Query 042258
Match_columns 152
No_of_seqs 143 out of 1664
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 07:17:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 4E-19 1.4E-23 115.4 5.8 79 67-147 12-90 (91)
2 1x4j_A Ring finger protein 38; 99.7 5.5E-18 1.9E-22 106.0 5.4 70 75-147 4-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.7 7E-17 2.4E-21 94.9 4.3 51 95-145 4-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 1.9E-16 6.6E-21 97.3 5.9 57 94-151 12-68 (69)
5 2ep4_A Ring finger protein 24; 99.6 3.3E-16 1.1E-20 97.5 5.8 56 94-150 13-68 (74)
6 2ect_A Ring finger protein 126 99.6 1.2E-15 4.1E-20 95.9 5.4 54 94-148 13-66 (78)
7 2ecl_A Ring-box protein 2; RNF 99.6 1E-15 3.4E-20 97.2 2.8 51 96-146 15-76 (81)
8 2ecm_A Ring finger and CHY zin 99.5 3.3E-15 1.1E-19 87.6 3.8 50 95-145 4-54 (55)
9 3ng2_A RNF4, snurf, ring finge 99.5 6.9E-15 2.4E-19 90.5 3.9 54 94-148 8-65 (71)
10 2ea6_A Ring finger protein 4; 99.5 1.2E-14 4E-19 88.9 4.7 52 94-146 13-68 (69)
11 1v87_A Deltex protein 2; ring- 99.5 2.1E-14 7.2E-19 96.3 5.7 53 95-148 24-96 (114)
12 2xeu_A Ring finger protein 4; 99.5 1.5E-14 5.2E-19 87.1 2.8 51 96-147 3-57 (64)
13 3dpl_R Ring-box protein 1; ubi 99.5 3.6E-14 1.2E-18 94.4 4.9 49 95-144 36-99 (106)
14 2djb_A Polycomb group ring fin 99.5 1.2E-13 4.1E-18 85.4 6.0 54 94-150 13-66 (72)
15 2d8s_A Cellular modulator of i 99.4 6E-14 2E-18 88.8 4.5 54 94-149 13-73 (80)
16 2ecn_A Ring finger protein 141 99.4 3.2E-14 1.1E-18 87.4 3.0 51 94-149 13-63 (70)
17 2d8t_A Dactylidin, ring finger 99.4 6.5E-14 2.2E-18 86.4 3.9 49 95-147 14-62 (71)
18 1chc_A Equine herpes virus-1 r 99.4 9.4E-14 3.2E-18 84.8 3.6 50 95-147 4-53 (68)
19 2ct2_A Tripartite motif protei 99.4 3.2E-13 1.1E-17 86.3 5.5 53 94-147 13-69 (88)
20 4a0k_B E3 ubiquitin-protein li 99.4 1.4E-14 4.8E-19 97.8 -1.2 50 95-144 47-110 (117)
21 2ecy_A TNF receptor-associated 99.4 4.3E-13 1.5E-17 81.5 5.3 50 94-147 13-63 (66)
22 2csy_A Zinc finger protein 183 99.4 4.2E-13 1.4E-17 84.8 5.4 48 95-146 14-61 (81)
23 2yur_A Retinoblastoma-binding 99.4 4.1E-13 1.4E-17 83.5 4.9 50 94-146 13-64 (74)
24 2ysl_A Tripartite motif-contai 99.4 7E-13 2.4E-17 81.9 5.9 50 94-147 18-70 (73)
25 4ayc_A E3 ubiquitin-protein li 99.4 2.7E-13 9.1E-18 94.1 4.2 46 97-146 54-99 (138)
26 1t1h_A Gspef-atpub14, armadill 99.4 8.1E-13 2.8E-17 82.7 4.9 51 93-147 5-56 (78)
27 2ecw_A Tripartite motif-contai 99.3 3E-12 1E-16 81.0 6.7 50 94-147 17-72 (85)
28 2ct0_A Non-SMC element 1 homol 99.3 1.3E-12 4.5E-17 81.2 4.4 48 97-147 16-65 (74)
29 1g25_A CDK-activating kinase a 99.3 1.5E-12 5E-17 78.8 4.4 51 96-147 3-56 (65)
30 4ap4_A E3 ubiquitin ligase RNF 99.3 8.6E-13 2.9E-17 90.1 3.6 53 94-147 5-61 (133)
31 3lrq_A E3 ubiquitin-protein li 99.3 1.1E-12 3.9E-17 86.1 3.8 48 96-147 22-71 (100)
32 2egp_A Tripartite motif-contai 99.3 7.5E-13 2.6E-17 82.9 2.7 49 94-146 10-65 (79)
33 2ecv_A Tripartite motif-contai 99.3 4E-12 1.4E-16 80.4 5.8 50 94-147 17-72 (85)
34 2y43_A E3 ubiquitin-protein li 99.3 1.8E-12 6.2E-17 84.8 4.3 48 96-146 22-69 (99)
35 2ysj_A Tripartite motif-contai 99.3 6.4E-12 2.2E-16 75.5 5.8 43 94-140 18-63 (63)
36 3ztg_A E3 ubiquitin-protein li 99.3 6E-12 2.1E-16 81.1 5.6 49 94-145 11-61 (92)
37 2ckl_A Polycomb group ring fin 99.3 3E-12 1E-16 85.1 4.1 49 95-147 14-63 (108)
38 2ecj_A Tripartite motif-contai 99.2 7.9E-12 2.7E-16 73.6 4.9 43 94-140 13-58 (58)
39 3fl2_A E3 ubiquitin-protein li 99.2 7.5E-12 2.6E-16 85.1 5.3 47 96-146 52-99 (124)
40 4ap4_A E3 ubiquitin ligase RNF 99.2 4.7E-12 1.6E-16 86.4 3.4 53 94-147 70-126 (133)
41 3k1l_B Fancl; UBC, ring, RWD, 99.2 2.8E-12 9.7E-17 100.2 2.4 56 94-149 306-376 (381)
42 1jm7_A BRCA1, breast cancer ty 99.2 1E-11 3.5E-16 82.7 4.0 47 97-147 22-71 (112)
43 2ckl_B Ubiquitin ligase protei 99.2 1.5E-11 5.1E-16 87.5 4.4 49 95-146 53-102 (165)
44 1z6u_A NP95-like ring finger p 99.2 1.7E-11 5.9E-16 86.2 4.2 48 96-147 78-126 (150)
45 3hct_A TNF receptor-associated 99.2 1.2E-11 4E-16 83.5 3.1 50 94-147 16-66 (118)
46 3l11_A E3 ubiquitin-protein li 99.2 4.7E-12 1.6E-16 85.0 0.9 46 96-145 15-61 (115)
47 2vje_A E3 ubiquitin-protein li 99.1 1.8E-11 6.1E-16 74.1 2.7 50 95-148 7-59 (64)
48 2y1n_A E3 ubiquitin-protein li 99.1 3.6E-11 1.2E-15 95.9 5.0 51 96-150 332-383 (389)
49 2kr4_A Ubiquitin conjugation f 99.1 5E-11 1.7E-15 76.0 4.5 51 93-147 11-61 (85)
50 1rmd_A RAG1; V(D)J recombinati 99.1 3.5E-11 1.2E-15 80.8 3.7 48 96-147 23-71 (116)
51 2kre_A Ubiquitin conjugation f 99.1 6E-11 2.1E-15 77.9 4.5 51 93-147 26-76 (100)
52 1e4u_A Transcriptional repress 99.1 1.4E-10 4.9E-15 72.8 5.5 54 94-148 9-64 (78)
53 2vje_B MDM4 protein; proto-onc 99.1 3.6E-11 1.2E-15 72.5 2.3 51 96-148 7-58 (63)
54 1wgm_A Ubiquitin conjugation f 99.1 1.3E-10 4.6E-15 76.0 5.2 50 94-147 20-70 (98)
55 3knv_A TNF receptor-associated 99.1 2.4E-11 8.1E-16 84.6 1.5 49 93-145 28-77 (141)
56 4ic3_A E3 ubiquitin-protein li 99.0 6.2E-11 2.1E-15 73.6 2.0 47 96-150 24-71 (74)
57 1bor_A Transcription factor PM 99.0 1.1E-10 3.7E-15 68.7 1.9 46 95-147 5-50 (56)
58 1jm7_B BARD1, BRCA1-associated 99.0 1E-10 3.5E-15 78.7 1.5 45 96-146 22-67 (117)
59 3hcs_A TNF receptor-associated 98.9 5.4E-10 1.9E-14 79.7 3.1 50 94-147 16-66 (170)
60 2ecg_A Baculoviral IAP repeat- 98.9 8.1E-10 2.8E-14 68.6 3.3 47 96-150 25-72 (75)
61 2c2l_A CHIP, carboxy terminus 98.9 8.2E-10 2.8E-14 83.9 3.6 51 93-147 205-256 (281)
62 2yu4_A E3 SUMO-protein ligase 98.9 9E-10 3.1E-14 71.4 3.2 47 94-143 5-59 (94)
63 2ea5_A Cell growth regulator w 98.8 2E-09 7E-14 65.7 3.8 48 95-150 14-62 (68)
64 2f42_A STIP1 homology and U-bo 98.8 4.9E-09 1.7E-13 75.5 3.8 51 93-147 103-154 (179)
65 2yho_A E3 ubiquitin-protein li 98.8 2.5E-09 8.5E-14 67.2 1.9 44 97-148 19-63 (79)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.7 6.8E-09 2.3E-13 61.8 3.5 47 95-145 5-58 (60)
67 1wim_A KIAA0161 protein; ring 98.7 6.9E-09 2.3E-13 67.0 3.9 48 95-143 4-61 (94)
68 3t6p_A Baculoviral IAP repeat- 98.6 8.4E-09 2.9E-13 81.4 0.8 48 95-150 294-342 (345)
69 3htk_C E3 SUMO-protein ligase 98.5 2.9E-08 1E-12 75.1 2.8 49 95-146 180-232 (267)
70 2bay_A PRE-mRNA splicing facto 98.5 3.4E-08 1.2E-12 58.9 1.7 49 97-148 4-52 (61)
71 3nw0_A Non-structural maintena 98.3 1.2E-06 4.1E-11 65.7 5.5 49 96-147 180-230 (238)
72 3vk6_A E3 ubiquitin-protein li 98.1 1.7E-06 5.9E-11 55.9 3.6 46 98-146 3-49 (101)
73 2ko5_A Ring finger protein Z; 97.6 5.3E-05 1.8E-09 48.2 3.2 54 94-152 26-79 (99)
74 2lri_C Autoimmune regulator; Z 96.1 0.0053 1.8E-07 36.7 3.4 46 95-144 11-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 94.9 0.023 7.8E-07 36.2 3.4 34 97-131 4-38 (101)
76 3lqh_A Histone-lysine N-methyl 94.8 0.01 3.4E-07 42.6 1.5 50 96-145 2-65 (183)
77 1we9_A PHD finger family prote 94.5 0.0053 1.8E-07 36.2 -0.3 49 95-143 5-58 (64)
78 2l5u_A Chromodomain-helicase-D 93.5 0.061 2.1E-06 31.3 3.0 46 94-143 9-58 (61)
79 2vpb_A Hpygo1, pygopus homolog 92.6 0.11 3.6E-06 30.8 3.1 34 95-128 7-41 (65)
80 2k16_A Transcription initiatio 92.6 0.052 1.8E-06 32.9 1.7 51 95-146 17-71 (75)
81 1wep_A PHF8; structural genomi 92.6 0.17 5.9E-06 30.9 4.1 47 97-144 13-64 (79)
82 1mm2_A MI2-beta; PHD, zinc fin 91.1 0.05 1.7E-06 31.7 0.4 49 94-146 7-59 (61)
83 2kgg_A Histone demethylase jar 90.9 0.071 2.4E-06 30.0 0.9 44 98-141 4-52 (52)
84 3o36_A Transcription intermedi 90.7 0.085 2.9E-06 37.4 1.4 46 95-144 3-52 (184)
85 3u5n_A E3 ubiquitin-protein li 90.5 0.11 3.7E-06 37.6 1.8 47 95-145 6-56 (207)
86 1f62_A Transcription factor WS 90.4 0.18 6E-06 28.0 2.3 44 98-142 2-49 (51)
87 1wil_A KIAA1045 protein; ring 90.1 1 3.5E-05 27.9 5.7 36 93-130 12-47 (89)
88 2l43_A N-teminal domain from h 89.2 0.15 5E-06 32.0 1.4 52 95-146 24-78 (88)
89 3v43_A Histone acetyltransfera 88.3 0.13 4.3E-06 33.7 0.7 46 97-142 62-111 (112)
90 1fp0_A KAP-1 corepressor; PHD 88.2 0.35 1.2E-05 30.4 2.7 48 94-145 23-74 (88)
91 2puy_A PHD finger protein 21A; 88.1 0.029 9.9E-07 32.6 -2.2 49 95-147 4-56 (60)
92 1weo_A Cellulose synthase, cat 87.3 1.9 6.4E-05 27.0 5.5 51 95-145 15-69 (93)
93 2xb1_A Pygopus homolog 2, B-ce 86.4 0.3 1E-05 31.5 1.7 48 97-144 4-62 (105)
94 1weu_A Inhibitor of growth fam 86.4 1.4 4.7E-05 27.7 4.7 44 97-145 37-87 (91)
95 3m62_A Ubiquitin conjugation f 85.8 0.76 2.6E-05 40.6 4.3 51 93-147 888-939 (968)
96 2yql_A PHD finger protein 21A; 85.6 0.079 2.7E-06 30.2 -1.3 44 95-142 8-55 (56)
97 1xwh_A Autoimmune regulator; P 85.3 0.083 2.8E-06 31.2 -1.4 45 95-143 7-55 (66)
98 1z60_A TFIIH basal transcripti 84.7 0.83 2.8E-05 26.4 2.8 43 97-140 16-58 (59)
99 3v43_A Histone acetyltransfera 84.5 2.2 7.5E-05 27.6 5.3 34 95-128 4-42 (112)
100 2lbm_A Transcriptional regulat 83.9 2 6.8E-05 29.3 4.9 45 95-143 62-117 (142)
101 1wew_A DNA-binding family prot 83.7 0.54 1.8E-05 28.6 1.8 47 97-145 17-74 (78)
102 2lv9_A Histone-lysine N-methyl 82.5 0.61 2.1E-05 29.7 1.8 45 97-143 29-76 (98)
103 2ro1_A Transcription intermedi 82.3 0.28 9.4E-06 35.1 0.1 43 97-143 3-49 (189)
104 3o70_A PHD finger protein 13; 81.9 0.22 7.6E-06 29.6 -0.4 46 95-142 18-66 (68)
105 3shb_A E3 ubiquitin-protein li 81.1 0.25 8.5E-06 30.2 -0.4 44 98-142 28-76 (77)
106 3asl_A E3 ubiquitin-protein li 80.6 0.38 1.3E-05 28.7 0.3 45 98-143 20-69 (70)
107 2ysm_A Myeloid/lymphoid or mix 79.8 0.65 2.2E-05 30.0 1.2 38 94-132 5-42 (111)
108 1wen_A Inhibitor of growth fam 79.6 2.2 7.5E-05 25.4 3.5 46 97-147 17-69 (71)
109 2ku3_A Bromodomain-containing 79.4 2.8 9.6E-05 24.9 3.9 50 94-143 14-66 (71)
110 3ql9_A Transcriptional regulat 77.4 3.3 0.00011 27.7 4.2 47 95-145 56-113 (129)
111 2yw8_A RUN and FYVE domain-con 77.0 1.7 5.8E-05 26.5 2.5 34 97-130 20-53 (82)
112 2cs3_A Protein C14ORF4, MY039 76.8 8.7 0.0003 23.5 5.5 37 97-133 16-52 (93)
113 2o35_A Hypothetical protein DU 76.4 1.1 3.7E-05 28.7 1.5 11 122-132 43-53 (105)
114 3fyb_A Protein of unknown func 76.4 1.1 3.7E-05 28.6 1.5 11 122-132 42-52 (104)
115 3ask_A E3 ubiquitin-protein li 76.3 0.52 1.8E-05 34.7 -0.0 46 97-143 175-225 (226)
116 1wem_A Death associated transc 75.5 4.8 0.00017 23.9 4.3 46 97-144 17-71 (76)
117 2e6r_A Jumonji/ARID domain-con 74.6 0.25 8.5E-06 31.2 -1.9 48 95-143 15-66 (92)
118 2yt5_A Metal-response element- 74.5 1.6 5.5E-05 25.3 1.8 52 95-146 5-64 (66)
119 2ri7_A Nucleosome-remodeling f 73.7 2.1 7.2E-05 29.7 2.6 47 95-142 7-58 (174)
120 1wee_A PHD finger family prote 72.4 2.1 7.2E-05 25.4 2.0 46 97-143 17-66 (72)
121 1z2q_A LM5-1; membrane protein 71.9 3.2 0.00011 25.4 2.8 35 96-130 21-55 (84)
122 2kwj_A Zinc finger protein DPF 71.8 2.6 8.9E-05 27.3 2.5 34 97-130 2-41 (114)
123 2e6s_A E3 ubiquitin-protein li 71.7 0.89 3.1E-05 27.6 0.2 45 97-142 27-76 (77)
124 3i2d_A E3 SUMO-protein ligase 71.7 2.7 9.4E-05 33.1 3.0 45 97-144 250-298 (371)
125 1wev_A Riken cDNA 1110020M19; 71.6 0.39 1.3E-05 30.0 -1.5 50 97-146 17-75 (88)
126 1g47_A Pinch protein; LIM doma 71.1 4.2 0.00014 23.8 3.2 41 96-146 11-51 (77)
127 4gne_A Histone-lysine N-methyl 70.9 4.4 0.00015 26.1 3.5 45 94-144 13-63 (107)
128 1x64_A Alpha-actinin-2 associa 70.5 7.2 0.00025 23.6 4.3 41 94-146 23-63 (89)
129 4fo9_A E3 SUMO-protein ligase 70.1 3.1 0.00011 32.7 3.0 46 97-145 216-265 (360)
130 1joc_A EEA1, early endosomal a 69.9 2.6 8.8E-05 27.9 2.2 33 97-129 70-102 (125)
131 1vfy_A Phosphatidylinositol-3- 69.4 3.2 0.00011 24.6 2.4 33 97-129 12-44 (73)
132 2jvx_A NF-kappa-B essential mo 67.9 1.1 3.8E-05 21.8 0.1 13 134-146 3-15 (28)
133 3c6w_A P28ING5, inhibitor of g 67.8 1.1 3.7E-05 25.7 0.0 41 97-142 10-57 (59)
134 2dj7_A Actin-binding LIM prote 67.1 6.8 0.00023 23.3 3.6 40 96-146 15-54 (80)
135 3t7l_A Zinc finger FYVE domain 67.1 3.2 0.00011 25.7 2.1 34 97-130 21-54 (90)
136 2cu8_A Cysteine-rich protein 2 67.0 4.4 0.00015 23.7 2.7 39 97-146 10-48 (76)
137 2gmg_A Hypothetical protein PF 66.5 1.2 4E-05 28.8 -0.1 23 117-144 72-94 (105)
138 1x4k_A Skeletal muscle LIM-pro 66.4 4.8 0.00016 23.1 2.7 40 97-146 6-45 (72)
139 1x4u_A Zinc finger, FYVE domai 65.8 4.5 0.00015 24.7 2.6 33 97-129 15-47 (84)
140 3f6q_B LIM and senescent cell 65.5 6.5 0.00022 22.4 3.2 43 95-147 10-52 (72)
141 1iml_A CRIP, cysteine rich int 65.1 3.5 0.00012 24.2 1.9 42 97-143 28-70 (76)
142 1y02_A CARP2, FYVE-ring finger 65.1 0.5 1.7E-05 31.4 -2.1 45 97-141 20-64 (120)
143 1x61_A Thyroid receptor intera 64.4 6.1 0.00021 22.7 2.9 13 119-131 53-65 (72)
144 1wyh_A SLIM 2, skeletal muscle 64.3 7.1 0.00024 22.4 3.2 39 97-145 6-44 (72)
145 1dvp_A HRS, hepatocyte growth 64.0 3.1 0.00011 30.1 1.8 34 96-129 161-194 (220)
146 2vnf_A ING 4, P29ING4, inhibit 63.5 1.4 4.6E-05 25.3 -0.2 41 97-142 11-58 (60)
147 1wfk_A Zinc finger, FYVE domai 63.3 4.9 0.00017 24.9 2.4 33 97-129 10-42 (88)
148 2co8_A NEDD9 interacting prote 62.5 7.4 0.00025 23.2 3.1 40 96-146 15-54 (82)
149 1x4l_A Skeletal muscle LIM-pro 62.2 7.8 0.00027 22.3 3.1 39 97-145 6-46 (72)
150 1x63_A Skeletal muscle LIM-pro 61.9 7.8 0.00027 22.9 3.2 40 97-146 16-55 (82)
151 3zyq_A Hepatocyte growth facto 61.3 3.9 0.00013 29.8 2.0 35 96-130 164-198 (226)
152 3mjh_B Early endosome antigen 60.6 2.1 7.3E-05 21.8 0.3 15 95-109 4-18 (34)
153 1zbd_B Rabphilin-3A; G protein 60.0 4.2 0.00014 27.3 1.8 34 95-129 54-89 (134)
154 3kqi_A GRC5, PHD finger protei 57.4 7.4 0.00025 23.1 2.4 46 97-143 11-61 (75)
155 2d8y_A Eplin protein; LIM doma 56.9 10 0.00036 22.9 3.2 39 97-146 16-54 (91)
156 2ct7_A Ring finger protein 31; 56.7 3.5 0.00012 25.3 0.8 32 99-130 28-61 (86)
157 3mpx_A FYVE, rhogef and PH dom 56.1 2.4 8.1E-05 33.5 0.0 50 96-145 375-431 (434)
158 2dar_A PDZ and LIM domain prot 55.9 25 0.00085 21.1 4.8 39 96-146 25-63 (90)
159 1zfo_A LAsp-1; LIM domain, zin 55.1 3.9 0.00013 20.0 0.7 27 97-126 4-30 (31)
160 2g6q_A Inhibitor of growth pro 55.1 2.7 9.2E-05 24.3 0.1 41 97-142 12-59 (62)
161 1x68_A FHL5 protein; four-and- 53.3 12 0.0004 21.8 2.8 39 97-145 6-46 (76)
162 2cor_A Pinch protein; LIM doma 51.6 20 0.0007 21.0 3.8 38 97-146 16-53 (79)
163 2jmo_A Parkin; IBR, E3 ligase, 51.6 4.5 0.00015 24.4 0.8 14 117-130 55-68 (80)
164 1a7i_A QCRP2 (LIM1); LIM domai 51.5 5.2 0.00018 23.7 1.0 27 97-126 8-34 (81)
165 1x62_A C-terminal LIM domain p 50.2 12 0.0004 22.0 2.5 38 96-145 15-52 (79)
166 2l3k_A Rhombotin-2, linker, LI 49.8 8.1 0.00028 25.0 1.9 33 97-131 37-69 (123)
167 2d8x_A Protein pinch; LIM doma 48.3 13 0.00046 21.1 2.5 11 97-107 6-16 (70)
168 2l4z_A DNA endonuclease RBBP8, 47.8 15 0.00051 23.8 2.9 38 97-145 62-99 (123)
169 2d8z_A Four and A half LIM dom 47.5 19 0.00064 20.4 3.1 10 98-107 7-16 (70)
170 2zet_C Melanophilin; complex, 44.8 11 0.00038 25.8 2.0 32 95-127 67-100 (153)
171 2cup_A Skeletal muscle LIM-pro 44.4 23 0.00078 21.6 3.3 45 97-146 34-78 (101)
172 3a1b_A DNA (cytosine-5)-methyl 44.0 28 0.00096 24.0 3.9 43 97-143 80-134 (159)
173 2pk7_A Uncharacterized protein 43.7 5.2 0.00018 23.7 0.1 18 129-146 3-20 (69)
174 1nyp_A Pinch protein; LIM doma 43.7 14 0.00049 20.6 2.1 38 97-146 6-43 (66)
175 1m3v_A FLIN4, fusion of the LI 43.2 26 0.0009 22.4 3.6 48 97-146 33-81 (122)
176 2cur_A Skeletal muscle LIM-pro 43.1 15 0.0005 20.8 2.1 10 97-106 6-15 (69)
177 2egq_A FHL1 protein; LIM domai 42.6 18 0.00062 20.9 2.5 41 97-147 16-59 (77)
178 1wig_A KIAA1808 protein; LIM d 42.5 28 0.00094 20.0 3.3 9 98-106 7-15 (73)
179 2jny_A Uncharacterized BCR; st 42.3 4.6 0.00016 23.8 -0.3 18 129-146 5-22 (67)
180 1v6g_A Actin binding LIM prote 42.2 22 0.00074 20.8 2.8 38 97-146 16-53 (81)
181 2ehe_A Four and A half LIM dom 41.4 16 0.00055 21.4 2.2 40 97-146 16-55 (82)
182 2pv0_B DNA (cytosine-5)-methyl 38.8 46 0.0016 26.3 4.8 44 97-144 94-149 (386)
183 2kpi_A Uncharacterized protein 37.9 12 0.00039 21.1 1.0 26 97-122 11-38 (56)
184 2jne_A Hypothetical protein YF 36.7 9.5 0.00033 24.2 0.5 40 97-145 33-72 (101)
185 3o7a_A PHD finger protein 13 v 35.9 13 0.00045 20.2 1.0 41 101-142 8-51 (52)
186 3vhs_A ATPase wrnip1; zinc fin 35.6 9.5 0.00032 18.0 0.3 10 136-145 8-17 (29)
187 3kv5_D JMJC domain-containing 35.4 26 0.00088 28.6 3.0 46 97-143 38-88 (488)
188 2cuq_A Four and A half LIM dom 34.5 25 0.00084 20.4 2.2 37 97-145 16-52 (80)
189 2iyb_E Testin, TESS, TES; LIM 33.9 23 0.0008 19.8 1.9 39 98-146 4-44 (65)
190 1j2o_A FLIN2, fusion of rhombo 33.1 32 0.0011 21.6 2.7 36 97-134 31-67 (114)
191 2csz_A Synaptotagmin-like prot 32.2 36 0.0012 20.4 2.6 34 94-127 23-57 (76)
192 2dlo_A Thyroid receptor-intera 31.8 26 0.00087 20.5 1.9 37 97-145 16-52 (81)
193 2das_A Zinc finger MYM-type pr 31.7 43 0.0015 19.2 2.7 36 95-130 19-55 (62)
194 2jrp_A Putative cytoplasmic pr 30.9 21 0.00073 21.7 1.4 9 98-106 4-12 (81)
195 2xjy_A Rhombotin-2; oncoprotei 30.8 35 0.0012 21.8 2.7 47 97-145 30-77 (131)
196 2d8v_A Zinc finger FYVE domain 30.7 43 0.0015 19.5 2.7 29 97-130 9-38 (67)
197 2xqn_T Testin, TESS; metal-bin 30.3 47 0.0016 21.1 3.2 45 97-146 31-75 (126)
198 1x3h_A Leupaxin; paxillin fami 29.8 29 0.00099 20.1 1.9 38 97-146 16-53 (80)
199 2hf1_A Tetraacyldisaccharide-1 28.8 19 0.00063 21.1 0.9 16 131-146 5-20 (68)
200 3pwf_A Rubrerythrin; non heme 27.8 30 0.001 23.9 2.0 9 135-143 154-162 (170)
201 1b8t_A Protein (CRP1); LIM dom 27.4 43 0.0015 23.1 2.8 11 119-129 54-64 (192)
202 2jr6_A UPF0434 protein NMA0874 25.8 19 0.00063 21.1 0.5 17 130-146 4-20 (68)
203 2rsd_A E3 SUMO-protein ligase 25.4 30 0.001 19.9 1.4 44 97-142 11-64 (68)
204 2lq6_A Bromodomain-containing 25.3 34 0.0012 20.9 1.7 33 97-130 18-51 (87)
205 2jtn_A LIM domain-binding prot 24.8 66 0.0023 22.0 3.3 26 119-146 106-131 (182)
206 2fiy_A Protein FDHE homolog; F 24.7 4.5 0.00015 31.1 -3.0 48 95-143 181-231 (309)
207 1rut_X Flinc4, fusion protein 24.3 47 0.0016 22.9 2.5 47 97-145 33-80 (188)
208 2akl_A PHNA-like protein PA012 23.8 30 0.001 23.1 1.2 27 97-123 28-55 (138)
209 3kv4_A PHD finger protein 8; e 23.8 46 0.0016 26.8 2.6 45 99-143 7-56 (447)
210 1lko_A Rubrerythrin all-iron(I 23.6 26 0.00089 24.6 1.0 9 135-143 172-180 (191)
211 2js4_A UPF0434 protein BB2007; 22.1 19 0.00065 21.2 0.0 17 130-146 4-20 (70)
212 1l8d_A DNA double-strand break 21.2 24 0.00082 22.2 0.4 11 135-145 48-58 (112)
213 1yuz_A Nigerythrin; rubrythrin 20.7 50 0.0017 23.4 2.0 9 135-143 187-195 (202)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.77 E-value=4e-19 Score=115.38 Aligned_cols=79 Identities=24% Similarity=0.666 Sum_probs=67.9
Q ss_pred CCCCCCCCCccccCCCceeecCCCCCCCCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 67 EETQGLCPQELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 67 ~~~~~~~~~~i~~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
....+++++.+. .||...+............|+||++.+..++.+..++ |||.||..||.+|+..+.+||+||+++..
T Consensus 12 ~~~~~~s~~~i~-~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESID-ALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHH-TSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHH-hCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 455677777777 9999988876655556688999999999888888898 99999999999999999999999999876
Q ss_pred C
Q 042258 147 N 147 (152)
Q Consensus 147 ~ 147 (152)
.
T Consensus 90 ~ 90 (91)
T 2l0b_A 90 P 90 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.5e-18 Score=106.01 Aligned_cols=70 Identities=31% Similarity=0.772 Sum_probs=58.9
Q ss_pred CccccCCCceeecCCCCCCCCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 75 QELPVSLPQMSYKNGETEMTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 75 ~~i~~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
..+. ++|..++.... .......|+||++.+..++.+..++ |+|.||..||.+|+..+.+||+||+++...
T Consensus 4 ~~i~-~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSG-QLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCS-SCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHh-hCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3344 88888887654 3345578999999999888888898 999999999999999999999999998764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.66 E-value=7e-17 Score=94.92 Aligned_cols=51 Identities=37% Similarity=1.024 Sum_probs=45.8
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLC 145 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~ 145 (152)
++.+|+||++.+..++....+++|||.||..|+.+|++++.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 446899999999888877788779999999999999999999999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=97.26 Aligned_cols=57 Identities=39% Similarity=0.936 Sum_probs=50.0
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccCCCCC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRNLELD 151 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~ 151 (152)
.....|+||++.+..++.+..++ |||.||..|+.+|+..+.+||+||+++...+..+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 68 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSE 68 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcCCCC
Confidence 34478999999998877888888 9999999999999999999999999998876543
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=97.49 Aligned_cols=56 Identities=36% Similarity=0.856 Sum_probs=49.4
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccCCCC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRNLEL 150 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~ 150 (152)
.....|+||++.+..+..+..++ |+|.||..||.+|++.+.+||+||+++.....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 34578999999998888888888 999999999999999999999999999876554
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=1.2e-15 Score=95.87 Aligned_cols=54 Identities=41% Similarity=1.010 Sum_probs=47.8
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccCC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRNL 148 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 148 (152)
....+|+||++.|..+..+..++ |+|.||..||.+|+..+.+||+||+++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 34478999999998888778888 9999999999999999999999999987654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1e-15 Score=97.21 Aligned_cols=51 Identities=31% Similarity=0.806 Sum_probs=41.6
Q ss_pred CccCccccccccC-----------CCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 96 NTDCAICLDDFIE-----------GETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 96 ~~~C~IC~~~~~~-----------~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
+..|+||++.+.+ ++.++.+++|+|.||..||.+|+..+.+||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 4568888887754 34456666699999999999999999999999998754
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.54 E-value=3.3e-15 Score=87.58 Aligned_cols=50 Identities=32% Similarity=0.908 Sum_probs=42.5
Q ss_pred CCccCccccccccCCC-eeeecCCCCccccHHhHHHHHhCCCCCCCcCccCc
Q 042258 95 SNTDCAICLDDFIEGE-TCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLC 145 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~ 145 (152)
....|+||++.+.+++ ....++ |+|.||..|+.+|+..+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3468999999996644 456666 9999999999999999999999999874
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.52 E-value=6.9e-15 Score=90.54 Aligned_cols=54 Identities=30% Similarity=0.706 Sum_probs=44.8
Q ss_pred CCCccCccccccccCC----CeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccCC
Q 042258 94 TSNTDCAICLDDFIEG----ETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRNL 148 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 148 (152)
.....|+||++.+.+. +....++ |||.||..|+.+|+..+.+||+||+++..+-
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 3457899999998653 3445666 9999999999999999999999999987653
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=88.86 Aligned_cols=52 Identities=31% Similarity=0.742 Sum_probs=43.5
Q ss_pred CCCccCccccccccCC----CeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 94 TSNTDCAICLDDFIEG----ETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
.....|+||++.+.+. +.+..++ |||.||..|+.+|+..+..||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3457899999999653 3345666 99999999999999999999999999865
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.50 E-value=2.1e-14 Score=96.34 Aligned_cols=53 Identities=26% Similarity=0.676 Sum_probs=41.8
Q ss_pred CCccCccccccccCCC---------------eeeecCCCCccccHHhHHHHH-----hCCCCCCCcCccCccCC
Q 042258 95 SNTDCAICLDDFIEGE---------------TCKSFPECNHIFHLHCIDQWL-----KHRLNCPVCRNPLCRNL 148 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~CR~~l~~~~ 148 (152)
.+..|+||++.|..+. .+..++ |+|.||..||.+|+ ..+.+||+||+.+..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 3468999999996543 223555 99999999999999 45779999999887654
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.47 E-value=1.5e-14 Score=87.10 Aligned_cols=51 Identities=31% Similarity=0.732 Sum_probs=43.1
Q ss_pred CccCccccccccCC----CeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 96 NTDCAICLDDFIEG----ETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 96 ~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
..+|+||++.+.++ +.+..++ |||.||..|+.+|+..+.+||+||+++..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 36799999999653 3445666 999999999999999999999999998764
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.47 E-value=3.6e-14 Score=94.38 Aligned_cols=49 Identities=41% Similarity=0.844 Sum_probs=40.7
Q ss_pred CCccCccccccccCC-------------C--eeeecCCCCccccHHhHHHHHhCCCCCCCcCccC
Q 042258 95 SNTDCAICLDDFIEG-------------E--TCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPL 144 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~-------------~--~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l 144 (152)
.+..|+||++.|... + .+..++ |+|.||..||.+||..+.+||+||+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 447899999998754 1 244465 999999999999999999999999984
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=85.41 Aligned_cols=54 Identities=28% Similarity=0.557 Sum_probs=44.2
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccCCCC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRNLEL 150 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~ 150 (152)
.....|+||++.+.+. ..+.+|||.||..||..|+..+..||+||+++...-.+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 3457899999998653 45523999999999999999999999999998765443
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6e-14 Score=88.79 Aligned_cols=54 Identities=26% Similarity=0.631 Sum_probs=44.0
Q ss_pred CCCccCccccccccCCCeeeecCCCC-----ccccHHhHHHHHhCC--CCCCCcCccCccCCC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECN-----HIFHLHCIDQWLKHR--LNCPVCRNPLCRNLE 149 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~~--~~CP~CR~~l~~~~~ 149 (152)
.....|.||++++..++.+ .+| |+ |.||..||.+|+..+ .+||+||+++.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 4457899999999776665 577 96 999999999999865 589999999875443
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.2e-14 Score=87.42 Aligned_cols=51 Identities=37% Similarity=0.914 Sum_probs=43.8
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccCCC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRNLE 149 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 149 (152)
.....|+||++.+.+ ..++ |||.||..|+.+|+..+..||+||+++.....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 345789999999865 5677 99999999999999999999999999886543
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.5e-14 Score=86.43 Aligned_cols=49 Identities=29% Similarity=0.716 Sum_probs=42.3
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
....|+||++.+.+. ..++ |||.||..|+.+|+..+..||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 14 TVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 447899999998553 5677 999999999999999999999999998754
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.42 E-value=9.4e-14 Score=84.79 Aligned_cols=50 Identities=32% Similarity=0.855 Sum_probs=42.1
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
.+..|+||++.+.++ ...++ |||.||..|+.+|+..+.+||+||+++...
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 346799999998543 35677 999999999999999999999999988653
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.2e-13 Score=86.28 Aligned_cols=53 Identities=25% Similarity=0.651 Sum_probs=43.8
Q ss_pred CCCccCccccccccCCCe-eeecCCCCccccHHhHHHHHhCC---CCCCCcCccCccC
Q 042258 94 TSNTDCAICLDDFIEGET-CKSFPECNHIFHLHCIDQWLKHR---LNCPVCRNPLCRN 147 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~~~---~~CP~CR~~l~~~ 147 (152)
.....|+||++.+.+.+. ...++ |||.||..|+..|+..+ ..||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 345789999999977554 56677 99999999999999875 7899999977543
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.40 E-value=1.4e-14 Score=97.83 Aligned_cols=50 Identities=38% Similarity=0.874 Sum_probs=0.9
Q ss_pred CCccCccccccccCC-------------Ce-eeecCCCCccccHHhHHHHHhCCCCCCCcCccC
Q 042258 95 SNTDCAICLDDFIEG-------------ET-CKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPL 144 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~-------------~~-~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l 144 (152)
.+..|+||++.|... +. .+.+++|+|.||..||.+||..+.+||+||+++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 447899999999652 11 222234999999999999999999999999984
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.3e-13 Score=81.47 Aligned_cols=50 Identities=20% Similarity=0.527 Sum_probs=41.4
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHh-CCCCCCCcCccCccC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK-HRLNCPVCRNPLCRN 147 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~CR~~l~~~ 147 (152)
.....|+||++.+.++ ..++ |||.||..|+.+|+. .+..||+||+++..+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3457899999999665 3466 999999999999995 577899999998764
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.2e-13 Score=84.76 Aligned_cols=48 Identities=23% Similarity=0.505 Sum_probs=41.3
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
....|+||++.+.++ ..++ |||.||..|+..|+.....||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 14 IPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 347899999998553 4576 99999999999999999999999999863
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.38 E-value=4.1e-13 Score=83.50 Aligned_cols=50 Identities=24% Similarity=0.524 Sum_probs=41.1
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCC--CCCCCcCccCcc
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHR--LNCPVCRNPLCR 146 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~CR~~l~~ 146 (152)
.....|+||++.+.++ ..++.|||.||..||..|+..+ ..||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3457899999999664 4465599999999999999865 689999998654
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=7e-13 Score=81.89 Aligned_cols=50 Identities=32% Similarity=0.711 Sum_probs=41.2
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHh---CCCCCCCcCccCccC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK---HRLNCPVCRNPLCRN 147 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~CR~~l~~~ 147 (152)
.....|+||++.+.+ ...++ |||.||..|+..|+. ....||+||+++..+
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 445789999999864 35566 999999999999997 466899999998654
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.38 E-value=2.7e-13 Score=94.06 Aligned_cols=46 Identities=37% Similarity=1.023 Sum_probs=40.7
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
..|+||++.+.+ ...++ |||.||..||..|+..+.+||+||+++..
T Consensus 54 ~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 579999999955 36677 99999999999999999999999998864
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.35 E-value=8.1e-13 Score=82.73 Aligned_cols=51 Identities=18% Similarity=0.419 Sum_probs=42.7
Q ss_pred CCCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC-CCCCCCcCccCccC
Q 042258 93 MTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH-RLNCPVCRNPLCRN 147 (152)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~l~~~ 147 (152)
......|+||++.+.++ ..++ |||.||..||.+|+.. +.+||+||+++...
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 34557899999999654 5567 9999999999999987 78899999988643
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=3e-12 Score=80.98 Aligned_cols=50 Identities=38% Similarity=0.696 Sum_probs=42.0
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC------CCCCCCcCccCccC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH------RLNCPVCRNPLCRN 147 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~CR~~l~~~ 147 (152)
.....|+||++.+.++ ..++ |||.||..|+..|+.. ...||+||.++...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 3457899999998665 4677 9999999999999987 67899999988653
No 28
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=81.24 Aligned_cols=48 Identities=27% Similarity=0.782 Sum_probs=41.0
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCC--CCCCCcCccCccC
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHR--LNCPVCRNPLCRN 147 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~CR~~l~~~ 147 (152)
.+|+||.+.+..++.+. .|+|.||..||.+||+++ .+||+||++....
T Consensus 16 ~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp CBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 78999999998764433 599999999999999987 8999999987644
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=1.5e-12 Score=78.84 Aligned_cols=51 Identities=24% Similarity=0.558 Sum_probs=40.3
Q ss_pred CccCccccc-cccCCCee-eecCCCCccccHHhHHHHHhC-CCCCCCcCccCccC
Q 042258 96 NTDCAICLD-DFIEGETC-KSFPECNHIFHLHCIDQWLKH-RLNCPVCRNPLCRN 147 (152)
Q Consensus 96 ~~~C~IC~~-~~~~~~~~-~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~l~~~ 147 (152)
+..|+||++ .+.++... ..++ |||.||..|+.+|+.+ +..||+||+++..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 357999999 77665443 3455 9999999999999765 56899999998654
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.31 E-value=8.6e-13 Score=90.07 Aligned_cols=53 Identities=30% Similarity=0.733 Sum_probs=44.4
Q ss_pred CCCccCccccccccCC----CeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 94 TSNTDCAICLDDFIEG----ETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
.+..+|+||++.+.++ +....++ |||.||..||.+|+..+.+||+||+++..+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3457899999999653 3446676 999999999999999999999999988754
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=86.12 Aligned_cols=48 Identities=29% Similarity=0.810 Sum_probs=40.6
Q ss_pred CccCccccccccCCCeeee-cCCCCccccHHhHHHHHhCC-CCCCCcCccCccC
Q 042258 96 NTDCAICLDDFIEGETCKS-FPECNHIFHLHCIDQWLKHR-LNCPVCRNPLCRN 147 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~-l~~C~H~fh~~Ci~~wl~~~-~~CP~CR~~l~~~ 147 (152)
...|+||++.+.+ ... ++ |||.||..||.+|+..+ ..||+||+++...
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 3679999999954 355 66 99999999999999987 6999999998643
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.30 E-value=7.5e-13 Score=82.91 Aligned_cols=49 Identities=31% Similarity=0.613 Sum_probs=41.2
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC-------CCCCCCcCccCcc
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH-------RLNCPVCRNPLCR 146 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-------~~~CP~CR~~l~~ 146 (152)
.....|+||++.+.++ ..++ |||.||..|+..|+.. ...||+||.++..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3457899999999664 4567 9999999999999986 6789999998864
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=4e-12 Score=80.38 Aligned_cols=50 Identities=30% Similarity=0.660 Sum_probs=41.8
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC------CCCCCCcCccCccC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH------RLNCPVCRNPLCRN 147 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~CR~~l~~~ 147 (152)
.....|+||++.+.+. ..++ |||.||..|+..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3457899999999664 4566 9999999999999987 78999999988753
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.8e-12 Score=84.80 Aligned_cols=48 Identities=27% Similarity=0.706 Sum_probs=40.8
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
...|+||++.+.++ ..+++|||.||..|+..|+..+..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 36899999999653 4553499999999999999999999999998864
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=6.4e-12 Score=75.48 Aligned_cols=43 Identities=35% Similarity=0.763 Sum_probs=36.2
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHh---CCCCCCCc
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK---HRLNCPVC 140 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~C 140 (152)
.....|+||++.+.++ ..++ |||.||..||.+|+. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4457899999999654 5566 999999999999998 46689998
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.27 E-value=6e-12 Score=81.11 Aligned_cols=49 Identities=24% Similarity=0.540 Sum_probs=40.3
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC--CCCCCCcCccCc
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH--RLNCPVCRNPLC 145 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~CP~CR~~l~ 145 (152)
.....|+||++.+.++ ..++.|||.||..||..|+.. ...||+||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4557899999999664 456559999999999999974 468999999973
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.26 E-value=3e-12 Score=85.08 Aligned_cols=49 Identities=27% Similarity=0.697 Sum_probs=42.0
Q ss_pred CCccCccccccccCCCeeeec-CCCCccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 95 SNTDCAICLDDFIEGETCKSF-PECNHIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
....|+||++.+.++ ..+ + |||.||..||..|+..+..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc---CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 447899999998553 455 6 999999999999999999999999998764
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7.9e-12 Score=73.64 Aligned_cols=43 Identities=33% Similarity=0.899 Sum_probs=35.5
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHH---hCCCCCCCc
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWL---KHRLNCPVC 140 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~~~~~CP~C 140 (152)
.....|+||++.+.++ ..++ |||.||..||.+|+ ..+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3457899999999765 4566 99999999999995 457789998
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.24 E-value=7.5e-12 Score=85.09 Aligned_cols=47 Identities=26% Similarity=0.644 Sum_probs=40.0
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHHHhCC-CCCCCcCccCcc
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHR-LNCPVCRNPLCR 146 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~CR~~l~~ 146 (152)
...|+||++.+.++ ..++ |||.||..||..|+..+ ..||+||+++..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 36799999999653 5677 99999999999999854 489999999876
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=4.7e-12 Score=86.35 Aligned_cols=53 Identities=30% Similarity=0.733 Sum_probs=44.0
Q ss_pred CCCccCccccccccCC----CeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 94 TSNTDCAICLDDFIEG----ETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
.....|+||++.+... .....++ |||.||..|+.+|+..+++||+||+++..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 3457899999998652 2335566 999999999999999999999999998765
No 41
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.22 E-value=2.8e-12 Score=100.22 Aligned_cols=56 Identities=23% Similarity=0.644 Sum_probs=43.6
Q ss_pred CCCccCccccccccCCCee----eecCCCCccccHHhHHHHHhCC-----------CCCCCcCccCccCCC
Q 042258 94 TSNTDCAICLDDFIEGETC----KSFPECNHIFHLHCIDQWLKHR-----------LNCPVCRNPLCRNLE 149 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~----~~l~~C~H~fh~~Ci~~wl~~~-----------~~CP~CR~~l~~~~~ 149 (152)
....+|+||++.+.++..+ ...++|+|.||..|+.+|+++. .+||+||+++..+++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 3457899999999873222 2234699999999999999752 469999999998875
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=1e-11 Score=82.67 Aligned_cols=47 Identities=34% Similarity=0.842 Sum_probs=39.6
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCC---CCCCcCccCccC
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRL---NCPVCRNPLCRN 147 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~---~CP~CR~~l~~~ 147 (152)
..|+||++.+.++ ..++ |||.||..|+..|+..+. .||+||.++...
T Consensus 22 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 22 LECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp TSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 5799999998654 4466 999999999999998754 899999988753
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.18 E-value=1.5e-11 Score=87.51 Aligned_cols=49 Identities=37% Similarity=0.697 Sum_probs=40.3
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC-CCCCCCcCccCcc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH-RLNCPVCRNPLCR 146 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~l~~ 146 (152)
....|+||++.+.++ ..+.+|||.||..||..|+.. +..||+||.++..
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 346899999998653 444239999999999999997 7889999999853
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.17 E-value=1.7e-11 Score=86.16 Aligned_cols=48 Identities=25% Similarity=0.593 Sum_probs=40.9
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCC-CCCCcCccCccC
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRL-NCPVCRNPLCRN 147 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~CR~~l~~~ 147 (152)
...|+||++.+.++ ..++ |||.||..||..|+.... .||+||.++...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 36899999998554 5577 999999999999998754 899999998865
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.16 E-value=1.2e-11 Score=83.50 Aligned_cols=50 Identities=34% Similarity=0.626 Sum_probs=41.8
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCC-CCCCcCccCccC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRL-NCPVCRNPLCRN 147 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~CR~~l~~~ 147 (152)
.....|+||++.+.++ ..++ |||.||..||.+|+..+. .||+||.++...
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4457899999998654 5566 999999999999998765 999999988753
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.16 E-value=4.7e-12 Score=84.99 Aligned_cols=46 Identities=30% Similarity=0.852 Sum_probs=39.8
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHHHhC-CCCCCCcCccCc
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH-RLNCPVCRNPLC 145 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~l~ 145 (152)
+..|+||++.+.++ ..++ |||.||..|+..|+.. +..||+||.++.
T Consensus 15 ~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 47899999999654 5677 9999999999999976 678999999875
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.14 E-value=1.8e-11 Score=74.06 Aligned_cols=50 Identities=26% Similarity=0.546 Sum_probs=41.0
Q ss_pred CCccCccccccccCCCeeeec--CCCCcc-ccHHhHHHHHhCCCCCCCcCccCccCC
Q 042258 95 SNTDCAICLDDFIEGETCKSF--PECNHI-FHLHCIDQWLKHRLNCPVCRNPLCRNL 148 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l--~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 148 (152)
.+..|+||++...+. ..+ | |||. |+..|+..|...+..||+||+++....
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 59 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 59 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCEEE
T ss_pred CcCCCCcCCCCCCCE---EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhceE
Confidence 346799999987443 333 7 9999 899999999999999999999986543
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.13 E-value=3.6e-11 Score=95.91 Aligned_cols=51 Identities=25% Similarity=0.670 Sum_probs=43.3
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHHHh-CCCCCCCcCccCccCCCC
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK-HRLNCPVCRNPLCRNLEL 150 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~CR~~l~~~~~~ 150 (152)
...|+||++.+.+ ...++ |||.||..|+..|+. .+.+||+||+++.....+
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 3689999999844 46677 999999999999999 788999999998876544
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.12 E-value=5e-11 Score=76.03 Aligned_cols=51 Identities=12% Similarity=0.088 Sum_probs=43.8
Q ss_pred CCCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 93 MTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
.+....|+||++.+.++ ..++ |||.|++.||.+|+..+.+||+||.++...
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 34557899999999664 6677 999999999999999889999999988654
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.12 E-value=3.5e-11 Score=80.78 Aligned_cols=48 Identities=31% Similarity=0.648 Sum_probs=40.7
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHHHhC-CCCCCCcCccCccC
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH-RLNCPVCRNPLCRN 147 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~l~~~ 147 (152)
...|+||++.+.++ ..++ |||.||..||.+|+.. ...||+||+++...
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 36899999998553 5566 9999999999999986 77999999998753
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.11 E-value=6e-11 Score=77.94 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=44.1
Q ss_pred CCCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 93 MTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
.+....|+||++.|.++ ..++ |||.|++.||.+|+..+.+||+||.++...
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 34558899999999665 6677 999999999999999899999999998754
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.09 E-value=1.4e-10 Score=72.78 Aligned_cols=54 Identities=17% Similarity=0.462 Sum_probs=40.4
Q ss_pred CCCccCccccccccCCCe-eeecCCCCccccHHhHHHHHhC-CCCCCCcCccCccCC
Q 042258 94 TSNTDCAICLDDFIEGET-CKSFPECNHIFHLHCIDQWLKH-RLNCPVCRNPLCRNL 148 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~l~~~~ 148 (152)
....+|+||++.+...+. ...++ |||.||..|+..++.. ...||.||+++....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 344789999998854322 22234 9999999999998754 678999999887643
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.08 E-value=3.6e-11 Score=72.46 Aligned_cols=51 Identities=20% Similarity=0.483 Sum_probs=40.4
Q ss_pred CccCccccccccCCCeeeecCCCCcc-ccHHhHHHHHhCCCCCCCcCccCccCC
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHI-FHLHCIDQWLKHRLNCPVCRNPLCRNL 148 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 148 (152)
...|.||++...+. .+..+| |||. |+..|+..|...+..||+||+++....
T Consensus 7 ~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 58 (63)
T 2vje_B 7 LKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQLVI 58 (63)
T ss_dssp GSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCEEE
T ss_pred CCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhceE
Confidence 36799999986442 112237 9998 999999999988899999999986543
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.08 E-value=1.3e-10 Score=75.98 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=43.4
Q ss_pred CCCccCccccccccCCCeeeecCCCC-ccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECN-HIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
+....|+||++.|.++ ..++ || |.|++.||.+|+..+.+||+||.++...
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 4557899999999665 6677 99 9999999999999989999999998754
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.08 E-value=2.4e-11 Score=84.62 Aligned_cols=49 Identities=18% Similarity=0.425 Sum_probs=40.5
Q ss_pred CCCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCC-CCCCcCccCc
Q 042258 93 MTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRL-NCPVCRNPLC 145 (152)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~CR~~l~ 145 (152)
......|+||++.+.++ ..++ |||.||..||.+|+.... .||+||.++.
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 34557899999999665 5566 999999999999998654 8999999763
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.03 E-value=6.2e-11 Score=73.59 Aligned_cols=47 Identities=26% Similarity=0.631 Sum_probs=39.2
Q ss_pred CccCccccccccCCCeeeecCCCCcc-ccHHhHHHHHhCCCCCCCcCccCccCCCC
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHI-FHLHCIDQWLKHRLNCPVCRNPLCRNLEL 150 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~ 150 (152)
...|+||++.+.+ ...+| |||. ||..|+..| ..||+||+++.....+
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i 71 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFKQKI 71 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEEEEC
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccCcEEE
Confidence 3679999998744 46677 9999 999999998 8999999998876543
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=1.1e-10 Score=68.65 Aligned_cols=46 Identities=24% Similarity=0.601 Sum_probs=38.0
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
....|+||++.+.+. ..++ |||.||..|+..| ...||+||+++...
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 346799999999764 5677 9999999999884 67899999988643
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=1e-10 Score=78.68 Aligned_cols=45 Identities=29% Similarity=0.691 Sum_probs=38.5
Q ss_pred CccCccccccccCCCeeeec-CCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 96 NTDCAICLDDFIEGETCKSF-PECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
...|+||++.+.++ ..+ + |||.||..||..|+. ..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 36799999999654 556 5 999999999999987 889999998854
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.90 E-value=5.4e-10 Score=79.69 Aligned_cols=50 Identities=34% Similarity=0.642 Sum_probs=41.7
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCC-CCCCCcCccCccC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHR-LNCPVCRNPLCRN 147 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~CR~~l~~~ 147 (152)
.....|+||++.+.++ ..++ |||.||..|+.+|+..+ ..||+||.++..+
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4557899999999654 5576 99999999999999864 4999999988764
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=8.1e-10 Score=68.60 Aligned_cols=47 Identities=26% Similarity=0.635 Sum_probs=38.1
Q ss_pred CccCccccccccCCCeeeecCCCCcc-ccHHhHHHHHhCCCCCCCcCccCccCCCC
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHI-FHLHCIDQWLKHRLNCPVCRNPLCRNLEL 150 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~ 150 (152)
...|+||++.+.+ ...+| |||. ||..|+.. ...||+||+++.....|
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~~~i 72 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFKQKI 72 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCCCBC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCcEEE
Confidence 3679999998754 35577 9999 99999965 47899999999876654
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=8.2e-10 Score=83.90 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=42.0
Q ss_pred CCCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC-CCCCCCcCccCccC
Q 042258 93 MTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH-RLNCPVCRNPLCRN 147 (152)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~l~~~ 147 (152)
.+....|+||++.+.++ .+++ |||.||+.||..|+.. ..+||+||.++...
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CCcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 34557899999999664 6677 9999999999999986 44599999998643
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=9e-10 Score=71.39 Aligned_cols=47 Identities=21% Similarity=0.504 Sum_probs=38.2
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCC------CCCCC--cCcc
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHR------LNCPV--CRNP 143 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~------~~CP~--CR~~ 143 (152)
.....|+||++.|.++ ..++.|||.|++.||..|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3457899999999654 5564599999999999999753 58999 9866
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2e-09 Score=65.67 Aligned_cols=48 Identities=25% Similarity=0.711 Sum_probs=39.0
Q ss_pred CCccCccccccccCCCeeeecCCCCcc-ccHHhHHHHHhCCCCCCCcCccCccCCCC
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHI-FHLHCIDQWLKHRLNCPVCRNPLCRNLEL 150 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~ 150 (152)
....|.||++...+ +..+| |||. ||..|+.. ...||+||+++...+.+
T Consensus 14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~~i 62 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESFAL 62 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEECC
T ss_pred CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceEEe
Confidence 34679999998744 46677 9999 99999985 57899999999876654
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.75 E-value=4.9e-09 Score=75.53 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=42.2
Q ss_pred CCCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCC-CCCCCcCccCccC
Q 042258 93 MTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHR-LNCPVCRNPLCRN 147 (152)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~CR~~l~~~ 147 (152)
.+....|+||++.|.++ ..++ |||.|++.||..|+..+ .+||+||.++...
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CcHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 45558899999999654 6677 99999999999999863 4699999988654
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.75 E-value=2.5e-09 Score=67.17 Aligned_cols=44 Identities=30% Similarity=0.668 Sum_probs=36.5
Q ss_pred ccCccccccccCCCeeeecCCCCcc-ccHHhHHHHHhCCCCCCCcCccCccCC
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHI-FHLHCIDQWLKHRLNCPVCRNPLCRNL 148 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 148 (152)
..|+||++.+.+ ...+| |||. ||..|+..| ..||+||.++....
T Consensus 19 ~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 19 MLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHVQ 63 (79)
T ss_dssp TBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEEE
T ss_pred CEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCeE
Confidence 579999998743 46677 9999 999999886 49999999887654
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.74 E-value=6.8e-09 Score=61.82 Aligned_cols=47 Identities=23% Similarity=0.588 Sum_probs=36.2
Q ss_pred CCccCccccccccCCCeeeecCCCC--c---cccHHhHHHHHhC--CCCCCCcCccCc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECN--H---IFHLHCIDQWLKH--RLNCPVCRNPLC 145 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~--H---~fh~~Ci~~wl~~--~~~CP~CR~~l~ 145 (152)
....|.||+++. ++.. .+| |. | .||..|+.+|+.. +.+||+||+++.
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 447899999873 2233 466 65 3 8999999999974 678999999875
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=6.9e-09 Score=67.02 Aligned_cols=48 Identities=23% Similarity=0.708 Sum_probs=38.2
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC--------CCCCCC--cCcc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH--------RLNCPV--CRNP 143 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~--CR~~ 143 (152)
...+|+||++.+..++.....+ |||.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3467999999987665544445 9999999999999863 247999 9987
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.58 E-value=8.4e-09 Score=81.38 Aligned_cols=48 Identities=23% Similarity=0.702 Sum_probs=39.6
Q ss_pred CCccCccccccccCCCeeeecCCCCcc-ccHHhHHHHHhCCCCCCCcCccCccCCCC
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHI-FHLHCIDQWLKHRLNCPVCRNPLCRNLEL 150 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~ 150 (152)
....|+||++.+.+ ...+| |||. ||..|+..| ..||+||.++.....+
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i 342 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKGTVRT 342 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCEEEEC
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccCeEEe
Confidence 34689999999844 46677 9999 999999988 7899999998876543
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.54 E-value=2.9e-08 Score=75.13 Aligned_cols=49 Identities=22% Similarity=0.503 Sum_probs=38.9
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCC--CCCCC--cCccCcc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHR--LNCPV--CRNPLCR 146 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~--CR~~l~~ 146 (152)
....|+||++.|.++ ....+|||.|++.||..|+..+ ..||+ ||..+..
T Consensus 180 ~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 347899999999654 3332499999999999999864 47999 9997654
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.50 E-value=3.4e-08 Score=58.91 Aligned_cols=49 Identities=24% Similarity=0.284 Sum_probs=41.1
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccCC
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRNL 148 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 148 (152)
..|+||.+.+.++ ..++++||.|.+.||.+|+..+.+||+.+.+|..+-
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 5699999999654 555249999999999999998888999999987654
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.25 E-value=1.2e-06 Score=65.72 Aligned_cols=49 Identities=27% Similarity=0.661 Sum_probs=39.7
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHHHhCC--CCCCCcCccCccC
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHR--LNCPVCRNPLCRN 147 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~CR~~l~~~ 147 (152)
-..|.||.+-...+. ..+.|+|.||..|+.+|++++ ..||.|+.+.+..
T Consensus 180 i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 378999999987663 344599999999999999875 4899999976544
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.14 E-value=1.7e-06 Score=55.93 Aligned_cols=46 Identities=28% Similarity=0.561 Sum_probs=36.3
Q ss_pred cCccccccccCCCeeeecCCCCccccHHhHHHHHh-CCCCCCCcCccCcc
Q 042258 98 DCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK-HRLNCPVCRNPLCR 146 (152)
Q Consensus 98 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~CR~~l~~ 146 (152)
.|++|--.+.. ..+..| |+|.||.+|+..|.. +.++||.|+.++.+
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47788666533 346777 999999999999985 47899999998754
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.56 E-value=5.3e-05 Score=48.23 Aligned_cols=54 Identities=24% Similarity=0.468 Sum_probs=44.1
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccCCCCCC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRNLELDV 152 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~ 152 (152)
-+...|.-|+-.. +.++.. ..|.+|..|+...|..+..||+|..+|+.++.+++
T Consensus 26 ~G~~nCKsCWf~~---k~LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~ 79 (99)
T 2ko5_A 26 LGPQFCKSCWFEN---KGLVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSA 79 (99)
T ss_dssp SCCCCCCSSCSCC---SSEEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTT
T ss_pred cCcccChhhcccc---CCeeee--cchhhHHHHHHHHHhhccCCcccCCcCCcceecCc
Confidence 3447899998765 333432 46999999999999999999999999999998864
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.10 E-value=0.0053 Score=36.67 Aligned_cols=46 Identities=24% Similarity=0.550 Sum_probs=34.2
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCC----CCCCCcCccC
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHR----LNCPVCRNPL 144 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~CR~~l 144 (152)
.+..|.||.+. ..+.....|...||..|+.+.+... =.||.|++..
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 44679999743 3455566799999999999887653 3699998653
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.89 E-value=0.023 Score=36.25 Aligned_cols=34 Identities=15% Similarity=0.359 Sum_probs=24.2
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHH-HH
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQ-WL 131 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~-wl 131 (152)
..|.||.+.+.......-+. |+|.|+..|+.. |.
T Consensus 4 ~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATHP 38 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHSC
T ss_pred CCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHhc
Confidence 56999997643322223366 999999999998 53
No 76
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=94.76 E-value=0.01 Score=42.59 Aligned_cols=50 Identities=16% Similarity=0.400 Sum_probs=36.8
Q ss_pred CccCccccccccCCC---eeeecCCCCccccHHhHHH------HHh-----CCCCCCCcCccCc
Q 042258 96 NTDCAICLDDFIEGE---TCKSFPECNHIFHLHCIDQ------WLK-----HRLNCPVCRNPLC 145 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~---~~~~l~~C~H~fh~~Ci~~------wl~-----~~~~CP~CR~~l~ 145 (152)
+..|+||...+.+++ ..+....|...||..|+.- -+. ..-.||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 356999999987765 3677777999999999742 111 1568999987644
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.53 E-value=0.0053 Score=36.20 Aligned_cols=49 Identities=24% Similarity=0.571 Sum_probs=35.9
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHh-----CCCCCCCcCcc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK-----HRLNCPVCRNP 143 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~CR~~ 143 (152)
+...|++|...+.++...+....|...||..|+.--.. ..-.||.|+.+
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 44679999988765566666667999999999864321 34569999764
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.53 E-value=0.061 Score=31.33 Aligned_cols=46 Identities=20% Similarity=0.639 Sum_probs=33.0
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC----CCCCCCcCcc
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----RLNCPVCRNP 143 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~~ 143 (152)
..+..|.+|... ..+.....|...||..|+..-+.. .=.||.|++.
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 344679999763 345555669999999999985543 3359999764
No 79
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=92.61 E-value=0.11 Score=30.79 Aligned_cols=34 Identities=21% Similarity=0.533 Sum_probs=27.2
Q ss_pred CCccCccccccccCCCeeeecC-CCCccccHHhHH
Q 042258 95 SNTDCAICLDDFIEGETCKSFP-ECNHIFHLHCID 128 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~ 128 (152)
....|.+|...+.+++..+... .|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3467999999987777777776 799999999974
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=92.56 E-value=0.052 Score=32.85 Aligned_cols=51 Identities=20% Similarity=0.472 Sum_probs=36.7
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC----CCCCCCcCccCcc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----RLNCPVCRNPLCR 146 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~~l~~ 146 (152)
....|.+|.... +++..+....|...||..|+..-... .-.||.|+..+.+
T Consensus 17 ~~~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 336699997764 44556666679999999999765432 3469999877654
No 81
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.55 E-value=0.17 Score=30.87 Aligned_cols=47 Identities=19% Similarity=0.464 Sum_probs=33.6
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHh-----CCCCCCCcCccC
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK-----HRLNCPVCRNPL 144 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~CR~~l 144 (152)
..| ||...+..+...+....|...||..|+.---. ....||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 457 89887754555666667999999999853211 356799998764
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=91.14 E-value=0.05 Score=31.73 Aligned_cols=49 Identities=24% Similarity=0.609 Sum_probs=33.7
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC----CCCCCCcCccCcc
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----RLNCPVCRNPLCR 146 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~~l~~ 146 (152)
..+..|.+|.+. ..+.....|...||..|+.+-+.. .=.||.|+....+
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence 344679999752 344455569999999999865443 2359999876543
No 83
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=90.94 E-value=0.071 Score=29.97 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=31.5
Q ss_pred cCccccccccCCCeeeecC-CCCccccHHhHHHHH----hCCCCCCCcC
Q 042258 98 DCAICLDDFIEGETCKSFP-ECNHIFHLHCIDQWL----KHRLNCPVCR 141 (152)
Q Consensus 98 ~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl----~~~~~CP~CR 141 (152)
.|.+|...+.+++..+... .|...||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4788988886666666666 699999999975321 2567799885
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=90.75 E-value=0.085 Score=37.44 Aligned_cols=46 Identities=26% Similarity=0.602 Sum_probs=33.4
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC----CCCCCCcCccC
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----RLNCPVCRNPL 144 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~~l 144 (152)
.+..|.+|... ..+.....|...||..|+.+-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 44679999743 335566679999999998876654 23599998754
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=90.47 E-value=0.11 Score=37.64 Aligned_cols=47 Identities=26% Similarity=0.521 Sum_probs=34.6
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC----CCCCCCcCccCc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----RLNCPVCRNPLC 145 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~~l~ 145 (152)
.+..|.+|... ..+.....|...||..|+.+-+.. .-.||.|+..-.
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 44679999743 456667779999999999876654 235999987543
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.45 E-value=0.18 Score=28.00 Aligned_cols=44 Identities=30% Similarity=0.696 Sum_probs=30.1
Q ss_pred cCccccccccCCCeeeecCCCCccccHHhHHHHHhC----CCCCCCcCc
Q 042258 98 DCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----RLNCPVCRN 142 (152)
Q Consensus 98 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~ 142 (152)
.|.+|...-. ++.+.....|...||..|+.+=+.. .=.||.|+.
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888876532 3345556669999999999764443 234999975
No 87
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.11 E-value=1 Score=27.95 Aligned_cols=36 Identities=17% Similarity=0.525 Sum_probs=23.3
Q ss_pred CCCCccCccccccccCCCeeeecCCCCccccHHhHHHH
Q 042258 93 MTSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQW 130 (152)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 130 (152)
...+..|.||-. +..++.. -.-.|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~~-~t~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEV-WTAESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCC-CCSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcccc-cccccee-ccccccccccHhhcccc
Confidence 345678999952 3232221 12238999999999996
No 88
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=89.19 E-value=0.15 Score=32.00 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=35.0
Q ss_pred CCccCccccccc-cCCCeeeecCCCCccccHHhHHHHHh--CCCCCCCcCccCcc
Q 042258 95 SNTDCAICLDDF-IEGETCKSFPECNHIFHLHCIDQWLK--HRLNCPVCRNPLCR 146 (152)
Q Consensus 95 ~~~~C~IC~~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~CR~~l~~ 146 (152)
.+..|.||...- .+...+.....|.-.||..|+..-+. ..=.||.|......
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 447899998653 23345666667999999999986332 13359999765443
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=88.34 E-value=0.13 Score=33.66 Aligned_cols=46 Identities=26% Similarity=0.588 Sum_probs=31.7
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhC----CCCCCCcCc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----RLNCPVCRN 142 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~ 142 (152)
..|.+|...-.+++.+.....|...||..|+.+-|.. .=.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688887643333455556669999999998765543 235999975
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.17 E-value=0.35 Score=30.35 Aligned_cols=48 Identities=25% Similarity=0.496 Sum_probs=33.9
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC----CCCCCCcCccCc
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----RLNCPVCRNPLC 145 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~~l~ 145 (152)
..+..|.+|... ..+.....|.-.||..|+.+=+.. .=.||.|+....
T Consensus 23 ~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 344679999864 344556669999999999876544 235999986543
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=88.14 E-value=0.029 Score=32.57 Aligned_cols=49 Identities=24% Similarity=0.672 Sum_probs=33.6
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC----CCCCCCcCccCccC
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----RLNCPVCRNPLCRN 147 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~~l~~~ 147 (152)
.+..|.+|... ..+.....|...||..|+.+=+.. .-.||.|+.....+
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence 34679999764 344555569999999999865443 23499997765443
No 92
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.27 E-value=1.9 Score=27.02 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=36.2
Q ss_pred CCccCccccccccC---CCeeeecCCCCccccHHhHHHHHh-CCCCCCCcCccCc
Q 042258 95 SNTDCAICLDDFIE---GETCKSFPECNHIFHLHCIDQWLK-HRLNCPVCRNPLC 145 (152)
Q Consensus 95 ~~~~C~IC~~~~~~---~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~CR~~l~ 145 (152)
....|.||-+..-. ++.......|+--.|+.|..-=.+ .+..||.|++...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34689999988632 333333344788899999875444 4889999999875
No 93
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=86.43 E-value=0.3 Score=31.55 Aligned_cols=48 Identities=17% Similarity=0.425 Sum_probs=33.8
Q ss_pred ccCccccccccCCCeeeecC-CCCccccHHhHHHHH----------hCCCCCCCcCccC
Q 042258 97 TDCAICLDDFIEGETCKSFP-ECNHIFHLHCIDQWL----------KHRLNCPVCRNPL 144 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl----------~~~~~CP~CR~~l 144 (152)
..|.+|...+.+....+... .|...||..|+.--- ...-.||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 56999999986655555554 699999999975221 0245699998653
No 94
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.37 E-value=1.4 Score=27.73 Aligned_cols=44 Identities=27% Similarity=0.656 Sum_probs=28.9
Q ss_pred ccCccccccccCCCeeeecCC--CC-ccccHHhHHHHHhC----CCCCCCcCccCc
Q 042258 97 TDCAICLDDFIEGETCKSFPE--CN-HIFHLHCIDQWLKH----RLNCPVCRNPLC 145 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~CR~~l~ 145 (152)
..| ||.... .+ ..+.... |. ..||..|+. |.. .-.||.|+....
T Consensus 37 ~yC-iC~~~~-~g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 37 TYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp BCS-TTCCBC-CS-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred cEE-ECCCCC-CC-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 557 997754 33 3444555 55 689999987 332 446999987644
No 95
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=85.75 E-value=0.76 Score=40.62 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=42.5
Q ss_pred CCCCccCccccccccCCCeeeecCCCC-ccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 93 MTSNTDCAICLDDFIEGETCKSFPECN-HIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
.+....|||-.+-+.++ ..+| -| +.|-+.+|.+|+.++.+||.=|.+|...
T Consensus 888 iP~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CcHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 45557899999988654 6677 66 6899999999999999999999988754
No 96
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.65 E-value=0.079 Score=30.23 Aligned_cols=44 Identities=27% Similarity=0.714 Sum_probs=30.1
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC----CCCCCCcCc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----RLNCPVCRN 142 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~ 142 (152)
.+..|.+|... ..+.....|...||..|+.+-+.. .-.||.|++
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 44679999864 344555569999999999865443 224887754
No 97
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=85.26 E-value=0.083 Score=31.22 Aligned_cols=45 Identities=27% Similarity=0.688 Sum_probs=31.6
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC----CCCCCCcCcc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----RLNCPVCRNP 143 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~~ 143 (152)
.+..|.+|... ..+.....|...||..|+.+-+.. .=.||.|...
T Consensus 7 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 44679999853 344555669999999999864443 2349998764
No 98
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=84.66 E-value=0.83 Score=26.40 Aligned_cols=43 Identities=19% Similarity=0.428 Sum_probs=31.0
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVC 140 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 140 (152)
..|-.|...+.+. ..-..++|++.|+.+|=.---..=..||.|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999988543 334577899999999955533345679988
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.53 E-value=2.2 Score=27.56 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=24.1
Q ss_pred CCccCccccccc-----cCCCeeeecCCCCccccHHhHH
Q 042258 95 SNTDCAICLDDF-----IEGETCKSFPECNHIFHLHCID 128 (152)
Q Consensus 95 ~~~~C~IC~~~~-----~~~~~~~~l~~C~H~fh~~Ci~ 128 (152)
....|.+|+..- ..++.++.-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 345799998652 1234566666799999999995
No 100
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=83.88 E-value=2 Score=29.27 Aligned_cols=45 Identities=20% Similarity=0.497 Sum_probs=33.0
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHh-----------CCCCCCCcCcc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK-----------HRLNCPVCRNP 143 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----------~~~~CP~CR~~ 143 (152)
.+..|.+|.+. ..+.....|-..||..|+.+=+. ..=.||+|+.+
T Consensus 62 ~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 44779999754 45556667999999999997653 13369999864
No 101
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.66 E-value=0.54 Score=28.56 Aligned_cols=47 Identities=19% Similarity=0.436 Sum_probs=31.5
Q ss_pred ccCccccccccCCCeeeecC--CCCccccHHhHHHHHh---------CCCCCCCcCccCc
Q 042258 97 TDCAICLDDFIEGETCKSFP--ECNHIFHLHCIDQWLK---------HRLNCPVCRNPLC 145 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~---------~~~~CP~CR~~l~ 145 (152)
..| ||-.....+ ..+... .|...||..|+.---. ....||.|+..-.
T Consensus 17 ~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 17 VRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred EEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 568 798774443 455555 6999999999864211 2556999976543
No 102
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=82.55 E-value=0.61 Score=29.65 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=31.1
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhC---CCCCCCcCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH---RLNCPVCRNP 143 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~CR~~ 143 (152)
..| ||-..... ..++....|.-.||..|+..=+.. .-.||.|+..
T Consensus 29 vrC-iC~~~~~~-~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDD-GYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCS-SCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCC-CcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 457 78766544 345666679999999998763322 3469999753
No 103
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=82.28 E-value=0.28 Score=35.07 Aligned_cols=43 Identities=26% Similarity=0.581 Sum_probs=30.2
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhC----CCCCCCcCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----RLNCPVCRNP 143 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~~ 143 (152)
..|.+|.+. ..+.....|...||..|+.+=+.. .-.||.|+..
T Consensus 3 ~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC----SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC----CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 569999754 234445568999999999764443 2359999865
No 104
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=81.95 E-value=0.22 Score=29.59 Aligned_cols=46 Identities=26% Similarity=0.650 Sum_probs=31.1
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHh---CCCCCCCcCc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK---HRLNCPVCRN 142 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~CR~ 142 (152)
....| ||..... ++..+....|...||..|+.---. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 33568 9987654 555666667999999999864221 2456888864
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=81.13 E-value=0.25 Score=30.18 Aligned_cols=44 Identities=32% Similarity=0.722 Sum_probs=29.2
Q ss_pred cCccccccccCCCeeeecCCCCccccHHhHHHHHhC----C-CCCCCcCc
Q 042258 98 DCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----R-LNCPVCRN 142 (152)
Q Consensus 98 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~-~~CP~CR~ 142 (152)
.|.+|...- +++.+.....|...||..|+.+-|.. . =.||.|++
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466665543 33445556669999999999876553 2 36999975
No 106
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=80.60 E-value=0.38 Score=28.71 Aligned_cols=45 Identities=31% Similarity=0.706 Sum_probs=29.7
Q ss_pred cCccccccccCCCeeeecCCCCccccHHhHHHHHhC-----CCCCCCcCcc
Q 042258 98 DCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH-----RLNCPVCRNP 143 (152)
Q Consensus 98 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~CR~~ 143 (152)
.|.+|...- ++..+.....|...||..|+.+=|.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 466776542 23455556679999999999865443 2359999753
No 107
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.81 E-value=0.65 Score=30.00 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=26.3
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHh
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK 132 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~ 132 (152)
.++..|.+|.+.-.. +.+.....|+..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccc
Confidence 345779999776322 22344456999999999987654
No 108
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=79.60 E-value=2.2 Score=25.39 Aligned_cols=46 Identities=26% Similarity=0.627 Sum_probs=30.4
Q ss_pred ccCccccccccCCCeeeecCC--CC-ccccHHhHHHHHhC----CCCCCCcCccCccC
Q 042258 97 TDCAICLDDFIEGETCKSFPE--CN-HIFHLHCIDQWLKH----RLNCPVCRNPLCRN 147 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~CR~~l~~~ 147 (152)
..| ||.... .+ ..+.... |. ..||..|+. |.. .-.||.|+..-.++
T Consensus 17 ~~C-~C~~~~-~g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~k~ 69 (71)
T 1wen_A 17 TYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGPS 69 (71)
T ss_dssp CCS-TTCCCS-CS-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSSSC
T ss_pred CEE-ECCCCC-CC-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccccc
Confidence 567 797753 33 3455555 55 689999997 433 34699998765543
No 109
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=79.39 E-value=2.8 Score=24.92 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=33.6
Q ss_pred CCCccCccccccc-cCCCeeeecCCCCccccHHhHHHHHh--CCCCCCCcCcc
Q 042258 94 TSNTDCAICLDDF-IEGETCKSFPECNHIFHLHCIDQWLK--HRLNCPVCRNP 143 (152)
Q Consensus 94 ~~~~~C~IC~~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~CR~~ 143 (152)
.....|.||.+.- .+++.+.....|.-.||..|+..-.. ..=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4457899998653 23345666677999999999875322 12358888654
No 110
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=77.38 E-value=3.3 Score=27.69 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=33.0
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHH-----h------CCCCCCCcCccCc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWL-----K------HRLNCPVCRNPLC 145 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-----~------~~~~CP~CR~~l~ 145 (152)
.+..|.+|.+. ..+.....|-..||.+|+.+-+ . ..=.|++|+.+-.
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 34679999754 4555566799999999999752 1 1246999976543
No 111
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=76.97 E-value=1.7 Score=26.54 Aligned_cols=34 Identities=26% Similarity=0.536 Sum_probs=23.5
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHH
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQW 130 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 130 (152)
..|.+|...|..-..--..-.||.+||..|....
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 5799999998643221223359999999997643
No 112
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=76.83 E-value=8.7 Score=23.55 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=28.1
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhC
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH 133 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~ 133 (152)
..|.+|.+.+++..-+..-.-=+|.||-.|-...++.
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 6799999999876554332234799999999988864
No 113
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=76.42 E-value=1.1 Score=28.66 Aligned_cols=11 Identities=27% Similarity=1.123 Sum_probs=10.3
Q ss_pred ccHHhHHHHHh
Q 042258 122 FHLHCIDQWLK 132 (152)
Q Consensus 122 fh~~Ci~~wl~ 132 (152)
||++|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 114
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=76.40 E-value=1.1 Score=28.61 Aligned_cols=11 Identities=36% Similarity=1.120 Sum_probs=10.4
Q ss_pred ccHHhHHHHHh
Q 042258 122 FHLHCIDQWLK 132 (152)
Q Consensus 122 fh~~Ci~~wl~ 132 (152)
||++|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 115
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=76.31 E-value=0.52 Score=34.73 Aligned_cols=46 Identities=30% Similarity=0.687 Sum_probs=27.6
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhC-----CCCCCCcCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH-----RLNCPVCRNP 143 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~CR~~ 143 (152)
..|.+|...- ++..+.....|...||..|+.+=|.. .=.||.|+..
T Consensus 175 c~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 4588887642 23445556679999999999965543 2259999753
No 116
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.50 E-value=4.8 Score=23.91 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=31.9
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHH---------hCCCCCCCcCccC
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWL---------KHRLNCPVCRNPL 144 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---------~~~~~CP~CR~~l 144 (152)
..| +|..... +...+....|...||..|+.--. .....||.|+..-
T Consensus 17 ~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 557 8987764 34556666799999999985211 2467899997643
No 117
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.56 E-value=0.25 Score=31.19 Aligned_cols=48 Identities=19% Similarity=0.427 Sum_probs=32.6
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhC----CCCCCCcCcc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH----RLNCPVCRNP 143 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~~ 143 (152)
....|.||...-. ...+.....|...||..|+.+=+.. .=.||.|+..
T Consensus 15 ~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3357999987642 2345566679999999999854433 2349999753
No 118
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=74.49 E-value=1.6 Score=25.25 Aligned_cols=52 Identities=19% Similarity=0.468 Sum_probs=35.2
Q ss_pred CCccCccccccccC-CCeeeecCCCCccccHHhHHHHHh-------CCCCCCCcCccCcc
Q 042258 95 SNTDCAICLDDFIE-GETCKSFPECNHIFHLHCIDQWLK-------HRLNCPVCRNPLCR 146 (152)
Q Consensus 95 ~~~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~-------~~~~CP~CR~~l~~ 146 (152)
++..|.+|...... +..+.....|...||..|+.+-+. ..=.||.|+.....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 44679999876432 345566667999999999886331 23458888765443
No 119
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=73.67 E-value=2.1 Score=29.68 Aligned_cols=47 Identities=21% Similarity=0.510 Sum_probs=33.6
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHH-----hCCCCCCCcCc
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWL-----KHRLNCPVCRN 142 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~CR~ 142 (152)
....| +|......+...+....|...||..|+.--- ...-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 34668 9988765555566677799999999985311 13557999976
No 120
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.41 E-value=2.1 Score=25.35 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=32.8
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHH----hCCCCCCCcCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWL----KHRLNCPVCRNP 143 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl----~~~~~CP~CR~~ 143 (152)
..| ||.....+++..+....|...||..|+.--- .....||.|+..
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 568 6987765665566677799999999976532 124569999754
No 121
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=71.86 E-value=3.2 Score=25.38 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=24.1
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHH
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQW 130 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 130 (152)
...|.+|...|..-..--..-.||++||..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 36799999999643221223349999999996653
No 122
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=71.78 E-value=2.6 Score=27.33 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=23.4
Q ss_pred ccCcccccccc------CCCeeeecCCCCccccHHhHHHH
Q 042258 97 TDCAICLDDFI------EGETCKSFPECNHIFHLHCIDQW 130 (152)
Q Consensus 97 ~~C~IC~~~~~------~~~~~~~l~~C~H~fh~~Ci~~w 130 (152)
..|.+|+..-. +++.++....|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 35889976531 12345555669999999998754
No 123
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.71 E-value=0.89 Score=27.62 Aligned_cols=45 Identities=27% Similarity=0.659 Sum_probs=30.7
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhC-----CCCCCCcCc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKH-----RLNCPVCRN 142 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~CR~ 142 (152)
..|.+|...- ++..+.....|...||..|+.+=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 4688887643 33445556669999999999864443 235998865
No 124
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=71.69 E-value=2.7 Score=33.13 Aligned_cols=45 Identities=24% Similarity=0.483 Sum_probs=29.3
Q ss_pred ccCccccccccCCCeeeecCCCCcc--ccHHhHHHHHh--CCCCCCCcCccC
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHI--FHLHCIDQWLK--HRLNCPVCRNPL 144 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~--fh~~Ci~~wl~--~~~~CP~CR~~l 144 (152)
..|++-...+..+ ++... |.|. |-..-+..... ..-.||+|.+.+
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 6799877766443 44555 9998 66554444332 245699999876
No 125
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.60 E-value=0.39 Score=29.99 Aligned_cols=50 Identities=20% Similarity=0.558 Sum_probs=34.7
Q ss_pred ccCccccccccC-CCeeeecCCCCccccHHhHHHHHh--------CCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIE-GETCKSFPECNHIFHLHCIDQWLK--------HRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~--------~~~~CP~CR~~l~~ 146 (152)
..|.+|...-.. +..+.....|...||..|+.+-+. ..=.|+.|+.....
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 579999876432 245566677999999999987543 13359988765443
No 126
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.14 E-value=4.2 Score=23.78 Aligned_cols=41 Identities=20% Similarity=0.540 Sum_probs=25.8
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
...|.-|.+.+...+.+... -+..||..| ..|-.|+.+|..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 36688888877644433221 466788766 557777777654
No 127
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=70.91 E-value=4.4 Score=26.12 Aligned_cols=45 Identities=24% Similarity=0.581 Sum_probs=29.0
Q ss_pred CCCccCccccccccCCCeeeecC--CCCccccHHhHHHHHhC----CCCCCCcCccC
Q 042258 94 TSNTDCAICLDDFIEGETCKSFP--ECNHIFHLHCIDQWLKH----RLNCPVCRNPL 144 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~----~~~CP~CR~~l 144 (152)
..+..|.+|.+ +..++... .|...||..|+. |.. .-.||.|+-..
T Consensus 13 ~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 34467999973 23445544 588999999997 543 22477665443
No 128
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=70.49 E-value=7.2 Score=23.59 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=28.7
Q ss_pred CCCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 94 TSNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
.....|..|-+.+.. +. ... -+..||.+| ..|-.|+..|..
T Consensus 23 ~~~~~C~~C~~~I~~-~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AV--VKA-RDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCS-CC--EES-SSCEECTTT--------CCCSSSCCCTTT
T ss_pred CcCCCcccCCCEecc-cE--EEE-CCceECccC--------CEecCCCCCCCC
Confidence 344679999888764 32 222 678899877 568888888764
No 129
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=70.08 E-value=3.1 Score=32.68 Aligned_cols=46 Identities=22% Similarity=0.475 Sum_probs=30.2
Q ss_pred ccCccccccccCCCeeeecCCCCcc--ccHHhHHHHHhC--CCCCCCcCccCc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHI--FHLHCIDQWLKH--RLNCPVCRNPLC 145 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~--fh~~Ci~~wl~~--~~~CP~CR~~l~ 145 (152)
..|++=...+..+ ++... |.|. |-..-....... .-.||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 6799877666443 44555 9998 666554443332 456999998874
No 130
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=69.94 E-value=2.6 Score=27.94 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=23.1
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHH
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQ 129 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 129 (152)
..|.+|...|..-..--..-.||++||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 579999999864322122335999999999654
No 131
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=69.35 E-value=3.2 Score=24.61 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=22.5
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHH
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQ 129 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 129 (152)
..|.+|...|..-..--..-.||.+|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999864322122334999999999643
No 132
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=67.92 E-value=1.1 Score=21.81 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=8.8
Q ss_pred CCCCCCcCccCcc
Q 042258 134 RLNCPVCRNPLCR 146 (152)
Q Consensus 134 ~~~CP~CR~~l~~ 146 (152)
+..||+|++.++.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3468888876654
No 133
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=67.80 E-value=1.1 Score=25.70 Aligned_cols=41 Identities=32% Similarity=0.749 Sum_probs=27.2
Q ss_pred ccCccccccccCCCeeeecCC--CC-ccccHHhHHHHHhC----CCCCCCcCc
Q 042258 97 TDCAICLDDFIEGETCKSFPE--CN-HIFHLHCIDQWLKH----RLNCPVCRN 142 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~CR~ 142 (152)
..| +|.... .+ ..+.... |. ..||..|+. +.. +-.||.|++
T Consensus 10 ~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 456 897753 33 4566666 65 699999988 333 345888865
No 134
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.06 E-value=6.8 Score=23.34 Aligned_cols=40 Identities=23% Similarity=0.642 Sum_probs=28.7
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
...|.-|-+.+..++.+.. -+..||.+| ..|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILTG 54 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcCC
Confidence 3679999888866655443 467888877 568888887753
No 135
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=67.05 E-value=3.2 Score=25.74 Aligned_cols=34 Identities=18% Similarity=0.415 Sum_probs=23.7
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHH
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQW 130 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 130 (152)
..|.+|...|..-..--....||++||..|....
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 5799999988643221233459999999996654
No 136
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.95 E-value=4.4 Score=23.71 Aligned_cols=39 Identities=26% Similarity=0.555 Sum_probs=27.5
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
..|..|-+.+..++.+.. -+..||..| ..|..|+.+|..
T Consensus 10 ~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 568889888776655432 567788776 558888877764
No 137
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=66.52 E-value=1.2 Score=28.84 Aligned_cols=23 Identities=22% Similarity=0.713 Sum_probs=15.3
Q ss_pred CCCccccHHhHHHHHhCCCCCCCcCccC
Q 042258 117 ECNHIFHLHCIDQWLKHRLNCPVCRNPL 144 (152)
Q Consensus 117 ~C~H~fh~~Ci~~wl~~~~~CP~CR~~l 144 (152)
+||+.|. .-+.....||.|+..-
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCc
Confidence 4999981 1123467899999853
No 138
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.41 E-value=4.8 Score=23.15 Aligned_cols=40 Identities=20% Similarity=0.614 Sum_probs=21.1
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
..|..|-+.+..++.+... -+..||.+| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 3566776666543322221 345666555 446666665543
No 139
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.78 E-value=4.5 Score=24.67 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=22.2
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHH
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQ 129 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 129 (152)
..|.+|...|..-..--..-.||.+||..|...
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 579999999854221112234999999999554
No 140
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=65.51 E-value=6.5 Score=22.38 Aligned_cols=43 Identities=19% Similarity=0.552 Sum_probs=29.3
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
....|..|...+..++.+.. . -+..||..| ..|-.|..+|...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~-~~~~~H~~C--------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-S-NGELYHEQC--------FVCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-E-TTEEEETTT--------SSCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEE-e-CcCeeCcCC--------CcccCCCCCCCCC
Confidence 34679999888876555432 2 566788877 4688888877653
No 141
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=65.12 E-value=3.5 Score=24.19 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=25.0
Q ss_pred ccCccccccccCCCeeeecCCCCccccH-HhHHHHHhCCCCCCCcCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHL-HCIDQWLKHRLNCPVCRNP 143 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~-~Ci~~wl~~~~~CP~CR~~ 143 (152)
..|..|...+..+.- .. . =+..||. .|..+- ....|-.|...
T Consensus 28 F~C~~C~~~L~~~~~-~~-~-~g~~yC~~~cy~~~--f~~~C~~C~~~ 70 (76)
T 1iml_A 28 LKCEKCGKTLTSGGH-AE-H-EGKPYCNHPCYSAM--FGPKGFGRGGA 70 (76)
T ss_dssp CBCTTTCCBCCTTTE-EE-E-TTEEEETTTHHHHH--SSCCCSSCCCS
T ss_pred CCccccCccCCCCce-EC-c-CCeEeeCHHHHHHH--hCccCCCcCCc
Confidence 678888777765432 11 1 4667777 576553 34557777543
No 142
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=65.07 E-value=0.5 Score=31.37 Aligned_cols=45 Identities=20% Similarity=0.476 Sum_probs=27.3
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcC
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCR 141 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR 141 (152)
..|..|...|..-..--..-.||.+||..|..........|-.|-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 579999998854221122335999999999665544445565553
No 143
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.37 E-value=6.1 Score=22.70 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=6.2
Q ss_pred CccccHHhHHHHH
Q 042258 119 NHIFHLHCIDQWL 131 (152)
Q Consensus 119 ~H~fh~~Ci~~wl 131 (152)
+..||..|..+.+
T Consensus 53 ~~~yC~~cy~~~~ 65 (72)
T 1x61_A 53 RRAYCEGCYVATL 65 (72)
T ss_dssp SCEEEHHHHHHHH
T ss_pred CeEECHHHHHHHH
Confidence 4445555544443
No 144
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.29 E-value=7.1 Score=22.36 Aligned_cols=39 Identities=26% Similarity=0.625 Sum_probs=18.6
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLC 145 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~ 145 (152)
..|..|-+.+..++.+. .. -+..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a-~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKL-EY-GGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCEE-CS-TTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCccCCCccccCccEE-EE-CccccCccc--------CeECCCCCcCC
Confidence 34666666554322221 11 345566554 34555555554
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.05 E-value=3.1 Score=30.05 Aligned_cols=34 Identities=18% Similarity=0.436 Sum_probs=23.6
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHH
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQ 129 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 129 (152)
+..|.+|...|.--..--..-.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999999864322122335999999999654
No 146
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=63.48 E-value=1.4 Score=25.34 Aligned_cols=41 Identities=29% Similarity=0.741 Sum_probs=26.6
Q ss_pred ccCccccccccCCCeeeecCC--CC-ccccHHhHHHHHhC----CCCCCCcCc
Q 042258 97 TDCAICLDDFIEGETCKSFPE--CN-HIFHLHCIDQWLKH----RLNCPVCRN 142 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~CR~ 142 (152)
..| ||.... .+ ..+.... |. ..||..|+. |.. .-.||.|++
T Consensus 11 ~~C-~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcC-CC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 456 897753 33 4555556 44 689999998 433 345888864
No 147
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=63.32 E-value=4.9 Score=24.86 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=21.9
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHH
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQ 129 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 129 (152)
..|.+|...|..-..--..-.||.+||..|...
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 579999998864322122334899999888654
No 148
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.49 E-value=7.4 Score=23.21 Aligned_cols=40 Identities=28% Similarity=0.582 Sum_probs=27.5
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
...|..|-+.+...+.+. . -+..||..| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a-~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--V-NGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--B-TTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCcccCCCcccceEEE--E-CCCeeCCCc--------CEEcCCCCCcCC
Confidence 367999988876555543 2 567888877 557777776654
No 149
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.24 E-value=7.8 Score=22.26 Aligned_cols=39 Identities=28% Similarity=0.567 Sum_probs=20.5
Q ss_pred ccCccccccccC--CCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCc
Q 042258 97 TDCAICLDDFIE--GETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLC 145 (152)
Q Consensus 97 ~~C~IC~~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~ 145 (152)
..|.-|-+.+.. .+.+.. . -+..||.+| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~-a-~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYIS-F-EERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEE-C-SSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEE-E-CCcccCccc--------CEeccCCCcCC
Confidence 456677666543 222221 1 456666655 45666666554
No 150
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.92 E-value=7.8 Score=22.87 Aligned_cols=40 Identities=18% Similarity=0.614 Sum_probs=24.2
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
..|..|-+.+..++.++. . -+..||.+| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE-Y-KGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE-C-SSCEEETTT--------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEE-E-Ccccccccc--------CchhhCCCccCC
Confidence 467777777655444322 2 456777666 457777776654
No 151
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=61.32 E-value=3.9 Score=29.75 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=24.4
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHH
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQW 130 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 130 (152)
+..|.+|...|..-..--....||++||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 36899999998643221233459999999996643
No 152
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=60.63 E-value=2.1 Score=21.78 Aligned_cols=15 Identities=13% Similarity=0.401 Sum_probs=10.4
Q ss_pred CCccCccccccccCC
Q 042258 95 SNTDCAICLDDFIEG 109 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~ 109 (152)
++..||+|+..+...
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 346788888877543
No 153
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=60.04 E-value=4.2 Score=27.31 Aligned_cols=34 Identities=12% Similarity=0.334 Sum_probs=23.5
Q ss_pred CCccCcccccccc--CCCeeeecCCCCccccHHhHHH
Q 042258 95 SNTDCAICLDDFI--EGETCKSFPECNHIFHLHCIDQ 129 (152)
Q Consensus 95 ~~~~C~IC~~~~~--~~~~~~~l~~C~H~fh~~Ci~~ 129 (152)
+...|.+|...|. .+.. .....|.|.+|..|-..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g-~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSAS-VVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCE-EECTTTCCEEETTSEEE
T ss_pred CCccccccCCCcccccCCC-CCCCCCCcccccccCCc
Confidence 3467999999983 2334 33444999999988553
No 154
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=57.41 E-value=7.4 Score=23.09 Aligned_cols=46 Identities=20% Similarity=0.465 Sum_probs=31.7
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHh-----CCCCCCCcCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK-----HRLNCPVCRNP 143 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~CR~~ 143 (152)
..| ||...+..+...+....|.-.||..|+.---. ..-.||.|+..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 345 88777654556666667999999999864321 24569999764
No 155
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.92 E-value=10 Score=22.91 Aligned_cols=39 Identities=26% Similarity=0.641 Sum_probs=20.6
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
..|.-|-+.+...+.+. . -+..||..| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLL--A-NQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp CBCTTTCCBCCTTSEEE--C-SSSEEETTT--------CBCTTTCCBCCT
T ss_pred CcCccCCCccCCceeEE--E-CCCEECCCC--------CeeCCCCCCCCC
Confidence 45777766665444322 2 455666655 345555555543
No 156
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=56.67 E-value=3.5 Score=25.28 Aligned_cols=32 Identities=34% Similarity=0.822 Sum_probs=20.6
Q ss_pred CccccccccC--CCeeeecCCCCccccHHhHHHH
Q 042258 99 CAICLDDFIE--GETCKSFPECNHIFHLHCIDQW 130 (152)
Q Consensus 99 C~IC~~~~~~--~~~~~~l~~C~H~fh~~Ci~~w 130 (152)
||-|-..+.. +...+..+.|++.||..|-.+|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 6666544422 1222456679999999998877
No 157
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=56.09 E-value=2.4 Score=33.52 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=0.0
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHHHh-------CCCCCCCcCccCc
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK-------HRLNCPVCRNPLC 145 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-------~~~~CP~CR~~l~ 145 (152)
...|.+|...|.....--....||++||..|-..... ....|-.|-..+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 3679999998854321122334999999999876642 1355777765543
No 158
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.86 E-value=25 Score=21.07 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=27.0
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
...|..|-+.+. ++.+. . -+..||..| ..|-.|+.+|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCC
Confidence 367999988874 33332 2 578888877 568888887764
No 159
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=55.08 E-value=3.9 Score=20.01 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=18.9
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHh
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHC 126 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 126 (152)
..|+.|-...-..+.+. . -|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--C-LDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--S-SSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--E-CCeEecccC
Confidence 46999988776555433 2 577899887
No 160
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=55.06 E-value=2.7 Score=24.26 Aligned_cols=41 Identities=32% Similarity=0.763 Sum_probs=27.0
Q ss_pred ccCccccccccCCCeeeecCC--CC-ccccHHhHHHHHhC----CCCCCCcCc
Q 042258 97 TDCAICLDDFIEGETCKSFPE--CN-HIFHLHCIDQWLKH----RLNCPVCRN 142 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~CR~ 142 (152)
..| +|.... .+ ..+.... |. ..||..|+. |.. .-.||.|+.
T Consensus 12 ~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 12 TYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp EET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred cEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 456 897752 34 4556666 44 899999987 322 345998865
No 161
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.26 E-value=12 Score=21.80 Aligned_cols=39 Identities=23% Similarity=0.554 Sum_probs=23.1
Q ss_pred ccCccccccccC--CCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCc
Q 042258 97 TDCAICLDDFIE--GETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLC 145 (152)
Q Consensus 97 ~~C~IC~~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~ 145 (152)
..|..|-+.+.. ....+. . -+..||.+| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~-a-~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFIC-F-QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEE-E-TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEE-E-CCcccCccc--------CChhhCCCcCC
Confidence 458888777653 222222 2 566778777 45677766664
No 162
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.59 E-value=20 Score=21.00 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=22.4
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
..|.-|-+.+. ++.+ . .-+..||.+| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~-~~~v--~-a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 16 YICQKCHAIID-EQPL--I-FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CBCTTTCCBCC-SCCC--C-CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCccCCCEec-ceEE--E-ECcceeCCCC--------CEeCCCCCccCC
Confidence 56777777665 2222 1 2556677665 457777766654
No 163
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=51.58 E-value=4.5 Score=24.44 Aligned_cols=14 Identities=21% Similarity=0.717 Sum_probs=13.0
Q ss_pred CCCccccHHhHHHH
Q 042258 117 ECNHIFHLHCIDQW 130 (152)
Q Consensus 117 ~C~H~fh~~Ci~~w 130 (152)
+|++.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999999888
No 164
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=51.51 E-value=5.2 Score=23.70 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=13.0
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHh
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHC 126 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 126 (152)
..|..|-+.+..++.+.. -+..||.+|
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~C 34 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCC 34 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSS
T ss_pred CcCcCcCccccCceeEEe---CCccccccc
Confidence 446666665544443222 344555544
No 165
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.21 E-value=12 Score=22.01 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=25.5
Q ss_pred CccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCc
Q 042258 96 NTDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLC 145 (152)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~ 145 (152)
...|..|-+.+.. +. +.. -+..||..| ..|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~-~~--~~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VF--VKL-RDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-SC--EEC-SSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccC-cE--EEE-CcceeCcCc--------CeeCCCCCCCC
Confidence 3679999887754 32 222 567888877 45778877764
No 166
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=49.82 E-value=8.1 Score=24.97 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=17.2
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHH
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWL 131 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 131 (152)
..|..|...+..++..... =+..||..|..+.+
T Consensus 37 F~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWT 69 (123)
T ss_dssp CBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHH
T ss_pred CccccCCCCCCCCCcEEee--CCEEEcHHHhHHHh
Confidence 5566666666444332221 35566666665554
No 167
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.26 E-value=13 Score=21.06 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=5.5
Q ss_pred ccCcccccccc
Q 042258 97 TDCAICLDDFI 107 (152)
Q Consensus 97 ~~C~IC~~~~~ 107 (152)
..|..|-+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (70)
T 2d8x_A 6 SGCHQCGEFII 16 (70)
T ss_dssp SBCSSSCCBCC
T ss_pred CcCccCCCEec
Confidence 34555555543
No 168
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=47.75 E-value=15 Score=23.84 Aligned_cols=38 Identities=24% Similarity=0.538 Sum_probs=28.3
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLC 145 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~ 145 (152)
..|.-|-+.+.....+.. -+..||..| ..|-.|+.+|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 679999988765433332 577899887 67899998885
No 169
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.51 E-value=19 Score=20.37 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=5.1
Q ss_pred cCcccccccc
Q 042258 98 DCAICLDDFI 107 (152)
Q Consensus 98 ~C~IC~~~~~ 107 (152)
.|..|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (70)
T 2d8z_A 7 GCVQCKKPIT 16 (70)
T ss_dssp BCSSSCCBCC
T ss_pred CCcccCCeec
Confidence 4555555543
No 170
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=44.78 E-value=11 Score=25.79 Aligned_cols=32 Identities=25% Similarity=0.572 Sum_probs=23.0
Q ss_pred CCccCcccccccc--CCCeeeecCCCCccccHHhH
Q 042258 95 SNTDCAICLDDFI--EGETCKSFPECNHIFHLHCI 127 (152)
Q Consensus 95 ~~~~C~IC~~~~~--~~~~~~~l~~C~H~fh~~Ci 127 (152)
+...|.+|...|. .+....-. .|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCC-CCCchhhcccc
Confidence 3478999999863 33343434 49999999996
No 171
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=44.44 E-value=23 Score=21.61 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=29.1
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
..|..|...+... .... .=+..||..|..+ .....|..|..++..
T Consensus 34 F~C~~C~~~L~~~-~~~~--~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 34 FRCAKCLHPLANE-TFVA--KDNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp CCCSSSCCCTTSS-CCEE--ETTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred CcccccCCCCCcC-eeEC--cCCEEEChhHhhh--hcCCccccCCCcccc
Confidence 6688887777432 2111 1467788888643 235679999998873
No 172
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=44.00 E-value=28 Score=24.01 Aligned_cols=43 Identities=26% Similarity=0.650 Sum_probs=30.2
Q ss_pred ccCccccccccCCCeeeecC--CCCccccHHhHHHHHhC----------CCCCCCcCcc
Q 042258 97 TDCAICLDDFIEGETCKSFP--ECNHIFHLHCIDQWLKH----------RLNCPVCRNP 143 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~----------~~~CP~CR~~ 143 (152)
..|.+|-+ |..+.... .|...||.+||...+.. .=.|=+|.-.
T Consensus 80 ~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 80 SYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred ceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 66888864 34555554 69999999999998754 2348777654
No 173
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=43.73 E-value=5.2 Score=23.66 Aligned_cols=18 Identities=39% Similarity=0.805 Sum_probs=12.8
Q ss_pred HHHhCCCCCCCcCccCcc
Q 042258 129 QWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 129 ~wl~~~~~CP~CR~~l~~ 146 (152)
+||...-.||.|+.+|..
T Consensus 3 ~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKL 20 (69)
T ss_dssp CCGGGTCCCTTTCCCCEE
T ss_pred hHHHhheeCCCCCCcCeE
Confidence 345556779999988753
No 174
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=43.70 E-value=14 Score=20.63 Aligned_cols=38 Identities=18% Similarity=0.489 Sum_probs=23.0
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
..|+.|-+.+. ++. +.. -+..||..| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~-~~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRV--VNA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCE--ECC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ceE--EEE-CccccccCc--------CEECCCCCCCCC
Confidence 45777777765 332 222 566777766 457777776654
No 175
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.18 E-value=26 Score=22.37 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=33.7
Q ss_pred ccCccccccccC-CCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIE-GETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
..|..|...+.+ +.... . .=+..||..|..+-+..+..|-.|..+|..
T Consensus 33 F~C~~C~~~L~~~~~~~~-~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-E-ETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEE-E-ECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 578888877752 22211 1 256789999988877666689999988875
No 176
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.10 E-value=15 Score=20.81 Aligned_cols=10 Identities=20% Similarity=0.693 Sum_probs=5.2
Q ss_pred ccCccccccc
Q 042258 97 TDCAICLDDF 106 (152)
Q Consensus 97 ~~C~IC~~~~ 106 (152)
..|.-|-+.+
T Consensus 6 ~~C~~C~~~I 15 (69)
T 2cur_A 6 SGCVKCNKAI 15 (69)
T ss_dssp CCCSSSCCCC
T ss_pred CCCcccCCEe
Confidence 3455555554
No 177
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=42.57 E-value=18 Score=20.85 Aligned_cols=41 Identities=22% Similarity=0.513 Sum_probs=26.7
Q ss_pred ccCccccccccC---CCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCccC
Q 042258 97 TDCAICLDDFIE---GETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCRN 147 (152)
Q Consensus 97 ~~C~IC~~~~~~---~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~~ 147 (152)
..|+-|-+.+.. .+.... . -+..||..| ..|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVA-Y-EGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEE-E-TTEEEETTT--------CBCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEE-E-CcceeCccc--------CEehhcCCCCCCC
Confidence 568888888764 222222 2 467888877 5688888887643
No 178
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.53 E-value=28 Score=20.04 Aligned_cols=9 Identities=22% Similarity=0.626 Sum_probs=4.1
Q ss_pred cCccccccc
Q 042258 98 DCAICLDDF 106 (152)
Q Consensus 98 ~C~IC~~~~ 106 (152)
.|+-|-..+
T Consensus 7 ~C~~C~~~I 15 (73)
T 1wig_A 7 GCDSCEKYI 15 (73)
T ss_dssp SCSSSCCCC
T ss_pred CcccCCCEe
Confidence 344444443
No 179
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=42.34 E-value=4.6 Score=23.80 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=13.3
Q ss_pred HHHhCCCCCCCcCccCcc
Q 042258 129 QWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 129 ~wl~~~~~CP~CR~~l~~ 146 (152)
+||...-.||+|+.+|..
T Consensus 5 ~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp GGGTCCCBCTTTCCBCEE
T ss_pred HHHHHHhCCCCCCCcCeE
Confidence 456667789999987754
No 180
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.20 E-value=22 Score=20.81 Aligned_cols=38 Identities=32% Similarity=0.665 Sum_probs=23.7
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
..|+.|-+.+. ++.+. . -+..||.+| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~-~~~v~--a-~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--A-LGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--E-TTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE--E-CCceeCccC--------CccccCCCCCCC
Confidence 46888877765 33222 2 567788766 457777777653
No 181
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.42 E-value=16 Score=21.44 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=23.0
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
..|..|-..+..++.+. ..-+..||..| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~--~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSREL--FYEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBC--CCSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEE--EeCCccccccC--------CeecCCCCccCC
Confidence 46888877765322222 11456777766 456777766653
No 182
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=38.77 E-value=46 Score=26.33 Aligned_cols=44 Identities=23% Similarity=0.586 Sum_probs=30.3
Q ss_pred ccCccccccccCCCeeeecC--CCCccccHHhHHHHHhC----------CCCCCCcCccC
Q 042258 97 TDCAICLDDFIEGETCKSFP--ECNHIFHLHCIDQWLKH----------RLNCPVCRNPL 144 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~----------~~~CP~CR~~l 144 (152)
..|.+|-+. ..+.... .|...||..||...+.. .=.|=+|...-
T Consensus 94 ~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 94 SYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp CSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred ccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 567777543 3444444 69999999999999843 33588887543
No 183
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=37.87 E-value=12 Score=21.12 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=15.7
Q ss_pred ccCccccccccCCCeeeecC--CCCccc
Q 042258 97 TDCAICLDDFIEGETCKSFP--ECNHIF 122 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~--~C~H~f 122 (152)
..|+.|...+...+.....+ .|++.|
T Consensus 11 L~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 57999998875433222333 477665
No 184
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.71 E-value=9.5 Score=24.20 Aligned_cols=40 Identities=23% Similarity=0.522 Sum_probs=22.2
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLC 145 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~ 145 (152)
..||.|..++.... ++.+|..|-.. +.....||-|..+|-
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHH
Confidence 57999988774321 22223333221 234566888888764
No 185
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=35.90 E-value=13 Score=20.22 Aligned_cols=41 Identities=27% Similarity=0.657 Sum_probs=26.9
Q ss_pred cccccccCCCeeeecCCCCccccHHhHHHHHh---CCCCCCCcCc
Q 042258 101 ICLDDFIEGETCKSFPECNHIFHLHCIDQWLK---HRLNCPVCRN 142 (152)
Q Consensus 101 IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~CR~ 142 (152)
||..... +...+....|+..||..|+.---. ..-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5765543 445566667999999999864221 3456888864
No 186
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=35.60 E-value=9.5 Score=17.98 Aligned_cols=10 Identities=40% Similarity=1.138 Sum_probs=5.7
Q ss_pred CCCCcCccCc
Q 042258 136 NCPVCRNPLC 145 (152)
Q Consensus 136 ~CP~CR~~l~ 145 (152)
.||+|..-++
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 4666665444
No 187
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=35.41 E-value=26 Score=28.58 Aligned_cols=46 Identities=20% Similarity=0.443 Sum_probs=32.0
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHh-----CCCCCCCcCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK-----HRLNCPVCRNP 143 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~CR~~ 143 (152)
..| +|...+..+...+....|...||..|+.---. ..-.||.|+..
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 456 89887654556667777999999999854221 13569999753
No 188
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.53 E-value=25 Score=20.41 Aligned_cols=37 Identities=27% Similarity=0.628 Sum_probs=17.5
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLC 145 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~ 145 (152)
..|..|-+.+.. +. +.. -+..||.+| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~-~~--v~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ-GG--VTY-RDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS-CC--EES-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecC-cE--EEE-CCchhhhhh--------CCcccCCCcCC
Confidence 346666555433 21 112 445556544 34555555553
No 189
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=33.92 E-value=23 Score=19.76 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=22.6
Q ss_pred cCccccccccCCCeeeecCCCCcccc--HHhHHHHHhCCCCCCCcCccCcc
Q 042258 98 DCAICLDDFIEGETCKSFPECNHIFH--LHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 98 ~C~IC~~~~~~~~~~~~l~~C~H~fh--~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
.|.-|-+.+..++.... . -+..|| .+| ..|-.|+.+|..
T Consensus 4 ~C~~C~~~I~~~~~~v~-a-~~~~wH~~~~C--------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVT-Y-NNFSWHASTEC--------FLCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEE-E-TTEEEETTTTT--------SBCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEE-E-CCCccCCCCCC--------EECCCCCCcCCC
Confidence 57777777654322222 1 466777 666 457777776643
No 190
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.08 E-value=32 Score=21.64 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=19.2
Q ss_pred ccCccccccccC-CCeeeecCCCCccccHHhHHHHHhCC
Q 042258 97 TDCAICLDDFIE-GETCKSFPECNHIFHLHCIDQWLKHR 134 (152)
Q Consensus 97 ~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~ 134 (152)
..|..|...+.+ +... ...=+..||..|..+-+..+
T Consensus 31 F~C~~C~~~L~~~g~~~--~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRL--YYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp CCCSSSCSCCCCSSSCC--CCBTTBCCCHHHHHHHHTSC
T ss_pred CcccccCCchhcCCCee--EEECCeeechHHHHHHhCcc
Confidence 567777666643 2121 11245667777766654443
No 191
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.23 E-value=36 Score=20.44 Aligned_cols=34 Identities=24% Similarity=0.533 Sum_probs=21.9
Q ss_pred CCCccCccccccccC-CCeeeecCCCCccccHHhH
Q 042258 94 TSNTDCAICLDDFIE-GETCKSFPECNHIFHLHCI 127 (152)
Q Consensus 94 ~~~~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci 127 (152)
.....|+.|.+.|-- ...-...+.|.|..|.+|-
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 445789999998832 1111234458998888873
No 192
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.81 E-value=26 Score=20.48 Aligned_cols=37 Identities=24% Similarity=0.689 Sum_probs=19.2
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLC 145 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~ 145 (152)
..|+.|-..+.. +.+. . -+..||..| ..|..|+.+|.
T Consensus 16 ~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILD-RILR--A-MGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCS-CCEE--E-TTEEECTTT--------CBCSSSCCBCT
T ss_pred CccccCCCeecc-eeEE--E-CCccccHHh--------cCcccCCCccC
Confidence 456666666542 2211 1 455666655 44666666554
No 193
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=31.74 E-value=43 Score=19.18 Aligned_cols=36 Identities=22% Similarity=0.540 Sum_probs=28.0
Q ss_pred CCccCccccccccCCCeeeecCCCCccccHH-hHHHH
Q 042258 95 SNTDCAICLDDFIEGETCKSFPECNHIFHLH-CIDQW 130 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~-Ci~~w 130 (152)
....|.-|...+..++....-....|.||.. ||...
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 3467999999999888766655688999864 88775
No 194
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=30.86 E-value=21 Score=21.74 Aligned_cols=9 Identities=22% Similarity=0.984 Sum_probs=4.4
Q ss_pred cCccccccc
Q 042258 98 DCAICLDDF 106 (152)
Q Consensus 98 ~C~IC~~~~ 106 (152)
.|+.|..++
T Consensus 4 ~CP~C~~~l 12 (81)
T 2jrp_A 4 TCPVCHHAL 12 (81)
T ss_dssp CCSSSCSCC
T ss_pred CCCCCCCcc
Confidence 355555444
No 195
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=30.76 E-value=35 Score=21.80 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=21.8
Q ss_pred ccCccccccccC-CCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCc
Q 042258 97 TDCAICLDDFIE-GETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLC 145 (152)
Q Consensus 97 ~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~ 145 (152)
..|..|...+.. +..... .=|..||..|..+-+.....|..|..++.
T Consensus 30 F~C~~C~~~L~~~~~~~~~--~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYY--KLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEE--ETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred cccCcCCCccccCCCeEEE--ECCEEeecCchhhhCCCccChhhcCCccC
Confidence 455556555532 112111 13455666665554333335666655554
No 196
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=30.71 E-value=43 Score=19.54 Aligned_cols=29 Identities=24% Similarity=0.631 Sum_probs=21.9
Q ss_pred ccCccccccccCCCeeeecCCC-CccccHHhHHHH
Q 042258 97 TDCAICLDDFIEGETCKSFPEC-NHIFHLHCIDQW 130 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C-~H~fh~~Ci~~w 130 (152)
.-|.||.+. ..++-+. | +-.||..|-..-
T Consensus 9 pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 9 PWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp SSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 569999876 4566666 9 789999996553
No 197
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=30.26 E-value=47 Score=21.06 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=32.6
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
..|..|...+... .... .=|..||..|..+- ....|..|..++..
T Consensus 31 F~C~~C~~~L~~~-~f~~--~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGE-IYVM--VNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTS-EEEE--ETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcC-EEEe--ECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 7888888887542 3222 25778999997664 46789999999885
No 198
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.78 E-value=29 Score=20.09 Aligned_cols=38 Identities=18% Similarity=0.544 Sum_probs=20.3
Q ss_pred ccCccccccccCCCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 97 TDCAICLDDFIEGETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
..|..|-+.+.. +.+.. -+..||..| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCCC
Confidence 356666666543 22221 445666655 446666666643
No 199
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.84 E-value=19 Score=21.14 Aligned_cols=16 Identities=38% Similarity=0.908 Sum_probs=10.9
Q ss_pred HhCCCCCCCcCccCcc
Q 042258 131 LKHRLNCPVCRNPLCR 146 (152)
Q Consensus 131 l~~~~~CP~CR~~l~~ 146 (152)
|...-.||.|+.+|..
T Consensus 5 LL~iL~CP~ck~~L~~ 20 (68)
T 2hf1_A 5 FLEILVCPLCKGPLVF 20 (68)
T ss_dssp CEEECBCTTTCCBCEE
T ss_pred HhhheECCCCCCcCeE
Confidence 3344579999987754
No 200
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=27.83 E-value=30 Score=23.91 Aligned_cols=9 Identities=56% Similarity=1.335 Sum_probs=6.3
Q ss_pred CCCCCcCcc
Q 042258 135 LNCPVCRNP 143 (152)
Q Consensus 135 ~~CP~CR~~ 143 (152)
..||+|..+
T Consensus 154 ~~CP~Cg~~ 162 (170)
T 3pwf_A 154 EYCPVCGAP 162 (170)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 478888754
No 201
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=27.37 E-value=43 Score=23.15 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=5.2
Q ss_pred CccccHHhHHH
Q 042258 119 NHIFHLHCIDQ 129 (152)
Q Consensus 119 ~H~fh~~Ci~~ 129 (152)
+..||..|..+
T Consensus 54 g~~yC~~cy~~ 64 (192)
T 1b8t_A 54 DEIYCKSCYGK 64 (192)
T ss_dssp TEEEEHHHHHH
T ss_pred CEeeChhhhHh
Confidence 34455555444
No 202
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=25.84 E-value=19 Score=21.14 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=11.4
Q ss_pred HHhCCCCCCCcCccCcc
Q 042258 130 WLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 130 wl~~~~~CP~CR~~l~~ 146 (152)
||...-.||.|+.+|..
T Consensus 4 ~LL~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEY 20 (68)
T ss_dssp SSSCCCBCSSSCCBCEE
T ss_pred HHhhheECCCCCCcCeE
Confidence 34445679999887653
No 203
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=25.45 E-value=30 Score=19.89 Aligned_cols=44 Identities=23% Similarity=0.521 Sum_probs=27.2
Q ss_pred ccCccccccccCCCeeeecC--CCCccccHHhHHHHH---h-----CCCCCCCcCc
Q 042258 97 TDCAICLDDFIEGETCKSFP--ECNHIFHLHCIDQWL---K-----HRLNCPVCRN 142 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl---~-----~~~~CP~CR~ 142 (152)
..| ||-.....+. .+... .|...||..|+.--- . .+..||.||.
T Consensus 11 v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 457 7866654443 44443 499999999974210 0 1356999974
No 204
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=25.27 E-value=34 Score=20.88 Aligned_cols=33 Identities=21% Similarity=0.550 Sum_probs=20.9
Q ss_pred ccCccccccccCCCeee-ecCCCCccccHHhHHHH
Q 042258 97 TDCAICLDDFIEGETCK-SFPECNHIFHLHCIDQW 130 (152)
Q Consensus 97 ~~C~IC~~~~~~~~~~~-~l~~C~H~fh~~Ci~~w 130 (152)
..|.||... ..|.-+. ..+.|.-.||..|..+-
T Consensus 18 l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 18 LTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred CCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHHC
Confidence 679999643 1222211 12348999999998763
No 205
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=24.82 E-value=66 Score=21.95 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=16.4
Q ss_pred CccccHHhHHHHHhCCCCCCCcCccCcc
Q 042258 119 NHIFHLHCIDQWLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 119 ~H~fh~~Ci~~wl~~~~~CP~CR~~l~~ 146 (152)
|..||..|..+- ....|..|...+..
T Consensus 106 g~~yC~~~y~~~--f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 106 ESVYCKDDFFKR--FGTKCAACQLGIPP 131 (182)
T ss_dssp TEEECHHHHHHT--TSCCCTTTCCCCCS
T ss_pred CEeeecCccccc--cccccccCCCccCC
Confidence 455666665442 34678888877764
No 206
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.74 E-value=4.5 Score=31.07 Aligned_cols=48 Identities=23% Similarity=0.448 Sum_probs=29.3
Q ss_pred CCccCccccccccCCCeeee-cCCCC--ccccHHhHHHHHhCCCCCCCcCcc
Q 042258 95 SNTDCAICLDDFIEGETCKS-FPECN--HIFHLHCIDQWLKHRLNCPVCRNP 143 (152)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~-l~~C~--H~fh~~Ci~~wl~~~~~CP~CR~~ 143 (152)
....|++|-..-..+ .+.. -..=| +..|.-|-..|-..+..||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 346799997654322 1110 00122 566777777887778899999764
No 207
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=24.27 E-value=47 Score=22.92 Aligned_cols=47 Identities=13% Similarity=0.295 Sum_probs=22.9
Q ss_pred ccCccccccccC-CCeeeecCCCCccccHHhHHHHHhCCCCCCCcCccCc
Q 042258 97 TDCAICLDDFIE-GETCKSFPECNHIFHLHCIDQWLKHRLNCPVCRNPLC 145 (152)
Q Consensus 97 ~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~l~ 145 (152)
..|..|...+.. +...... =+..||..|..+-+..+..|..|...+.
T Consensus 33 F~C~~C~~~L~~~g~~~~~~--~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTK--SGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEE--TTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cccCCCCcccccCCceEEEe--CCccccccccccccccCCccccCCCccc
Confidence 456666555543 2222211 3455666665554333234666666554
No 208
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=23.78 E-value=30 Score=23.13 Aligned_cols=27 Identities=22% Similarity=0.562 Sum_probs=17.8
Q ss_pred ccCccccccccCC-CeeeecCCCCcccc
Q 042258 97 TDCAICLDDFIEG-ETCKSFPECNHIFH 123 (152)
Q Consensus 97 ~~C~IC~~~~~~~-~~~~~l~~C~H~fh 123 (152)
..||-|-.+|--. ....+.|.|+|-+-
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHEWS 55 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEEEC
T ss_pred CCCCCCCCcceEecCCeEECCccccccC
Confidence 5699998887422 23455677888763
No 209
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=23.76 E-value=46 Score=26.80 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=31.2
Q ss_pred CccccccccCCCeeeecCCCCccccHHhHHHHHh-----CCCCCCCcCcc
Q 042258 99 CAICLDDFIEGETCKSFPECNHIFHLHCIDQWLK-----HRLNCPVCRNP 143 (152)
Q Consensus 99 C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~CR~~ 143 (152)
..+|...+..+...+....|...||..|+.---. ..-.||.|+..
T Consensus 7 yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred EEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 4488777654556666777999999999852111 24579999764
No 210
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.65 E-value=26 Score=24.59 Aligned_cols=9 Identities=44% Similarity=1.224 Sum_probs=6.8
Q ss_pred CCCCCcCcc
Q 042258 135 LNCPVCRNP 143 (152)
Q Consensus 135 ~~CP~CR~~ 143 (152)
..||+|..+
T Consensus 172 ~~CP~C~~~ 180 (191)
T 1lko_A 172 ELCPACAHP 180 (191)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCcCC
Confidence 379999774
No 211
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=22.07 E-value=19 Score=21.21 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=11.0
Q ss_pred HHhCCCCCCCcCccCcc
Q 042258 130 WLKHRLNCPVCRNPLCR 146 (152)
Q Consensus 130 wl~~~~~CP~CR~~l~~ 146 (152)
||...-.||.|+.+|..
T Consensus 4 ~LL~iL~CP~ck~~L~~ 20 (70)
T 2js4_A 4 RLLDILVCPVCKGRLEF 20 (70)
T ss_dssp CCCCCCBCTTTCCBEEE
T ss_pred HHhhheECCCCCCcCEE
Confidence 34445568888887653
No 212
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.19 E-value=24 Score=22.23 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=6.0
Q ss_pred CCCCCcCccCc
Q 042258 135 LNCPVCRNPLC 145 (152)
Q Consensus 135 ~~CP~CR~~l~ 145 (152)
..||+|-+++.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 34666655543
No 213
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=20.73 E-value=50 Score=23.40 Aligned_cols=9 Identities=44% Similarity=1.346 Sum_probs=6.7
Q ss_pred CCCCCcCcc
Q 042258 135 LNCPVCRNP 143 (152)
Q Consensus 135 ~~CP~CR~~ 143 (152)
..||+|..+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 579999764
Done!