCce----EEEccHHHHHHHHHH
Confidence 554 78899999999999988887776 3333333333333 345554221 014455555554444
No 125
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=61.75 E-value=67 Score=26.44 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=34.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhc-----CCchhHHHHHHHHHHHHHHHHHH
Q 042257 187 EDLTKGALLIAAGCFAWSCFIILQAFLLKS-----YPAELSLTALICFMSSVEGTILT 239 (383)
Q Consensus 187 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~ 239 (383)
.+....+..++.+++.+++..++.....++ .+.|..-..+..+.+.+....++
T Consensus 128 ~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSlaFm 185 (193)
T COG4657 128 HNFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLAFM 185 (193)
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHc
Confidence 445678888899999999888887655444 23345545555555555554443
No 126
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.33 E-value=20 Score=26.66 Aligned_cols=33 Identities=21% Similarity=0.459 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcccccchhhhhHHHHHHHHHHhh
Q 042257 297 IIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVL 329 (383)
Q Consensus 297 ~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~ 329 (383)
+-+.++.+.++|++.+..+.|.+++..|+++..
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 334578899999999999999999999988764
No 127
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=60.23 E-value=8.8 Score=29.00 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=25.7
Q ss_pred HHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257 299 AVLGSFFLAEKLYLGRIIGAVIIVIGLYMV 328 (383)
Q Consensus 299 ~l~~~~~~~e~~~~~~~~G~~li~~gv~l~ 328 (383)
..++.++++|++++..+.|.++++++++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 456788999999999999999998887653
No 128
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=59.18 E-value=1.4e+02 Score=27.17 Aligned_cols=134 Identities=11% Similarity=0.118 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHh--------hhcCC--CCCC---CHHHH
Q 042257 14 AKPYLGVIFMQFCYSIMSVIAKLALN-QGMSPYVLVAYRMVVATILIAPFAFV--------LERKT--RPKM---TLPIF 79 (383)
Q Consensus 14 ~~g~l~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~--------~~~~~--~~~~---~~~~~ 79 (383)
..|+.++.++.++=+.+.+.....+. .+-++-+..|+......++++...-- .+.+. .+.. -...|
T Consensus 163 ~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~ 242 (330)
T KOG1583|consen 163 LIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMW 242 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHH
Confidence 46788888888888888888887663 46789999999999998887643210 01110 0111 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc----ccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHH
Q 042257 80 AKIALVSLFEPVISQNLYYTGMK----YTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMC 155 (383)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~~~al~----~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l 155 (383)
.+++. + ++.+..=..+.. .+++-.+++...+-=.+..+++.+.++.++++.. |+|..+.+.|.++
T Consensus 243 ~yLl~----n-~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h------~lGa~lVF~Gt~~ 311 (330)
T KOG1583|consen 243 VYLLF----N-VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWH------WLGAALVFFGTLL 311 (330)
T ss_pred HHHHH----H-HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHH------HHHHHHHHHHHHH
Confidence 22222 1 222222222221 2233444566666777888999999999999999 9999999999998
Q ss_pred HHh
Q 042257 156 MTL 158 (383)
Q Consensus 156 i~~ 158 (383)
...
T Consensus 312 fa~ 314 (330)
T KOG1583|consen 312 FAN 314 (330)
T ss_pred HHH
Confidence 764
No 129
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=54.63 E-value=63 Score=24.45 Aligned_cols=40 Identities=10% Similarity=0.226 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 113 CNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 113 ~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
-....+...+..+++-|.+++..+ ++|..++++|+.++.+
T Consensus 65 GGvyI~~sL~W~~~Vdg~~pdr~D------~~Ga~icl~G~~vil~ 104 (109)
T COG1742 65 GGVYIAASLAWLWVVDGVRPDRYD------WIGAAICLAGVAVILF 104 (109)
T ss_pred cchHHHHHHHHHHHHcCcCCcHHH------hhhHHHHHhceeeeEe
Confidence 355666777788888889999998 9999999999888764
No 130
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=53.65 E-value=2.5e+02 Score=28.26 Aligned_cols=15 Identities=13% Similarity=-0.148 Sum_probs=8.2
Q ss_pred cchhHHHHHHHHHHH
Q 042257 290 FNPLGMVIIAVLGSF 304 (383)
Q Consensus 290 ~~~~~pv~~~l~~~~ 304 (383)
.....|+-+.++|.+
T Consensus 352 ~~g~~~lGsll~G~l 366 (524)
T PF05977_consen 352 FFGGMPLGSLLWGFL 366 (524)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334456666666653
No 131
>PF15102 TMEM154: TMEM154 protein family
Probab=53.03 E-value=14 Score=29.77 Aligned_cols=24 Identities=8% Similarity=0.303 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHhhhccCCCCCC
Q 042257 315 IIGAVIIVIGLYMVLWGRNKDRSP 338 (383)
Q Consensus 315 ~~G~~li~~gv~l~~~~~~~~~~~ 338 (383)
+++.+|++..++++.+.|+|+.|.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccCC
Confidence 344445555566666665554443
No 132
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=52.12 E-value=1.2e+02 Score=30.61 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=10.2
Q ss_pred HHHHHHHHH---HHHHHHHHhhcCC
Q 042257 197 AAGCFAWSC---FIILQAFLLKSYP 218 (383)
Q Consensus 197 l~a~~~~a~---~~v~~k~~~~~~~ 218 (383)
+.+++|++- ...+.-|+.++.+
T Consensus 410 v~~a~~~~gEI~~~ffs~klI~kiG 434 (618)
T KOG3762|consen 410 VVSALCHAGEILFYFFSFKLIEKIG 434 (618)
T ss_pred ehhhhhccchHHHHHHHHHHHHHhc
Confidence 444554442 2233445566655
No 133
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=48.26 E-value=1.8e+02 Score=30.79 Aligned_cols=114 Identities=6% Similarity=0.033 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHhhcc------cc----chhh
Q 042257 42 MSPYVLVAYRMVVATILIAPFAFVLERKTRPK---MTLPIFAKIALVSLFEPVISQNLYYTGMK------YT----TATF 108 (383)
Q Consensus 42 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~al~------~~----~~~~ 108 (383)
++|+++.+...+.-.. .+.+.+-...+.+++ ...+.+......|.+........|++++. .. +...
T Consensus 625 l~~~~il~~~l~~d~~-~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (755)
T TIGR01647 625 FPPIMVVIIAILNDGT-IMTIAYDNVKPSKLPQRWNLREVFTMSTVLGIYLVISTFLLLAIALDTSFFIDKFGLQLLHGN 703 (755)
T ss_pred hhHHHHHHHHHHHhHh-HhhccCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccccccHhh
Confidence 6787777777666643 222221111111111 11234444556666664445555555553 11 2234
Q ss_pred HHHhhhhhHHHHHHHHHHHhh-cccccccccccchhhHHHHHHHHHHHH
Q 042257 109 TVAMCNILPALTFLMAWIFRL-EKVKIKSTHSQAKILGTIVTAGGAMCM 156 (383)
Q Consensus 109 a~~l~~~~pi~~~ll~~~~~~-e~~~~~~~~~~~~~~gi~l~~~Gv~li 156 (383)
.....++.-+++-.+-.+..| ++..+.++|++.-.++.++..+-..++
T Consensus 704 ~~t~~f~~~~~~~~~~~~~~r~~~~~~~~~p~~~l~~~~~~~~~~~~~~ 752 (755)
T TIGR01647 704 LQSLIYLQVSISGQATIFVTRTHGFFWSERPGKLLFIAFVIAQIIATFI 752 (755)
T ss_pred hHHHHHHHHHHHHHHHHheeccCCCCcccCCcHHHHHHHHHHHHHHHHH
Confidence 555556666666666665555 666677777777666666655544443
No 134
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=47.36 E-value=7.6 Score=31.18 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=20.1
Q ss_pred hccCccceeecchhHHHHHHHHHHHHhc
Q 042257 280 KRRGPVFVSSFNPLGMVIIAVLGSFFLA 307 (383)
Q Consensus 280 ~~~~~~~~s~~~~~~pv~~~l~~~~~~~ 307 (383)
..-+...++.+.|+.|.++++++.++.+
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~La~ 97 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAILAQ 97 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566778888889888888876533
No 135
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=45.72 E-value=6.8 Score=35.14 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCccceeecch
Q 042257 268 SCTAYFIMGWLMKRRGPVFVSSFNP 292 (383)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~s~~~~ 292 (383)
-+++.++|.+.+++.+++.-+++..
T Consensus 118 LaL~vW~Ym~lLr~~GAs~WtiLaF 142 (381)
T PF05297_consen 118 LALGVWFYMWLLRELGASFWTILAF 142 (381)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6677778888899999887665543
No 136
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=43.74 E-value=2.4e+02 Score=25.23 Aligned_cols=42 Identities=14% Similarity=-0.014 Sum_probs=26.3
Q ss_pred hccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHH
Q 042257 280 KRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVII 321 (383)
Q Consensus 280 ~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li 321 (383)
++.++......+.++=.+-++...+++.-.-+...-.++++.
T Consensus 117 ~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~~~~a~~~i~~ 158 (249)
T PF10225_consen 117 RYGPPVDPRSRNFVKWALQLIGLVLIYFSSQDPEFAFAAIIL 158 (249)
T ss_pred ccCCCccHhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 466777766666677677776666666666555544444433
No 137
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=40.87 E-value=2.7e+02 Score=25.07 Aligned_cols=116 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCHHHHHHHHHHHHHH
Q 042257 14 AKPYLGVIFMQFCYSIMSVIAKLALN--QGMSPYVLVAYRMVVATILIAPFAFVLE--RKTRPKMTLPIFAKIALVSLFE 89 (383)
Q Consensus 14 ~~g~l~~~~~~~~~~~~~~~~k~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~ 89 (383)
.+|.++++++ ++++.+.+.... + ++..|.....+-.+..+.+...++..++ |+.+..+-.-+....+.-+.+.
T Consensus 95 ing~ll~ll~--lyAlinAl~~l~-dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS 171 (314)
T COG3965 95 INGTLLALLC--LYALINALGSLL-DGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLS 171 (314)
T ss_pred hccHHHHHHH--HHHHHHHHHHHh-cCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccc
Q 042257 90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVK 133 (383)
Q Consensus 90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~ 133 (383)
..-...|..+........+-..-+.-|.+.++.+.++..-++.
T Consensus 172 -~al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg 214 (314)
T COG3965 172 -AALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLG 214 (314)
T ss_pred -HHHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHH
No 138
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=39.65 E-value=52 Score=26.28 Aligned_cols=16 Identities=25% Similarity=0.727 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHHHHhh
Q 042257 314 RIIGAVIIVIGLYMVL 329 (383)
Q Consensus 314 ~~~G~~li~~gv~l~~ 329 (383)
.++|..+.+.|++...
T Consensus 89 ~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 89 IIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666655444
No 139
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=38.94 E-value=1.5e+02 Score=25.30 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=42.7
Q ss_pred HHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccc
Q 042257 109 TVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEED 188 (383)
Q Consensus 109 a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (383)
.+++.+..-......-.+..||+++.. +.|.+...++..+...+ | +..+.
T Consensus 29 ~aliaA~~~a~~~~v~RL~r~~~~~~a-------~~gl~gV~i~a~~A~~t-G----------------------~A~~~ 78 (187)
T PF11361_consen 29 PALIAALAVAVVIVVWRLVRRESVQPA-------LSGLFGVAISAAIAWRT-G----------------------SAKDF 78 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHH-------HHHHHHHHHHHHHHHHH-C----------------------Chhhh
Confidence 345555555556666777788888755 66666655665555432 2 24445
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 042257 189 LTKGALLIAAGCFAWSCFIIL 209 (383)
Q Consensus 189 ~~~G~~~~l~a~~~~a~~~v~ 209 (383)
...|++.-...++.+....+.
T Consensus 79 Fl~gi~~n~~~~~~~l~S~lv 99 (187)
T PF11361_consen 79 FLPGIWTNAVYAVVFLVSVLV 99 (187)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 567777766666666655543
No 140
>PRK10666 ammonium transporter; Provisional
Probab=38.05 E-value=3.9e+02 Score=26.08 Aligned_cols=98 Identities=10% Similarity=-0.088 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc------cce--eccchhHHH
Q 042257 189 LTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTG------IWL--LHFDAKLLA 260 (383)
Q Consensus 189 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~--~~~~~~~~~ 260 (383)
.....+++.++++..-....+.|+.. +.+|+......-...+.+-.+...++... ... .+. ..-..+...
T Consensus 303 p~~A~iiG~vag~v~~~~~~~l~~~~-~iDD~~~a~~vHgv~Gi~G~l~~glfa~~-~~~~~~~~~g~~~~~ql~~Ql~g 380 (428)
T PRK10666 303 VGGALIIGVVAGLAGLWGVTMLKRWL-RVDDPCDVFGVHGVCGIVGCILTGIFAAS-SLGGVGYAEGVTMGHQVLVQLES 380 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCcCccHhhhHhHHHHHHHHHHhhch-hccCccccCccccHHHHHHHHHH
Confidence 34566666666665544333344322 44555444443333333333333333222 110 000 001123333
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcccee
Q 042257 261 VIYGGFVSCTAYFIMGWLMKRRGPVFVS 288 (383)
Q Consensus 261 ~~~~g~~~~~~~~~~~~a~~~~~~~~~s 288 (383)
++.....+++..++..+.+++....+++
T Consensus 381 ~~~~~~~~~~~t~ii~~il~~~~~lRvs 408 (428)
T PRK10666 381 IAITIVWSGVVAFIGYKLADLTVGLRVP 408 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcCC
Confidence 3333223555556667777776655543
No 141
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=37.85 E-value=47 Score=22.83 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=15.6
Q ss_pred hhhhHHHHHHHHHHhhhccCCCC
Q 042257 314 RIIGAVIIVIGLYMVLWGRNKDR 336 (383)
Q Consensus 314 ~~~G~~li~~gv~l~~~~~~~~~ 336 (383)
-++++++++.|.+++....++..
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 45777888888877776555433
No 142
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=37.48 E-value=2.6e+02 Score=23.78 Aligned_cols=74 Identities=11% Similarity=-0.035 Sum_probs=43.3
Q ss_pred HHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHH
Q 042257 122 LMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCF 201 (383)
Q Consensus 122 ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~ 201 (383)
++-.++.+-+-+..+||+.+|.+.......-+.+.+..-... . ...-......+.+.+++++
T Consensus 143 ~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~---------l---------PtslN~~L~pi~l~IiGav 204 (226)
T COG4858 143 IMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMIATVF---------L---------PTSLNPQLPPIALTIIGAV 204 (226)
T ss_pred HHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHHhh---------C---------CCcCCcCCchHHHHHHHHH
Confidence 344455666667788888888776655444433332211000 0 0122233457788899999
Q ss_pred HHHHHHHHHHHH
Q 042257 202 AWSCFIILQAFL 213 (383)
Q Consensus 202 ~~a~~~v~~k~~ 213 (383)
..|+...+.|+.
T Consensus 205 ~lalRfylkkk~ 216 (226)
T COG4858 205 ILALRFYLKKKK 216 (226)
T ss_pred HHHHHHHHHHhh
Confidence 999888776654
No 143
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.62 E-value=1.9e+02 Score=21.68 Aligned_cols=32 Identities=6% Similarity=0.125 Sum_probs=25.7
Q ss_pred HHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHH
Q 042257 120 TFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMT 157 (383)
Q Consensus 120 ~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 157 (383)
-+.++.+.+||++++.. +.+..+...|+.++.
T Consensus 83 Fv~Fsvfyl~epl~~~~------l~a~~~i~gav~fiF 114 (116)
T COG3169 83 FVPFSVFYLKEPLRWNY------LWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHcCcchHHH------HHHHHHHHHHHHHhc
Confidence 35678899999999998 888887777776653
No 144
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=34.81 E-value=2.5e+02 Score=23.23 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhccc-ccchhhhhHHHHHHHHHHhh
Q 042257 268 SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEK-LYLGRIIGAVIIVIGLYMVL 329 (383)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~-~~~~~~~G~~li~~gv~l~~ 329 (383)
+..++..|...-....+-....+..++-+....++.++++++ +....+.+..+-++..++..
T Consensus 61 ~iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~i 123 (161)
T COG3476 61 GISAYLVWEKGPGQGTSWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLTI 123 (161)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHH
Confidence 444555555444443333344444488899999999999985 77777766666554444433
No 145
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.16 E-value=3.1e+02 Score=25.92 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHh-h-hcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 042257 26 CYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFV-L-ERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKY 103 (383)
Q Consensus 26 ~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~ 103 (383)
.|+.+.-+.|.+. ++..-.......++++-++...+.-+ . .+..++..++..-.....+- .++..+.|.+.++
T Consensus 200 gWs~slY~i~ql~-~nLq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~RS~~ilmWtLq----li~lvl~Yfsvq~ 274 (452)
T KOG3817|consen 200 GWSISLYVIKQLA-DNLQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQTILMWTLQ----LIGLVLAYFSVQH 274 (452)
T ss_pred cchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHH----HHHHHHHHHhccc
Confidence 4666666777664 66666666666666655544322211 1 12223443443322222223 3345567778888
Q ss_pred cchhhHHHhh
Q 042257 104 TTATFTVAMC 113 (383)
Q Consensus 104 ~~~~~a~~l~ 113 (383)
..++.+.+|.
T Consensus 275 p~~a~A~iI~ 284 (452)
T KOG3817|consen 275 PSAAIAAIIM 284 (452)
T ss_pred HHHHHHHHHH
Confidence 8887765544
No 146
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=33.44 E-value=4.1e+02 Score=26.03 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=26.9
Q ss_pred chhHHHHHHHHHHHHhc-ccccchhhhhHHHHHHHHHHhhhccCCCC
Q 042257 291 NPLGMVIIAVLGSFFLA-EKLYLGRIIGAVIIVIGLYMVLWGRNKDR 336 (383)
Q Consensus 291 ~~~~pv~~~l~~~~~~~-e~~~~~~~~G~~li~~gv~l~~~~~~~~~ 336 (383)
..+-|+++.+ +++.++ ..-...-..|++.+++|+++..+.|.+++
T Consensus 166 Gal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 166 GALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred cchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3444555544 544443 33344456778888888888777666543
No 147
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=33.12 E-value=53 Score=22.10 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 042257 142 KILGTIVTAGGAMCMTLL 159 (383)
Q Consensus 142 ~~~gi~l~~~Gv~li~~~ 159 (383)
|++|+++.+.|++++.+.
T Consensus 1 kiigi~Llv~GivLl~~G 18 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYFG 18 (59)
T ss_pred CeeeehHHHHHHHHHHhh
Confidence 478999999999998753
No 148
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=32.38 E-value=6.4e+02 Score=26.82 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=28.7
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHH
Q 042257 106 ATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCM 156 (383)
Q Consensus 106 ~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li 156 (383)
.+.+.++..+.|+-.+.++.+...+|.+... +.+.+-.++|.+-+
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~~~~~------~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKGGDKA------FFSALGVLLGAISI 54 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcccchH------HHHHHHHHHHHHHh
Confidence 4566778888998888888887666643332 44444444555443
No 149
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=31.35 E-value=1.6e+02 Score=19.40 Aligned_cols=44 Identities=25% Similarity=0.362 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042257 143 ILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKS 216 (383)
Q Consensus 143 ~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~ 216 (383)
++|..+.++|++++... | .|.+..+++-...|......|+..+.
T Consensus 6 v~G~~lv~~Gii~~~lP-G-----------------------------pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 6 VLGWVLVVAGIIMLPLP-G-----------------------------PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hHHHHHHHHHHHhhcCC-C-----------------------------CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 78888889998887631 1 36677777777888888888777654
No 150
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=30.50 E-value=2.9e+02 Score=22.34 Aligned_cols=29 Identities=7% Similarity=0.138 Sum_probs=24.2
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 042257 185 NEEDLTKGALLIAAGCFAWSCFIILQAFL 213 (383)
Q Consensus 185 ~~~~~~~G~~~~l~a~~~~a~~~v~~k~~ 213 (383)
.+.+.....+..+++++.|.-|...+||.
T Consensus 115 ~d~~~i~~l~~~li~a~IwipYf~~S~RV 143 (149)
T PF10754_consen 115 IDAEAIRELLRSLIAAAIWIPYFLRSKRV 143 (149)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 34455678999999999999999998885
No 151
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=29.65 E-value=2.4e+02 Score=20.97 Aligned_cols=60 Identities=17% Similarity=0.028 Sum_probs=33.3
Q ss_pred HHHHhccCccceeecchhHHHHHHHHHHHH---hccc-ccchhhhhHHHHHHHHHHhhhccCCC
Q 042257 276 GWLMKRRGPVFVSSFNPLGMVIIAVLGSFF---LAEK-LYLGRIIGAVIIVIGLYMVLWGRNKD 335 (383)
Q Consensus 276 ~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~---~~e~-~~~~~~~G~~li~~gv~l~~~~~~~~ 335 (383)
..++++++....-.+-.++.+.+++++.+. .++. +-...|.|...-+.+..+.....+|.
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~ 85 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRS 85 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhh
Confidence 556677665455555556666666665542 2222 22334777766666666665544443
No 152
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=29.40 E-value=5.8e+02 Score=25.43 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=13.6
Q ss_pred HHHhhhhhHHHHHHHHHH
Q 042257 109 TVAMCNILPALTFLMAWI 126 (383)
Q Consensus 109 a~~l~~~~pi~~~ll~~~ 126 (383)
++-+++++|+++.+++.+
T Consensus 310 ~~~~qslNp~~ii~l~P~ 327 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVF 327 (493)
T ss_pred HHHHHhHhHHHHHHHHHH
Confidence 466778889888877764
No 153
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=28.74 E-value=1.6e+02 Score=22.89 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHH
Q 042257 143 ILGTIVTAGGAMCMT 157 (383)
Q Consensus 143 ~~gi~l~~~Gv~li~ 157 (383)
++|.++.++|+++..
T Consensus 52 i~G~~li~~g~l~~~ 66 (115)
T PF05915_consen 52 IFGTVLIIIGLLLFF 66 (115)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555555444
No 154
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=28.50 E-value=4.7e+02 Score=24.09 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHH
Q 042257 143 ILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSC 205 (383)
Q Consensus 143 ~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~ 205 (383)
+.++.++..|+..+...-. .........+..+..++.+.+..
T Consensus 7 ~f~~~mGtg~l~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~~ 48 (330)
T PF03595_consen 7 WFGMVMGTGGLSNLLYLLP---------------------YHFGGLAILSEVLFILALILFLV 48 (330)
T ss_dssp GGHHHHHHHHHHHHHHTTT---------------------TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HhccchhHHHHHHHHHHHHHHHH
Confidence 8899999999888763111 12344455677777777766666
No 155
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=26.57 E-value=3.7e+02 Score=22.15 Aligned_cols=79 Identities=14% Similarity=0.068 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc--h
Q 042257 143 ILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPA--E 220 (383)
Q Consensus 143 ~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~--~ 220 (383)
-++++.++.|.=++...+- + + +......+..|..+.+++.+.-+.+....--+.++.-. .
T Consensus 92 slAVV~AIFGLElLmvSQv-----------c------E-d~~SrrKWamGs~LlLvsfvlSs~GllsFviLL~~~vtl~G 153 (184)
T PF15108_consen 92 SLAVVVAIFGLELLMVSQV-----------C------E-DAHSRRKWAMGSVLLLVSFVLSSGGLLSFVILLRNQVTLIG 153 (184)
T ss_pred HHHHHHHHHhHHHHHHHHH-----------H------h-cchhhhhhhhhhHHHHHHHHHhcccHHHHHHHHhcchhhhh
Confidence 5667777888766654321 0 0 01345566789888888877766555444444444321 3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 042257 221 LSLTALICFMSSVEGTILT 239 (383)
Q Consensus 221 ~~~~~~~~~~~~i~~~~~~ 239 (383)
.++++|.-+.+..+++.-+
T Consensus 154 FTL~fWCeFtAsFLfFLN~ 172 (184)
T PF15108_consen 154 FTLMFWCEFTASFLFFLNG 172 (184)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 7888888888877766544
No 156
>PHA03049 IMV membrane protein; Provisional
Probab=26.53 E-value=1.1e+02 Score=21.06 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHHhhhccCCCCC
Q 042257 314 RIIGAVIIVIGLYMVLWGRNKDRS 337 (383)
Q Consensus 314 ~~~G~~li~~gv~l~~~~~~~~~~ 337 (383)
.++++++++.|.+++...+++...
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~~~ 29 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKTTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 356777778888777765554433
No 157
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=26.45 E-value=5.7e+02 Score=24.33 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=9.5
Q ss_pred HHHHHHHHhhccccc
Q 042257 120 TFLMAWIFRLEKVKI 134 (383)
Q Consensus 120 ~~ll~~~~~~e~~~~ 134 (383)
.+++..+++|-|..-
T Consensus 3 ~vvl~~I~~GaR~GG 17 (364)
T PF03605_consen 3 IVVLGAIFLGARLGG 17 (364)
T ss_pred hHHHHHHHHhhcccc
Confidence 356667777776643
No 158
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=26.38 E-value=6.1e+02 Score=24.63 Aligned_cols=6 Identities=0% Similarity=-0.391 Sum_probs=2.3
Q ss_pred CCChHH
Q 042257 41 GMSPYV 46 (383)
Q Consensus 41 ~~~~~~ 46 (383)
+.++..
T Consensus 50 g~s~~~ 55 (455)
T TIGR00892 50 QATYSE 55 (455)
T ss_pred CcchhH
Confidence 334333
No 159
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=25.43 E-value=78 Score=25.23 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=26.4
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042257 184 NNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSY 217 (383)
Q Consensus 184 ~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~ 217 (383)
-+-.+..+|.++.-.=.+.|++|.++.|.+-++.
T Consensus 99 lGlsn~~LgwIL~gVf~lIWslY~~~~~~l~ede 132 (138)
T PF07123_consen 99 LGLSNNLLGWILLGVFGLIWSLYFVYTSTLDEDE 132 (138)
T ss_pred ccccCchhHHHHHHHHHHHHHHHHhhccccCCCc
Confidence 4556667888888888899999999988865443
No 160
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=24.25 E-value=31 Score=27.51 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=16.0
Q ss_pred ccceeecchhHHHHHHHHHHHH
Q 042257 284 PVFVSSFNPLGMVIIAVLGSFF 305 (383)
Q Consensus 284 ~~~~s~~~~~~pv~~~l~~~~~ 305 (383)
..+.+.+.|+-|++.++.+.++
T Consensus 67 ~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 67 LLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888753
No 161
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=23.91 E-value=4.5e+02 Score=22.28 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=22.8
Q ss_pred HHHHHHHhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257 299 AVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRN 333 (383)
Q Consensus 299 ~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~ 333 (383)
-.+|..++.|-.-+.+..|..+.++=+......++
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~~ 166 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLVAMIGAIVLTHD 166 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34467778888888889998877644444444333
No 162
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=23.74 E-value=8.3e+02 Score=26.64 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHH
Q 042257 15 KPYLGVIFMQFCYSIMSVIAKLALN--QGMSPYVLVAYRMVVATILIAPFAF 64 (383)
Q Consensus 15 ~g~l~~~~~~~~~~~~~~~~k~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~ 64 (383)
+-+.+.+...+.+.+..++.-.... ..+.|.+++++..+...+..+.+..
T Consensus 703 k~i~~~l~~n~~~~~~~~~~~~~~~~~~p~~~~qll~inll~d~~pa~~L~~ 754 (917)
T COG0474 703 KFILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGV 754 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhhhheeec
Confidence 3455555555555555544444421 2367888988888888765554433
No 163
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=23.59 E-value=6.8e+02 Score=24.25 Aligned_cols=22 Identities=5% Similarity=-0.058 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 042257 82 IALVSLFEPVISQNLYYTGMKY 103 (383)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~al~~ 103 (383)
+..+|..-.-.++..|+.+-..
T Consensus 199 ~~~lGa~lLWfGWfGFN~GSal 220 (409)
T COG0004 199 LVVLGAALLWFGWFGFNAGSAL 220 (409)
T ss_pred HHHHHHHHHHHHHccCCccchh
Confidence 3444544435556655544433
No 164
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=23.45 E-value=4.5e+02 Score=22.14 Aligned_cols=51 Identities=6% Similarity=-0.064 Sum_probs=32.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhc
Q 042257 13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLER 68 (383)
Q Consensus 13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 68 (383)
........+++++.+++++.+-..+. -.++-.+..++..++++....|...
T Consensus 78 ~~~~~~a~lv~al~fafS~sfW~~Av-----~aEVYal~~l~~al~~~l~l~w~~~ 128 (178)
T PF11028_consen 78 TIAILGAGLVGALAFAFSDSFWFQAV-----EAEVYALSSLFTALLLWLLLKWERE 128 (178)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556777888888888887777774 2344555555666666666655433
No 165
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=23.18 E-value=1.4e+02 Score=25.69 Aligned_cols=16 Identities=0% Similarity=-0.189 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhhccC
Q 042257 318 AVIIVIGLYMVLWGRN 333 (383)
Q Consensus 318 ~~li~~gv~l~~~~~~ 333 (383)
+++++++...|...++
T Consensus 112 lLla~~~~~~Y~~~~R 127 (202)
T PF06365_consen 112 LLLAILLGAGYCCHQR 127 (202)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4555555554443333
No 166
>PF15471 TMEM171: Transmembrane protein family 171
Probab=23.10 E-value=85 Score=28.13 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=16.4
Q ss_pred chhhhhHHHHHHHHHHhhhc
Q 042257 312 LGRIIGAVIIVIGLYMVLWG 331 (383)
Q Consensus 312 ~~~~~G~~li~~gv~l~~~~ 331 (383)
..|+.|-++++.|++.....
T Consensus 161 slQImGPlIVl~GLCFFVVA 180 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVA 180 (319)
T ss_pred ehhhhhhHHHHHhhhhhhee
Confidence 57899999999998776643
No 167
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=22.40 E-value=70 Score=19.62 Aligned_cols=18 Identities=39% Similarity=1.067 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHhhhccC
Q 042257 316 IGAVIIVIGLYMVLWGRN 333 (383)
Q Consensus 316 ~G~~li~~gv~l~~~~~~ 333 (383)
+|..+++++.+++.|.++
T Consensus 21 V~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred hHHHHHHHHHHhheEEec
Confidence 455555666666655544
No 168
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=22.32 E-value=4.9e+02 Score=22.16 Aligned_cols=91 Identities=12% Similarity=0.048 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042257 16 PYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQN 95 (383)
Q Consensus 16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (383)
+++..=+.+++-|++..+.+-+ ....-...+..-...++.......+..+.+.-...+.. +++.+...... .+-+.
T Consensus 101 sLl~lg~~aLlsgitaff~~nA--~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~-~~K~~lv~~~s-m~lWi 176 (226)
T COG4858 101 SLLFLGAMALLSGITAFFQKNA--QVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPG-TWKYLLVAVLS-MLLWI 176 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCc-hHHHHHHHHHH-HHHHH
Confidence 4445555566667777777776 34554444444444444444333332211110011112 22233333333 33344
Q ss_pred HHHhhccccchhhHH
Q 042257 96 LYYTGMKYTTATFTV 110 (383)
Q Consensus 96 ~~~~al~~~~~~~a~ 110 (383)
+.+.+-..+|++..-
T Consensus 177 ~v~i~t~~lPtslN~ 191 (226)
T COG4858 177 AVMIATVFLPTSLNP 191 (226)
T ss_pred HHHHHHhhCCCcCCc
Confidence 445666667766553
No 169
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=22.30 E-value=65 Score=23.45 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=21.4
Q ss_pred cccchhhhhHHHHHHHHHHhhhccCCCC
Q 042257 309 KLYLGRIIGAVIIVIGLYMVLWGRNKDR 336 (383)
Q Consensus 309 ~~~~~~~~G~~li~~gv~l~~~~~~~~~ 336 (383)
..++..++|..++++|..++..+..+++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pe 31 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPE 31 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 3577889999999999988876555443
No 170
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=22.26 E-value=7.1e+02 Score=23.96 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 042257 80 AKIALVSLFEPVISQNLYYTGMK 102 (383)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~~~al~ 102 (383)
..+..+|.+....++..|+-+-.
T Consensus 190 ~~~~~lG~~lLw~gW~gFN~gs~ 212 (399)
T PF00909_consen 190 PPLAMLGTLLLWFGWFGFNAGSA 212 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHhhhhHHHHHHHhcccccccc
Confidence 44566676665667777774443
No 171
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=21.13 E-value=38 Score=27.81 Aligned_cols=69 Identities=7% Similarity=-0.086 Sum_probs=0.0
Q ss_pred HHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 042257 278 LMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKDRSPSKSDNNEVT 347 (383)
Q Consensus 278 a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~~~~~~~~~~~~~ 347 (383)
.+..-...+.+.+.|+-|++.++.+. .+++.+.......++..++|..+....-++..++.+++...++
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga-~l~~~~~~~e~~~~~~~~~g~~~g~~~~r~~~~~~~~~~~~~P 136 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGA-ALFQLLFGSDLAALCGALLGGVGGFLLARGLSRKLAARAAYQP 136 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCce
No 172
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=20.75 E-value=5.6e+02 Score=25.00 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHH
Q 042257 85 VSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMT 157 (383)
Q Consensus 85 ~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 157 (383)
.|+++ .....+.++++.+.+.+.+.++....-+.-.++ |-+.+.. +..-+.|++..++|..+..
T Consensus 260 pg~iG-~i~LlL~f~g~~~~~~~~~gllLiilG~iLiv~------E~~~p~f--Gvigl~Gii~~iiG~~~L~ 323 (436)
T COG1030 260 PGIIG-AILLLLGFYGLLFLGINWAGLLLIILGAILIVA------EAFVPGF--GVIGLLGIILFIIGLLLLF 323 (436)
T ss_pred hHHHH-HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH------HHhcccc--hHHHHHHHHHHHHhhhhcc
Confidence 46666 666778888888888887666544333333333 3333320 1111556666666666654
No 173
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.57 E-value=72 Score=25.05 Aligned_cols=8 Identities=25% Similarity=0.600 Sum_probs=3.1
Q ss_pred hhHHHHHH
Q 042257 316 IGAVIIVI 323 (383)
Q Consensus 316 ~G~~li~~ 323 (383)
+|++++++
T Consensus 75 aGvIg~Il 82 (122)
T PF01102_consen 75 AGVIGIIL 82 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34433333
No 174
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=20.41 E-value=8.4e+02 Score=24.12 Aligned_cols=25 Identities=0% Similarity=0.185 Sum_probs=19.9
Q ss_pred ccchhhhhHHHHHHHHHHhhhccCC
Q 042257 310 LYLGRIIGAVIIVIGLYMVLWGRNK 334 (383)
Q Consensus 310 ~~~~~~~G~~li~~gv~l~~~~~~~ 334 (383)
++..|++.+.++++|++++.+.+++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~ 278 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKG 278 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6788999999999998877665443
No 175
>PF09529 Intg_mem_TP0381: Integral membrane protein (intg_mem_TP0381); InterPro: IPR011737 This entry represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=20.11 E-value=5.8e+02 Score=22.10 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=32.9
Q ss_pred HHHHHHHHhhccccchhhHHHhhhhh-HHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 042257 91 VISQNLYYTGMKYTTATFTVAMCNIL-PALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLL 159 (383)
Q Consensus 91 ~~~~~~~~~al~~~~~~~a~~l~~~~-pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~ 159 (383)
-+....++...++.+..+.-++.-+. ..+...+..+..+++. .+ .. ...++.|.+.....
T Consensus 52 ~i~~~~~~~~~~~~~~~e~LPLhlC~i~~~~~~l~l~~k~~~~--~~------~~-~~~gi~Gai~Ali~ 112 (225)
T PF09529_consen 52 EIILYIWYIYIGYFSLWESLPLHLCRIAMILAALALITKKKKL--FE------YF-YFWGIIGAIQALIT 112 (225)
T ss_pred HHHHHHHHHhcCCCchhccCCchhhhHHHHHHHHHHHcCcHHH--HH------HH-HHHHHHHHHHHeee
Confidence 44555566667777888877777444 3333344444433332 32 43 35677676665543
Done!