BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042258
(152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 23/144 (15%)
Query: 8 YCYAVEVVIWL-----ILERRNPWSGSLIDIMIPDPDVRFTLKLAAVETGNWLSGLIQKF 62
+ Y ++V++ L + ER P S + + D F + +TG
Sbjct: 114 FLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVDTAFDDHTSLFDTGG--------- 164
Query: 63 RGDSEETQGLCPQELPVSLPQMSYK-NGETEMTSNTD-CAICLDDFIEGETCKSFPECNH 120
++GL +L +P+M+ N T+ + NTD C++CL DF GET +S P C+H
Sbjct: 165 ------SKGL-TGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHH 217
Query: 121 IFHLHCIDQWLKHRLNCPVCRNPL 144
+FHL CID WL +CP+CR +
Sbjct: 218 MFHLPCIDNWLLRHGSCPMCRRDI 241
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 41 RFTLKLAAVETGNWLSGLIQKFRGDSEETQGLCPQELPVSLPQMSYKNGETEMTSNTDCA 100
RFT N + L + + Q L +++PV L Y +G +M + T+C
Sbjct: 63 RFTSDDQVSNASNANANLGRLAAATGLKKQAL--KQIPVGL----YGSGIIDMKA-TECL 115
Query: 101 ICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPL 144
ICL DF +GE + P+CNH FH+ CID WL R +CP CR L
Sbjct: 116 ICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSL 159
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 80 SLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPV 139
SLP Y + N DC ICL DF EGET K P C H+FH+ C+D WL + CP+
Sbjct: 123 SLPVYRYTKAAKQ--RNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPL 180
Query: 140 CRN 142
CR+
Sbjct: 181 CRS 183
>sp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2
SV=1
Length = 159
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 64 GDSEETQGLCPQELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFH 123
G + GL +EL P Y +GE ++ + T+CAICL +F +GE + P CNH FH
Sbjct: 72 GTVADRAGLKKRELK-KFPVAEYGSGEVKIAA-TECAICLGEFADGERVRVLPPCNHSFH 129
Query: 124 LHCIDQWLKHRLNCPVCRNPL 144
+ CID WL +CP CR+ L
Sbjct: 130 MSCIDTWLVSHSSCPNCRHSL 150
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 46 LAAVETGNWLSGLIQKFRGDSEETQGLCPQELPVSLPQMSYKNGET------EMTSNTDC 99
LAAV WL GDS ++ SLP+ ++ E+ E +T+C
Sbjct: 45 LAAVVRCAWLRRFTAG--GDSPSPNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTEC 102
Query: 100 AICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRN 142
AICL DF +GE + P C H FH+ CID+WL R +CP CR
Sbjct: 103 AICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRR 145
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 65 DSEETQGLCPQELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHL 124
D+ ++GL L +P++ + E+ S C++CL DF GET +S P C+H+FHL
Sbjct: 146 DTAISKGLTGDSLN-RIPKVRITDTSPEIVS---CSVCLQDFQVGETVRSLPHCHHMFHL 201
Query: 125 HCIDQWLKHRLNCPVCRNPL 144
CID+WL+ +CP+CR L
Sbjct: 202 PCIDKWLRRHASCPLCRRHL 221
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 69.3 bits (168), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 64 GDSEETQGLCPQELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFH 123
GD + +GL +++ +L SY+ + C++C+ D++ G + P C H FH
Sbjct: 580 GDDDPIRGLTKEQID-NLSTRSYEQDGVDSELGKVCSVCISDYVAGNKLRQLP-CLHEFH 637
Query: 124 LHCIDQWLKHRLNCPVCRNPL 144
+HCID+WL CPVCR P+
Sbjct: 638 IHCIDRWLSENCTCPVCRRPV 658
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 80 SLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPV 139
S+ YK+G+ +DC++CL +F E E+ + P+CNH FHL CID WLK NCP+
Sbjct: 124 SITVYKYKSGDG-FVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPL 182
Query: 140 CR 141
CR
Sbjct: 183 CR 184
>sp|Q6NML0|ATL76_ARATH E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76
PE=1 SV=1
Length = 225
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 81 LPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVC 140
P +SY +C ICL DF+ GE + P+CNH FH+ CID+WL+H L CP C
Sbjct: 117 FPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKC 176
Query: 141 RN 142
R+
Sbjct: 177 RH 178
>sp|Q9FLC6|ATL73_ARATH RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2
SV=1
Length = 176
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 65 DSEETQGLCPQELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHL 124
++ +G+ + L V +P SY + E +M + T+C ICL DF+EGET + P+CNH FH+
Sbjct: 82 NANVAKGIKKRALKV-IPVDSY-SPELKMKA-TECLICLGDFVEGETVRVLPKCNHGFHV 138
Query: 125 HCIDQWLKHRLNCPVCRNPL 144
CID WL +CP CR L
Sbjct: 139 KCIDTWLLSHSSCPTCRQSL 158
>sp|Q9C919|ATL19_ARATH Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana
GN=ATL19 PE=3 SV=1
Length = 178
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Query: 1 LWLLVSLYCYAVEVVIWLILE-RRNPWSGSLIDIMIPDPDVRFTLKLAAVETGNWLSGLI 59
+ L+V + A+ +VI++I++ P+ G+ +D+ + R + V +S +
Sbjct: 25 ILLVVLIATSALILVIYVIIDCILRPFLGTCLDLDLEIGVQRGQQRARIVTYHTIISTGL 84
Query: 60 QKFRGDSE-ETQGLCPQELPVSLPQMSYKNG-----ETEMTSNTDCAICLDDFIEGETCK 113
+ + E + +GL + LP++ G E + + +CAICL ++ E C+
Sbjct: 85 RLPDFEREGKKRGLKQSVIETLLPKLLVGQGNHEEDEEKSLESRECAICLSGYVVNEECR 144
Query: 114 SFPECNHIFHLHCIDQWLKHRLNCPVCRNPL 144
FP C HI+H CID WLK+ L CP CR L
Sbjct: 145 VFPVCRHIYHALCIDAWLKNHLTCPTCRKDL 175
>sp|P0C034|ATL10_ARATH RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2
SV=1
Length = 251
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 81 LPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVC 140
P +SY + +C ICL DF+ GE + P+CNH FH+ CID+WL+ L CP C
Sbjct: 117 FPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKC 176
Query: 141 RN 142
RN
Sbjct: 177 RN 178
>sp|Q9ZV51|ATL56_ARATH RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2
SV=1
Length = 181
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 67 EETQGLCPQELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHC 126
E + GL + + LPQ + T +DC +C D F +G+ C++ P C H+FH C
Sbjct: 79 ESSDGLSSRFVK-KLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKC 137
Query: 127 IDQWLKHRLNCPVCR 141
+D WL CP+CR
Sbjct: 138 VDTWLLKASTCPICR 152
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 65 DSEETQGLCPQELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHL 124
D + +GL +++ +L Y++ + C++C+ D++ G + P C H FH+
Sbjct: 599 DDDRIRGLTKEQID-NLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLP-CMHEFHI 656
Query: 125 HCIDQWLKHRLNCPVCRNPL 144
HCID+WL CP+CR P+
Sbjct: 657 HCIDRWLSENCTCPICRQPV 676
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 80 SLPQMSYKNGETEMTSNTD--CAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNC 137
+ P Y + +T+ + CAICL++F + ET + P+C+H+FH HCID WL+ + C
Sbjct: 107 TFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTC 166
Query: 138 PVCRNPLCRNL 148
PVCR L +
Sbjct: 167 PVCRANLAEQV 177
>sp|Q9M0C3|ATL14_ARATH RING-H2 finger protein ATL14 OS=Arabidopsis thaliana GN=ATL14 PE=2
SV=1
Length = 176
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 67 EETQGLCPQELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHC 126
E + GL P+ + LPQ Y +E + DC +C+D F +G+ C+ P C H+FH C
Sbjct: 85 EYSDGLSPRCVK-RLPQFKYCEPSSEYGGD-DCVVCIDGFRQGQWCRKLPRCGHVFHRKC 142
Query: 127 IDQWLKHRLNCPVCRNPLCR 146
+D WL CP+CR+ + R
Sbjct: 143 VDLWLIKVSTCPICRDRVYR 162
>sp|Q9LS99|ATL77_ARATH RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2
SV=1
Length = 220
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 65 DSEETQGLCPQELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHL 124
DS +G+ + L + LP ++Y +C ICL DF+ GE + P+CNH FHL
Sbjct: 97 DSSVNKGIKKKALKM-LPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHL 155
Query: 125 HCIDQWLKHRLNCPVCRN 142
CID+WL + CP CR+
Sbjct: 156 RCIDKWLTQHMTCPKCRH 173
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 80 SLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPV 139
S+ + +K GE + T+C++CL++F E E+ + P+C+H FHL+CID WL NCP+
Sbjct: 117 SITVVGFKKGEG-IIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPL 175
Query: 140 CRNPL 144
CR P+
Sbjct: 176 CRAPV 180
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 69 TQGLCPQELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCID 128
T GL Q + S+ +YK G+ + TDC +CL++F E E+ + P+CNH FH+ CID
Sbjct: 149 TTGL-QQSIINSITICNYKRGDG-LIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCID 206
Query: 129 QWLKHRLNCPVCR 141
WL NCP+CR
Sbjct: 207 TWLSSHTNCPLCR 219
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 86 YKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCR 141
Y+ G+ TDC++CL +F +GE+ + P C+H FH CID WLK NCP+CR
Sbjct: 145 YRRGDG-FVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCR 199
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 89 GETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRN 142
G+T + DCA+CL +F EG+ ++ P C H FHL CID+WL+ NCP+CR
Sbjct: 146 GKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRT 199
>sp|Q8LC69|ATL8_ARATH RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2
SV=2
Length = 185
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 44 LKLAAVETGNWLSGLIQKFRGD-------SEETQGLCPQELPVSLPQMSYKNGETEMTSN 96
+ L AV WL + + R D + +GL + L SLP+++Y
Sbjct: 43 IGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANKGLKKKVL-RSLPKLTYSPDSPPAEKL 101
Query: 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRN 142
+CAICL +F G+ + P+C H FH+ CID WL +CP CR
Sbjct: 102 VECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQ 147
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCR 141
++DC++CL +F E E+ + P+CNH FH+ CID WLK NCP+CR
Sbjct: 156 SSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCR 141
+ TDC+ICL +F E E+ + P+CNH FH+ CID+WLK NCP+CR
Sbjct: 151 NGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCR 197
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 65 DSEETQGLCPQELPVSLPQM--SYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIF 122
D+ ++GL +L +P++ + KN + C++CL DF GET +S P C+H+F
Sbjct: 156 DTGGSKGL-TGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMF 214
Query: 123 HLHCIDQWLKHRLNCPVCRNPL 144
HL CID WL +CP+CR L
Sbjct: 215 HLPCIDNWLFRHGSCPMCRRDL 236
>sp|Q9ZT49|ATL45_ARATH RING-H2 finger protein ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2
SV=1
Length = 200
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 81 LPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVC 140
LP S +G+ S+T+CAIC+ +F EGE + P C+H FH+ CID+WL R +CP C
Sbjct: 99 LPCSSVGDGD----SSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSC 154
Query: 141 RN 142
R
Sbjct: 155 RR 156
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 80 SLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPV 139
+LP Y N + DCA+CL++F + + + P C+H FHLHCID WL CP+
Sbjct: 188 ALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPL 247
Query: 140 CRNPL 144
CR L
Sbjct: 248 CRRSL 252
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 80 SLPQMSYKNGETEMTSNT--DCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNC 137
+ P Y +T+ +CAICL++F + ET + P+C+H+FH HCI WL+ + C
Sbjct: 103 TFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTC 162
Query: 138 PVCRNPLC 145
PVCR L
Sbjct: 163 PVCRTNLA 170
>sp|Q94BY6|ATL75_ARATH RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2
SV=1
Length = 226
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 81 LPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVC 140
P +SY +C ICL DF+ GE + P+C+H FH+ CID+WL+ L CP C
Sbjct: 118 FPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKC 177
Query: 141 RN 142
R+
Sbjct: 178 RH 179
>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2
SV=2
Length = 299
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 85 SYKN---GETEMTSNTD---CAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCP 138
SYK GE+ T+ C ICL ++ ET + PEC+H FH+ CID+WLK +CP
Sbjct: 233 SYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCP 292
Query: 139 VCRN 142
VCRN
Sbjct: 293 VCRN 296
>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2
SV=1
Length = 310
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 91 TEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPL 144
T+ +CA+CL D ++G+ + P CNH FH+ CID W + CP+CRN +
Sbjct: 112 TDFKDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTV 165
>sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1
SV=1
Length = 197
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 80 SLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPV 139
SLP++++ E +CAICL +F G+ + P+C H FH+ CID WL +CP
Sbjct: 92 SLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPS 151
Query: 140 CRNPL 144
CR L
Sbjct: 152 CRQIL 156
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPL 144
T C ICL D GE +S P+C+H FHL C+D+WL +CP+CR +
Sbjct: 174 THCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQAV 221
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 65 DSEETQGLCPQELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHL 124
D+ GL EL SLP + ++ + +C+ICL + ++G+ + P+CNH FH+
Sbjct: 96 DALSNTGLTSFELS-SLPIVFFR--QDSCKDGLECSICLSELVKGDKARLLPKCNHSFHV 152
Query: 125 HCIDQWLKHRLNCPVCRNPL 144
CID W + CP+CRN +
Sbjct: 153 ECIDMWFQSHSTCPICRNTV 172
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 65 DSEETQGLCPQELPVSLPQMSYKNGETEMTSNTD--CAICLDDFIEGETCKSFPECNHIF 122
D +G + S P +Y + + + D CAICL++ + ET + P CNH+F
Sbjct: 88 DGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLF 147
Query: 123 HLHCIDQWLKHRLNCPVCRNPL 144
H+ CID WL CPVCR+ L
Sbjct: 148 HIDCIDTWLYSHATCPVCRSNL 169
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 80 SLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPV 139
S P++ Y + T++ CAICL D+ + P+CNH+FHL CID WL+ CPV
Sbjct: 129 SYPKILYSEAKGPTTASC-CAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPV 187
Query: 140 CR 141
CR
Sbjct: 188 CR 189
>sp|Q9M313|ATL68_ARATH RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2
SV=1
Length = 212
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 85 SYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRN 142
+ +GE T C+ICL +++E E + PEC H FH++C+D WLK +CPVCRN
Sbjct: 125 GFHDGEGR---ETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRN 179
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 65 DSEETQGLCPQELPVSLPQMSYKN-GETEMTSNTDCAICLDDFIEGETCKSFPECNHIFH 123
D ++ +GL +++ +S +N GE + C++C+ ++ EG + P C+H +H
Sbjct: 674 DDDQPRGLTKEQID----NLSTRNYGENDALKT--CSVCITEYTEGNKLRKLP-CSHEYH 726
Query: 124 LHCIDQWLKHRLNCPVCR 141
+HCID+WL CP+CR
Sbjct: 727 IHCIDRWLSENSTCPICR 744
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 65 DSEETQGLCPQELPVSLPQMSYKN-GETEMTSNTDCAICLDDFIEGETCKSFPECNHIFH 123
D ++ +GL +++ +S +N GE + C++C+ ++ EG + P C+H +H
Sbjct: 539 DDDQPRGLTKEQID----NLSTRNFGENDALKT--CSVCITEYTEGNKLRKLP-CSHEYH 591
Query: 124 LHCIDQWLKHRLNCPVCR 141
+HCID+WL CP+CR
Sbjct: 592 IHCIDRWLSENSTCPICR 609
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 65 DSEETQGLCPQELPVSLPQMSYKN-GETEMTSNTDCAICLDDFIEGETCKSFPECNHIFH 123
D ++ +GL +++ +S +N GE + C++C+ ++ EG + P C+H +H
Sbjct: 556 DDDQPRGLTKEQID----NLSTRNFGENDALKT--CSVCITEYTEGNKLRKLP-CSHEYH 608
Query: 124 LHCIDQWLKHRLNCPVCR 141
+HCID+WL CP+CR
Sbjct: 609 VHCIDRWLSENSTCPICR 626
>sp|P0CH03|AT21C_ARATH Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana
GN=ATL21C PE=3 SV=1
Length = 366
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 89 GETEMTSNTD---CAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRN 142
GE+ S T+ C ICL ++ ET + PEC+H FH+ CID WLK +CP+CRN
Sbjct: 307 GESRRLSGTNGIVCPICLSEYASKETVRFIPECDHCFHVECIDVWLKIHGSCPLCRN 363
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 80 SLPQMSYKN-----GETEMTSNT-DCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH 133
++P +K GE + + N+ +C++CL++F E E + P C H+FH+ CID WL+
Sbjct: 109 AIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQG 168
Query: 134 RLNCPVCR 141
NCP+CR
Sbjct: 169 NANCPLCR 176
>sp|O82353|ATL67_ARATH RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2
SV=1
Length = 214
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 75 QELPVSLPQMSYKNGETEMTSN-------TDCAICLDDFIEGETCKSFPECNHIFHLHCI 127
Q + S P+ + + +S+ T C+ICL ++ E E + PEC H FHL C+
Sbjct: 107 QAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCL 166
Query: 128 DQWLKHRLNCPVCRN 142
D WLK +CPVCRN
Sbjct: 167 DAWLKLNGSCPVCRN 181
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 31/47 (65%)
Query: 98 DCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPL 144
+CAICL++F + ET + P C+H FH CID WL R CPVCR L
Sbjct: 127 ECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASL 173
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 40 VRFTLKLAAVETGNWLSGLIQKFRGDSE-ETQGLCPQELPVSLPQMSYKNGETEMTSNTD 98
RF L+ GL FR E +GL P + SLP + + S T+
Sbjct: 53 ARFVLR----RRREAFRGLPVIFRHPFEMPKRGLNPTVI-ASLPTFTVGATDGVAASATE 107
Query: 99 CAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCR 141
CA+CL E + + P C HIFH+ C+D WL CPVCR
Sbjct: 108 CAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCR 150
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 65 DSEETQGLCPQELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHL 124
D ++ +GL +++ +L S+ + T C++C+ ++ EG + P C+H +H+
Sbjct: 517 DEDQPRGLTKEQID-NLAMRSFGENDALKT----CSVCITEYTEGNKLRKLP-CSHEYHV 570
Query: 125 HCIDQWLKHRLNCPVCR 141
HCID+WL CP+CR
Sbjct: 571 HCIDRWLSENSTCPICR 587
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 65 DSEETQGLCPQELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHL 124
D ++ +GL +++ +L S+ + T C++C+ ++ EG + P C+H +H+
Sbjct: 541 DDDQPRGLTKEQID-NLAMRSFGENDALKT----CSVCITEYTEGNKLRKLP-CSHEYHV 594
Query: 125 HCIDQWLKHRLNCPVCR 141
HCID+WL CP+CR
Sbjct: 595 HCIDRWLSENSTCPICR 611
>sp|Q6NQG7|ATL78_ARATH RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2
SV=1
Length = 219
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRNLE 149
+T+CAICL +F+ E K P C+H FH+ CID+WL +CP CR+ L + E
Sbjct: 128 DTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCE 181
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 98 DCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPL 144
+C++CL +F E + + P+C H+FH+ CID W + R +CP+CR P+
Sbjct: 112 ECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPV 158
>sp|Q9M0R6|ATL35_ARATH Putative RING-H2 finger protein ATL35 OS=Arabidopsis thaliana
GN=ATL35 PE=3 SV=1
Length = 302
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 66 SEETQGLCPQELPVSLPQMSYK--NGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFH 123
S +GL +EL S P Y G +CAICL +F++ ET + P C+H FH
Sbjct: 89 SRARRGL-EKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFH 147
Query: 124 LHCIDQWLKHRLNCPVCRNPL 144
+CID WL + CP CR L
Sbjct: 148 ANCIDVWLSSQSTCPACRANL 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.475
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,207,135
Number of Sequences: 539616
Number of extensions: 2581322
Number of successful extensions: 7334
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 6822
Number of HSP's gapped (non-prelim): 592
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)