Query 042257
Match_columns 383
No_of_seqs 183 out of 1737
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 07:16:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 4.5E-10 1.5E-14 89.2 6.1 69 264-332 35-105 (137)
2 3b5d_A Multidrug transporter E 98.7 2.1E-07 7.3E-12 71.2 12.0 69 84-158 34-103 (110)
3 2i68_A Protein EMRE; transmemb 98.7 6.4E-08 2.2E-12 76.8 8.3 70 84-159 34-104 (137)
4 3b5d_A Multidrug transporter E 98.6 1.3E-07 4.4E-12 72.4 7.8 69 264-332 35-105 (110)
5 3rko_J NADH-quinone oxidoreduc 57.6 75 0.0026 25.8 12.6 26 299-324 127-152 (184)
6 3l1l_A Arginine/agmatine antip 46.2 92 0.0031 28.6 9.4 46 292-337 388-433 (445)
7 1pw4_A Glycerol-3-phosphate tr 31.9 2.8E+02 0.0096 24.8 21.0 37 20-56 95-131 (451)
8 2b2h_A AMT-1, ammonium transpo 28.2 3.5E+02 0.012 24.8 18.4 48 190-239 270-317 (399)
9 4djk_A Probable glutamate/gamm 20.7 5.1E+02 0.017 24.0 11.3 17 316-332 450-466 (511)
10 2jwa_A Receptor tyrosine-prote 16.8 64 0.0022 19.4 1.5 23 318-340 22-44 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.00 E-value=4.5e-10 Score=89.21 Aligned_cols=69 Identities=20% Similarity=0.434 Sum_probs=52.8
Q ss_pred HHHH-HHHHHHHHHHHHhccCccceeec-chhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257 264 GGFV-SCTAYFIMGWLMKRRGPVFVSSF-NPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR 332 (383)
Q Consensus 264 ~g~~-~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~ 332 (383)
++++ ++++++++.+++++.+++.+.++ ..+.|++++++++++++|++++.+++|+++|++|+++....+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4556 99999999999999999999998 899999999999999999999999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.71 E-value=2.1e-07 Score=71.19 Aligned_cols=69 Identities=17% Similarity=0.317 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHh-hhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257 84 LVSLFEPVISQNLYYTGMKYTTATFTVAM-CNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL 158 (383)
Q Consensus 84 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 158 (383)
+.+++...+++.++..++++.|.+.+..+ ..+.|+++.+++++++||+++..+ ++|+.+.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 45666668899999999999999999998 799999999999999999999998 9999999999999874
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.67 E-value=6.4e-08 Score=76.77 Aligned_cols=70 Identities=19% Similarity=0.332 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHh-hhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 042257 84 LVSLFEPVISQNLYYTGMKYTTATFTVAM-CNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLL 159 (383)
Q Consensus 84 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~ 159 (383)
+.+++...+++.++.+++++.|++.+..+ .++.|++++++++++++|+++..+ ++|+++.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhcC
Confidence 45666778999999999999999999999 799999999999999999999998 99999999999998753
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.60 E-value=1.3e-07 Score=72.41 Aligned_cols=69 Identities=20% Similarity=0.434 Sum_probs=63.1
Q ss_pred HHHH-HHHHHHHHHHHHhccCccceeec-chhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257 264 GGFV-SCTAYFIMGWLMKRRGPVFVSSF-NPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR 332 (383)
Q Consensus 264 ~g~~-~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~ 332 (383)
.+++ .+++++++.+++|+.+.+.+.++ ..+.|+++.++++++++|+++..+++|+++|++|+++....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3455 88999999999999999999888 899999999999999999999999999999999999887643
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=57.64 E-value=75 Score=25.78 Aligned_cols=26 Identities=4% Similarity=0.054 Sum_probs=20.3
Q ss_pred HHHHHHHhcccccchhhhhHHHHHHH
Q 042257 299 AVLGSFFLAEKLYLGRIIGAVIIVIG 324 (383)
Q Consensus 299 ~l~~~~~~~e~~~~~~~~G~~li~~g 324 (383)
--+|..++++-.-+.+..+..+.++=
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAm 152 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGL 152 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788998889999998887543
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=46.16 E-value=92 Score=28.64 Aligned_cols=46 Identities=9% Similarity=-0.094 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCCCC
Q 042257 292 PLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKDRS 337 (383)
Q Consensus 292 ~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~~~ 337 (383)
..-++++.+...+..-.......+.|.++++.|+.++.+.++++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 388 LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3444555554444332222234566788888888887766655433
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=31.95 E-value=2.8e+02 Score=24.84 Aligned_cols=37 Identities=5% Similarity=-0.122 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 042257 20 VIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVAT 56 (383)
Q Consensus 20 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~ 56 (383)
++++.++++...+..-.......+...+...|.+.+.
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 131 (451)
T 1pw4_A 95 LPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW 131 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 3344445555444444310001123445555665554
No 8
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=28.16 E-value=3.5e+02 Score=24.80 Aligned_cols=48 Identities=4% Similarity=-0.143 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHH
Q 042257 190 TKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILT 239 (383)
Q Consensus 190 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 239 (383)
.-..++.+++++..-....+.+|+ +.+|+......-...+..-.+...
T Consensus 270 ~~A~iiG~iag~i~~~~~~l~~kl--~iDD~l~a~~vHgv~Gi~G~l~~g 317 (399)
T 2b2h_A 270 KGAIVIGLVAGIVCYLAMDFRIKK--KIDESLDAWAIHGIGGLWGSVAVG 317 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--TCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCceeccchhhHHHHHHHH
Confidence 345556666655544444333343 445555444443333333333333
No 9
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=20.66 E-value=5.1e+02 Score=23.97 Aligned_cols=17 Identities=18% Similarity=0.507 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHhhhcc
Q 042257 316 IGAVIIVIGLYMVLWGR 332 (383)
Q Consensus 316 ~G~~li~~gv~l~~~~~ 332 (383)
.+..+++.++..+.+.+
T Consensus 450 ~~~~~~~~~i~~~~~~~ 466 (511)
T 4djk_A 450 VVSFLVVLALPFILYAV 466 (511)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=16.84 E-value=64 Score=19.40 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhccCCCCCCCC
Q 042257 318 AVIIVIGLYMVLWGRNKDRSPSK 340 (383)
Q Consensus 318 ~~li~~gv~l~~~~~~~~~~~~~ 340 (383)
.++++++..+..+.++|+.++++
T Consensus 22 ll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 22 LLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHhheehhhhhccC
Done!