BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042259
(745 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 268/648 (41%), Positives = 361/648 (55%), Gaps = 56/648 (8%)
Query: 120 TTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCEL 179
TT S +FLG + S + +++GVLD GI P PSF DEG PPP KWKG CE
Sbjct: 1 TTRSWDFLGFPLTVP--RRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 180 EGA-NCNNKIIGARNFLNKSEP--------PIDNDGHGTHTASTAAGNFVNGANLFGQAN 230
CN KIIGAR++ + P P D +GHGTHTASTAAG V+ ANL+G
Sbjct: 59 SNNFRCNRKIIGARSY-HIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGL 117
Query: 231 GTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPXXXXXX 290
GTA G PLA +A YKVC D GC ++ + AA D A+ +GVD++S+S+G +
Sbjct: 118 GTARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDA 176
Query: 291 XXXXXXXS-QKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETY 349
+ ++GIL S SAGN GPN T A+ +PW+L+V AST+DR V Q+GN +++
Sbjct: 177 IAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSF 236
Query: 350 DGETIFQPKDFPSKQLPLVY------PGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGT 403
G +I F ++ PLV G S++ FC +++ +KGK+V+C+ G
Sbjct: 237 QGVSI---NTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGP 293
Query: 404 QRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPT 463
K D GAA +LM DY AD++ LP+ + YI S SP
Sbjct: 294 HEFFKSLD-----GAAGVLMTSNTRDY---ADSYPLPSSVLDPNDLLATLRYIYSIRSPG 345
Query: 464 ASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWP-FSEENITNT 522
A+I FK T I SAP V FSSRGPN A+ ++KPDI GPGV ILAAWP +
Sbjct: 346 ATI-FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRR 404
Query: 523 KSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLL 582
+ F +ISGTSMSCPH++GIA +K+ +P WSPAAIKSA+MTTA MN
Sbjct: 405 NTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASP--------MNARFN 456
Query: 583 PADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIEGIVDHDVQCSKVSS 642
P FA G+GHVNP KA PGLVY+ + DYV++LCG+ Y Q + I C+ ++
Sbjct: 457 PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNT 516
Query: 643 IAEAELNYPSFSVKLGSSP---QTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISF 699
+LNYPSF + + S Q +NRT+T+V S Y I P+G+ I V P+ +SF
Sbjct: 517 GRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSF 576
Query: 700 TEKNQKATFSVTFIRDQNSNASSVQGY-----LSWVSATHTVRSPIAI 742
+ +F++T +R S++G+ L W H VRSPI I
Sbjct: 577 NGLGDRKSFTLT-VR------GSIKGFVVSASLVWSDGVHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 260/663 (39%), Positives = 366/663 (55%), Gaps = 65/663 (9%)
Query: 120 TTHSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKC-- 177
TTH+ +FL L+ +SG W S LG+ VI+ VLD GI P SF D+GMP P +WKG C
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 178 --ELEGANCNNKIIGARNFLNK----SEPPI--------DNDGHGTHTASTAAGNFVNGA 223
+ + CN K+IGA N+ NK ++P + D DGHGTH AS AGNF G
Sbjct: 61 GTQFNASMCNRKLIGA-NYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGV 119
Query: 224 NLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSL 283
+ FG A GTA G+AP A LA+YK + G S + AA+D AV +GVD++SIS G +
Sbjct: 120 SHFGYAPGTARGVAPRARLAVYKFSFNE-GTFTSDLIAAMDQAVADGVDMISISYGYRFI 178
Query: 284 PXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQL 343
P KG+LVS SAGN GP +L N +PW+L V + DR+ L
Sbjct: 179 PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238
Query: 344 GNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSI--DVKGKVVLCQRGG 401
GN G ++F + F + P++Y N + + C E L S + + +V+C G
Sbjct: 239 GNGLKIRGWSLFPARAF-VRDSPVIY----NKTLSDCSSEELLSQVENPENTIVICDDNG 293
Query: 402 ---GTQRIRKGKDVKDAGGAAMILMNDE-LFDYGTVADNHVLPAVYVSYAAGERIKAYIN 457
RI +K AA+ + D +F T + P V V+ G+++ Y+
Sbjct: 294 DFSDQMRIITRARLK----AAIFISEDPGVFRSATFPN----PGVVVNKKEGKQVINYVK 345
Query: 458 STSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWP---F 514
++ +PTA+I F+ T + K AP VA S+RGP+ + GI KPDI+ PGV ILAA+P F
Sbjct: 346 NSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVF 405
Query: 515 SEENITNT--KSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLE 572
+ TN + + + SGTSM+ PH +GIAA+LK+AHP+WSP+AI+SA+MTTAD ++
Sbjct: 406 ATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNT 465
Query: 573 GKPIM----NHHLLPADLFAVGAGHVNPSKANDPGLVYEISHDDYVRYLCGKNYTDQQIE 628
KPI N P D+ GAGHV+P++A DPGLVY+ + DYV LC N+T++Q +
Sbjct: 466 RKPIKDSDNNKAATPLDM---GAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFK 522
Query: 629 GIVDHDV--QCSKVSSIAEAELNYPSFSVKLGS-------SPQTYNRTVTNVGQDNSFYT 679
I CS S A+LNYPSF + L S Q + RTVTNVG+ + Y
Sbjct: 523 TIARSSASHNCSNPS----ADLNYPSF-IALYSIEGNFTLLEQKFKRTVTNVGKGAATYK 577
Query: 680 HHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWV--SATHTVR 737
+ P+ I V P + F KN+K ++++T + S G ++WV + H+VR
Sbjct: 578 AKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVR 637
Query: 738 SPI 740
SPI
Sbjct: 638 SPI 640
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 109/462 (23%), Positives = 199/462 (43%), Gaps = 66/462 (14%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGAN----------CNNKIIGA 191
G G ++ V+D G H ++ A+++ K +LE A N+K+
Sbjct: 25 GAGTVVAVIDAGFDKNHEAW--RLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYY 82
Query: 192 RNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETD 251
++ + +D + HGTH + +GN A + G P A L + +V E
Sbjct: 83 HDYSKDGKTAVDQE-HGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRV-EIV 136
Query: 252 LGCPESIVN--AAIDAAVEEGVDVLSISLGSPSLPXXX--XXXXXXXXXXSQKGILVSCS 307
G + N AI AV G V+++S G+ +L KG+ + S
Sbjct: 137 NGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTS 196
Query: 308 AGNS----GPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSK 363
AGN G LA+ + + + D ++ + +++ + T+ + D +K
Sbjct: 197 AGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATV-KTDDHQAK 255
Query: 364 QLPLVYPGVKNSSAAFCLPETLKSI------DVKGKVVLCQRGGGTQRIRKGKDVKDAGG 417
++P++ + A+ + + DVKGK+ L +RG + K + K AG
Sbjct: 256 EMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFK-DKIANAKKAGA 314
Query: 418 AAMILMNDELFDYG---TVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGT--V 472
+++ +++ D G + + +PA ++S G +K + +I F T V
Sbjct: 315 VGVLIYDNQ--DKGFPIELPNVDQMPAAFISRKDGLLLK------DNSKKTITFNATPKV 366
Query: 473 IGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGT 532
+ S +++ FSS G + G +KPDI PG IL++ + N K + +SGT
Sbjct: 367 LPTASDTKLSRFSSWG--LTADGNIKPDIAAPGQDILSS-------VANNK--YAKLSGT 415
Query: 533 SMSCPHLSGIAALLK----SAHPDWSPAA----IKSAIMTTA 566
SMS P ++GI LL+ + +PD +P+ K +M++A
Sbjct: 416 SMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSA 457
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 66/116 (56%), Gaps = 12/116 (10%)
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FSSRGP + LKP+++ PG I+AA +T GT+M+ PH++GIA
Sbjct: 312 FSSRGPTADNR--LKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVAGIA 369
Query: 544 ALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599
ALL AHP W+P +K+A++ TADIV KP AD+ A GAG VN KA
Sbjct: 370 ALLLQAHPSWTPDKVKTALIETADIV----KPDE-----IADI-AYGAGRVNAYKA 415
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 77/155 (49%), Gaps = 15/155 (9%)
Query: 183 NCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHL 242
+ K+IG +F+N P D++GHGTH AS AAG GA +NG GMAP A L
Sbjct: 156 DLQGKVIGWVDFVNGKTTPYDDNGHGTHVASIAAGT---GA----ASNGKYKGMAPGAKL 208
Query: 243 AIYKVCETD-LGCPESIVNAAIDAAVEE----GVDVLSISLGSPSLPXXXXXXXXXXXXX 297
KV G I+N +D AV+ G+ V+++SLGS
Sbjct: 209 VGIKVLNGQGSGSISDIING-VDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNA 267
Query: 298 SQKGILVSCSAGNSGPNSSTLAN--EAPWMLTVGA 330
G++V +AGNSGPN T+ + A ++TVGA
Sbjct: 268 WDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 108/452 (23%), Positives = 179/452 (39%), Gaps = 70/452 (15%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGAN----------CNNKIIGA 191
G G ++ V+D G H ++ A+++ K +LE A N+K+
Sbjct: 16 GAGTVVAVIDAGFDKNHEAW--RLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYY 73
Query: 192 RNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETD 251
++ + +D + HGTH + +GN A + G P A L + +V E
Sbjct: 74 HDYSKDGKTAVDQE-HGTHVSGILSGN----APSETKEPYRLEGAXPEAQLLLXRV-EIV 127
Query: 252 LGCPESIVN--AAIDAAVEEGVDVLSISLGSPSLPXXX--XXXXXXXXXXSQKGILVSCS 307
G + N AI A+ G V++ S G+ +L KG+ + S
Sbjct: 128 NGLADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLPDETKKAFDYAKSKGVSIVTS 187
Query: 308 AGNS----GPNSSTLANEAPW-----------MLTVGASTIDRSIVALTQLGNQETYDGE 352
AGN G LA+ + LTV + + D+ + ++ + D E
Sbjct: 188 AGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKE 247
Query: 353 T-IFQPKDF-PSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGK 410
+ F P+K Y F DVKGK+ L +RG + + K
Sbjct: 248 XPVLSTNRFEPNKAYDYAYANRGTKEDDFK--------DVKGKIALIERGDIDFKDKIAK 299
Query: 411 DVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKG 470
K +I N + + + PA ++S G +K +P +I F
Sbjct: 300 AKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDGLLLK------DNPQKTITFNA 353
Query: 471 T--VIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTM 528
T V+ S +++ FSS G + G +KPDI PG IL++ + N K +
Sbjct: 354 TPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSS-------VANNK--YAK 402
Query: 529 ISGTSMSCPHLSGIAALLK----SAHPDWSPA 556
+SGTS S P ++GI LL+ + +PD +P+
Sbjct: 403 LSGTSXSAPLVAGIXGLLQKQYETQYPDXTPS 434
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI+ PGV++ + +P ST+ ++GTSM+ PH++G+AAL+K +P WS I+
Sbjct: 191 DIVAPGVNVQSTYP---------GSTYASLNGTSMATPHVAGVAALVKQKNPSWSNVQIR 241
Query: 560 SAIMTTADIV---NLEGKPIMN 578
+ + TA + NL G ++N
Sbjct: 242 NHLKNTATGLGNTNLYGSGLVN 263
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 83/223 (37%), Gaps = 49/223 (21%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV + VLD GI+ HP I G +F+
Sbjct: 23 GSGVKVAVLDTGIST-HPDL-------------------------NIRGGASFVPGEPST 56
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G +AP A L KV S +
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVLG--------VAPSAELYAVKVLGASGSGSVSSIAQ 107
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANE 321
++ A G+ V ++SLGSPS + +G+LV ++GNSG S +
Sbjct: 108 GLEWAGNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPAR 164
Query: 322 APWMLTVGASTIDRSIVALTQLGN-----------QETYDGET 353
+ VGA+ + + + +Q G Q TY G T
Sbjct: 165 YANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST 207
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI+ PGV++ + +P ST+ ++GTSM+ PH++G AAL+K +P WS I+
Sbjct: 191 DIVAPGVNVQSTYP---------GSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAIMTTADIV---NLEGKPIMN 578
+ + TA + NL G ++N
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVN 263
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 80/223 (35%), Gaps = 49/223 (21%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV + VLD GI+ HP I G +F+
Sbjct: 23 GSGVRVAVLDTGIST-HPDL-------------------------NIRGGASFVPGEPST 56
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G+AP A L KV S +
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVL--------GVAPSAELYAVKVLGASGSGSYSSIAQ 107
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANE 321
++ A G+ V S+SL P + +G+LV ++GNSG S +
Sbjct: 108 GLEWAGNNGMHVASLSL---GSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPAR 164
Query: 322 APWMLTVGASTIDRSIVALTQLGN-----------QETYDGET 353
+ VGA+ + + + +Q G Q TY G T
Sbjct: 165 YANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST 207
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI+ PGV++ + +P ST+ ++GTSM+ PH++G AAL+K +P WS I+
Sbjct: 191 DIVAPGVNVQSTYP---------GSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAIMTTADIV---NLEGKPIMN 578
+ + TA + NL G ++N
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVN 263
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 83/223 (37%), Gaps = 49/223 (21%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV + VLD GI+ HP I G +F+
Sbjct: 23 GSGVKVAVLDTGIST-HPDL-------------------------NIRGGASFVPGEPST 56
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G +AP A L KV S +
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVLG--------VAPNAELYAVKVLGASGSGSVSSIAQ 107
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANE 321
++ A G+ V ++SLGSPS + +G+LV ++GNSG S +
Sbjct: 108 GLEWAGNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPAR 164
Query: 322 APWMLTVGASTIDRSIVALTQLGN-----------QETYDGET 353
+ VGA+ + + + +Q G Q TY G T
Sbjct: 165 YANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST 207
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI+ PGV++ + +P ST+ ++GTSM+ PH++G AAL+K +P WS I+
Sbjct: 191 DIVAPGVNVQSTYP---------GSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAIMTTADIV---NLEGKPIMN 578
+ + TA + NL G ++N
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVN 263
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 84/223 (37%), Gaps = 49/223 (21%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV + VLD GI+ HP I G +F+
Sbjct: 23 GSGVKVAVLDTGIST-HPDL-------------------------NIRGGASFVPGEPST 56
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G +AP A L KV G S +
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVLG--------VAPNAELYAVKVLGASGGGSNSSIAQ 107
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANE 321
++ A G+ V ++SLGSPS + +G+LV ++GNSG S +
Sbjct: 108 GLEWAGNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPAR 164
Query: 322 APWMLTVGASTIDRSIVALTQLGN-----------QETYDGET 353
+ VGA+ + + + +Q G Q TY G T
Sbjct: 165 YANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST 207
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI+ PGV++ + +P ST+ ++GTSM+ PH++G AAL+K +P WS I+
Sbjct: 191 DIVAPGVNVQSTYP---------GSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAIMTTADIV---NLEGKPIMN 578
+ + TA + NL G ++N
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVN 263
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 85/223 (38%), Gaps = 49/223 (21%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV + VLD GI+ HP I G +F+
Sbjct: 23 GSGVKVAVLDTGIST-HPDL-------------------------NIRGGASFVPGEPST 56
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G +AP A L KV D S +
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVLG--------VAPSAELYAVKVLGADGRGAISSIAQ 107
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANE 321
++ A G+ V ++SLGSPS + +G+LV ++GNSG +S +
Sbjct: 108 GLEWAGNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGASSISYPAR 164
Query: 322 APWMLTVGASTIDRSIVALTQLGN-----------QETYDGET 353
+ VGA+ + + + +Q G Q TY G T
Sbjct: 165 YANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST 207
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI+ PGV++ + +P ST+ ++GTSM+ PH++G AAL+K +P WS I+
Sbjct: 191 DIVAPGVNVQSTYP---------GSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAIMTTADIV---NLEGKPIMN 578
+ + TA + NL G ++N
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVN 263
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 83/223 (37%), Gaps = 49/223 (21%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV + VLD GI+ HP I G +F+
Sbjct: 23 GSGVKVAVLDTGIST-HPDL-------------------------NIRGGASFVPGEPST 56
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G +AP A L KV S +
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVLG--------VAPSAELYAVKVLGASGSGSVSSIAQ 107
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANE 321
++ A G+ V ++SLGSPS + +G+LV ++GNSG S +
Sbjct: 108 GLEWAGNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPAR 164
Query: 322 APWMLTVGASTIDRSIVALTQLGN-----------QETYDGET 353
+ VGA+ + + + +Q G Q TY G T
Sbjct: 165 YANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST 207
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 20/102 (19%)
Query: 465 SIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKS 524
S++ G V S+ + A FSS GP D++ PGVSI + P +
Sbjct: 164 SVIAVGAV---DSSNQRAPFSSVGPEL--------DVMAPGVSICSTLPGGK-------- 204
Query: 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTA 566
+ +SGTSM+ PH++G AAL+ S HP+W+ ++S++ TA
Sbjct: 205 -YGALSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTA 245
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 53/141 (37%), Gaps = 42/141 (29%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + VL GI HP + G GA +++ P
Sbjct: 23 GSNVKVAVLASGIDSSHPDLNVAG------------------------GASFVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A GT +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQASWIIN 100
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLGSPS
Sbjct: 101 GIEWAIANNMDVINMSLGSPS 121
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 20/150 (13%)
Query: 432 TVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNT 491
TV D V + V+ AAG + ST A V SA + A FSS G
Sbjct: 137 TVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSANQRASFSSAGS-- 194
Query: 492 ASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHP 551
+ D++ PGVSI + P T+ +GTSM+ PH++G AAL+ S HP
Sbjct: 195 ------ELDVMAPGVSIQSTLP---------GGTYGAYNGTSMATPHVAGAAALILSKHP 239
Query: 552 DWSPAAIKSAIMTTADIVN---LEGKPIMN 578
W+ A ++ + +TA + GK ++N
Sbjct: 240 TWTNAQVRDRLESTATYLGSSFYYGKGLIN 269
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 68/176 (38%), Gaps = 36/176 (20%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP + G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVRG------------------------GASFVPSETNPY 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D HGTH A T A N + G +AP A L KV ++ S +
Sbjct: 59 QDGSSHGTHVAGTIAA-LNNSIGVLG--------VAPSASLYAVKVLDSTGSGQYSWIIN 109
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSST 317
I+ A+ +DV+++SLG P+ GI+V+ +AGN G + ST
Sbjct: 110 GIEWAISNNMDVINMSLGGPT---GSTALKTVVDKAVSSGIVVAAAAGNEGSSGST 162
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 158/397 (39%), Gaps = 68/397 (17%)
Query: 201 PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPL--AHLAIYKVC-ETDLGCPES 257
P +N+ HGTH A T A N N G+ P A++ I KV E G S
Sbjct: 59 PGNNNAHGTHVAGTIAA-IAN--------NEGVVGVMPNQNANIHIVKVFNEAGWGYSSS 109
Query: 258 IVNAAIDAAVEEG-VDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSS 316
+V AAID V G +V+++SLG G+L+ +AGN+G +S
Sbjct: 110 LV-AAIDTCVNSGGANVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSY 165
Query: 317 TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDG--ETIFQPKDFPSKQLPLVYPGVKN 374
+ +++V A + A +Q +Q G E I +L + G ++
Sbjct: 166 SYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQS 225
Query: 375 SSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVA 434
+ +P + GT + G A +N F G +A
Sbjct: 226 YFSNGVVPHNRLTPS------------GTSYAPAPINASATGALAECTVNGTSFSCGNMA 273
Query: 435 DNHVLPAVYVSYAAGERIKAY--INSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTA 492
+ L G + +Y INST + A + V+S N+A
Sbjct: 274 NKICLVE-----RVGNQGSSYPEINSTKA-----------CKTAGAKGIIVYS----NSA 313
Query: 493 SPGILKP-------DIIGPGVSI-------LAAWPFSEENITNT-KSTFTMISGTSMSCP 537
PG+ P DI P VS+ L A ++N + +GTSM+ P
Sbjct: 314 LPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATP 373
Query: 538 HLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGK 574
H+SG+A L+ S HP+ S + +++A+ TAD +++ G+
Sbjct: 374 HVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR 410
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI+ PGV++ + +P ST+ ++GT M+ PH++G AAL+K +P WS I+
Sbjct: 191 DIVAPGVNVQSTYP---------GSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAIMTTADIV---NLEGKPIMN 578
+ + TA + NL G ++N
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVN 263
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 80/223 (35%), Gaps = 49/223 (21%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV + VLD GI+ HP I G +F+
Sbjct: 23 GSGVRVAVLDTGIST-HPDL-------------------------NIRGGASFVPGEPST 56
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G+AP A L KV S +
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVL--------GVAPSAELYAVKVLGASGSGSYSSIAQ 107
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANE 321
++ A G+ V S+SL P + +G+LV ++GNSG S +
Sbjct: 108 GLEWAGNNGMHVASLSL---GSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPAR 164
Query: 322 APWMLTVGASTIDRSIVALTQLGN-----------QETYDGET 353
+ VGA+ + + + +Q G Q TY G T
Sbjct: 165 YANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST 207
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 20/102 (19%)
Query: 465 SIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKS 524
S++ G V S+ + A FSS GP D++ PGVSI + P +
Sbjct: 164 SVIAVGAV---DSSNQRAPFSSVGPEL--------DVMAPGVSICSTLPGGK-------- 204
Query: 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTA 566
+ +SGT+M+ PH++G AAL+ S HP+W+ ++S++ TA
Sbjct: 205 -YGALSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTA 245
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 53/141 (37%), Gaps = 42/141 (29%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + VL GI HP + G GA +++ P
Sbjct: 23 GSNVKVAVLASGIDSSHPDLNVAG------------------------GASFVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A GT +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQASWIIN 100
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLGSPS
Sbjct: 101 GIEWAIANNMDVINMSLGSPS 121
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI+ PGV++ + +P ST+ ++GT M+ PH++G AAL+K +P WS I+
Sbjct: 191 DIVAPGVNVQSTYP---------GSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAIMTTADIV---NLEGKPIMN 578
+ + TA + NL G ++N
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVN 263
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 83/223 (37%), Gaps = 49/223 (21%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV + VLD GI+ HP I G +F+
Sbjct: 23 GSGVKVAVLDTGIST-HPDL-------------------------NIRGGASFVPGEPST 56
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G +AP A L KV S +
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVLG--------VAPNAELYAVKVLGASGSGSVSSIAQ 107
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANE 321
++ A G+ V ++SLGSPS + +G+LV ++GNSG S +
Sbjct: 108 GLEWAGNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPAR 164
Query: 322 APWMLTVGASTIDRSIVALTQLGN-----------QETYDGET 353
+ VGA+ + + + +Q G Q TY G T
Sbjct: 165 YANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST 207
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI+ PGV++ + +P ST+ ++GT M+ PH++G AAL+K +P WS I+
Sbjct: 191 DIVAPGVNVQSTYP---------GSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAIMTTADIV---NLEGKPIMN 578
+ + TA + NL G ++N
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVN 263
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 81/223 (36%), Gaps = 49/223 (21%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV + VLD GI+ HP I G +F+
Sbjct: 23 GSGVKVAVLDTGIST-HPDL-------------------------NIRGGASFVPGEPST 56
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G +AP A L KV S +
Sbjct: 57 QDGNGHGTHVAGTIAA-LDNSIGVLG--------VAPSAELYAVKVLGASGSGAISSIAQ 107
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANE 321
++ A G+ V ++SLGSPS + +G+LV ++GN G S
Sbjct: 108 GLEWAGNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNEGAGSIDYPAR 164
Query: 322 APWMLTVGASTIDRSIVALTQLGN-----------QETYDGET 353
+ VGA+ + + + +Q G Q TY G T
Sbjct: 165 YANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST 207
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI+ PGV++ + +P ST+ ++GT M+ PH++G AAL+K +P WS I+
Sbjct: 191 DIVAPGVNVQSTYP---------GSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAIMTTADIV---NLEGKPIMN 578
+ + TA + NL G ++N
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVN 263
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 83/223 (37%), Gaps = 49/223 (21%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G GV + VLD GI+ HP I G +F+
Sbjct: 23 GSGVKVAVLDTGIST-HPDL-------------------------NIRGGASFVPGEPST 56
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G +AP A L KV S +
Sbjct: 57 QDGNGHGTHVAGTIAA-LDNSIGVLG--------VAPSAELYAVKVLGASGSGAISSIAQ 107
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANE 321
++ A G+ V ++SLGSPS + +G+LV ++GNSG S +
Sbjct: 108 GLEWAGNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPAR 164
Query: 322 APWMLTVGASTIDRSIVALTQLGN-----------QETYDGET 353
+ VGA+ + + + +Q G Q TY G T
Sbjct: 165 YANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST 207
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 20/101 (19%)
Query: 465 SIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKS 524
S++ G V S+ + A FSS GP D++ PGVSI + P ++
Sbjct: 173 SVIAVGAV---DSSNQRASFSSVGPEL--------DVMAPGVSIXSTLPGNK-------- 213
Query: 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
+ SGTSM+ PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 214 -YGAYSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 35/142 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL-NKSEP 200
G V + V+D GI HP K+ G +F+ +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASFVPSETNP 57
Query: 201 PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVN 260
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 58 FQDNNSHGTHVAGTVAA-LDNSIGVLG--------VAPSASLYAVKVLGADGSGQYSWII 108
Query: 261 AAIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 109 NGIEWAIANNMDVINMSLGGPS 130
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI + P ++ + SGTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIXSTLPGNK---------YGAYSGTSMAS 224
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 35/142 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL-NKSEP 200
G V + V+D GI HP K+ G +F+ +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASFVPSETNP 57
Query: 201 PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVN 260
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 58 FQDNNSHGTHVAGTVAA-LDNSIGVLG--------VAPSASLYAVKVLGADGSGQYSWII 108
Query: 261 AAIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 109 NGIEWAIANNMDVINMSLGGPS 130
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP + D++ PGVSI + P ++ + SGTSM+
Sbjct: 173 SSNQRASFSSVGP--------ELDVMAPGVSICSTLPGNK---------YGAKSGTSMAS 215
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 53/141 (37%), Gaps = 42/141 (29%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP + G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVAG------------------------GASFVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A GT +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIIN 100
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 101 GIEWAIANNMDVINMSLGGPS 121
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
D+ PG SI +AW ++ + T T ++GTSM+ PH++G+AAL +P +PA++
Sbjct: 196 DLFAPGASIPSAW-YTSDTATQT------LNGTSMATPHVAGVAALYLEQNPSATPASVA 248
Query: 560 SAIMTTADIVNLEG 573
SAI+ A L G
Sbjct: 249 SAILNGATTGRLSG 262
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI + P ++ + SGTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK---------YGAKSGTSMAS 224
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 35/142 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL-NKSEP 200
G V + V+D GI HP K+ G +F+ +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASFVPSETNP 57
Query: 201 PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVN 260
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 58 FQDNNSHGTHVAGTVAA-LDNSIGVLG--------VAPSASLYAVKVLGADGSGQYSWII 108
Query: 261 AAIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 109 NGIEWAIANNMDVINMSLGGPS 130
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI + P ++ + +GTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK---------YGAYNGTSMAS 224
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLQNT 253
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 33/141 (23%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAG------------------------GASMVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVAGTVAA-LNNSIGVLG--------VAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 110 GIEWAIANNMDVINMSLGGPS 130
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI + P ++ + SGTSM+
Sbjct: 173 SSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK---------YGAKSGTSMAS 215
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 53/141 (37%), Gaps = 42/141 (29%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP + G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVAG------------------------GASFVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A GT +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIIN 100
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 101 GIEWAIANNMDVINMSLGGPS 121
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 20/101 (19%)
Query: 465 SIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKS 524
S++ G V S+ + A FSS GP D++ PGVSI + P ++
Sbjct: 173 SVIAVGAV---DSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------- 213
Query: 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
+ +GTSM+ PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 214 -YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNT 253
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 37/143 (25%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP K+ G + + P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASMVPSETPN 57
Query: 202 I-DNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVC-ETDLGCPESIV 259
D++ HGTH A T A N + G +AP + L KV + G I+
Sbjct: 58 FQDDNSHGTHVAGTVAA-LNNSIGVLG--------VAPSSALYAVKVLGDAGSGQYSWII 108
Query: 260 NAAIDAAVEEGVDVLSISLGSPS 282
N I+ A+ +DV+++SLG PS
Sbjct: 109 NG-IEWAIANNMDVINMSLGGPS 130
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI + P ++ + SGTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK---------YGAKSGTSMAS 224
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 35/142 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL-NKSEP 200
G V + V+D GI HP K+ G +F+ +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASFVPSETNP 57
Query: 201 PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVN 260
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 58 FQDNNSHGTHVAGTVAA-LNNSIGVLG--------VAPCASLYAVKVLGADGSGQYSWII 108
Query: 261 AAIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 109 NGIEWAIANNMDVINMSLGGPS 130
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 41/209 (19%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V +G++D GI H K++G +F++
Sbjct: 23 GANVKVGIIDTGIASSHTDL-------------------------KVVGGASFVSGESYN 57
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G +AP L KV + S + +
Sbjct: 58 TDGNGHGTHVAGTVAA-LDNTTGVLG--------VAPNVSLYAIKVLNSSGSGSYSAIVS 108
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSS--TLA 319
I+ A + G+DV+++SLG PS GI+V +AGNSG + S T+
Sbjct: 109 GIEWATQNGLDVINMSLGGPS---GSTALKQAVDKAYASGIVVVAAAGNSGNSGSQNTIG 165
Query: 320 NEAPW--MLTVGASTIDRSIVALTQLGNQ 346
A + ++ VGA +++ + + +G++
Sbjct: 166 YPAKYDSVIAVGAVDSNKNRASFSSVGSE 194
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 43/67 (64%), Gaps = 9/67 (13%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
+++ PGVS+ + +P +T+T ++GTSM+ PH++G AAL+ S +P S + ++
Sbjct: 196 EVMAPGVSVYSTYP---------SNTYTSLNGTSMASPHVAGAAALILSKYPTLSASQVR 246
Query: 560 SAIMTTA 566
+ + +TA
Sbjct: 247 NRLSSTA 253
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI++ P ++ + SGT+M+
Sbjct: 173 SSNQRASFSSVGPEL--------DVMAPGVSIVSTLPGNK---------YGAKSGTAMAS 215
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 42/141 (29%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V++ GI HP + G GA +++ P
Sbjct: 23 GSNVKVAVINSGIDSSHPDLNVAG------------------------GASFVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A GT +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIIN 100
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 101 GIEWAIANNMDVINMSLGGPS 121
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 9/72 (12%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI PG SI ++W ++ + TNT ISGTSM+ PH++G+AAL +P+ SPA +
Sbjct: 198 DIYAPGSSITSSW-YTSNSATNT------ISGTSMASPHVAGVAALYLDENPNLSPAQVT 250
Query: 560 SAIMT--TADIV 569
+ + T TAD V
Sbjct: 251 NLLKTRATADKV 262
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI++ P ++ + SGT+M+
Sbjct: 173 SSNQRASFSSVGPEL--------DVMAPGVSIVSTLPGNK---------YGAKSGTAMAS 215
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 53/141 (37%), Gaps = 42/141 (29%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP + G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVAG------------------------GASFVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A GT +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIIN 100
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 101 GIEWAIANNMDVINMSLGGPS 121
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI + P ++ + SGTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK---------YGAKSGTSMAS 224
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 35/142 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL-NKSEP 200
G V + V+D GI HP K+ G +F+ +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASFVPSETNP 57
Query: 201 PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVN 260
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 58 FQDNNSHGTHVAGTVAA-LNNSIGVLG--------VAPCASLYAVKVLGADGSGQYSWII 108
Query: 261 AAIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 109 NGIEWAIANNMDVINMSLGGPS 130
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 20/101 (19%)
Query: 465 SIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKS 524
S++ G V S+ + A FSS GP D++ PGVSI + P ++
Sbjct: 173 SVIAVGAV---DSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------- 213
Query: 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
+ +GTSM+ PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 214 -YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 33/141 (23%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAG------------------------GASMVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVAGTVAA-LNNSIGVLG--------VAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 110 GIEWAIANNMDVINMSLGGPS 130
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 20/101 (19%)
Query: 465 SIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKS 524
S++ G V S+ + A FSS GP D++ PGVSI + P ++
Sbjct: 173 SVIAVGAV---DSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------- 213
Query: 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
+ +GTSM+ PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 214 -YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 33/141 (23%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAG------------------------GASMVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVAGTVAA-LNNSIGVLG--------VAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 110 GIEWAIANNMDVINMSLGGPS 130
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI + P ++ + +GTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK---------YGAYNGTSMAS 224
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 33/141 (23%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAG------------------------GASMVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVAGTVAA-LNNSIGVLG--------VAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 110 GIEWAIANNMDVINMSLGGPS 130
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 20/101 (19%)
Query: 465 SIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKS 524
S++ G V S+ + A FSS GP D++ PGVSI + P ++
Sbjct: 173 SVIAVGAV---DSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------- 213
Query: 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
+ SGT M+ PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 214 -YGAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 33/141 (23%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAG------------------------GASMVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVAGTVAA-LNNSIGVLG--------VAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 110 GIEWAIANNMDVINMSLGGPS 130
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 432 TVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNT 491
TV D V + V+ AAG + ST A V S+ + A FSS G
Sbjct: 137 TVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSAGS-- 194
Query: 492 ASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHP 551
+ D++ PGVSI + P T+ +GT M+ PH++G AAL+ S HP
Sbjct: 195 ------ELDVMAPGVSIQSTLP---------GGTYGAYNGTCMATPHVAGAAALILSKHP 239
Query: 552 DWSPAAIKSAIMTTADIVN---LEGKPIMN 578
W+ A ++ + +TA + GK ++N
Sbjct: 240 TWTNAQVRDRLESTATYLGNSFYYGKGLIN 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 36/176 (20%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP + G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVRG------------------------GASFVPSETNPY 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D HGTH A T A N + G ++P A L KV ++ S +
Sbjct: 59 QDGSSHGTHVAGTIAA-LNNSIGVLG--------VSPSASLYAVKVLDSTGSGQYSWIIN 109
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSST 317
I+ A+ +DV+++SLG P+ GI+V+ +AGN G + ST
Sbjct: 110 GIEWAISNNMDVINMSLGGPT---GSTALKTVVDKAVSSGIVVAAAAGNEGSSGST 162
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 20/101 (19%)
Query: 465 SIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKS 524
S++ G V S+ + A FSS GP D++ PGVSI + P ++
Sbjct: 173 SVIAVGAV---DSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------- 213
Query: 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
+ SGT M+ PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 214 -YGAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 33/141 (23%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAG------------------------GASMVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVAGTVAA-LNNSIGVLG--------VAPCASLYAVKVLGADGSGQYSWIIN 109
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 110 GIEWAIANNMDVINMSLGGPS 130
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 432 TVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNT 491
TV D V + V+ AAG + ST A V S+ + A FSS G
Sbjct: 137 TVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSVGS-- 194
Query: 492 ASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHP 551
+ D++ PGVSI + P T+ +GT M+ PH++G AAL+ S HP
Sbjct: 195 ------ELDVMAPGVSIQSTLP---------GGTYGAYNGTXMATPHVAGAAALILSKHP 239
Query: 552 DWSPAAIKSAIMTTADIVN---LEGKPIMN 578
W+ A ++ + +TA + GK ++N
Sbjct: 240 TWTNAQVRDRLESTATYLGNSFYYGKGLIN 269
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 68/176 (38%), Gaps = 36/176 (20%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP + G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVRG------------------------GASFVPSETNPY 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D HGTH A T A N + G +AP A L KV ++ S +
Sbjct: 59 QDGSSHGTHVAGTIAA-LNNSIGVLG--------VAPSASLYAVKVLDSTGSGQYSWIIN 109
Query: 262 AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSST 317
I+ A+ +DV+++SLG P+ GI+V+ +AGN G + ST
Sbjct: 110 GIEWAISNNMDVINMSLGGPT---GSTALKTVVDKAVSSGIVVAAAAGNEGSSGST 162
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI + P ++ + SGT M+
Sbjct: 173 SSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK---------YGAKSGTXMAS 215
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 53/141 (37%), Gaps = 42/141 (29%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP + G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLNVAG------------------------GASFVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A GT +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWIIN 100
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 101 GIEWAIANNMDVINMSLGGPS 121
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI + P ++ + SGT M+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK---------YGAKSGTXMAS 224
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 35/142 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL-NKSEP 200
G V + V+D GI HP K+ G +F+ +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASFVPSETNP 57
Query: 201 PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVN 260
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 58 FQDNNSHGTHVAGTVAA-LNNSIGVLG--------VAPSASLYAVKVLGADGSGQYSWII 108
Query: 261 AAIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 109 NGIEWAIANNMDVINMSLGGPS 130
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI + P ++ + SGT M+
Sbjct: 170 SSNQRASFSSVGPEL--------DVMAPGVSIWSTLPGNK---------YGAKSGTXMAS 212
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 213 PHVAGAAALILSKHPNWTNTQVRSSLENT 241
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 44/142 (30%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL-NKSEP 200
G V + V+D GI HP+ K+ G +F+ +++ P
Sbjct: 20 GSNVKVAVIDSGIDSSHPAL-------------------------KVAGGASFVPSETNP 54
Query: 201 PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVN 260
DN+ HGTH A GT +AP A L KV D S +
Sbjct: 55 FQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLGADGSGQYSWII 96
Query: 261 AAIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 97 NGIEWAIANNMDVINMSLGGPS 118
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI + P ++ + +GT M+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK---------YGAYNGTXMAS 224
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 33/141 (23%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAG------------------------GASMVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVAGTVAA-LNNSIGVLG--------VAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 110 GIEWAIANNMDVINMSLGGPS 130
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI + P ++ + +GT M+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK---------YGAYNGTXMAS 224
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 33/141 (23%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAG------------------------GASMVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVAGTVAA-LNNSIGVLG--------VAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ +DV+++SLG PS
Sbjct: 110 GIEWAIANNMDVINMSLGGPS 130
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 31/138 (22%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G G I ++D G+ HP +L G K++G +F++ P
Sbjct: 29 GSGAKIAIVDTGVQSNHP------------------DLAG-----KVVGGWDFVDNDSTP 65
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
+ +GHGTH A AA N + AG AP A + +V + + V
Sbjct: 66 QNGNGHGTHCAGIAAAVTNNSTGI--------AGTAPKASILAVRVLDNSGSGTWTAVAN 117
Query: 262 AIDAAVEEGVDVLSISLG 279
I A ++G V+S+SLG
Sbjct: 118 GITYAADQGAKVISLSLG 135
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
D+ PG SI + +P ST+ +SGTSM+ PH++G+A LL S S + I+
Sbjct: 201 DVAAPGSSIYSTYP---------TSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIR 249
Query: 560 SAIMTTADIVNLEG 573
+AI TAD ++ G
Sbjct: 250 AAIENTADKISGTG 263
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 31/138 (22%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G G I ++D G+ HP +L G K++G +F++ P
Sbjct: 29 GSGAKIAIVDTGVQSNHP------------------DLAG-----KVVGGWDFVDNDSTP 65
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
+ +GHGTH A AA N + AG AP A + +V + + V
Sbjct: 66 QNGNGHGTHCAGIAAAVTNNSTGI--------AGTAPKASILAVRVLDNSGSGTWTAVAN 117
Query: 262 AIDAAVEEGVDVLSISLG 279
I A ++G V+S+SLG
Sbjct: 118 GITYAADQGAKVISLSLG 135
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
D+ PG I + +P ST+ +SGTSM+ PH++G+A LL S S + I+
Sbjct: 201 DVAAPGSWIYSTYP---------TSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIR 249
Query: 560 SAIMTTADIVNLEG 573
+AI TAD ++ G
Sbjct: 250 AAIENTADKISGTG 263
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 17/89 (19%)
Query: 477 SAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSC 536
S+ + A FSS GP D++ PGVSI + P ++ + +GTS +
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK---------YGAYNGTSXAS 224
Query: 537 PHLSGIAALLKSAHPDWSPAAIKSAIMTT 565
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 53/141 (37%), Gaps = 33/141 (23%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + V+D GI HP G GA +++ P
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAG------------------------GASMVPSETNPF 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
DN+ HGTH A T A N + G +AP A L KV D S +
Sbjct: 59 QDNNSHGTHVAGTVAA-LNNSIGVLG--------VAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A+ DV++ SLG PS
Sbjct: 110 GIEWAIANNXDVINXSLGGPS 130
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 29/184 (15%)
Query: 406 IRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLP-AVYVSYAAGERIKAYINSTSSPTA 464
IR D A G I+ G+ A+N ++ AV +Y+ G I A ++
Sbjct: 120 IRHAADQATATGTKTIIS----MSLGSSANNSLISSAVNYAYSKGVLIVAAAGNSGYSQG 175
Query: 465 SIVFKGTV-----------IGKKSAPEVAVFSSRGP-NTASPGILKP---DIIGPGVSIL 509
+I + G + + + VA +SSRG +TA +++ +I PG S+
Sbjct: 176 TIGYPGALPNAIAVAALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVY 235
Query: 510 AAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIV 569
+ W + ISGTSM+ PH+SG+AA + + +P S ++S + A V
Sbjct: 236 STW---------YNGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSV 286
Query: 570 NLEG 573
+++G
Sbjct: 287 DIKG 290
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 75/182 (41%), Gaps = 34/182 (18%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G G+ I VLD G+ HP + +C+ GA +N S
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVNN---------VEQCK--------DFTGATTPINNS--C 65
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKV-CETDLGCPESIVN 260
D +GHGTH A TA +G G G+AP A L YKV ++ G + I
Sbjct: 66 TDRNGHGTHVAGTA---LADG----GSDQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAA 118
Query: 261 A---AIDAAVEEGVD-VLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSS 316
A A D A G ++S+SLGS + KG+L+ +AGNSG +
Sbjct: 119 AIRHAADQATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQG 175
Query: 317 TL 318
T+
Sbjct: 176 TI 177
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 82/221 (37%), Gaps = 50/221 (22%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W+ S G G IIGV+D G HP ++ +IIG N
Sbjct: 34 WRASAKGAGQIIGVIDTGCQVDHPDLAE-----------------------RIIGGVNLT 70
Query: 196 NK---SEPPI-DNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETD 251
E DN+GHGTH A T A + G+AP A L I K D
Sbjct: 71 TDYGGDETNFSDNNGHGTHVAGTVAA---------AETGSGVVGVAPKADLFIIKALSGD 121
Query: 252 LGCPESIVNAAIDAAVE------EGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVS 305
+ AI AV+ E + ++++SLG P+ + V
Sbjct: 122 GSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVV 178
Query: 306 CSAGNSG---PNSSTLANEAPW--MLTVGASTIDRSIVALT 341
C+AGN G +++ A A + ++ VGA D + T
Sbjct: 179 CAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFT 219
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALL 546
DI+ PGV I + T S + +SGT+M+ PH++G AL+
Sbjct: 226 DIVAPGVGIKS---------TYLDSGYAELSGTAMAAPHVAGALALI 263
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 80/201 (39%), Gaps = 38/201 (18%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W + G I V+D G+ HP +L+G K+I +F+
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHP------------------DLDG-----KVIKGYDFV 60
Query: 196 NKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAH-LAIYKVCETDLGC 254
+ P+D + HGTH A AA N + AGMAP LA+ + G
Sbjct: 61 DNDYDPMDLNNHGTHVAGIAAAETNNATGI--------AGMAPNTRILAVRALDRNGSGT 112
Query: 255 PESIVNAAIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPN 314
I +A I AA + G +V+++SLG KG +V +AGN+G
Sbjct: 113 LSDIADAIIYAA-DSGAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNG-- 166
Query: 315 SSTLANEAPWMLTVGASTIDR 335
SST A + + +D+
Sbjct: 167 SSTTFEPASYENVIAVGAVDQ 187
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
D++ PGV I++ T T + + +SGTSM+ PH++G+AALL S + I+
Sbjct: 202 DVVAPGVDIVS---------TITGNRYAYMSGTSMASPHVAGLAALLASQGRN--NIEIR 250
Query: 560 SAIMTTADIVNLEG 573
AI TAD ++ G
Sbjct: 251 QAIEQTADKISGTG 264
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
+++ PG + + +P TNT +T ++GTSM+ PH++G AAL+ S HP+ S + ++
Sbjct: 196 EVMAPGAGVYSTYP------TNTYAT---LNGTSMASPHVAGAAALILSKHPNLSASQVR 246
Query: 560 SAIMTTADIVN---LEGKPIMN 578
+ + +TA + GK ++N
Sbjct: 247 NRLSSTATYLGSSFYYGKGLIN 268
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 34/141 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + VLD GI HP ++G +F+
Sbjct: 23 GANVKVAVLDTGIQASHPDL-------------------------NVVGGASFVAGEAYN 57
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G+AP L KV + S + +
Sbjct: 58 TDGNGHGTHVAGTVAA-LDNTTGVL--------GVAPSVSLYAVKVLNSSGSGSYSGIVS 108
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A G+DV+++SLG S
Sbjct: 109 GIEWATTNGMDVINMSLGGAS 129
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
+++ PG + + +P TNT +T ++GTSM+ PH++G AAL+ S HP+ S + ++
Sbjct: 196 EVMAPGAGVYSTYP------TNTYAT---LNGTSMASPHVAGAAALILSKHPNLSASQVR 246
Query: 560 SAIMTTADIVN---LEGKPIMN 578
+ + +TA + GK ++N
Sbjct: 247 NRLSSTATYLGSSFYYGKGLIN 268
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 34/141 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + VLD GI HP ++G +F+
Sbjct: 23 GANVKVAVLDTGIQASHPDL-------------------------NVVGGASFVAGEAYN 57
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G+AP L KV + S + +
Sbjct: 58 TDGNGHGTHVAGTVAA-LDNTTGVL--------GVAPSVSLYAVKVLNSSGSGSYSGIVS 108
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A G+DV+++SLG S
Sbjct: 109 GIEWATTNGMDVINMSLGGAS 129
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
+++ PG + + +P TNT +T ++GTSM+ PH++G AAL+ S HP+ S + ++
Sbjct: 196 EVMAPGAGVYSTYP------TNTYAT---LNGTSMASPHVAGAAALILSKHPNLSASQVR 246
Query: 560 SAIMTTADIVN---LEGKPIMN 578
+ + +TA + GK ++N
Sbjct: 247 NRLSSTATYLGSSFYYGKGLIN 268
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 34/141 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + VLD GI HP ++G +F+
Sbjct: 23 GANVKVAVLDTGIQASHPDL-------------------------NVVGGASFVAGEAYN 57
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G+AP L KV + S + +
Sbjct: 58 TDGNGHGTHVAGTVAA-LDNTTGVL--------GVAPSVSLYAVKVLNSSGSGSYSGIVS 108
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A G+DV+++SLG S
Sbjct: 109 GIEWATTNGMDVINMSLGGAS 129
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
+++ PG + + +P TNT +T ++GTSM+ PH++G AAL+ S HP+ S + ++
Sbjct: 197 EVMAPGAGVYSTYP------TNTYAT---LNGTSMASPHVAGAAALILSKHPNLSASQVR 247
Query: 560 SAIMTTADIVN---LEGKPIMN 578
+ + +TA + GK ++N
Sbjct: 248 NRLSSTATYLGSSFYYGKGLIN 269
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 34/141 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + VLD GI HP ++G +F+
Sbjct: 24 GANVKVAVLDTGIQASHPDL-------------------------NVVGGASFVAGEAYN 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G+AP L KV + S + +
Sbjct: 59 TDGNGHGTHVAGTVAA-LDNTTGVL--------GVAPSVSLYAVKVLNSSGSGSYSGIVS 109
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A G+DV+++SLG S
Sbjct: 110 GIEWATTNGMDVINMSLGGAS 130
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
+++ PG + + +P TNT +T ++GTSM+ PH++G AAL+ S HP+ S + ++
Sbjct: 197 EVMAPGAGVYSTYP------TNTYAT---LNGTSMASPHVAGAAALILSKHPNLSASQVR 247
Query: 560 SAIMTTADIVN---LEGKPIMN 578
+ + +TA + GK ++N
Sbjct: 248 NRLSSTATYLGSSFYYGKGLIN 269
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 34/141 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + VLD GI HP ++G +F+
Sbjct: 24 GANVKVAVLDTGIQASHPDL-------------------------NVVGGASFVAGEAYN 58
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G+AP L KV + S + +
Sbjct: 59 TDGNGHGTHVAGTVAA-LDNTTGVL--------GVAPSVSLYAVKVLNSSGSGSYSGIVS 109
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A G+DV+++SLG S
Sbjct: 110 GIEWATTNGMDVINMSLGGAS 130
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
+++ PG + + +P TNT +T ++GTSM+ PH++G AAL+ S HP+ S + ++
Sbjct: 196 EVMAPGAGVYSTYP------TNTYAT---LNGTSMASPHVAGAAALILSKHPNLSASQVR 246
Query: 560 SAIMTTADIVN---LEGKPIMN 578
+ + +TA + GK ++N
Sbjct: 247 NRLSSTATYLGSSFYYGKGLIN 268
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 34/141 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + VLD GI HP ++G +F+
Sbjct: 23 GANVKVAVLDTGIQASHPDL-------------------------NVVGGASFVAGEAYN 57
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G+AP L KV + S + +
Sbjct: 58 TDGNGHGTHVAGTVAA-LDNTTGVL--------GVAPSVSLYAVKVLNSSGSGSYSGIVS 108
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A G+DV+++SLG S
Sbjct: 109 GIEWATTNGMDVINMSLGGAS 129
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 85/227 (37%), Gaps = 51/227 (22%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W+ S G G IIGV+D G HP ++ +IIG N
Sbjct: 16 WRASAKGAGQIIGVIDTGCQVDHPDLAE-----------------------RIIGGVNLT 52
Query: 196 NK---SEPPI-DNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETD 251
E DN+GHGTH A T A + G+AP A L I K D
Sbjct: 53 TDYGGDETNFSDNNGHGTHVAGTVAA---------AETGSGVVGVAPKADLFIIKALSGD 103
Query: 252 LGCPESIVNAAIDAAVE------EGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVS 305
+ AI AV+ E + ++++SLG P+ + V
Sbjct: 104 GSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVV 160
Query: 306 CSAGNSG---PNSSTLANEAPW--MLTVGASTIDRSIVALTQLGNQE 347
C+AGN G +++ A A + ++ VGA D + T N+E
Sbjct: 161 CAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNT-NEE 206
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALL 546
DI+ PGV I + T S + +SGT+M+ PH++G AL+
Sbjct: 208 DIVAPGVGIKS---------TYLDSGYAELSGTAMAAPHVAGALALI 245
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 29/184 (15%)
Query: 406 IRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLP-AVYVSYAAGERIKAYINSTSSPTA 464
IR D A G I+ G+ A+N ++ AV +Y+ G I A ++
Sbjct: 120 IRHAADQATATGTKTIIS----MSLGSSANNSLISSAVNYAYSKGVLIVAAAGNSGYSQG 175
Query: 465 SIVFKGTV-----------IGKKSAPEVAVFSSRGP-NTASPGILKP---DIIGPGVSIL 509
+I + G + + + VA +SSRG +TA +++ +I PG S+
Sbjct: 176 TIGYPGALPNAIAVAALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVY 235
Query: 510 AAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIV 569
+ W + ISGT M+ PH+SG+AA + + +P S ++S + A V
Sbjct: 236 STW---------YNGGYNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSV 286
Query: 570 NLEG 573
+++G
Sbjct: 287 DIKG 290
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 75/182 (41%), Gaps = 34/182 (18%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G G+ I VLD G+ HP + +C+ GA +N S
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVNN---------VEQCK--------DFTGATTPINNS--C 65
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKV-CETDLGCPESIVN 260
D +GHGTH A TA +G G G+AP A L YKV ++ G + I
Sbjct: 66 TDRNGHGTHVAGTA---LADG----GSDQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAA 118
Query: 261 A---AIDAAVEEGVD-VLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSS 316
A A D A G ++S+SLGS + KG+L+ +AGNSG +
Sbjct: 119 AIRHAADQATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQG 175
Query: 317 TL 318
T+
Sbjct: 176 TI 177
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 42/157 (26%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W+ S G G IIGV+D G HP ++ +IIG N
Sbjct: 34 WRASAKGAGQIIGVIDTGXQVDHPDLAE-----------------------RIIGGVNLT 70
Query: 196 NK---SEPPI-DNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETD 251
E DN+GHGTH A T A + G+AP A L I K D
Sbjct: 71 TDYGGDETNFSDNNGHGTHVAGTVAA---------AETGSGVVGVAPKADLFIIKALSGD 121
Query: 252 LGCPESIVNAAIDAAVE------EGVDVLSISLGSPS 282
+ AI AV+ E + ++++SLG P+
Sbjct: 122 GSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPT 158
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALL 546
DI+ PGV I + T S + +SGT+M+ PH++G AL+
Sbjct: 226 DIVAPGVGIKS---------TYLDSGYAELSGTAMAAPHVAGALALI 263
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 42/157 (26%)
Query: 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL 195
W+ S G G IIGV+D G HP ++ +IIG N
Sbjct: 34 WRASAKGAGQIIGVIDTGCQVDHPDLAE-----------------------RIIGGVNLT 70
Query: 196 NK---SEPPI-DNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETD 251
E DN+GHGTH A T A + G+AP A L I K D
Sbjct: 71 TDYGGDETNFSDNNGHGTHVAGTVAA---------AETGSGVVGVAPKADLFIIKALSGD 121
Query: 252 LGCPESIVNAAIDAAVE------EGVDVLSISLGSPS 282
+ AI AV+ E + ++++SLG P+
Sbjct: 122 GSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPT 158
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALL 546
DI+ PGV I + T S + +SGT+M+ PH++G AL+
Sbjct: 226 DIVAPGVGIKS---------TYLDSGYAELSGTAMAAPHVAGALALI 263
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 12/82 (14%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
+++ PG + + +P TNT +T ++GT M+ PH++G AAL+ S HP+ S + ++
Sbjct: 196 EVMAPGAGVYSTYP------TNTYAT---LNGTXMASPHVAGAAALILSKHPNLSASQVR 246
Query: 560 SAIMTTADIVN---LEGKPIMN 578
+ + +TA + GK ++N
Sbjct: 247 NRLSSTATYLGSSFYYGKGLIN 268
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 34/141 (24%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G V + VLD GI HP ++G +F+
Sbjct: 23 GANVKVAVLDTGIQASHPDL-------------------------NVVGGASFVAGEAYN 57
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA 261
D +GHGTH A T A N + G+AP L KV + S + +
Sbjct: 58 TDGNGHGTHVAGTVAA-LDNTTGVL--------GVAPSVSLYAVKVLNSSGSGSYSGIVS 108
Query: 262 AIDAAVEEGVDVLSISLGSPS 282
I+ A G+DV+++SLG S
Sbjct: 109 GIEWATTNGMDVINMSLGGAS 129
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 77/188 (40%), Gaps = 38/188 (20%)
Query: 135 FWKDSNL-----GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKII 189
+ +SNL G G+ I VLD G+ HP S+ +E C + +
Sbjct: 13 IYNNSNLTSTSGGAGINIAVLDTGVNTNHPDLSNN--------------VE--QCKDFTV 56
Query: 190 GARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCE 249
G NF + S D GHGTH A +A N G+ ++ G+AP A L YKV
Sbjct: 57 G-TNFTDNS--CTDRQGHGTHVAGSALANGGTGSGVY--------GVAPEADLWAYKVLG 105
Query: 250 TD-LGCPESIVNA---AIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVS 305
D G + I A A D A V+ I++ S KG+L+
Sbjct: 106 DDGSGYADDIAEAIRHAGDQATALNTKVV-INM-SLGSSGESSLITNAVDYAYDKGVLII 163
Query: 306 CSAGNSGP 313
+AGNSGP
Sbjct: 164 AAAGNSGP 171
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 480 EVAVFSSRG-PNTASPGILKP---DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMS 535
VA FSSRG TA +++ +I PG ++ + W + ISGTSM+
Sbjct: 201 RVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTW---------FDGGYATISGTSMA 251
Query: 536 CPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNL 571
PH +G+AA + + P S ++ + T A + ++
Sbjct: 252 SPHAAGLAAKIWAQSPAASNVDVRGELQTRASVNDI 287
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI GPG SIL+ W T+S ISGTSM+ PH++G+AA L + + +A +
Sbjct: 200 DIFGPGTSILSTWIGGS-----TRS----ISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
Query: 560 SAIMTTADIVNLEGKPIMNHHLL 582
I TA+ +L P +LL
Sbjct: 251 -YIADTANKGDLSNIPFGTVNLL 272
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 54/211 (25%)
Query: 133 SGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGAR 192
S ++ D + G+G + V+D GI HP F +G+ ++ +
Sbjct: 21 STYYYDESAGQGSCVYVIDTGIEASHPEF------------EGRAQM-----------VK 57
Query: 193 NFLNKSEPPIDNDGHGTHTASTAAGN---FVNGANLFG----QANGTAAGMAPLAHLAIY 245
+ S D +GHGTH A T V LFG NG+ +A +
Sbjct: 58 TYYYSSR---DGNGHGTHCAGTVGSRTYGVVKKTQLFGVKVLDDNGSGQYSTIIAGMDFV 114
Query: 246 KVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVS 305
+ + CP+ + V S+SLG G++V+
Sbjct: 115 ASDKNNRNCPKGV--------------VASLSLGG----GYSSSVNSAAARLQSSGVMVA 156
Query: 306 CSAGNSGPNSSTLA-NEAPWMLTVGASTIDR 335
+AGN+ ++ + P + TVGAS DR
Sbjct: 157 VAAGNNNADARNYSPASEPSVCTVGAS--DR 185
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI GPG SIL+ W T+S ISGTSM+ PH++G+AA L + + +A +
Sbjct: 200 DIFGPGTSILSTWIGGS-----TRS----ISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
Query: 560 SAIMTTADIVNLEGKPIMNHHLL 582
I TA+ +L P +LL
Sbjct: 251 -YIADTANKGDLSNIPFGTVNLL 272
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 54/211 (25%)
Query: 133 SGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGAR 192
S ++ D + G+G + V+D GI HP F +G+ ++ +
Sbjct: 21 STYYYDESAGQGSCVYVIDTGIEASHPEF------------EGRAQM-----------VK 57
Query: 193 NFLNKSEPPIDNDGHGTHTASTAAGNFVNGA---NLFG----QANGTAAGMAPLAHLAIY 245
+ S D +GHGTH A T A LFG NG+ +A +
Sbjct: 58 TYYYSSR---DGNGHGTHCAGTVGSRTYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFV 114
Query: 246 KVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVS 305
+ + CP+ + V S+SLG G++V+
Sbjct: 115 ASDKNNRNCPKGV--------------VASLSLGG----GYSSSVNSAAARLQSSGVMVA 156
Query: 306 CSAGNSGPNSSTLA-NEAPWMLTVGASTIDR 335
+AGN+ ++ + P + TVGAS DR
Sbjct: 157 VAAGNNNADARNYSPASEPSVCTVGAS--DR 185
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 17/96 (17%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSE--------ENITNTKS-TFTMIS 530
VA FSSR S G+ + PGV+IL+ P + EN+ T T+
Sbjct: 327 RVAGFSSR-----SDGV---SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQ 378
Query: 531 GTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTA 566
GTSM+ PH++G+ A+L P+ P I+ + TA
Sbjct: 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTA 414
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENIT---NTKSTFTMISGTSMSC 536
VA FSSRGP G +KPD++ PG IL+A + + N S + + GTSM+
Sbjct: 201 HVAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 537 PHLSGIAALLK 547
P ++G A L+
Sbjct: 259 PIVAGNVAQLR 269
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 33/194 (17%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G+G I+ V D G+ G +D M ++GK I A L ++
Sbjct: 21 GQGQIVAVADTGLDTGR---NDSSMHE---AFRGK------------ITALYALGRTNNA 62
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPE--SIV 259
D +GHGTH A + GN T GMAP A+L + ++ G S +
Sbjct: 63 NDTNGHGTHVAGSVLGN-----------GSTNKGMAPQANLVFQSIMDSGGGLGGLPSNL 111
Query: 260 NAAIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLA 319
A G + + S G+ + + + +AGN GPN T++
Sbjct: 112 QTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTIS 171
Query: 320 --NEAPWMLTVGAS 331
A +TVGA+
Sbjct: 172 APGTAKNAITVGAT 185
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 29/127 (22%)
Query: 431 GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS-------IVFKGTVIGKKSAPEVAV 483
G D+++ + +Y AG I A + +P+ S ++ G + S +A
Sbjct: 157 GPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI---DSNDNIAS 213
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+R +P++ PGV IL+ +P ++ + GT+M+ PH+SG+
Sbjct: 214 FSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMATPHVSGVV 254
Query: 544 ALLKSAH 550
AL+++A+
Sbjct: 255 ALIQAAY 261
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 38/198 (19%)
Query: 147 IGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDG 206
+ VLD G+ HP + + + +GK + +C D +G
Sbjct: 31 VAVLDTGVDYDHPDLA-ANIAWCVSTLRGKVSTKLRDCA-----------------DQNG 72
Query: 207 HGTHTASTAAGNFVNGANLFGQANGT---------AAGMAPLAHLAIYKVCETDLGCPES 257
HGTH T A N + G A G A G + +AI + + LG P+
Sbjct: 73 HGTHVIGTIAA-LNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI-GIEQAILG-PDG 129
Query: 258 IVNAAIDAAV-----EEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSG 312
+ + D + ++ +V+S+SLG P+ GI++ ++GN G
Sbjct: 130 VADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEG 186
Query: 313 PNSSTLANEAPWMLTVGA 330
S + P ++ VGA
Sbjct: 187 APSPSYPAAYPEVIAVGA 204
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 29/127 (22%)
Query: 431 GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS-------IVFKGTVIGKKSAPEVAV 483
G D+++ + +Y AG I A + +P+ S ++ G + S +A
Sbjct: 237 GPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI---DSNDNIAS 293
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+R +P++ PGV IL+ +P ++ + GT+M+ PH+SG+
Sbjct: 294 FSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMATPHVSGVV 334
Query: 544 ALLKSAH 550
AL+++A+
Sbjct: 335 ALIQAAY 341
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 38/198 (19%)
Query: 147 IGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDG 206
+ VLD G+ HP + + + +GK + +C D +G
Sbjct: 111 VAVLDTGVDYDHPDLA-ANIAWCVSTLRGKVSTKLRDCA-----------------DQNG 152
Query: 207 HGTHTASTAAGNFVNGANLFGQANGT---------AAGMAPLAHLAIYKVCETDLGCPES 257
HGTH T A N + G A G A G + +AI + + LG P+
Sbjct: 153 HGTHVIGTIAA-LNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI-GIEQAILG-PDG 209
Query: 258 IVNAAIDAAV-----EEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSG 312
+ + D + ++ +V+S+SLG P+ GI++ ++GN G
Sbjct: 210 VADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEG 266
Query: 313 PNSSTLANEAPWMLTVGA 330
S + P ++ VGA
Sbjct: 267 APSPSYPAAYPEVIAVGA 284
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 29/127 (22%)
Query: 431 GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS-------IVFKGTVIGKKSAPEVAV 483
G D+++ + +Y AG I A + +P+ S ++ G + S +A
Sbjct: 159 GPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI---DSNDNIAS 215
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+R +P++ PGV IL+ +P ++ + GT+M+ PH+SG+
Sbjct: 216 FSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMATPHVSGVV 256
Query: 544 ALLKSAH 550
AL+++A+
Sbjct: 257 ALIQAAY 263
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 38/198 (19%)
Query: 147 IGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDG 206
+ VLD G+ HP + + + +GK + +C D +G
Sbjct: 33 VAVLDTGVDYDHPDLA-ANIAWCVSTLRGKVSTKLRDCA-----------------DQNG 74
Query: 207 HGTHTASTAAGNFVNGANLFGQANGT---------AAGMAPLAHLAIYKVCETDLGCPES 257
HGTH T A N + G A G A G + +AI + + LG P+
Sbjct: 75 HGTHVIGTIAA-LNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI-GIEQAILG-PDG 131
Query: 258 IVNAAIDAAV-----EEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSG 312
+ + D + ++ +V+S+SLG P+ GI++ ++GN G
Sbjct: 132 VADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEG 188
Query: 313 PNSSTLANEAPWMLTVGA 330
S + P ++ VGA
Sbjct: 189 APSPSYPAAYPEVIAVGA 206
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 29/127 (22%)
Query: 431 GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS-------IVFKGTVIGKKSAPEVAV 483
G D+++ + +Y AG I A + +P+ S ++ G + S +A
Sbjct: 168 GPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI---DSNDNIAS 224
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+R +P++ PGV IL+ +P ++ + GT+M+ PH+SG+
Sbjct: 225 FSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMATPHVSGVV 265
Query: 544 ALLKSAH 550
AL+++A+
Sbjct: 266 ALIQAAY 272
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 29/127 (22%)
Query: 431 GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS-------IVFKGTVIGKKSAPEVAV 483
G D+++ + +Y AG I A + +P+ S ++ G + S +A
Sbjct: 234 GPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI---DSNDNIAS 290
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+R +P++ PGV IL+ +P ++ + GT+M+ PH+SG+
Sbjct: 291 FSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMATPHVSGVV 331
Query: 544 ALLKSAH 550
AL+++A+
Sbjct: 332 ALIQAAY 338
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 38/198 (19%)
Query: 147 IGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDG 206
+ VLD G+ HP + + + +GK + +C D +G
Sbjct: 108 VAVLDTGVDYDHPDLA-ANIAWCVSTLRGKVSTKLRDCA-----------------DQNG 149
Query: 207 HGTHTASTAAGNFVNGANLFGQANGT---------AAGMAPLAHLAIYKVCETDLGCPES 257
HGTH T A N + G A G A G + +AI + + LG P+
Sbjct: 150 HGTHVIGTIAA-LNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI-GIEQAILG-PDG 206
Query: 258 IVNAAIDAAV-----EEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSG 312
+ + D + ++ +V+S+SLG P+ GI++ ++GN G
Sbjct: 207 VADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEG 263
Query: 313 PNSSTLANEAPWMLTVGA 330
S + P ++ VGA
Sbjct: 264 APSPSYPAAYPEVIAVGA 281
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 29/127 (22%)
Query: 431 GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS-------IVFKGTVIGKKSAPEVAV 483
G D+++ + +Y AG I A + +P+ S ++ G + S +A
Sbjct: 237 GPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI---DSNDNIAS 293
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+R +P++ PGV IL+ +P ++ + GT+M+ PH+SG+
Sbjct: 294 FSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMATPHVSGVV 334
Query: 544 ALLKSAH 550
AL+++A+
Sbjct: 335 ALIQAAY 341
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 38/198 (19%)
Query: 147 IGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDG 206
+ VLD G+ HP + + + +GK + +C D +G
Sbjct: 111 VAVLDTGVDYDHPDLA-ANIAWCVSTLRGKVSTKLRDCA-----------------DQNG 152
Query: 207 HGTHTASTAAGNFVNGANLFGQANGT---------AAGMAPLAHLAIYKVCETDLGCPES 257
HGTH T A N + G A G A G + +AI + + LG P+
Sbjct: 153 HGTHVIGTIAA-LNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI-GIEQAILG-PDG 209
Query: 258 IVNAAIDAAV-----EEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSG 312
+ + D + ++ +V+S+SLG P+ GI++ ++GN G
Sbjct: 210 VADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEG 266
Query: 313 PNSSTLANEAPWMLTVGA 330
S + P ++ VGA
Sbjct: 267 APSPSYPAAYPEVIAVGA 284
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 29/127 (22%)
Query: 431 GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS-------IVFKGTVIGKKSAPEVAV 483
G D+++ + +Y AG I A + +P+ S ++ G + S +A
Sbjct: 237 GPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI---DSNDNIAS 293
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+R +P++ PGV IL+ +P ++ + GT+M+ PH+SG+
Sbjct: 294 FSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMATPHVSGVV 334
Query: 544 ALLKSAH 550
AL+++A+
Sbjct: 335 ALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 29/127 (22%)
Query: 431 GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS-------IVFKGTVIGKKSAPEVAV 483
G D+++ + +Y AG I A + +P+ S ++ G + S +A
Sbjct: 237 GPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI---DSNDNIAS 293
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+R +P++ PGV IL+ +P ++ + GT+M+ PH+SG+
Sbjct: 294 FSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMATPHVSGVV 334
Query: 544 ALLKSAH 550
AL+++A+
Sbjct: 335 ALIQAAY 341
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
DI GPG IL+ W T+S ISGTSM+ PH++G+AA L + + +A +
Sbjct: 200 DIFGPGTDILSTWIGGS-----TRS----ISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
Query: 560 SAIMTTADIVNLEGKPIMNHHLL 582
I TA+ +L P +LL
Sbjct: 251 -YIADTANKGDLSNIPFGTVNLL 272
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 54/211 (25%)
Query: 133 SGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGAR 192
S ++ D + G+G + V+D GI HP F +G+ ++ +
Sbjct: 21 STYYYDESAGQGSCVYVIDTGIEASHPEF------------EGRAQM-----------VK 57
Query: 193 NFLNKSEPPIDNDGHGTHTASTAAGNFVNGA---NLFG----QANGTAAGMAPLAHLAIY 245
+ S D +GHGTH A T A LFG NG+ +A +
Sbjct: 58 TYYYSSR---DGNGHGTHCAGTVGSRTYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFV 114
Query: 246 KVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVS 305
+ + CP+ + V S+SLG G++V+
Sbjct: 115 ASDKNNRNCPKGV--------------VASLSLGG----GYSSSVNSAAARLQSSGVMVA 156
Query: 306 CSAGNSGPNSSTLA-NEAPWMLTVGASTIDR 335
+AGN+ ++ + P + TVGAS DR
Sbjct: 157 VAAGNNNADARNYSPASEPSVCTVGAS--DR 185
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 29/127 (22%)
Query: 431 GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS-------IVFKGTVIGKKSAPEVAV 483
G D+++ + +Y AG I A + +P+ S ++ G + S +A
Sbjct: 168 GPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI---DSNDNIAS 224
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+R +P++ PGV IL+ +P ++ + GT+M+ PH+SG+
Sbjct: 225 FSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMATPHVSGVV 265
Query: 544 ALLKSAH 550
AL+++A+
Sbjct: 266 ALIQAAY 272
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 38/198 (19%)
Query: 147 IGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDG 206
+ VLD G+ HP + + + +GK + +C D +G
Sbjct: 42 VAVLDTGVDYDHPDLA-ANIAWCVSTLRGKVSTKLRDCA-----------------DQNG 83
Query: 207 HGTHTASTAAGNFVNGANLFGQANGT---------AAGMAPLAHLAIYKVCETDLGCPES 257
HGTH T A N + G A G A G + +AI + + LG P+
Sbjct: 84 HGTHVIGTIAA-LNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI-GIAQAILG-PDG 140
Query: 258 IVNAAIDAAV-----EEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSG 312
+ + D + ++ +V+S+SLG P+ GI++ ++GN G
Sbjct: 141 VADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEG 197
Query: 313 PNSSTLANEAPWMLTVGA 330
S + P ++ VGA
Sbjct: 198 APSPSYPAAYPEVIAVGA 215
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 29/127 (22%)
Query: 431 GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS-------IVFKGTVIGKKSAPEVAV 483
G D+++ + +Y AG I A + +P+ S ++ G + S +A
Sbjct: 157 GPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI---DSNDNIAS 213
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+R +P++ PGV IL+ +P ++ + GT M+ PH+SG+
Sbjct: 214 FSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTXMATPHVSGVV 254
Query: 544 ALLKSAH 550
AL+++A+
Sbjct: 255 ALIQAAY 261
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 38/198 (19%)
Query: 147 IGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDG 206
+ VLD G+ HP + + + +GK + +C D +G
Sbjct: 31 VAVLDTGVDYDHPDLA-ANIAWCVSTLRGKVSTKLRDCA-----------------DQNG 72
Query: 207 HGTHTASTAAGNFVNGANLFGQANGT---------AAGMAPLAHLAIYKVCETDLGCPES 257
HGTH T A N + G A G A G + +AI + + LG P+
Sbjct: 73 HGTHVIGTIAA-LNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI-GIEQAILG-PDG 129
Query: 258 IVNAAIDAAV-----EEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSG 312
+ + D + ++ +V+S+SLG P+ GI++ ++GN G
Sbjct: 130 VADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEG 186
Query: 313 PNSSTLANEAPWMLTVGA 330
S + P ++ VGA
Sbjct: 187 APSPSYPAAYPEVIAVGA 204
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 29/127 (22%)
Query: 431 GTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS-------IVFKGTVIGKKSAPEVAV 483
G D+++ + +Y AG I A + +P+ S ++ G + S +A
Sbjct: 157 GPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI---DSNDNIAS 213
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+R +P++ PGV IL+ +P ++ + GT M+ PH+SG+
Sbjct: 214 FSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTCMATPHVSGVV 254
Query: 544 ALLKSAH 550
AL+++A+
Sbjct: 255 ALIQAAY 261
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 38/198 (19%)
Query: 147 IGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDG 206
+ VLD G+ HP + + + +GK + +C D +G
Sbjct: 31 VAVLDTGVDYDHPDLA-ANIAWCVSTLRGKVSTKLRDCA-----------------DQNG 72
Query: 207 HGTHTASTAAGNFVNGANLFGQANGT---------AAGMAPLAHLAIYKVCETDLGCPES 257
HGTH T A N + G A G A G + +AI + + LG P+
Sbjct: 73 HGTHVIGTIAA-LNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAI-GIEQAILG-PDG 129
Query: 258 IVNAAIDAAV-----EEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSG 312
+ + D + ++ +V+S+SLG P+ GI++ ++GN G
Sbjct: 130 VADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEG 186
Query: 313 PNSSTLANEAPWMLTVGA 330
S + P ++ VGA
Sbjct: 187 APSPSYPAAYPEVIAVGA 204
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 17/87 (19%)
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+ G N GIL PG IL A P +EE + ++GTSM+ P ++GI+
Sbjct: 256 FSNWGGNNTKEGIL-----APGEEILGAQPCTEEPVR--------LTGTSMAAPVMTGIS 302
Query: 544 ALLKSAHPDW----SPAAIKSAIMTTA 566
ALL S A+++A++ TA
Sbjct: 303 ALLMSLQVQQGKPVDAEAVRTALLKTA 329
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 18/152 (11%)
Query: 207 HGTHTASTAAGNFVNGANLFGQANGTAAGMAP------LAHLAIYKVCETDLGCPESIVN 260
H H ST + GQ + G+AP + A+ + D+ P ++
Sbjct: 127 HACHVTST----------IVGQEHSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLAR 176
Query: 261 AAIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQ-KGILVSCSAGNSGPNSSTLA 319
A ID A+E G +++ + P+ Q +L+ GN+ S L
Sbjct: 177 A-IDLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLP 235
Query: 320 NEAPWMLTVGASTIDRSIVALTQLGNQETYDG 351
P L VGA+ +D + + G T +G
Sbjct: 236 AVLPGTLAVGAAKVDGTPCHFSNWGGNNTKEG 267
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 17/87 (19%)
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+ G N GIL PG IL A P +EE + ++GTSM+ P ++GI+
Sbjct: 256 FSNWGGNNTKEGIL-----APGEEILGAQPCTEEPVR--------LTGTSMAAPVMTGIS 302
Query: 544 ALLKSAHPDW----SPAAIKSAIMTTA 566
ALL S A+++A++ TA
Sbjct: 303 ALLMSLQVQQGKPVDAEAVRTALLKTA 329
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 17/87 (19%)
Query: 484 FSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543
FS+ G N GIL PG IL A P +EE + ++GTSM+ P ++GI+
Sbjct: 238 FSNWGGNNTKEGIL-----APGEEILGAQPCTEEPVR--------LTGTSMAAPVMTGIS 284
Query: 544 ALLKSAHPDW----SPAAIKSAIMTTA 566
ALL S A+++A++ TA
Sbjct: 285 ALLMSLQVQQGKPVDAEAVRTALLKTA 311
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 18/152 (11%)
Query: 207 HGTHTASTAAGNFVNGANLFGQANGTAAGMAP------LAHLAIYKVCETDLGCPESIVN 260
H H ST + GQ + G+AP + A+ + D+ P ++
Sbjct: 109 HACHVTST----------IVGQEHSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLAR 158
Query: 261 AAIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQ-KGILVSCSAGNSGPNSSTLA 319
A ID A+E G +++ + P+ Q +L+ GN+ S L
Sbjct: 159 A-IDLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLP 217
Query: 320 NEAPWMLTVGASTIDRSIVALTQLGNQETYDG 351
P L VGA+ +D + + G T +G
Sbjct: 218 AVLPGTLAVGAAKVDGTPCHFSNWGGNNTKEG 249
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 522 TKSTFTMISGTSMSCPHLSGIAAL----LKSAHPDWSPAAIKSAIMTTADIVNLEGKPIM 577
T S + +GTS + PH++G AL LK + ++SP +IK AI TA +
Sbjct: 451 TXSKSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY------ 504
Query: 578 NHHLLPADLFAVGAGHVNPSKANDPGLVYEISHDDYVRY 616
D FA G G +N KA + + S D+ +R+
Sbjct: 505 ------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNXLRF 537
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 480 EVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENIT---NTKSTFTMISGTSMSC 536
VA FSSRGP G +KPD++ PG IL+A + + N S + GTS +
Sbjct: 201 HVAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYXGGTSXAT 258
Query: 537 PHLSGIAALLK 547
P ++G A L+
Sbjct: 259 PIVAGNVAQLR 269
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 33/194 (17%)
Query: 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP 201
G+G I+ V D G+ G +D M ++GK I A L ++
Sbjct: 21 GQGQIVAVADTGLDTGR---NDSSMHE---AFRGK------------ITALYALGRTNNA 62
Query: 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPE--SIV 259
D +GHGTH A + GN T GMAP A+L + ++ G S +
Sbjct: 63 NDTNGHGTHVAGSVLGN-----------GSTNKGMAPQANLVFQSIMDSGGGLGGLPSNL 111
Query: 260 NAAIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLA 319
A G + + S G+ + + + +AGN GPN T++
Sbjct: 112 QTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTIS 171
Query: 320 --NEAPWMLTVGAS 331
A +TVGA+
Sbjct: 172 APGTAKNAITVGAT 185
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALL 546
DI PG SI + W N ISGTSM+ PH++G+AA L
Sbjct: 201 DIFAPGTSITSTWIGGRTN---------TISGTSMATPHIAGLAAYL 238
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSA----HPDWSP 555
D+ PG IL+ ++ ++GTSM+ PH+SG+AAL+ SA + + +P
Sbjct: 245 DLAAPGQDILST--VDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTP 302
Query: 556 AAIKSAIMTT 565
A +K +++T
Sbjct: 303 AELKDVLVST 312
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSA----HPDWSP 555
D+ PG IL+ ++ ++GTSM+ PH+SG+AAL+ SA + + +P
Sbjct: 245 DLAAPGQDILST--VDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTP 302
Query: 556 AAIKSAIMTT 565
A +K +++T
Sbjct: 303 AELKDVLVST 312
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSA----HPDWSP 555
D+ PG IL+ ++ ++GTSM+ PH+SG+AAL+ SA + + +P
Sbjct: 245 DLAAPGQDILST--VDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTP 302
Query: 556 AAIKSAIMTT 565
A +K +++T
Sbjct: 303 AELKDVLVST 312
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 39/243 (16%)
Query: 121 THSPNFLGLHQNSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELE 180
+H N GL + W ++ + + VLD + HP F + P+ G+
Sbjct: 2 SHMTNIPGLKK---LWSETRGDPKICVAVLDGIVDQNHPCFIGADLTRLPSLVSGE---- 54
Query: 181 GANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLA 240
AN N + HGTH AS +FGQ + G+AP
Sbjct: 55 -ANANGSM----------------STHGTHVASI----------IFGQHDSPVTGIAPQC 87
Query: 241 HLAIYKV-CETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPXXXXXXXXXXXXXSQ 299
I V + L + ++ AI+ AV G +++++S G + Q
Sbjct: 88 RGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTDAGEADTWLEKAIQLCQ 147
Query: 300 K-GILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQP- 357
+ +L+ + GN G + P +L VGA V + G + Y + I P
Sbjct: 148 ENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQGKPVDFSNWG--DAYQKQGILAPG 205
Query: 358 KDF 360
KD
Sbjct: 206 KDI 208
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 498 KPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAH------P 551
K I+ PG IL A P +SGTS + P +SG+AALL S P
Sbjct: 198 KQGILAPGKDILGAKP---------NGGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKP 248
Query: 552 DWSPAAIKSAIMTTADIVN 570
D P +K+A++ +A N
Sbjct: 249 D--PQKVKNALLASATPCN 265
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 504 PGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSA 549
PG +IL+ + +S++ M +GTSM+ PH+SG+AAL+ SA
Sbjct: 250 PGTNILSTIDVGQAGPV--RSSYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 501 IIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSA 549
+ PG +IL+ + +S++ M +GTSM+ PH+SG+AAL+ SA
Sbjct: 247 LAAPGTNILSTIDVGQAGPV--RSSYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 528 MISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIM 577
+++GTS + P SG ALL SA+PD S ++ + +A V+ + +P+M
Sbjct: 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVM 380
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIK 559
D+ PG I +AW + ISGTSM+ PH++G+AAL + +P +
Sbjct: 196 DLFAPGSQIKSAW---------YDGGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLT 246
Query: 560 SAIMTTA 566
+ + A
Sbjct: 247 GLLNSRA 253
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 500 DIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALL 546
DI PG +IL+ W I T +T ISGTSM+ PH+ G+ A L
Sbjct: 203 DIFAPGSNILSTW------IGGTTNT---ISGTSMATPHIVGLGAYL 240
>pdb|2H6O|A Chain A, Epstein Barr Virus Major Envelope Glycoprotein
Length = 470
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 494 PGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAA 544
P + D P V++ A W + T+ K +T+ SGT C ++SG A
Sbjct: 334 PMVTSEDANSPNVTVTAFWAWPNNTETDFKCKWTLTSGTPSGCENISGAFA 384
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 14/155 (9%)
Query: 207 HGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESI-VNAAIDA 265
HGTH AS +FGQ + G+AP I + D + + I+
Sbjct: 61 HGTHVASI----------IFGQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIER 110
Query: 266 AVEEGVDVLSISLGSPS-LPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANEAPW 324
AV G +++IS G + Q +L+ +AGN+G + + P
Sbjct: 111 AVNAGAHIINISGGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPA 170
Query: 325 MLTVGASTIDRSIVALTQLGNQETYDGETIFQPKD 359
+L VGA + + G+ TY+ + I P +
Sbjct: 171 VLAVGAMDDHGHPLDFSNWGS--TYEQQGILAPGE 203
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 14/155 (9%)
Query: 207 HGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESI-VNAAIDA 265
HGTH AS +FGQ + G+AP I + D + + I+
Sbjct: 70 HGTHVASI----------IFGQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIER 119
Query: 266 AVEEGVDVLSISLGSPS-LPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANEAPW 324
AV G +++IS G + Q +L+ +AGN+G + + P
Sbjct: 120 AVNAGAHIINISGGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPA 179
Query: 325 MLTVGASTIDRSIVALTQLGNQETYDGETIFQPKD 359
+L VGA + + G+ TY+ + I P +
Sbjct: 180 VLAVGAMDDHGHPLDFSNWGS--TYEQQGILAPGE 212
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 14/155 (9%)
Query: 207 HGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESI-VNAAIDA 265
HGTH AS +FGQ + G+AP I + D + + I+
Sbjct: 51 HGTHVASI----------IFGQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIER 100
Query: 266 AVEEGVDVLSISLGSPS-LPXXXXXXXXXXXXXSQKGILVSCSAGNSGPNSSTLANEAPW 324
AV G +++IS G + Q +L+ +AGN+G + + P
Sbjct: 101 AVNAGAHIINISGGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPA 160
Query: 325 MLTVGASTIDRSIVALTQLGNQETYDGETIFQPKD 359
+L VGA + + G+ TY+ + I P +
Sbjct: 161 VLAVGAMDDHGHPLDFSNWGS--TYEQQGILAPGE 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,819,462
Number of Sequences: 62578
Number of extensions: 983139
Number of successful extensions: 2061
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1649
Number of HSP's gapped (non-prelim): 240
length of query: 745
length of database: 14,973,337
effective HSP length: 106
effective length of query: 639
effective length of database: 8,340,069
effective search space: 5329304091
effective search space used: 5329304091
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)