Query 042257
Match_columns 383
No_of_seqs 183 out of 1737
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 07:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042257.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042257hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 22.6 42 0.003 16.0 2.7 17 191-207 3-19 (27)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 12.9 3.2E+02 0.023 21.9 21.5 14 272-285 362-375 (447)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 10.2 4.3E+02 0.031 21.8 22.3 24 82-105 198-221 (383)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 8.6 4.5E+02 0.033 20.8 15.6 38 200-238 69-106 (447)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 6.5 1.7E+02 0.012 14.0 2.1 13 299-311 16-28 (30)
6 d1q90r_ f.23.12.1 (R:) ISP sub 6.0 2.3E+02 0.017 15.0 2.9 26 72-97 5-30 (39)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 5.7 2.2E+02 0.016 14.6 3.5 23 185-207 13-35 (37)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 4.3 2.2E+02 0.016 18.0 2.2 18 319-336 29-46 (91)
9 d2h8aa1 f.56.1.1 (A:9-147) Mic 3.8 30 0.0022 24.8 -3.1 6 375-380 68-73 (139)
10 d2daha1 a.5.2.1 (A:8-48) Ubiqu 3.7 39 0.0029 18.5 -1.8 10 373-382 26-35 (41)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.59 E-value=42 Score=15.95 Aligned_cols=17 Identities=12% Similarity=0.372 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 042257 191 KGALLIAAGCFAWSCFI 207 (383)
Q Consensus 191 ~G~~~~l~a~~~~a~~~ 207 (383)
.|.+..-+++++||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57788888888888764
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=12.87 E-value=3.2e+02 Score=21.90 Aligned_cols=14 Identities=7% Similarity=-0.159 Sum_probs=6.5
Q ss_pred HHHHHHHHhccCcc
Q 042257 272 YFIMGWLMKRRGPV 285 (383)
Q Consensus 272 ~~~~~~a~~~~~~~ 285 (383)
........+..+..
T Consensus 362 ~~~~~~~~~~~p~~ 375 (447)
T d1pw4a_ 362 MLIGLHALELAPKK 375 (447)
T ss_dssp HHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHcCHH
Confidence 33444455555543
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=10.21 E-value=4.3e+02 Score=21.77 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc
Q 042257 82 IALVSLFEPVISQNLYYTGMKYTT 105 (383)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~al~~~~ 105 (383)
+..+|.+....++..|+-+-....
T Consensus 198 ~~~lG~~iLw~gW~gFN~gs~~~~ 221 (383)
T d1u7ga_ 198 MVFTGTAILYIGWFGFNAGSAGTA 221 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSS
T ss_pred hhhHHHHHHHHHHHHhcccccccc
Confidence 445565555667777776665543
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.56 E-value=4.5e+02 Score=20.84 Aligned_cols=38 Identities=3% Similarity=-0.049 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Q 042257 200 CFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTIL 238 (383)
Q Consensus 200 ~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~ 238 (383)
.+.+++.....-++..+.+. ........+...+.....
T Consensus 69 ~~~~~~~~~~~G~l~Dr~g~-r~~~~~~~~~~~~~~~~~ 106 (447)
T d1pw4a_ 69 SIAYGFSKFIMGSVSDRSNP-RVFLPAGLILAAAVMLFM 106 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHhhc
Confidence 44445555555666666653 333334444444433333
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.55 E-value=1.7e+02 Score=14.01 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=5.9
Q ss_pred HHHHHHHhccccc
Q 042257 299 AVLGSFFLAEKLY 311 (383)
Q Consensus 299 ~l~~~~~~~e~~~ 311 (383)
+.+-.++++|+|.
T Consensus 16 lfffaiffreppr 28 (30)
T d2axtt1 16 LFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHTSCCCC
T ss_pred HHHHHHHhcCCCC
Confidence 3333345555543
No 6
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.97 E-value=2.3e+02 Score=15.04 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042257 72 PKMTLPIFAKIALVSLFEPVISQNLY 97 (383)
Q Consensus 72 ~~~~~~~~~~~~~~g~~~~~~~~~~~ 97 (383)
+...+|+..-++..|.++......++
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~l~ 30 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTLAL 30 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchhhhhhcc
Confidence 45556777777777776644444443
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.71 E-value=2.2e+02 Score=14.58 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=16.6
Q ss_pred CccchhhHHHHHHHHHHHHHHHH
Q 042257 185 NEEDLTKGALLIAAGCFAWSCFI 207 (383)
Q Consensus 185 ~~~~~~~G~~~~l~a~~~~a~~~ 207 (383)
......+|.++.+.-++.++-|.
T Consensus 13 NrtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 13 NRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHh
Confidence 45556788888888887777664
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.26 E-value=2.2e+02 Score=18.04 Aligned_cols=18 Identities=17% Similarity=0.026 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhhccCCCC
Q 042257 319 VIIVIGLYMVLWGRNKDR 336 (383)
Q Consensus 319 ~li~~gv~l~~~~~~~~~ 336 (383)
.+++.|.+++...|.|++
T Consensus 29 ~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp TTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHhhheeeecc
Confidence 344555555555555443
No 9
>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.75 E-value=30 Score=24.77 Aligned_cols=6 Identities=67% Similarity=0.673 Sum_probs=2.7
Q ss_pred CCCccc
Q 042257 375 GGDLEN 380 (383)
Q Consensus 375 ~~~~~~ 380 (383)
.+|.||
T Consensus 68 ~N~~E~ 73 (139)
T d2h8aa1 68 LNDLEN 73 (139)
T ss_dssp HHHHHT
T ss_pred HcchhH
Confidence 344444
No 10
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.74 E-value=39 Score=18.54 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=5.3
Q ss_pred cCCCCccccc
Q 042257 373 RNGGDLENAI 382 (383)
Q Consensus 373 ~~~~~~~~~~ 382 (383)
..+||++.||
T Consensus 26 ~t~Gdv~~Ai 35 (41)
T d2daha1 26 ATGGDVDAAV 35 (41)
T ss_dssp HHTSCHHHHH
T ss_pred HcCCCHHHHH
Confidence 3455555554
Done!