Query 042259
Match_columns 745
No_of_seqs 445 out of 3196
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 5.5E-51 1.2E-55 435.1 29.3 288 116-567 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 3.7E-50 8.1E-55 444.2 22.0 298 125-606 294-618 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 1.4E-49 3.1E-54 414.1 23.5 270 139-601 1-274 (275)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 1.2E-48 2.6E-53 404.4 24.6 242 136-569 1-253 (255)
5 cd07497 Peptidases_S8_14 Pepti 100.0 2.2E-48 4.9E-53 411.0 24.6 285 142-566 1-311 (311)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 7E-48 1.5E-52 418.9 27.8 309 134-601 1-346 (346)
7 cd07478 Peptidases_S8_CspA-lik 100.0 1.9E-47 4.1E-52 424.1 29.0 398 140-592 1-455 (455)
8 cd07489 Peptidases_S8_5 Peptid 100.0 3.4E-47 7.3E-52 407.1 26.4 285 133-605 3-302 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 2.6E-46 5.5E-51 388.7 25.0 248 135-572 2-255 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 1.2E-45 2.7E-50 392.6 29.1 277 142-599 1-295 (295)
11 cd05561 Peptidases_S8_4 Peptid 100.0 1.2E-45 2.6E-50 378.6 23.3 235 145-592 1-239 (239)
12 KOG1153 Subtilisin-related pro 100.0 4.8E-46 1E-50 383.0 15.3 334 29-567 77-461 (501)
13 cd07493 Peptidases_S8_9 Peptid 100.0 1.1E-44 2.4E-49 377.8 25.1 242 144-567 1-261 (261)
14 cd04857 Peptidases_S8_Tripepti 100.0 4.4E-44 9.5E-49 384.8 27.8 221 202-569 182-412 (412)
15 cd07481 Peptidases_S8_Bacillop 100.0 2.9E-44 6.2E-49 375.2 25.5 247 142-567 1-264 (264)
16 cd07483 Peptidases_S8_Subtilis 100.0 3.3E-44 7.2E-49 378.8 24.9 251 143-567 1-291 (291)
17 cd07487 Peptidases_S8_1 Peptid 100.0 1.4E-43 3E-48 370.8 26.1 253 142-567 1-264 (264)
18 cd07485 Peptidases_S8_Fervidol 100.0 1.9E-43 4.2E-48 370.8 25.4 260 134-565 1-273 (273)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 6.8E-43 1.5E-47 363.3 24.9 232 135-568 17-255 (255)
20 cd07484 Peptidases_S8_Thermita 100.0 1.5E-42 3.2E-47 361.9 25.4 242 132-569 18-259 (260)
21 cd04847 Peptidases_S8_Subtilis 100.0 7.6E-43 1.7E-47 369.7 21.1 258 146-567 2-291 (291)
22 cd07490 Peptidases_S8_6 Peptid 100.0 5.7E-42 1.2E-46 356.4 24.9 249 144-567 1-254 (254)
23 cd07496 Peptidases_S8_13 Pepti 100.0 6E-42 1.3E-46 361.8 24.7 257 144-565 1-285 (285)
24 cd07494 Peptidases_S8_10 Pepti 100.0 7.1E-42 1.5E-46 360.8 25.1 249 132-571 10-287 (298)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 8.4E-42 1.8E-46 362.8 25.5 277 138-567 2-293 (293)
26 cd07498 Peptidases_S8_15 Pepti 100.0 1.4E-41 3.1E-46 350.6 25.2 240 145-565 1-242 (242)
27 cd07480 Peptidases_S8_12 Pepti 100.0 2.5E-41 5.5E-46 358.8 25.3 265 137-597 2-296 (297)
28 cd07477 Peptidases_S8_Subtilis 100.0 1.5E-40 3.2E-45 340.2 24.3 225 144-565 1-229 (229)
29 cd04843 Peptidases_S8_11 Pepti 100.0 1.1E-40 2.3E-45 347.8 21.9 243 133-567 5-277 (277)
30 cd07473 Peptidases_S8_Subtilis 100.0 4.1E-40 8.8E-45 343.4 26.1 246 143-567 2-259 (259)
31 cd07491 Peptidases_S8_7 Peptid 100.0 1.3E-40 2.9E-45 341.6 20.5 209 142-549 2-229 (247)
32 PF00082 Peptidase_S8: Subtila 100.0 7.7E-41 1.7E-45 353.5 16.1 271 146-601 1-282 (282)
33 cd07492 Peptidases_S8_8 Peptid 100.0 3.3E-39 7.1E-44 328.5 22.8 222 144-567 1-222 (222)
34 cd04059 Peptidases_S8_Protein_ 100.0 9.5E-40 2.1E-44 347.7 18.7 246 132-567 28-297 (297)
35 cd07482 Peptidases_S8_Lantibio 100.0 5.6E-39 1.2E-43 341.3 23.4 249 144-565 1-294 (294)
36 cd04848 Peptidases_S8_Autotran 100.0 4.6E-38 9.9E-43 329.4 22.7 242 141-567 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 1.2E-37 2.7E-42 328.6 24.2 368 29-606 46-470 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 1.7E-35 3.8E-40 325.5 23.7 238 205-601 310-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 6E-34 1.3E-38 291.2 16.7 195 201-566 33-247 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 6.5E-31 1.4E-35 269.9 24.5 231 145-565 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 9.7E-24 2.1E-28 240.7 22.2 272 132-601 129-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 1.4E-22 3.1E-27 204.1 9.0 167 132-330 150-335 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 4.7E-17 1E-21 176.9 14.7 100 233-336 83-199 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.3 2.4E-11 5.3E-16 114.2 11.5 118 361-491 24-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.3 7E-11 1.5E-15 108.8 12.8 121 341-465 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.9 3.9E-09 8.5E-14 89.2 6.2 82 34-119 1-82 (82)
47 KOG3525 Subtilisin-like propro 98.7 2.8E-08 6.2E-13 109.2 9.7 153 132-317 22-190 (431)
48 cd02129 PA_hSPPL_like PA_hSPPL 98.7 6.7E-08 1.4E-12 86.6 10.2 92 362-458 19-114 (120)
49 cd04816 PA_SaNapH_like PA_SaNa 98.7 1.8E-07 4E-12 85.4 12.1 95 364-461 18-117 (122)
50 cd02127 PA_hPAP21_like PA_hPAP 98.7 1.1E-07 2.4E-12 85.8 9.7 88 377-466 21-116 (118)
51 cd02122 PA_GRAIL_like PA _GRAI 98.7 1E-07 2.2E-12 88.4 9.5 89 376-465 43-137 (138)
52 PF02225 PA: PA domain; Inter 98.6 8.5E-08 1.8E-12 84.4 6.5 79 377-456 19-101 (101)
53 cd02126 PA_EDEM3_like PA_EDEM3 98.6 2.7E-07 5.8E-12 84.6 9.1 84 377-462 27-122 (126)
54 cd04818 PA_subtilisin_1 PA_sub 98.6 3.4E-07 7.5E-12 83.1 9.4 86 376-463 26-115 (118)
55 PF06280 DUF1034: Fn3-like dom 98.5 9.5E-07 2.1E-11 79.4 11.8 82 659-741 7-112 (112)
56 cd02125 PA_VSR PA_VSR: Proteas 98.5 7E-07 1.5E-11 81.6 10.4 87 377-464 22-125 (127)
57 cd02130 PA_ScAPY_like PA_ScAPY 98.5 4.6E-07 9.9E-12 82.8 9.2 85 378-464 32-120 (122)
58 cd00538 PA PA: Protease-associ 98.5 5.1E-07 1.1E-11 82.9 8.8 84 377-461 30-121 (126)
59 COG4934 Predicted protease [Po 98.5 1.7E-06 3.6E-11 102.4 15.1 161 135-330 220-395 (1174)
60 cd02124 PA_PoS1_like PA_PoS1_l 98.5 1.9E-06 4.1E-11 79.0 12.1 95 365-461 28-124 (129)
61 cd02132 PA_GO-like PA_GO-like: 98.4 8.9E-07 1.9E-11 82.6 9.1 83 377-463 48-136 (139)
62 cd04813 PA_1 PA_1: Protease-as 98.4 1.1E-06 2.3E-11 79.2 8.5 80 376-458 26-111 (117)
63 cd04817 PA_VapT_like PA_VapT_l 98.4 9.6E-07 2.1E-11 81.5 8.4 74 384-458 49-133 (139)
64 cd02123 PA_C_RZF_like PA_C-RZF 98.3 2.4E-06 5.2E-11 81.0 9.0 84 377-461 50-142 (153)
65 cd04819 PA_2 PA_2: Protease-as 97.9 7.3E-05 1.6E-09 68.7 10.1 91 362-460 22-121 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.4 0.00047 1E-08 63.9 7.8 77 386-463 34-131 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 96.8 0.0064 1.4E-07 58.8 8.6 72 387-459 51-156 (183)
68 PF14874 PapD-like: Flagellar- 96.6 0.071 1.5E-06 46.7 13.7 82 660-744 20-101 (102)
69 cd04814 PA_M28_1 PA_M28_1: Pro 96.3 0.0084 1.8E-07 55.7 6.2 64 362-427 19-100 (142)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 96.2 0.011 2.3E-07 54.6 6.0 63 363-427 22-96 (137)
71 KOG2442 Uncharacterized conser 95.9 0.027 5.7E-07 61.0 8.3 80 386-466 90-175 (541)
72 cd04822 PA_M28_1_3 PA_M28_1_3: 95.7 0.023 4.9E-07 53.4 6.2 63 364-428 21-101 (151)
73 cd02121 PA_GCPII_like PA_GCPII 95.3 0.047 1E-06 54.7 7.0 55 364-426 46-105 (220)
74 PF10633 NPCBM_assoc: NPCBM-as 94.9 0.11 2.4E-06 43.1 7.2 59 660-718 5-64 (78)
75 KOG3920 Uncharacterized conser 94.7 0.038 8.3E-07 50.6 4.1 101 364-470 65-175 (193)
76 cd02131 PA_hNAALADL2_like PA_h 94.0 0.066 1.4E-06 49.8 4.1 38 388-426 37-74 (153)
77 PF11614 FixG_C: IG-like fold 93.9 0.99 2.2E-05 40.7 11.8 57 661-718 32-88 (118)
78 PF06030 DUF916: Bacterial pro 92.5 1.2 2.6E-05 40.4 9.8 77 652-730 18-119 (121)
79 KOG4628 Predicted E3 ubiquitin 90.7 0.57 1.2E-05 49.9 6.6 80 378-458 63-149 (348)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 87.7 2.2 4.7E-05 40.6 7.5 62 363-426 22-102 (157)
81 PF00345 PapD_N: Pili and flag 84.1 9.8 0.00021 34.3 9.8 69 660-730 14-89 (122)
82 COG1470 Predicted membrane pro 82.3 13 0.00028 41.0 11.1 71 660-730 397-468 (513)
83 COG1470 Predicted membrane pro 80.3 22 0.00047 39.3 12.0 70 661-731 285-360 (513)
84 TIGR02745 ccoG_rdxA_fixG cytoc 78.1 8.5 0.00018 43.0 8.5 56 661-717 347-402 (434)
85 PF00635 Motile_Sperm: MSP (Ma 77.5 12 0.00027 32.6 8.0 53 661-716 19-71 (109)
86 PF07718 Coatamer_beta_C: Coat 68.6 45 0.00098 30.9 9.3 68 661-730 70-138 (140)
87 PF07705 CARDB: CARDB; InterP 59.1 72 0.0016 27.0 8.7 53 659-715 18-72 (101)
88 PF00927 Transglut_C: Transglu 54.3 64 0.0014 28.2 7.6 57 659-717 14-79 (107)
89 smart00635 BID_2 Bacterial Ig- 51.6 48 0.001 27.4 6.0 39 689-732 4-42 (81)
90 PF07610 DUF1573: Protein of u 51.0 44 0.00095 24.3 5.0 45 665-712 1-45 (45)
91 PF12690 BsuPI: Intracellular 49.9 63 0.0014 27.0 6.4 20 697-717 54-73 (82)
92 PRK15098 beta-D-glucoside gluc 45.2 34 0.00073 41.5 5.7 55 660-717 667-730 (765)
93 PLN03080 Probable beta-xylosid 44.0 46 0.00099 40.4 6.6 53 661-714 685-744 (779)
94 PRK13203 ureB urease subunit b 41.7 69 0.0015 27.8 5.4 16 660-675 18-33 (102)
95 PF00699 Urease_beta: Urease b 41.0 85 0.0018 27.1 5.8 17 659-675 16-32 (100)
96 cd00407 Urease_beta Urease bet 41.0 77 0.0017 27.5 5.5 16 660-675 18-33 (101)
97 TIGR00192 urease_beta urease, 37.6 88 0.0019 27.1 5.4 16 660-675 18-33 (101)
98 PF02845 CUE: CUE domain; Int 36.9 32 0.0007 24.5 2.4 23 544-566 6-28 (42)
99 PF08260 Kinin: Insect kinin p 35.0 18 0.00039 16.3 0.4 6 483-488 3-8 (8)
100 PRK13205 ureB urease subunit b 33.2 1.2E+02 0.0025 28.4 5.7 16 660-675 18-33 (162)
101 PF05506 DUF756: Domain of unk 32.6 3E+02 0.0065 23.1 8.5 48 660-712 18-65 (89)
102 PRK13202 ureB urease subunit b 32.2 1.2E+02 0.0027 26.4 5.4 14 662-675 21-34 (104)
103 PRK13201 ureB urease subunit b 30.8 1.2E+02 0.0025 27.7 5.3 16 660-675 18-33 (136)
104 PF11611 DUF4352: Domain of un 28.9 2.4E+02 0.0053 24.8 7.4 58 661-719 37-106 (123)
105 PRK15308 putative fimbrial pro 28.5 3.4E+02 0.0074 27.6 8.9 54 661-715 32-101 (234)
106 PRK13204 ureB urease subunit b 28.0 1.3E+02 0.0029 28.0 5.3 17 659-675 40-56 (159)
107 PF08821 CGGC: CGGC domain; I 27.3 3.2E+02 0.0069 24.1 7.5 68 233-306 30-104 (107)
108 PRK15019 CsdA-binding activato 27.3 59 0.0013 30.5 3.0 33 527-560 77-109 (147)
109 TIGR03391 FeS_syn_CsdE cystein 26.0 65 0.0014 29.9 3.0 34 527-561 72-105 (138)
110 COG1570 XseA Exonuclease VII, 25.6 2.1E+02 0.0045 31.9 7.2 74 235-312 158-236 (440)
111 PF13940 Ldr_toxin: Toxin Ldr, 25.4 55 0.0012 22.1 1.7 13 534-546 14-26 (35)
112 PRK13198 ureB urease subunit b 25.3 1.8E+02 0.0038 27.2 5.5 17 659-675 45-61 (158)
113 PF02601 Exonuc_VII_L: Exonucl 25.1 2.1E+02 0.0046 30.5 7.3 73 236-312 38-118 (319)
114 smart00546 CUE Domain that may 24.5 1E+02 0.0022 21.9 3.3 25 542-566 5-29 (43)
115 PRK15233 putative fimbrial cha 24.0 7.4E+02 0.016 25.5 10.5 59 659-720 53-116 (246)
116 PF13598 DUF4139: Domain of un 23.0 3.3E+02 0.0071 28.9 8.3 24 722-745 288-316 (317)
117 COG0832 UreB Urea amidohydrola 22.8 2.5E+02 0.0055 24.3 5.6 15 661-675 19-33 (106)
118 PRK09296 cysteine desufuration 22.7 82 0.0018 29.2 3.0 33 527-560 67-99 (138)
119 PRK09918 putative fimbrial cha 22.6 4.3E+02 0.0093 26.8 8.6 55 657-714 35-94 (230)
120 PF06051 DUF928: Domain of Unk 22.1 7.5E+02 0.016 24.2 9.9 82 648-731 33-120 (189)
121 PF04255 DUF433: Protein of un 21.7 81 0.0018 24.1 2.4 37 527-563 12-54 (56)
122 COG2166 sufE Cysteine desulfur 21.2 86 0.0019 29.2 2.8 32 528-560 73-104 (144)
123 PF02657 SufE: Fe-S metabolism 20.9 97 0.0021 28.2 3.1 33 528-561 59-91 (125)
124 PF01345 DUF11: Domain of unkn 20.9 2.1E+02 0.0046 23.0 4.9 31 659-689 40-71 (76)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.5e-51 Score=435.12 Aligned_cols=288 Identities=56% Similarity=0.849 Sum_probs=247.4
Q ss_pred cCCCCCCCCCccCccCCCC--CccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCC----cccCccee
Q 042259 116 LEPQTTHSPNFLGLHQNSG--FWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEG----ANCNNKII 189 (745)
Q Consensus 116 ~~~~~~~s~~~~g~~~~~~--~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~----~~~n~ki~ 189 (745)
++++++++++|+++..... +|..+++|+||+|||||||||++||+|.++...++...|++.|..+. ..+++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4688899999999887444 47789999999999999999999999999988999999999998876 34899999
Q ss_pred eeeeCCCCC------------CCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHH
Q 042259 190 GARNFLNKS------------EPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPES 257 (745)
Q Consensus 190 ~~~~~~~~~------------~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~ 257 (745)
+.++|.++. .++.|..||||||||||||+...+....+...+.+.||||+|+|+.+|+++....+..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 999987642 34578899999999999999776655555566667999999999999999933558899
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccce
Q 042259 258 IVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSI 337 (745)
Q Consensus 258 ~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~ 337 (745)
++++|+++|++++++|||||||......+.+.+..+++.+.++|+++|+||||+|+.....++..||+++||+.+
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~----- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST----- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-----
Confidence 999999999999999999999987645566777878888899999999999999988888888999999999830
Q ss_pred EEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCc
Q 042259 338 VALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGG 417 (745)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga 417 (745)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCc
Q 042259 418 AAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGIL 497 (745)
Q Consensus 418 ~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~ 497 (745)
+
T Consensus 236 -------------------------------------------------------------------------------~ 236 (307)
T cd04852 236 -------------------------------------------------------------------------------L 236 (307)
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred cCceEeCCccEEeccCCCC-ccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 498 KPDIIGPGVSILAAWPFSE-ENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 498 KPDi~APG~~I~sa~~~~~-~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
||||+|||.+|++++.... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 237 ~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 237 KPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 7799999999999987422 112333478999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=3.7e-50 Score=444.19 Aligned_cols=298 Identities=20% Similarity=0.234 Sum_probs=216.5
Q ss_pred CccCccC--CCCCcc--CCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcc---eeeeeeCCCC
Q 042259 125 NFLGLHQ--NSGFWK--DSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNK---IIGARNFLNK 197 (745)
Q Consensus 125 ~~~g~~~--~~~~~~--~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~k---i~~~~~~~~~ 197 (745)
..|+++. ...+|. .+.+|+||+|||||||||++||||.++-...+. ...|.... ...++. -+.+++|.++
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~-el~Grdgi--DdD~nG~vdd~~G~nfVd~ 370 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVK-ELHGRKGI--DDDNNGNVDDEYGANFVNN 370 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccc-cccCcccc--ccccCCcccccccccccCC
Confidence 3466654 445665 456899999999999999999999864211000 00010000 001111 1345778776
Q ss_pred CCCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEE
Q 042259 198 SEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSI 276 (745)
Q Consensus 198 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~ 276 (745)
..++.|+.||||||||||||...++ .| +.||||+|+|+++|+++ ..+ +..+++++||+||++.|++||||
T Consensus 371 ~~~P~D~~GHGTHVAGIIAA~gnN~-------~G-i~GVAP~AkLi~vKVld-~~G~G~~sdI~~AI~yA~~~GA~VINm 441 (639)
T PTZ00262 371 DGGPMDDNYHGTHVSGIISAIGNNN-------IG-IVGVDKRSKLIICKALD-SHKLGRLGDMFKCFDYCISREAHMING 441 (639)
T ss_pred CCCCCCCCCcchHHHHHHhccccCC-------Cc-eeeeecccccceEEEec-CCCCccHHHHHHHHHHHHHCCCCEEEe
Confidence 6778899999999999999975321 22 57999999999999998 555 78899999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCC--------------ccc----CCCceEEEeecccccceE
Q 042259 277 SLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSST--------------LAN----EAPWMLTVGASTIDRSIV 338 (745)
Q Consensus 277 S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~vitVga~~~~~~~~ 338 (745)
|||+.. +...+..++.+|.++|+++|+||||+|..... ++. ..+++|+|||...+.
T Consensus 442 SlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~--- 515 (639)
T PTZ00262 442 SFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK--- 515 (639)
T ss_pred ccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC---
Confidence 999753 23455666678899999999999999865321 221 235666666632100
Q ss_pred EEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCce
Q 042259 339 ALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGA 418 (745)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~ 418 (745)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCcc
Q 042259 419 AMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILK 498 (745)
Q Consensus 419 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~K 498 (745)
......+.||++|. .+
T Consensus 516 ---------------------------------------------------------~~~~s~s~~Snyg~-------~~ 531 (639)
T PTZ00262 516 ---------------------------------------------------------NNQYSLSPNSFYSA-------KY 531 (639)
T ss_pred ---------------------------------------------------------CCcccccccccCCC-------Cc
Confidence 00012345666652 23
Q ss_pred CceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccC
Q 042259 499 PDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMN 578 (745)
Q Consensus 499 PDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~ 578 (745)
+||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|++.||+++|++||.+++..
T Consensus 532 VDIaAPG~dI~St~p~---------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~------ 596 (639)
T PTZ00262 532 CQLAAPGTNIYSTFPK---------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL------ 596 (639)
T ss_pred ceEEeCCCCeeeccCC---------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC------
Confidence 4999999999999987 7899999999999999999999999999999999999999999876321
Q ss_pred CCCCCCCCcccCC-CCCCccCCCCCCccc
Q 042259 579 HHLLPADLFAVGA-GHVNPSKANDPGLVY 606 (745)
Q Consensus 579 ~~~~~~~~~~~G~-G~vn~~~A~~~~lv~ 606 (745)
+..+|| |+||+++|++.++.+
T Consensus 597 -------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred -------CCccccCcEEcHHHHHHHHHhc
Confidence 122333 899999999865544
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.4e-49 Score=414.13 Aligned_cols=270 Identities=26% Similarity=0.266 Sum_probs=204.3
Q ss_pred CCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhccc
Q 042259 139 SNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGN 218 (745)
Q Consensus 139 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~ 218 (745)
+++|+||+|+|||||||..||++.+...+..+ +...+........|..+|||||||||+
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~-------------------~~~~~~~~~~~~~d~~gHGT~vAgii~-- 59 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLP-------------------GNVNVLGDLDGGSGGGDEGRAMLEIIH-- 59 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCC-------------------cceeeccccCCCCCCCchHHHHHHHHh--
Confidence 57999999999999999998865432111111 111111111345678899999999995
Q ss_pred ccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCC-hhhHHHHHHHHH
Q 042259 219 FVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPF-FADAMATAAFTA 297 (745)
Q Consensus 219 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~-~~~~~~~a~~~a 297 (745)
||||+|+|+.+|+.. ..+++++||+|++++|++|||||||....+. ....+..++.++
T Consensus 60 ----------------GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a 118 (275)
T cd05562 60 ----------------DIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEV 118 (275)
T ss_pred ----------------ccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHHH
Confidence 899999999998755 4788999999999999999999999865433 234566666677
Q ss_pred hcC-CcEEEEccCCCCCCC-CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCC
Q 042259 298 SQK-GILVSCSAGNSGPNS-STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNS 375 (745)
Q Consensus 298 ~~~-Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (745)
.++ |+++|+||||+|... ...++..|++|+|||.+.+...... .
T Consensus 119 ~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~-----------------------------s----- 164 (275)
T cd05562 119 VASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFG-----------------------------S----- 164 (275)
T ss_pred HHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccc-----------------------------c-----
Confidence 776 999999999999864 3456889999999996532211000 0
Q ss_pred CCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHH
Q 042259 376 SAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAY 455 (745)
Q Consensus 376 ~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 455 (745)
| .+ .
T Consensus 165 ----~-------------------~~--------------------------~--------------------------- 168 (275)
T cd05562 165 ----D-------------------PA--------------------------P--------------------------- 168 (275)
T ss_pred ----c-------------------cc--------------------------c---------------------------
Confidence 0 00 0
Q ss_pred HhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCc-cEEeccCCCCccCCCcccceeeeccccc
Q 042259 456 INSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGV-SILAAWPFSEENITNTKSTFTMISGTSM 534 (745)
Q Consensus 456 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~-~I~sa~~~~~~~~~~~~~~y~~~sGTSm 534 (745)
.......+.||++||+. ++++||||+|||+ ++.+++.. +.|..++||||
T Consensus 169 -------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~---------~~~~~~sGTS~ 218 (275)
T cd05562 169 -------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG---------DGPPNFFGTSA 218 (275)
T ss_pred -------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC---------CceeecccchH
Confidence 00011345688899987 6789999999975 45555554 68999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 535 SCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 535 AaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
|||||||++|||+|++|+|++++||++|++||+++.. ++.+..||||+||+.+|++
T Consensus 219 AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-----------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 219 AAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE-----------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------CCCCCCcCcCcccHHHHhh
Confidence 9999999999999999999999999999999987742 2456789999999999986
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.2e-48 Score=404.40 Aligned_cols=242 Identities=29% Similarity=0.452 Sum_probs=198.3
Q ss_pred ccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhh
Q 042259 136 WKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTA 215 (745)
Q Consensus 136 ~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGii 215 (745)
|+.+++|+||+|||||||||.+||+|.+.. ...+|... ....|..||||||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~------------------------~~~~~~~~-~~~~d~~gHGT~VAGiI 55 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK------------------------ERTNWTNE-KTLDDGLGHGTFVAGVI 55 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc------------------------cccccCCC-CCCCCCCCcHHHHHHHH
Confidence 899999999999999999999999997420 11223222 34567889999999999
Q ss_pred cccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHH
Q 042259 216 AGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAA 294 (745)
Q Consensus 216 ag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~ 294 (745)
+|+.. .+.||||+|+|+.+|++. +.+ ...+.++++++||+++++||||||||... +....+..++
T Consensus 56 a~~~~-----------~~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~~~~~~~~~~ 121 (255)
T cd07479 56 ASSRE-----------QCLGFAPDAEIYIFRVFT-NNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--FMDKPFVDKV 121 (255)
T ss_pred HccCC-----------CceeECCCCEEEEEEeec-CCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC--CCCcHHHHHH
Confidence 98741 147999999999999998 554 66778999999999999999999999753 2234455556
Q ss_pred HHHhcCCcEEEEccCCCCCCCC--CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCC
Q 042259 295 FTASQKGILVSCSAGNSGPNSS--TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGV 372 (745)
Q Consensus 295 ~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (745)
.++.++|++||+||||+|+... ..+...+++|+||+..
T Consensus 122 ~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~---------------------------------------- 161 (255)
T cd07479 122 WELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID---------------------------------------- 161 (255)
T ss_pred HHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec----------------------------------------
Confidence 6788999999999999997543 3466778899999842
Q ss_pred CCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHH
Q 042259 373 KNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERI 452 (745)
Q Consensus 373 ~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l 452 (745)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCC----CCCCCccCceEeCCccEEeccCCCCccCCCcccceee
Q 042259 453 KAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNT----ASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTM 528 (745)
Q Consensus 453 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~----~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~ 528 (745)
..+.++.|||+|++. ...+++||||+|||.+|+++... +.|..
T Consensus 162 ------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~---------~~~~~ 208 (255)
T cd07479 162 ------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK---------GGCRA 208 (255)
T ss_pred ------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC---------CCeEE
Confidence 122678999999652 12578899999999999998776 67899
Q ss_pred eccccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHhcccccc
Q 042259 529 ISGTSMSCPHLSGIAALLKSAHP----DWSPAAIKSAIMTTADIV 569 (745)
Q Consensus 529 ~sGTSmAaP~VAG~aALl~q~~p----~~s~~~ik~~L~~TA~~~ 569 (745)
++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 209 ~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 209 LSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred eccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 99999999999999999999998 789999999999999976
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-48 Score=411.05 Aligned_cols=285 Identities=27% Similarity=0.320 Sum_probs=191.9
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC-CCCCCCCCChhhhhhhhccccc
Q 042259 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS-EPPIDNDGHGTHTASTAAGNFV 220 (745)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~-~~~~d~~gHGThVAGiiag~~~ 220 (745)
|+||+|+|||||||.+||||.++... .|+..++ ....+..+.++..+. ..+.|++||||||||||||...
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d-----~~~~~~~g~d~~~~~~~~~~D~~gHGThvAGiiag~~~ 71 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFD-----YKAYLLPGMDKWGGFYVIMYDFFSHGTSCASVAAGRGK 71 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccC-----cCCCccCCcCCCCCccCCCCCccccchhHHHHHhccCc
Confidence 89999999999999999999754211 1111111 011233344444332 3467899999999999999864
Q ss_pred CCCcccCC-CCcceeeeccCceEEeeecccCCCCCCHHHHHH-------HHHHH--HhCCCcEEEEccCCCCCCCh----
Q 042259 221 NGANLFGQ-ANGTAAGMAPLAHLAIYKVCETDLGCPESIVNA-------AIDAA--VEEGVDVLSISLGSPSLPFF---- 286 (745)
Q Consensus 221 ~~~~~~g~-~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~-------ai~~a--~~~g~dVIn~S~G~~~~~~~---- 286 (745)
...+..++ ....+.||||+|+|+.+|++...+......+.. +++|. .+++++|||||||.....+.
T Consensus 72 ~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~~ 151 (311)
T cd07497 72 MEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAP 151 (311)
T ss_pred ccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCcccccc
Confidence 32221111 122368999999999999997222232222332 34443 36799999999998542211
Q ss_pred -hhHHHHHHHH-HhcCCcEEEEccCCCCCCCC--CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCC
Q 042259 287 -ADAMATAAFT-ASQKGILVSCSAGNSGPNSS--TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPS 362 (745)
Q Consensus 287 -~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (745)
.+........ +.++|+++|+||||+|+... ..++.++++|+|||++.....+.
T Consensus 152 g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~----------------------- 208 (311)
T cd07497 152 GLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF----------------------- 208 (311)
T ss_pred CcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch-----------------------
Confidence 1112222222 23899999999999998643 45678899999999642110000
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEE
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAV 442 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 442 (745)
+.. ..
T Consensus 209 --~~~---------------------------~~---------------------------------------------- 213 (311)
T cd07497 209 --YLF---------------------------GY---------------------------------------------- 213 (311)
T ss_pred --hhh---------------------------cc----------------------------------------------
Confidence 000 00
Q ss_pred EEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCc-cCCC
Q 042259 443 YVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEE-NITN 521 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~-~~~~ 521 (745)
.....+.++.||||||+. ++++||||+|||++|+++.+.... ....
T Consensus 214 -------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~~~~ 260 (311)
T cd07497 214 -------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGGALD 260 (311)
T ss_pred -------------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCcccC
Confidence 011234789999999998 799999999999999998765321 1111
Q ss_pred cccceeeeccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHhccc
Q 042259 522 TKSTFTMISGTSMSCPHLSGIAALLKSAHP------DWSPAAIKSAIMTTA 566 (745)
Q Consensus 522 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~~s~~~ik~~L~~TA 566 (745)
....|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 261 ~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 261 GNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 224789999999999999999999999876 589999999999997
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=7e-48 Score=418.93 Aligned_cols=309 Identities=29% Similarity=0.382 Sum_probs=235.6
Q ss_pred CCccCCC-CCCccEEEEecCCCCCCCCCCCCCCCCCCCC-----ccccccccCC-cccCcceeeeeeCCCCCCCCC---C
Q 042259 134 GFWKDSN-LGKGVIIGVLDMGITPGHPSFSDEGMPPPPA-----KWKGKCELEG-ANCNNKIIGARNFLNKSEPPI---D 203 (745)
Q Consensus 134 ~~~~~~~-~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~-----~~~~~~~~~~-~~~n~ki~~~~~~~~~~~~~~---d 203 (745)
++|+++. +|+||+|+|||||||++||+|.+....+... .+...+..+. .+.+.+++.+++|.+...... +
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 3788887 9999999999999999999999764443211 2222222222 567889999999987654443 7
Q ss_pred CCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccC--CCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 042259 204 NDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCET--DLGCPESIVNAAIDAAVEEGVDVLSISLGSP 281 (745)
Q Consensus 204 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~--~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~ 281 (745)
..+|||||||||+|...+.. ....+.||||+|+|+.+|++.. ........++++++++++.+++|||||||..
T Consensus 81 ~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 155 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST 155 (346)
T ss_pred CCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 88999999999999864321 1223689999999999999972 3347788899999999999999999999987
Q ss_pred CCC-ChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCc----------------ccCCCceEEEeecccccceEEEEEeC
Q 042259 282 SLP-FFADAMATAAFTASQKGILVSCSAGNSGPNSSTL----------------ANEAPWMLTVGASTIDRSIVALTQLG 344 (745)
Q Consensus 282 ~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~p~vitVga~~~~~~~~~~~~~~ 344 (745)
... .....+..++.++.++|+++|+||||+|...... +...+++|+||+....
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~---------- 225 (346)
T cd07475 156 AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK---------- 225 (346)
T ss_pred CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc----------
Confidence 532 4445666777788899999999999998654321 2234455555553100
Q ss_pred CCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEec
Q 042259 345 NQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMN 424 (745)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n 424 (745)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeC
Q 042259 425 DELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGP 504 (745)
Q Consensus 425 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~AP 504 (745)
......+.++.||+|||+. ++++||||+||
T Consensus 226 ------------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi~ap 255 (346)
T cd07475 226 ------------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDITAP 255 (346)
T ss_pred ------------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeEEeC
Confidence 0012234788999999998 78999999999
Q ss_pred CccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHhcccccccCCCCcc
Q 042259 505 GVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSA----HPDWSPAA----IKSAIMTTADIVNLEGKPI 576 (745)
Q Consensus 505 G~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~~s~~~----ik~~L~~TA~~~~~~g~~~ 576 (745)
|.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+....
T Consensus 256 G~~i~s~~~~---------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~---- 322 (346)
T cd07475 256 GGNIYSTVND---------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS---- 322 (346)
T ss_pred CCCeEEecCC---------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc----
Confidence 9999999877 78999999999999999999999997 78999876 788999999852211
Q ss_pred cCCCCCCCCCcccCCCCCCccCCCC
Q 042259 577 MNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 577 ~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
...+.++.+..+|+|+||+++||+
T Consensus 323 -~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 323 -EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred -CCCCccCCccccCcchhcHHHhhC
Confidence 112456778899999999999985
No 7
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.9e-47 Score=424.11 Aligned_cols=398 Identities=25% Similarity=0.269 Sum_probs=240.6
Q ss_pred CCCCccEEEEecCCCCCCCCCCCC-CCCCCCCCccccccccCCcccCcceeeeeeCCC-------------CCCCCCCCC
Q 042259 140 NLGKGVIIGVLDMGITPGHPSFSD-EGMPPPPAKWKGKCELEGANCNNKIIGARNFLN-------------KSEPPIDND 205 (745)
Q Consensus 140 ~~G~gv~VaVIDtGid~~Hp~f~~-~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~-------------~~~~~~d~~ 205 (745)
++|+||+|||||||||+.||+|.+ ++.+|+...|++....+. ......++..+.. +.....|..
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~ 78 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGP--PPGGYYGGGEYTEEIINAALASDNPYDIVPSRDEN 78 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCC--CCccccCceEEeHHHHHHHHhcCCccccCcCCCCC
Confidence 489999999999999999999994 577899999999887653 1111111111110 013456889
Q ss_pred CChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-----------CCHHHHHHHHHHHHhC-----
Q 042259 206 GHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-----------CPESIVNAAIDAAVEE----- 269 (745)
Q Consensus 206 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-----------~~~~~i~~ai~~a~~~----- 269 (745)
||||||||||||+..++ ..+.||||+|+|+++|++. ..+ +...+++.||+|+++.
T Consensus 79 GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~-~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~ 149 (455)
T cd07478 79 GHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQ-AKKYLREFYEDVPFYQETDIMLAIKYLYDKALELN 149 (455)
T ss_pred CchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeec-CCCcccccccccccCcHHHHHHHHHHHHHHHHHhC
Confidence 99999999999986431 2358999999999999998 443 5688999999999874
Q ss_pred CCcEEEEccCCCC-CCChhhHHHHHHHHHhcC-CcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCe
Q 042259 270 GVDVLSISLGSPS-LPFFADAMATAAFTASQK-GILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQE 347 (745)
Q Consensus 270 g~dVIn~S~G~~~-~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~ 347 (745)
.+.|||||||... .....+.++.++..+.++ |++||+||||+|....+..+... .........+.++.++
T Consensus 150 ~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~--------~~~~~~~ie~~v~~~~ 221 (455)
T cd07478 150 KPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV--------PNGETKTVELNVGEGE 221 (455)
T ss_pred CCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec--------cCCceEEEEEEECCCC
Confidence 4689999999864 334455666666666655 99999999999987655443100 0001111223333333
Q ss_pred eeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCC--C---CCCcccceEEEEeeCCCcc------hhhhhhhHhhcC
Q 042259 348 TYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPET--L---KSIDVKGKVVLCQRGGGTQ------RIRKGKDVKDAG 416 (745)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~---~~~~~~g~ivl~~~~g~~~------~~~~~~~~~~~G 416 (745)
......+|.... ..-.+.++.+..... ..-.+.. . .......++.+. .+.... ......+ ...|
T Consensus 222 ~~~~~eiW~~~~-d~~~v~i~sP~Ge~~--~~i~~~~~~~~~~~~~~~~t~i~v~-y~~~~~~~g~~~i~i~~~~-~~~G 296 (455)
T cd07478 222 KGFNLEIWGDFP-DRFSVSIISPSGESS--GRINPGIGGSESYKFVFEGTTVYVY-YYLPEPYTGDQLIFIRFKN-IKPG 296 (455)
T ss_pred cceEEEEecCCC-CEEEEEEECCCCCcc--CccCcCCCcceeEEEEECCeEEEEE-EcCCCCCCCCeEEEEEccC-CCcc
Confidence 322233333221 000111111111000 0000000 0 000001111111 110000 0000111 1123
Q ss_pred ceEEEEecCCC-CCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceE-----ec-C-CCCCceecccCCC
Q 042259 417 GAAMILMNDEL-FDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTV-----IG-K-KSAPEVAVFSSRG 488 (745)
Q Consensus 417 a~g~i~~n~~~-~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~-----~~-~-~~~~~~a~fSS~G 488 (745)
..-+.++.... .+. -..|+|.-.+...+.. ++. +.+..+|+.+.+. ++ . ...+.++.|||||
T Consensus 297 iW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t~----f~~--~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G 366 (455)
T cd07478 297 IWKIRLTGVSITDGR----FDAWLPSRGLLSENTR----FLE--PDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRG 366 (455)
T ss_pred ceEEEEEeccCCCce----EEEEecCcCcCCCCCE----eec--CCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCC
Confidence 33333332211 111 1234443333322211 111 2334455555321 11 1 2345699999999
Q ss_pred CCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhC------CCCCHHHHHHHH
Q 042259 489 PNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAH------PDWSPAAIKSAI 562 (745)
Q Consensus 489 P~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p~~s~~~ik~~L 562 (745)
|+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.|++++||++|
T Consensus 367 ~~~--~~~~kpdi~APG~~i~s~~~~---------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L 435 (455)
T cd07478 367 PTR--DGRIKPDIAAPGVNILTASPG---------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYL 435 (455)
T ss_pred cCC--CCCcCceEEecCCCEEEeecC---------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHH
Confidence 998 789999999999999999997 789999999999999999999999975 567999999999
Q ss_pred hcccccccCCCCcccCCCCCCCCCcccCCC
Q 042259 563 MTTADIVNLEGKPIMNHHLLPADLFAVGAG 592 (745)
Q Consensus 563 ~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 592 (745)
++||+++.. ..+++++||||
T Consensus 436 ~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 436 IRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred HHhCccCCC----------CCCCCCCCCCC
Confidence 999998742 24678899998
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-47 Score=407.09 Aligned_cols=285 Identities=33% Similarity=0.465 Sum_probs=226.2
Q ss_pred CCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCC----------CCCCC
Q 042259 133 SGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNK----------SEPPI 202 (745)
Q Consensus 133 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~----------~~~~~ 202 (745)
+.+|+.+++|+||+|||||+|||++||+|.++-.+ +.++.+.+++..+ ...+.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 65 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP-----------------GCKVAGGYDFVGDDYDGTNPPVPDDDPM 65 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC-----------------CceeccccccCCcccccccCCCCCCCCC
Confidence 45899999999999999999999999999864221 1122223333211 13456
Q ss_pred CCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 042259 203 DNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSP 281 (745)
Q Consensus 203 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~ 281 (745)
|..+|||||||||+|...+ ..+.||||+|+|+.+|++. ..+ .....++++++++++++++|||||||..
T Consensus 66 d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~-~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~ 135 (312)
T cd07489 66 DCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFG-CSGSTTEDTIIAAFLRAYEDGADVITASLGGP 135 (312)
T ss_pred CCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeec-CCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcC
Confidence 7799999999999998532 1258999999999999998 444 7778899999999999999999999986
Q ss_pred CCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCC---CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCC
Q 042259 282 SLPFFADAMATAAFTASQKGILVSCSAGNSGPNSS---TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPK 358 (745)
Q Consensus 282 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (745)
.. +..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 136 ~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------------------- 188 (312)
T cd07489 136 SG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------------------- 188 (312)
T ss_pred CC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec--------------------------
Confidence 42 23355666667888899999999999987643 3356678888888731
Q ss_pred CCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCcc
Q 042259 359 DFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHV 438 (745)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 438 (745)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCcc
Q 042259 439 LPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEEN 518 (745)
Q Consensus 439 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~ 518 (745)
+.||++||+. +...||||+|||++++++++...
T Consensus 189 -------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-- 221 (312)
T cd07489 189 -------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-- 221 (312)
T ss_pred -------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC--
Confidence 4689999998 67899999999999999988732
Q ss_pred CCCcccceeeeccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCcc
Q 042259 519 ITNTKSTFTMISGTSMSCPHLSGIAALLKSAH-PDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPS 597 (745)
Q Consensus 519 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~ 597 (745)
+.|..++|||||||+|||++||++|++ |.+++.+||++|++||..+...+..... ..+++...+|||+||++
T Consensus 222 -----~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~--~~~~~~~~~G~G~vn~~ 294 (312)
T cd07489 222 -----GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL--PDLAPVAQQGAGLVNAY 294 (312)
T ss_pred -----CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc--cCCCCHhhcCcceeeHH
Confidence 459999999999999999999999999 9999999999999999987544321111 11356679999999999
Q ss_pred CCCCCCcc
Q 042259 598 KANDPGLV 605 (745)
Q Consensus 598 ~A~~~~lv 605 (745)
+|++..-.
T Consensus 295 ~a~~~~~~ 302 (312)
T cd07489 295 KALYATTT 302 (312)
T ss_pred HHhcCCcc
Confidence 99995433
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=2.6e-46 Score=388.74 Aligned_cols=248 Identities=27% Similarity=0.341 Sum_probs=204.5
Q ss_pred CccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhh
Q 042259 135 FWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTAST 214 (745)
Q Consensus 135 ~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGi 214 (745)
+|..+++|+||+|||||+|||.+||+|.+....+.. .+........|..+||||||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~----------------------~~~~~~~~~~~~~gHGT~VAgi 59 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF----------------------TYAAAACQDGGASAHGTHVASL 59 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc----------------------CccccCCCCCCCCCcHHHHHHH
Confidence 799999999999999999999999999875322111 1111113456778999999999
Q ss_pred hcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCC-CCChhhHHHH
Q 042259 215 AAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPS-LPFFADAMAT 292 (745)
Q Consensus 215 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~-~~~~~~~~~~ 292 (745)
|+|+... .+.||||+|+|+.+|++..... ++..++++||+||+++|++|||||||... .......+..
T Consensus 60 i~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l~~ 129 (267)
T cd07476 60 IFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILAN 129 (267)
T ss_pred HhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHHHH
Confidence 9987421 2479999999999999872222 45778999999999999999999999754 2334566777
Q ss_pred HHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCC
Q 042259 293 AAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGV 372 (745)
Q Consensus 293 a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (745)
++.++.++|+++|+||||+|.....+++..+++|+||+...
T Consensus 130 a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------------------------- 170 (267)
T cd07476 130 AVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD--------------------------------------- 170 (267)
T ss_pred HHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC---------------------------------------
Confidence 77788999999999999999888888888999999999421
Q ss_pred CCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHH
Q 042259 373 KNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERI 452 (745)
Q Consensus 373 ~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l 452 (745)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccc
Q 042259 453 KAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGT 532 (745)
Q Consensus 453 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGT 532 (745)
.+.++.||++|+.. .||||+|||.+|+++.+. +.|..++||
T Consensus 171 -------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~---------~~~~~~sGT 211 (267)
T cd07476 171 -------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALG---------GEVVRRSGT 211 (267)
T ss_pred -------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCC---------CCeEEeccH
Confidence 12457899999864 488999999999999887 789999999
Q ss_pred cchhHHHHHHHHHHHhhCCC----CCHHHHHHHHhcccccccCC
Q 042259 533 SMSCPHLSGIAALLKSAHPD----WSPAAIKSAIMTTADIVNLE 572 (745)
Q Consensus 533 SmAaP~VAG~aALl~q~~p~----~s~~~ik~~L~~TA~~~~~~ 572 (745)
|||||||||++|||+|++|. ++|++||++|++||+++...
T Consensus 212 S~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 212 SFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 99999999999999999886 89999999999999988543
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-45 Score=392.60 Aligned_cols=277 Identities=43% Similarity=0.621 Sum_probs=215.8
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCC---------------CCCCCC
Q 042259 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEP---------------PIDNDG 206 (745)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~---------------~~d~~g 206 (745)
|+||+|||||+|||++||+|.+... .+.++...++|...... ..|..+
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-----------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATG 63 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-----------------CCCceeeeeECccCCCCcccccccccccccCCCCCCCC
Confidence 8999999999999999999985421 23445555555543222 234889
Q ss_pred ChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCh
Q 042259 207 HGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFF 286 (745)
Q Consensus 207 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~ 286 (745)
|||||||+|+|...+ ...+.|+||+|+|+.+|++.....+...+++++|+|+++++++|||||||..... .
T Consensus 64 HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-~ 134 (295)
T cd07474 64 HGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-P 134 (295)
T ss_pred cHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-C
Confidence 999999999988533 2235899999999999999833347888999999999999999999999976432 3
Q ss_pred hhHHHHHHHHHhcCCcEEEEccCCCCCCCCCc--ccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCc
Q 042259 287 ADAMATAAFTASQKGILVSCSAGNSGPNSSTL--ANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQ 364 (745)
Q Consensus 287 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (745)
.+.+..++..+.++|+++|+||||+|...... +...+++|+||++....
T Consensus 135 ~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------------------- 185 (295)
T cd07474 135 DDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------------------- 185 (295)
T ss_pred CCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------------------
Confidence 45566677788899999999999998765543 56789999999953100
Q ss_pred eeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEE
Q 042259 365 LPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYV 444 (745)
Q Consensus 365 ~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 444 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCC-CCCCCCCCCccCceEeCCccEEeccCCCCccCCCcc
Q 042259 445 SYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSR-GPNTASPGILKPDIIGPGVSILAAWPFSEENITNTK 523 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~-GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~ 523 (745)
.........|+++ |++. +..+||||+|||++|++++....
T Consensus 186 ------------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~------- 226 (295)
T cd07474 186 ------------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG------- 226 (295)
T ss_pred ------------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC-------
Confidence 0011133444554 4554 67899999999999999987632
Q ss_pred cceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCC
Q 042259 524 STFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA 599 (745)
Q Consensus 524 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A 599 (745)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..||+|+||+.+|
T Consensus 227 ~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 227 TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhccCcceeccccC
Confidence 578999999999999999999999999999999999999999998765432 123456899999999987
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-45 Score=378.59 Aligned_cols=235 Identities=29% Similarity=0.402 Sum_probs=192.7
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCCc
Q 042259 145 VIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGAN 224 (745)
Q Consensus 145 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~ 224 (745)
|+|||||||||.+||+|.++.. ..+++.. ....|..+|||||||||+|+....
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~-----------------------~~~~~~~--~~~~~~~~HGT~vAgiia~~~~~~-- 53 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI-----------------------ARLFFAG--PGAPAPSAHGTAVASLLAGAGAQR-- 53 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc-----------------------ccccCCC--CCCCCCCCCHHHHHHHHhCCCCCC--
Confidence 7899999999999999975421 1122221 235678899999999999874221
Q ss_pred ccCCCCcceeeeccCceEEeeecccCCC---CCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCC
Q 042259 225 LFGQANGTAAGMAPLAHLAIYKVCETDL---GCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKG 301 (745)
Q Consensus 225 ~~g~~~g~~~GvAP~A~l~~~kv~~~~~---g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~G 301 (745)
.|+||+|+|+.+|++.... .++..++++||+||++.+++|||||||+... ..+..++.++.++|
T Consensus 54 ---------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~~----~~l~~ai~~a~~~g 120 (239)
T cd05561 54 ---------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPPN----ALLAAAVAAAAARG 120 (239)
T ss_pred ---------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC----HHHHHHHHHHHHCC
Confidence 5999999999999988321 2677889999999999999999999997543 34555666888999
Q ss_pred cEEEEccCCCCCCC-CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCcc
Q 042259 302 ILVSCSAGNSGPNS-STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFC 380 (745)
Q Consensus 302 i~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 380 (745)
+++|+||||+|... ..+++..+++|+||+..
T Consensus 121 ilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------------------------ 152 (239)
T cd05561 121 MVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD------------------------------------------------ 152 (239)
T ss_pred CEEEEecCCCCCCCCccCcccCCCceEEEeec------------------------------------------------
Confidence 99999999999764 45677888999998842
Q ss_pred CCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCC
Q 042259 381 LPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTS 460 (745)
Q Consensus 381 ~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 460 (745)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHH
Q 042259 461 SPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLS 540 (745)
Q Consensus 461 ~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 540 (745)
..+.++.||++|+.. ||+|||.+|+++.+. +.|..++||||||||||
T Consensus 153 ----------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~---------~~~~~~sGTS~AaP~va 199 (239)
T cd05561 153 ----------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPG---------GGYRYVSGTSFAAPFVT 199 (239)
T ss_pred ----------------CCCCccccCCCCCcc--------eEEccccceecccCC---------CCEEEeCCHHHHHHHHH
Confidence 112567899999876 999999999998776 78999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCC
Q 042259 541 GIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAG 592 (745)
Q Consensus 541 G~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 592 (745)
|++|||+|++| ++++|||++|++||+++... ..+..||||
T Consensus 200 G~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~-----------~~d~~~G~G 239 (239)
T cd05561 200 AALALLLQASP-LAPDDARARLAATAKDLGPP-----------GRDPVFGYG 239 (239)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC-----------CcCCCcCCC
Confidence 99999999999 99999999999999987433 456689998
No 12
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-46 Score=383.00 Aligned_cols=334 Identities=27% Similarity=0.385 Sum_probs=259.8
Q ss_pred CCCCceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccc------------cceEEEec--c-eeeEEEEEe
Q 042259 29 ANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHR------------SRMVYGYR--N-VISGFAARL 93 (745)
Q Consensus 29 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~v~~~y~--~-~~~g~s~~l 93 (745)
+..+.+|||.|++...... .+.|.+|+++..+.......++... ..+.+.|. . .++|+.-..
T Consensus 77 ~~~~~~YiV~f~~~~~q~~---~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~f 153 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDASQQK---ISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYF 153 (501)
T ss_pred cccccceEEEeCCCccHHH---HHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccc
Confidence 3457899999997776555 7788888887766443322111111 11344443 3 788999999
Q ss_pred CHHHHHHhhcCCCeEEEEEccccCCCC-----CCCCCccCccCCCC-------Ccc----CCCCCCccEEEEecCCCCCC
Q 042259 94 TAEEVKAMETKSGFISARVENILEPQT-----THSPNFLGLHQNSG-------FWK----DSNLGKGVIIGVLDMGITPG 157 (745)
Q Consensus 94 ~~~~~~~L~~~p~V~~v~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~~----~~~~G~gv~VaVIDtGid~~ 157 (745)
+.+.+..++.+|-++.++++..++... .+....||+.+... .|. .-..|+||..+|+||||+..
T Consensus 154 t~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~ 233 (501)
T KOG1153|consen 154 TGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIE 233 (501)
T ss_pred ccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccc
Confidence 999999999999999999988776543 23334466655211 121 22379999999999999999
Q ss_pred CCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeec
Q 042259 158 HPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMA 237 (745)
Q Consensus 158 Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvA 237 (745)
||||.++ ..| +..+..+ ....|++||||||||+|++.. .|||
T Consensus 234 H~dFegR------a~w-----------------Ga~i~~~-~~~~D~nGHGTH~AG~I~sKt--------------~GvA 275 (501)
T KOG1153|consen 234 HPDFEGR------AIW-----------------GATIPPK-DGDEDCNGHGTHVAGLIGSKT--------------FGVA 275 (501)
T ss_pred ccccccc------eec-----------------ccccCCC-CcccccCCCcceeeeeeeccc--------------cccc
Confidence 9999986 344 1122211 355789999999999999884 7999
Q ss_pred cCceEEeeecccCCCC-CCHHHHHHHHHHHHhC---------CCcEEEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEc
Q 042259 238 PLAHLAIYKVCETDLG-CPESIVNAAIDAAVEE---------GVDVLSISLGSPSLPFFADAMATAAFTASQKGILVSCS 307 (745)
Q Consensus 238 P~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~---------g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~A 307 (745)
.+++|+++||+. ++| +..+++++++|++++. +..|.|||+|+..+.. +..|+..|.+.|+++++|
T Consensus 276 K~s~lvaVKVl~-~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S~a----Ln~AV~~A~~~Gi~fa~A 350 (501)
T KOG1153|consen 276 KNSNLVAVKVLR-SDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRSAA----LNMAVNAASERGIHFAVA 350 (501)
T ss_pred cccceEEEEEec-cCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcccHH----HHHHHHHHhhcCeEEEEc
Confidence 999999999999 666 9999999999999986 4689999999986544 455556899999999999
Q ss_pred cCCCCCCCCC-cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCC
Q 042259 308 AGNSGPNSST-LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLK 386 (745)
Q Consensus 308 AGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 386 (745)
|||+..+.+. .|+.+..+|||||++.
T Consensus 351 AGNe~eDAC~~SPass~~aITVGAst~----------------------------------------------------- 377 (501)
T KOG1153|consen 351 AGNEHEDACNSSPASSKKAITVGASTK----------------------------------------------------- 377 (501)
T ss_pred CCCcchhhhccCcccccccEEeccccc-----------------------------------------------------
Confidence 9999988865 4588999999999642
Q ss_pred CCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEE
Q 042259 387 SIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASI 466 (745)
Q Consensus 387 ~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i 466 (745)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHH
Q 042259 467 VFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALL 546 (745)
Q Consensus 467 ~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 546 (745)
.+.+|.||+||++. ||.|||.+|+|+|.+.. ....+.||||||+|||||++|..
T Consensus 378 -----------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~-------~at~ilSGTSMasPhvaG~aAy~ 431 (501)
T KOG1153|consen 378 -----------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN-------NATAILSGTSMASPHVAGLAAYF 431 (501)
T ss_pred -----------ccchhhhcCcccee--------eeecCchhhhhhhhcCc-------cchheeecccccCcchhhhHHHh
Confidence 12789999999999 99999999999999854 46678999999999999999999
Q ss_pred HhhCCC---------CCHHHHHHHHhcccc
Q 042259 547 KSAHPD---------WSPAAIKSAIMTTAD 567 (745)
Q Consensus 547 ~q~~p~---------~s~~~ik~~L~~TA~ 567 (745)
+..+|- .+|.++|..++.-..
T Consensus 432 ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 432 LSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 999882 378888888776554
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-44 Score=377.78 Aligned_cols=242 Identities=35% Similarity=0.486 Sum_probs=198.9
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCC-CCCCCChhhhhhhhcccccCC
Q 042259 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP-IDNDGHGTHTASTAAGNFVNG 222 (745)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~-~d~~gHGThVAGiiag~~~~~ 222 (745)
||+||||||||+++||+|..... ..+.++.+.++|.+..... .|..+|||||||||+|...
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~----------------~~~~~i~~~~~~~~~~~~~~~~~~~HGT~vagiia~~~~-- 62 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL----------------FKNLRILGEYDFVDNSNNTNYTDDDHGTAVLSTMAGYTP-- 62 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc----------------ccCCceeeeecCccCCCCCCCCCCCchhhhheeeeeCCC--
Confidence 79999999999999999952110 1245677888888765444 6789999999999998742
Q ss_pred CcccCCCCcceeeeccCceEEeeecccCCCC---CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCh------------h
Q 042259 223 ANLFGQANGTAAGMAPLAHLAIYKVCETDLG---CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFF------------A 287 (745)
Q Consensus 223 ~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g---~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~------------~ 287 (745)
+.+.||||+|+|+.+|+.. ... .....++.+++|+.+.+++|||||||....... .
T Consensus 63 --------~~~~GvAp~a~l~~~~~~~-~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~ 133 (261)
T cd07493 63 --------GVMVGTAPNASYYLARTED-VASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKT 133 (261)
T ss_pred --------CCEEEeCCCCEEEEEEecc-cCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccc
Confidence 2258999999999999876 222 345678999999999999999999997642211 2
Q ss_pred hHHHHHHHHHhcCCcEEEEccCCCCCC---CCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCc
Q 042259 288 DAMATAAFTASQKGILVSCSAGNSGPN---SSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQ 364 (745)
Q Consensus 288 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (745)
..+..++..+.++|+++|+||||+|.. ...++...+++|+||+..
T Consensus 134 ~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~-------------------------------- 181 (261)
T cd07493 134 SFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD-------------------------------- 181 (261)
T ss_pred hHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec--------------------------------
Confidence 346667778889999999999999987 355677889999999842
Q ss_pred eeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEE
Q 042259 365 LPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYV 444 (745)
Q Consensus 365 ~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 444 (745)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCccc
Q 042259 445 SYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKS 524 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~ 524 (745)
..+.++.||++||+. ++++||||+|||.++++.... +
T Consensus 182 --------------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~---------~ 218 (261)
T cd07493 182 --------------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD---------G 218 (261)
T ss_pred --------------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC---------C
Confidence 112567899999998 789999999999999986655 6
Q ss_pred ceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 525 ~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 219 ~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 219 NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999985
No 14
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=4.4e-44 Score=384.80 Aligned_cols=221 Identities=29% Similarity=0.411 Sum_probs=164.9
Q ss_pred CCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC--CCHHHHHHHHHHHHhCCCcEEEEccC
Q 042259 202 IDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG--CPESIVNAAIDAAVEEGVDVLSISLG 279 (745)
Q Consensus 202 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVIn~S~G 279 (745)
.|+.+|||||||||||+..+ ...+.||||+|+|+++|+++...+ .....+++||++|++.+++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 46789999999999998422 223589999999999999873233 23457999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHH-HhcCCcEEEEccCCCCCCCCCc--cc-CCCceEEEeecccccceEEEEEeCCCeeeeeeecc
Q 042259 280 SPSLPFFADAMATAAFT-ASQKGILVSCSAGNSGPNSSTL--AN-EAPWMLTVGASTIDRSIVALTQLGNQETYDGETIF 355 (745)
Q Consensus 280 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~--~~-~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (745)
..........+...+.+ +.++|+++|+||||+|+..++. ++ ..+++|+|||..........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------- 318 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------- 318 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc---------------
Confidence 86432111223333333 3468999999999999877654 33 57899999995311100000
Q ss_pred CCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcccccc
Q 042259 356 QPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVAD 435 (745)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 435 (745)
| .
T Consensus 319 -------------y----------~------------------------------------------------------- 320 (412)
T cd04857 319 -------------Y----------S------------------------------------------------------- 320 (412)
T ss_pred -------------c----------c-------------------------------------------------------
Confidence 0 0
Q ss_pred CccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCC
Q 042259 436 NHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFS 515 (745)
Q Consensus 436 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~ 515 (745)
......+.++.||||||+. +|.+||||+|||+.|.+.-...
T Consensus 321 -------------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~ 361 (412)
T cd04857 321 -------------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT 361 (412)
T ss_pred -------------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC
Confidence 0001134688999999998 8999999999999998752211
Q ss_pred CccCCCcccceeeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHhcccccc
Q 042259 516 EENITNTKSTFTMISGTSMSCPHLSGIAALLKS----AHPDWSPAAIKSAIMTTADIV 569 (745)
Q Consensus 516 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~ 569 (745)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 -------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 -------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 15789999999999999999999985 578999999999999999863
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2.9e-44 Score=375.16 Aligned_cols=247 Identities=33% Similarity=0.443 Sum_probs=194.3
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccC
Q 042259 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVN 221 (745)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 221 (745)
|+||+|||||+|||++||+|.+.-... +....... . ...+.......+.|..+|||||||||+|....
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~~----~~~~~~~~---~-----~~~d~~~~~~~~~d~~~HGT~vagii~g~~~~ 68 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRGW----GGGSADHD---Y-----NWFDPVGNTPLPYDDNGHGTHTMGTMVGNDGD 68 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhccccc----CCCCcccc---c-----ccccCCCCCCCCCCCCCchhhhhhheeecCCC
Confidence 899999999999999999998641100 00000000 0 00111111245667899999999999987422
Q ss_pred CCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh------------CCCcEEEEccCCCCCCChhhH
Q 042259 222 GANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE------------EGVDVLSISLGSPSLPFFADA 289 (745)
Q Consensus 222 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~------------~g~dVIn~S~G~~~~~~~~~~ 289 (745)
. + ..||||+|+|+.+|++. ..++...+++++++++++ .+++|||||||.... ....
T Consensus 69 ~--------~-~~GvAp~a~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~--~~~~ 136 (264)
T cd07481 69 G--------Q-QIGVAPGARWIACRALD-RNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG--DNEW 136 (264)
T ss_pred C--------C-ceEECCCCeEEEEEeec-CCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC--CchH
Confidence 1 1 27999999999999998 666888899999999875 789999999998753 2334
Q ss_pred HHHHHHHHhcCCcEEEEccCCCCCCCCC---cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCcee
Q 042259 290 MATAAFTASQKGILVSCSAGNSGPNSST---LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLP 366 (745)
Q Consensus 290 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (745)
+..++..+.++|+++|+||||++..... ++...+++|+||+..
T Consensus 137 ~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~---------------------------------- 182 (264)
T cd07481 137 LQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD---------------------------------- 182 (264)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC----------------------------------
Confidence 4445557778999999999999876433 567788999999842
Q ss_pred eEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEch
Q 042259 367 LVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSY 446 (745)
Q Consensus 367 ~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~ 446 (745)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccce
Q 042259 447 AAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTF 526 (745)
Q Consensus 447 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y 526 (745)
..+.++.||++||.. .+++||||+|||.+|+++.+. +.|
T Consensus 183 ------------------------------~~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~---------~~~ 221 (264)
T cd07481 183 ------------------------------RNDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG---------GGY 221 (264)
T ss_pred ------------------------------CCCCCccccCCCCCC--CCCcCceEEECCCCeEEecCC---------Cce
Confidence 112678899999998 589999999999999999987 789
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHhcccc
Q 042259 527 TMISGTSMSCPHLSGIAALLKSAHPD--WSPAAIKSAIMTTAD 567 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p~--~s~~~ik~~L~~TA~ 567 (745)
..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 222 ~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 222 GSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999 999999999999985
No 16
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=3.3e-44 Score=378.83 Aligned_cols=251 Identities=31% Similarity=0.434 Sum_probs=185.2
Q ss_pred CccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccC---C-cccCcc--eeeeeeCCCC-------------------
Q 042259 143 KGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELE---G-ANCNNK--IIGARNFLNK------------------- 197 (745)
Q Consensus 143 ~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~---~-~~~n~k--i~~~~~~~~~------------------- 197 (745)
|+|+|||||||||++||+|++. .|....+.. . ..-|.. -+.+++|...
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999864 232221110 0 000000 0233444320
Q ss_pred ----CCCCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcE
Q 042259 198 ----SEPPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDV 273 (745)
Q Consensus 198 ----~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dV 273 (745)
...+.+..+|||||||||+|...+. .| +.||||+|+|+.+|++. .......++++||+||+++|++|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~-------~g-~~GvAp~a~i~~~k~~~-~g~~~~~~i~~Ai~~a~~~g~~I 144 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNG-------IG-IDGVADNVKIMPLRIVP-NGDERDKDIANAIRYAVDNGAKV 144 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCC-------Cc-eEEECCCCEEEEEEEec-CCCcCHHHHHHHHHHHHHCCCcE
Confidence 0223457899999999999885332 22 48999999999999987 55567788999999999999999
Q ss_pred EEEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCC---cc--------cCCCceEEEeecccccceEEEEE
Q 042259 274 LSISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSST---LA--------NEAPWMLTVGASTIDRSIVALTQ 342 (745)
Q Consensus 274 In~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVga~~~~~~~~~~~~ 342 (745)
||||||..... ....+..++..+.++|+++|+||||+|..... ++ ...+++|+||+....
T Consensus 145 iN~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~-------- 215 (291)
T cd07483 145 INMSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK-------- 215 (291)
T ss_pred EEeCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc--------
Confidence 99999975322 22345566668889999999999999865321 11 123556666663210
Q ss_pred eCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEE
Q 042259 343 LGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMIL 422 (745)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~ 422 (745)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceE
Q 042259 423 MNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDII 502 (745)
Q Consensus 423 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~ 502 (745)
.....++.||++|+. +|||+
T Consensus 216 -----------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~ 235 (291)
T cd07483 216 -----------------------------------------------------YENNLVANFSNYGKK-------NVDVF 235 (291)
T ss_pred -----------------------------------------------------CCcccccccCCCCCC-------ceEEE
Confidence 011146789999974 45999
Q ss_pred eCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 503 GPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 503 APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 236 APG~~i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 236 APGERIYSTTPD---------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred eCCCCeEeccCc---------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999999887 78999999999999999999999999999999999999999984
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-43 Score=370.76 Aligned_cols=253 Identities=38% Similarity=0.570 Sum_probs=204.2
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCC---CCCCCCCCCCChhhhhhhhccc
Q 042259 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLN---KSEPPIDNDGHGTHTASTAAGN 218 (745)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~---~~~~~~d~~gHGThVAGiiag~ 218 (745)
|+||+|+|||+||+++||+|.+.... .+.+.. ......|..+|||||||+|+|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~-----------------------~~~~~~~~~~~~~~~d~~~HGT~vAgiiag~ 57 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR-----------------------FADFVNTVNGRTTPYDDNGHGTHVAGIIAGS 57 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc-----------------------cccccccccCCCCCCCCCCchHHHHHHHhcC
Confidence 89999999999999999999865221 111111 1245667889999999999998
Q ss_pred ccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhC----CCcEEEEccCCCCC-CChhhHHHH
Q 042259 219 FVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEE----GVDVLSISLGSPSL-PFFADAMAT 292 (745)
Q Consensus 219 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~S~G~~~~-~~~~~~~~~ 292 (745)
..+. .+.+.||||+|+|+.+|+++ ..+ ....++++|++|+++. +++|||||||.... ....+.+..
T Consensus 58 ~~~~-------~~~~~Giap~a~i~~~~v~~-~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~ 129 (264)
T cd07487 58 GRAS-------NGKYKGVAPGANLVGVKVLD-DSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQ 129 (264)
T ss_pred Cccc-------CCceEEECCCCeEEEEEeec-CCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHH
Confidence 5331 22358999999999999998 544 7788999999999998 99999999998753 445567777
Q ss_pred HHHHHhcCCcEEEEccCCCCCCCC--CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEec
Q 042259 293 AAFTASQKGILVSCSAGNSGPNSS--TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYP 370 (745)
Q Consensus 293 a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (745)
++.++.++|+++|+||||++.... ..+...+++|+||+...+..
T Consensus 130 ~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------------------------- 175 (264)
T cd07487 130 AVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------------------------- 175 (264)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------------------------
Confidence 788889999999999999998775 55678899999999532110
Q ss_pred CCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHH
Q 042259 371 GVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGE 450 (745)
Q Consensus 371 ~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~ 450 (745)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeec
Q 042259 451 RIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMIS 530 (745)
Q Consensus 451 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~s 530 (745)
....++.||++||+. +++.||||+|||++|++..+............|..++
T Consensus 176 --------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~ 227 (264)
T cd07487 176 --------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMS 227 (264)
T ss_pred --------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccccCCCCCCceEecc
Confidence 001578899999998 7899999999999999976543322223337889999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 531 GTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 531 GTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 228 GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 228 GTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999985
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.9e-43 Score=370.78 Aligned_cols=260 Identities=30% Similarity=0.419 Sum_probs=200.3
Q ss_pred CCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCC----CCCCCCCCCCCChh
Q 042259 134 GFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL----NKSEPPIDNDGHGT 209 (745)
Q Consensus 134 ~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~----~~~~~~~d~~gHGT 209 (745)
++|..+++|+||+|+|||||||++||+|.+.........+ ...+.+. +......|..||||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~gHGT 65 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPA---------------VNGYNFVPNVGDIDNDVSVGGGHGT 65 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccc---------------cCCcccccccCCcCCCCCCCCCCHH
Confidence 3799999999999999999999999999976111000000 0011111 11134457789999
Q ss_pred hhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhH
Q 042259 210 HTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADA 289 (745)
Q Consensus 210 hVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~ 289 (745)
||||||+|+..+.....|.. .+.|+||+|+|+.+|++..........++++|+|+++.+++|||||||......+...
T Consensus 66 ~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ 143 (273)
T cd07485 66 HVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPL 143 (273)
T ss_pred HHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccccCHH
Confidence 99999998754322211111 2356999999999999983334778889999999999999999999998753334455
Q ss_pred HHHHHHHHhcC-------CcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCC
Q 042259 290 MATAAFTASQK-------GILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPS 362 (745)
Q Consensus 290 ~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (745)
+..++..+.++ |+++|+||||++.....+++..+++|+||+.+.
T Consensus 144 ~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~----------------------------- 194 (273)
T cd07485 144 LKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT----------------------------- 194 (273)
T ss_pred HHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC-----------------------------
Confidence 66666677777 999999999999888777888899999998421
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEE
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAV 442 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 442 (745)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCc-cEEeccCCCCccCCC
Q 042259 443 YVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGV-SILAAWPFSEENITN 521 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~-~I~sa~~~~~~~~~~ 521 (745)
.+.++.||++|+.. ||+|||. .|+++.+... ..
T Consensus 195 -----------------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~---~~ 228 (273)
T cd07485 195 -----------------------------------NDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLD---GD 228 (273)
T ss_pred -----------------------------------CCCcCccccCCCce--------EEEeCCCCcccccccccc---CC
Confidence 12567899999887 9999999 8998877531 11
Q ss_pred cccceeeeccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHhcc
Q 042259 522 TKSTFTMISGTSMSCPHLSGIAALLKSAHPD-WSPAAIKSAIMTT 565 (745)
Q Consensus 522 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-~s~~~ik~~L~~T 565 (745)
..+.|..++|||||||+|||++|||+|++|+ ++++|||++|++|
T Consensus 229 ~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 229 GGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 2267899999999999999999999999999 9999999999986
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=6.8e-43 Score=363.28 Aligned_cols=232 Identities=36% Similarity=0.526 Sum_probs=195.5
Q ss_pred CccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhh
Q 042259 135 FWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTAST 214 (745)
Q Consensus 135 ~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGi 214 (745)
+|..+++|+||+|+|||+||+++||+|.++ +...+++... ....|..+||||||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~-----------------------~~~~~~~~~~-~~~~d~~~HGT~vAgi 72 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR-----------------------AIWGADFVGG-DPDSDCNGHGTHVAGT 72 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC-----------------------eeeeeecCCC-CCCCCCCccHHHHHHH
Confidence 677889999999999999999999999854 2233444443 2366889999999999
Q ss_pred hcccccCCCcccCCCCcceeeeccCceEEeeecccCCC-CCCHHHHHHHHHHHHhC-----CCcEEEEccCCCCCCChhh
Q 042259 215 AAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDL-GCPESIVNAAIDAAVEE-----GVDVLSISLGSPSLPFFAD 288 (745)
Q Consensus 215 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~a~~~-----g~dVIn~S~G~~~~~~~~~ 288 (745)
|+++. .||||+|+|+.+|+++ .. ....+.++++++|+++. +++|||||||... ..
T Consensus 73 ia~~~--------------~GvAp~a~i~~~~i~~-~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~----~~ 133 (255)
T cd04077 73 VGGKT--------------YGVAKKANLVAVKVLD-CNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA----ST 133 (255)
T ss_pred HHccc--------------cCcCCCCeEEEEEEeC-CCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC----CH
Confidence 99863 6999999999999998 54 47788999999999987 4899999999875 34
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCCCCC-CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceee
Q 042259 289 AMATAAFTASQKGILVSCSAGNSGPNS-STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPL 367 (745)
Q Consensus 289 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (745)
.+..++.++.++|+++|+||||+|... ...+...+++|+||+...
T Consensus 134 ~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~---------------------------------- 179 (255)
T cd04077 134 ALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS---------------------------------- 179 (255)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC----------------------------------
Confidence 455555678889999999999999876 456778899999998421
Q ss_pred EecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchH
Q 042259 368 VYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYA 447 (745)
Q Consensus 368 ~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~ 447 (745)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCccccee
Q 042259 448 AGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFT 527 (745)
Q Consensus 448 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~ 527 (745)
.+.++.||++||.. |++|||.+|.++..... ..|.
T Consensus 180 ------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~-------~~~~ 214 (255)
T cd04077 180 ------------------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIGSD-------TATA 214 (255)
T ss_pred ------------------------------CCCccCcccCCCCC--------cEEeCCCCeEecccCCC-------CcEE
Confidence 12467899999987 99999999999887422 6889
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhccccc
Q 042259 528 MISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADI 568 (745)
Q Consensus 528 ~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~ 568 (745)
.++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 215 ~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 215 TLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred eeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999974
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.5e-42 Score=361.88 Aligned_cols=242 Identities=33% Similarity=0.498 Sum_probs=204.0
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhh
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHT 211 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThV 211 (745)
...+|..+ +|+||+|+|||+||+++||+|... ++...+++.+....+.|..+|||||
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~----------------------~~~~~~~~~~~~~~~~d~~~HGT~v 74 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV----------------------KFVLGYDFVDNDSDAMDDNGHGTHV 74 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC----------------------CcccceeccCCCCCCCCCCCcHHHH
Confidence 45689988 999999999999999999998532 2334455555445577889999999
Q ss_pred hhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHH
Q 042259 212 ASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMA 291 (745)
Q Consensus 212 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~ 291 (745)
||||++..... ..+.|+||+|+|+.+|+++....+...+++++++++++.+++|||||||... ....+.
T Consensus 75 agii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~---~~~~~~ 143 (260)
T cd07484 75 AGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL---GSTALQ 143 (260)
T ss_pred HHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC---CCHHHH
Confidence 99999874321 2258999999999999998333478889999999999999999999999874 334556
Q ss_pred HHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecC
Q 042259 292 TAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPG 371 (745)
Q Consensus 292 ~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (745)
.++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 144 ~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~-------------------------------------- 185 (260)
T cd07484 144 EAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ-------------------------------------- 185 (260)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC--------------------------------------
Confidence 666678899999999999999988889999999999999421
Q ss_pred CCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHH
Q 042259 372 VKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGER 451 (745)
Q Consensus 372 ~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~ 451 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeecc
Q 042259 452 IKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISG 531 (745)
Q Consensus 452 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sG 531 (745)
.+.++.||++|+.. |++|||.+|+++.+. ..|..++|
T Consensus 186 --------------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~---------~~~~~~~G 222 (260)
T cd07484 186 --------------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPD---------GDYAYMSG 222 (260)
T ss_pred --------------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCC---------CCEEEeee
Confidence 12567899999876 999999999998877 68999999
Q ss_pred ccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccc
Q 042259 532 TSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIV 569 (745)
Q Consensus 532 TSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~ 569 (745)
||||||+|||++||+++++| +++.+||++|++||+++
T Consensus 223 TS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 223 TSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999999999999999999 99999999999999865
No 21
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.6e-43 Score=369.71 Aligned_cols=258 Identities=28% Similarity=0.303 Sum_probs=186.1
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCCcc
Q 042259 146 IIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGANL 225 (745)
Q Consensus 146 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~ 225 (745)
+|||||||||.+||+|.+.- .....+........|..||||||||||++....
T Consensus 2 ~VaviDtGi~~~hp~l~~~~-----------------------~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~---- 54 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL-----------------------AEDDLDSDEPGWTADDLGHGTAVAGLALYGDLT---- 54 (291)
T ss_pred EEEEecCCCCCCChhhhhhh-----------------------ccccccccCCCCcCCCCCChHHHHHHHHcCccc----
Confidence 79999999999999998541 111222211112568999999999999976432
Q ss_pred cCCCCcceeeeccCceEEeeecccCCCC-----CCHHHHHHHHHHHHhCC---CcEEEEccCCCCCCCh--hhHHHHHHH
Q 042259 226 FGQANGTAAGMAPLAHLAIYKVCETDLG-----CPESIVNAAIDAAVEEG---VDVLSISLGSPSLPFF--ADAMATAAF 295 (745)
Q Consensus 226 ~g~~~g~~~GvAP~A~l~~~kv~~~~~g-----~~~~~i~~ai~~a~~~g---~dVIn~S~G~~~~~~~--~~~~~~a~~ 295 (745)
.....|+||+++|+.+|++. ..+ ....++++||+|+++.+ ++|||||||....... ...+..++.
T Consensus 55 ----~~~~~gvap~~~l~~~kv~~-~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~id 129 (291)
T cd04847 55 ----LPGNGLPRPGCRLESVRVLP-PNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAALD 129 (291)
T ss_pred ----CCCCCCcccceEEEEEEEcC-CCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHHHH
Confidence 11237999999999999998 442 56778999999999853 4999999998753211 113333332
Q ss_pred -HHhcCCcEEEEccCCCCCCCCC------------cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCC
Q 042259 296 -TASQKGILVSCSAGNSGPNSST------------LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPS 362 (745)
Q Consensus 296 -~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (745)
.+.++|++||+||||++..... .++.++++|+|||.+.+......
T Consensus 130 ~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~---------------------- 187 (291)
T cd04847 130 QLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR---------------------- 187 (291)
T ss_pred HHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc----------------------
Confidence 3568999999999999987643 34667899999996533211000
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEE
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAV 442 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 442 (745)
. ..
T Consensus 188 -------s----------------------------~~------------------------------------------ 190 (291)
T cd04847 188 -------A----------------------------RY------------------------------------------ 190 (291)
T ss_pred -------c----------------------------cc------------------------------------------
Confidence 0 00
Q ss_pred EEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCC------
Q 042259 443 YVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSE------ 516 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~------ 516 (745)
+.......+.||||||.. ++.+||||+|||++|.+..+...
T Consensus 191 -------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~ 237 (291)
T cd04847 191 -------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLS 237 (291)
T ss_pred -------------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcce
Confidence 000001233499999998 89999999999999987654211
Q ss_pred ---ccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 517 ---ENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 517 ---~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
.........|..++|||||||||||+||||+|++|+++|++||++|++||+
T Consensus 238 ~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 238 LLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 011223368899999999999999999999999999999999999999985
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.7e-42 Score=356.38 Aligned_cols=249 Identities=36% Similarity=0.471 Sum_probs=186.2
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCC----CCCCCCCCCCCChhhhhhhhcccc
Q 042259 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFL----NKSEPPIDNDGHGTHTASTAAGNF 219 (745)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~----~~~~~~~d~~gHGThVAGiiag~~ 219 (745)
||+|||||+|||++||+|.+.-. ...+|. .......|..+|||||||||+|+.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~-----------------------~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~ 57 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA-----------------------QWADFDENRRISATEVFDAGGHGTHVSGTIGGGG 57 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC-----------------------CceeccCCCCCCCCCCCCCCCcHHHHHHHHhcCC
Confidence 79999999999999999986421 111121 111345677899999999999985
Q ss_pred cCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhc
Q 042259 220 VNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQ 299 (745)
Q Consensus 220 ~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~ 299 (745)
. .+.+.||||+++|+.+|++. ..++...+++++++|+++.+++|||||||..... .+.+...+....+
T Consensus 58 ~---------~~~~~GvAp~a~i~~~~v~~-~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~~~~~~ 125 (254)
T cd07490 58 A---------KGVYIGVAPEADLLHGKVLD-DGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAVEALSN 125 (254)
T ss_pred C---------CCCEEEECCCCEEEEEEEec-CCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHHHHHHH
Confidence 3 12257999999999999998 6567889999999999999999999999987532 3334433334433
Q ss_pred -CCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCC
Q 042259 300 -KGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAA 378 (745)
Q Consensus 300 -~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (745)
+|+++|+||||+|.....+++..+++|+||+++.+..... +.
T Consensus 126 ~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~-----------------------------~s-------- 168 (254)
T cd07490 126 QTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAW-----------------------------FS-------- 168 (254)
T ss_pred cCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccC-----------------------------cc--------
Confidence 6999999999999888888889999999999643221000 00
Q ss_pred ccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhc
Q 042259 379 FCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINS 458 (745)
Q Consensus 379 ~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 458 (745)
.+
T Consensus 169 --------------------~~---------------------------------------------------------- 170 (254)
T cd07490 169 --------------------SF---------------------------------------------------------- 170 (254)
T ss_pred --------------------CC----------------------------------------------------------
Confidence 00
Q ss_pred CCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHH
Q 042259 459 TSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPH 538 (745)
Q Consensus 459 ~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~ 538 (745)
.......++.+|... ....|||++|||.+|+++... ......|..++|||||||+
T Consensus 171 -------------------g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~-----~~~~~~~~~~~GTS~AaP~ 225 (254)
T cd07490 171 -------------------GSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQG-----ANGDGQYTRLSGTSMAAPH 225 (254)
T ss_pred -------------------cccccccccCCCCCc-cCCcCceEEeccCCeEccccC-----CCCCCCeeecccHHHHHHH
Confidence 001122233344332 457899999999999995422 1122679999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 539 LSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 539 VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
|||++|||+|++|++++.+||++|++||+
T Consensus 226 vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 226 VAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999984
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6e-42 Score=361.77 Aligned_cols=257 Identities=27% Similarity=0.341 Sum_probs=189.0
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCCCCC------ccccccccCC-----cccCcceeeeeeCCCCCCCCCCCCCChhhhh
Q 042259 144 GVIIGVLDMGITPGHPSFSDEGMPPPPA------KWKGKCELEG-----ANCNNKIIGARNFLNKSEPPIDNDGHGTHTA 212 (745)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~------~~~~~~~~~~-----~~~n~ki~~~~~~~~~~~~~~d~~gHGThVA 212 (745)
||+|+|||||||++||+|.++....... ..++...... .+.+.+.. ...........+..+||||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~HGT~vA 78 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDV--PPGGFCGSGVSPSSWHGTHVA 78 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccc--cccccccCCCCCCCCCHHHHH
Confidence 7999999999999999999753211000 0000000000 00000100 000000133456789999999
Q ss_pred hhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHH----------hCCCcEEEEccCCCC
Q 042259 213 STAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAV----------EEGVDVLSISLGSPS 282 (745)
Q Consensus 213 Giiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~----------~~g~dVIn~S~G~~~ 282 (745)
|||+|...++ . .+.||||+|+|+.+|+++ ..+...+++++|++|++ .++++|||||||...
T Consensus 79 giiaa~~~~~-------~-~~~GvAp~a~i~~~~v~~-~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~ 149 (285)
T cd07496 79 GTIAAVTNNG-------V-GVAGVAWGARILPVRVLG-KCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDG 149 (285)
T ss_pred HHHhCcCCCC-------C-CceeecCCCeEEEEEEec-CCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCC
Confidence 9999985421 1 247999999999999998 66668889999999998 457899999999864
Q ss_pred CCChhhHHHHHHHHHhcCCcEEEEccCCCCCCC-CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCC
Q 042259 283 LPFFADAMATAAFTASQKGILVSCSAGNSGPNS-STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFP 361 (745)
Q Consensus 283 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (745)
.. ...+..++..+.++|+++|+||||++... ..++...+++|+||+.+.
T Consensus 150 ~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------------------- 199 (285)
T cd07496 150 AC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL---------------------------- 199 (285)
T ss_pred CC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC----------------------------
Confidence 31 34566666688899999999999999876 667788899999998421
Q ss_pred CCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccE
Q 042259 362 SKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPA 441 (745)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~ 441 (745)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCc----
Q 042259 442 VYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEE---- 517 (745)
Q Consensus 442 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~---- 517 (745)
.+.++.||++||.. ||+|||++|.++......
T Consensus 200 ------------------------------------~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~ 235 (285)
T cd07496 200 ------------------------------------RGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSN 235 (285)
T ss_pred ------------------------------------CCCcccccCCCCCC--------CEEeCCCCccccCCCCcccccc
Confidence 12668899999987 999999999988765321
Q ss_pred --cCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcc
Q 042259 518 --NITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTT 565 (745)
Q Consensus 518 --~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 565 (745)
........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 236 ~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 236 TGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 112223578899999999999999999999999999999999999986
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.1e-42 Score=360.82 Aligned_cols=249 Identities=24% Similarity=0.329 Sum_probs=184.6
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCC-CCCCCCCCCCChhh
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLN-KSEPPIDNDGHGTH 210 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~-~~~~~~d~~gHGTh 210 (745)
...+|+.+++|+||+|+||||||+..|| |..+++. + +. .+.. ......|+.|||||
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~-----------~~----~~~~~~~~~~~D~~gHGT~ 66 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V-----------RV----VLAPGATDPACDENGHGTG 66 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c-----------ee----ecCCCCCCCCCCCCCcchh
Confidence 4569999999999999999999999888 7644221 0 00 0111 11345678899999
Q ss_pred hhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCC------
Q 042259 211 TASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLP------ 284 (745)
Q Consensus 211 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~------ 284 (745)
|||++ .||||+|+|+.+|+++ . ...++++||+||++++++|||||||.....
T Consensus 67 vag~i------------------~GvAP~a~i~~vkv~~-~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~ 124 (298)
T cd07494 67 ESANL------------------FAIAPGAQFIGVKLGG-P---DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWS 124 (298)
T ss_pred eeece------------------eEeCCCCeEEEEEccC-C---CcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccc
Confidence 99865 4999999999999988 3 567799999999999999999999985321
Q ss_pred ----ChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCC
Q 042259 285 ----FFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDF 360 (745)
Q Consensus 285 ----~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (745)
.....+..++.++.++|++||+||||++. .+|+..|++|+||++..+..-
T Consensus 125 ~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g----------------------- 178 (298)
T cd07494 125 RSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG----------------------- 178 (298)
T ss_pred cccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC-----------------------
Confidence 12345777777889999999999999874 578999999999996432200
Q ss_pred CCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCcccc
Q 042259 361 PSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLP 440 (745)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p 440 (745)
T Consensus 179 -------------------------------------------------------------------------------- 178 (298)
T cd07494 179 -------------------------------------------------------------------------------- 178 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccC--CCCCCCCCCCccCce----------------E
Q 042259 441 AVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSS--RGPNTASPGILKPDI----------------I 502 (745)
Q Consensus 441 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS--~GP~~~~~g~~KPDi----------------~ 502 (745)
.....+++ +... ..+++.|||+ +
T Consensus 179 --------------------------------------~~~~~~~~~~~~s~-~~~g~~~pd~~~~~g~~~~~~~~~~~~ 219 (298)
T cd07494 179 --------------------------------------ARRASSYASGFRSK-IYPGRQVPDVCGLVGMLPHAAYLMLPV 219 (298)
T ss_pred --------------------------------------cccccccccCcccc-cCCCCccCccccccCcCCccccccccc
Confidence 00001111 1111 1246677777 4
Q ss_pred eCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccC
Q 042259 503 GPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNL 571 (745)
Q Consensus 503 APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~ 571 (745)
|||..|.++..... ........|..++|||||||||||++|||+|++|.|++++||.+|++||+++..
T Consensus 220 APG~~i~~~~~~~~-~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 220 PPGSQLDRSCAAFP-DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred CCCcceeccccCCC-CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 79999876543211 011123679999999999999999999999999999999999999999997743
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=8.4e-42 Score=362.81 Aligned_cols=277 Identities=32% Similarity=0.393 Sum_probs=202.1
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcc
Q 042259 138 DSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAG 217 (745)
Q Consensus 138 ~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag 217 (745)
.+++|+||+|||||+|||++||+|.+.... +....++++.....+.. ...|..+|||||||||+|
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~~~~~~~~~~~~~~~~~---~~~d~~~HGT~vAgiia~ 66 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------KTNLFHRKIVRYDSLSD---TKDDVDGHGTHVAGIIAG 66 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------cCccCcccEEEeeccCC---CCCCCCCCcchhheeecc
Confidence 578999999999999999999999764210 00123445555544443 233789999999999999
Q ss_pred cccCCCcccCCCCcceeeeccCceEEeeecccCCCC--CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHH
Q 042259 218 NFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG--CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAF 295 (745)
Q Consensus 218 ~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~ 295 (745)
....... ...+.||||+|+|+.+|++. ..+ ....++..+++++.+.+++|||||||......+ .....++.
T Consensus 67 ~~~~~~~-----~~~~~GvAp~a~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~~-~~~~~~~~ 139 (293)
T cd04842 67 KGNDSSS-----ISLYKGVAPKAKLYFQDIGD-TSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGY-TLLARAYD 139 (293)
T ss_pred CCcCCCc-----ccccccccccCeEEEEEeec-cCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcccc-chHHHHHH
Confidence 8644221 11358999999999999988 443 556678899999999999999999998753211 11222222
Q ss_pred HH-h-cCCcEEEEccCCCCCCCC---CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEec
Q 042259 296 TA-S-QKGILVSCSAGNSGPNSS---TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYP 370 (745)
Q Consensus 296 ~a-~-~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (745)
++ . .+|+++|+||||++.... ..+...+++|+||+++.+.....
T Consensus 140 ~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------------------------------- 188 (293)
T cd04842 140 QFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------------------------------- 188 (293)
T ss_pred HHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-------------------------------
Confidence 22 2 389999999999998765 66788999999999653321000
Q ss_pred CCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHH
Q 042259 371 GVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGE 450 (745)
Q Consensus 371 ~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~ 450 (745)
..|..
T Consensus 189 -------~~~~~-------------------------------------------------------------------- 193 (293)
T cd04842 189 -------EGGLG-------------------------------------------------------------------- 193 (293)
T ss_pred -------ccccc--------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeec
Q 042259 451 RIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMIS 530 (745)
Q Consensus 451 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~s 530 (745)
.....+.++.||++||+. ++++||||+|||++|+++.+............|..++
T Consensus 194 -----------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (293)
T cd04842 194 -----------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTSKS 248 (293)
T ss_pred -----------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCCCCCCChhheeecC
Confidence 011234789999999998 7899999999999999997542111122336788999
Q ss_pred cccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHhcccc
Q 042259 531 GTSMSCPHLSGIAALLKSAH-----P---DWSPAAIKSAIMTTAD 567 (745)
Q Consensus 531 GTSmAaP~VAG~aALl~q~~-----p---~~s~~~ik~~L~~TA~ 567 (745)
|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 249 GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 249 GTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999999999999985 4 6677899999999985
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-41 Score=350.65 Aligned_cols=240 Identities=31% Similarity=0.423 Sum_probs=192.3
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCCc
Q 042259 145 VIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGAN 224 (745)
Q Consensus 145 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~ 224 (745)
|+|||||+|||++||+|.+.. ++...+++.....+..|..+|||||||||+|+..+.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~~~-- 57 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP---------------------KLVPGWNFVSNNDPTSDIDGHGTACAGVAAAVGNNG-- 57 (242)
T ss_pred CEEEEecCCCCCCChhhccCc---------------------CccCCccccCCCCCCCCCCCCHHHHHHHHHhccCCC--
Confidence 689999999999999998630 112223333332345778999999999999875321
Q ss_pred ccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCC-CChhhHHHHHHHHHhc-CCc
Q 042259 225 LFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSL-PFFADAMATAAFTASQ-KGI 302 (745)
Q Consensus 225 ~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~-~~~~~~~~~a~~~a~~-~Gi 302 (745)
..+.||||+|+|+.+|++.....+...++.++++|+++.+++|||||||.... ......+..++..+.+ +|+
T Consensus 58 ------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~gv 131 (242)
T cd07498 58 ------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGG 131 (242)
T ss_pred ------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcCCe
Confidence 22589999999999999983334778889999999999999999999998653 3445667777777888 999
Q ss_pred EEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCC
Q 042259 303 LVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLP 382 (745)
Q Consensus 303 ~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 382 (745)
++|+||||+|......++..+++|+||+.+.
T Consensus 132 liv~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------------------------------------- 162 (242)
T cd07498 132 VVLFAAGNSGRSVSSGYAANPSVIAVAATDS------------------------------------------------- 162 (242)
T ss_pred EEEEecCCCCCccCCCCcCCCCeEEEEEeCC-------------------------------------------------
Confidence 9999999999887777889999999999531
Q ss_pred CCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCC
Q 042259 383 ETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSP 462 (745)
Q Consensus 383 ~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 462 (745)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHH
Q 042259 463 TASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGI 542 (745)
Q Consensus 463 ~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 542 (745)
.+.+++||++||.. |++|||+++...............+.|..++|||||||+|||+
T Consensus 163 ---------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~ 219 (242)
T cd07498 163 ---------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAGV 219 (242)
T ss_pred ---------------CCCccCcCCCCCCe--------EEEeCcCCcccCCccccccccCCCCceEeeCcHHHHHHHHHHH
Confidence 12567899999987 9999999998885442211222336788999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHhcc
Q 042259 543 AALLKSAHPDWSPAAIKSAIMTT 565 (745)
Q Consensus 543 aALl~q~~p~~s~~~ik~~L~~T 565 (745)
+|||+|++|+|++++||++|++|
T Consensus 220 ~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 220 AALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999976
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-41 Score=358.81 Aligned_cols=265 Identities=30% Similarity=0.390 Sum_probs=187.2
Q ss_pred cCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhc
Q 042259 137 KDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAA 216 (745)
Q Consensus 137 ~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiia 216 (745)
..+++|+||+|+|||+|||.+||+|.+... ...+|.+. ....|..+|||||||||+
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~-----------------------~~~~~~~~-~~~~d~~gHGT~VAgiia 57 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI-----------------------TTKSFVGG-EDVQDGHGHGTHCAGTIF 57 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc-----------------------cCcccCCC-CCCCCCCCcHHHHHHHHh
Confidence 357899999999999999999999986421 22344433 335678999999999999
Q ss_pred ccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCC----------CCh
Q 042259 217 GNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSL----------PFF 286 (745)
Q Consensus 217 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~----------~~~ 286 (745)
|+..+ +...||||+|+|+.+|++..........++++|+|+++.+++|||||||.... ...
T Consensus 58 g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~ 128 (297)
T cd07480 58 GRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAF 128 (297)
T ss_pred cccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCchh
Confidence 87533 22369999999999999873445777789999999999999999999998541 111
Q ss_pred hhHHHHHHHHH---------------hcCCcEEEEccCCCCCCCCCcc-----cCCCceEEEeecccccceEEEEEeCCC
Q 042259 287 ADAMATAAFTA---------------SQKGILVSCSAGNSGPNSSTLA-----NEAPWMLTVGASTIDRSIVALTQLGNQ 346 (745)
Q Consensus 287 ~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~vitVga~~~~~~~~~~~~~~~~ 346 (745)
...+......+ .++|+++|+||||++....... ...++.++|++..
T Consensus 129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~-------------- 194 (297)
T cd07480 129 SRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVG-------------- 194 (297)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEEC--------------
Confidence 22222222223 6899999999999986543221 1122333333311
Q ss_pred eeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCC
Q 042259 347 ETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDE 426 (745)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 426 (745)
T Consensus 195 -------------------------------------------------------------------------------- 194 (297)
T cd07480 195 -------------------------------------------------------------------------------- 194 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCc
Q 042259 427 LFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGV 506 (745)
Q Consensus 427 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~ 506 (745)
..+....|+++.+. ...||||+|||.
T Consensus 195 --------------------------------------------------~~~~~~~~~~~~~~----~~~~~dv~ApG~ 220 (297)
T cd07480 195 --------------------------------------------------ALGRTGNFSAVANF----SNGEVDIAAPGV 220 (297)
T ss_pred --------------------------------------------------CCCCCCCccccCCC----CCCceEEEeCCC
Confidence 00122233333332 245789999999
Q ss_pred cEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCC
Q 042259 507 SILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADL 586 (745)
Q Consensus 507 ~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 586 (745)
+|+++.+. +.|..++|||||||+|||++||++|++|++++.+++.+|+......... . .......
T Consensus 221 ~i~s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~-~-----~~~~~~~ 285 (297)
T cd07480 221 DIVSAAPG---------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTT-Q-----FAPGLDL 285 (297)
T ss_pred CeEeecCC---------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccC-C-----CCCCCCh
Confidence 99999887 7899999999999999999999999999999888888877432221000 0 0112456
Q ss_pred cccCCCCCCcc
Q 042259 587 FAVGAGHVNPS 597 (745)
Q Consensus 587 ~~~G~G~vn~~ 597 (745)
..+|+|++++.
T Consensus 286 ~~~g~G~~~~~ 296 (297)
T cd07480 286 PDRGVGLGLAP 296 (297)
T ss_pred hhcCCceeecC
Confidence 68999999875
No 28
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.5e-40 Score=340.23 Aligned_cols=225 Identities=38% Similarity=0.584 Sum_probs=187.0
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC-CCCCCCCCChhhhhhhhcccccCC
Q 042259 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS-EPPIDNDGHGTHTASTAAGNFVNG 222 (745)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~-~~~~d~~gHGThVAGiiag~~~~~ 222 (745)
||+|+|||+||+++||+|.+. +...++|.... ....|..+|||||||||++.....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~-----------------------~~~~~~~~~~~~~~~~~~~~HGT~vA~ii~~~~~~~ 57 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN-----------------------IVGGANFTGDDNNDYQDGNGHGTHVAGIIAALDNGV 57 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc-----------------------ccCcccccCCCCCCCCCCCCCHHHHHHHHhcccCCC
Confidence 799999999999999999864 22233444332 345678899999999999875321
Q ss_pred CcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCC
Q 042259 223 ANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKG 301 (745)
Q Consensus 223 ~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~G 301 (745)
.+.|+||+|+|+.+|+++ ..+ ....+++++++++++.+++|||||||.... ...+..++..+.++|
T Consensus 58 ---------~~~giap~a~i~~~~~~~-~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~---~~~~~~~~~~a~~~g 124 (229)
T cd07477 58 ---------GVVGVAPEADLYAVKVLN-DDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD---SPALREAIKKAYAAG 124 (229)
T ss_pred ---------ccEeeCCCCEEEEEEEEC-CCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC---CHHHHHHHHHHHHCC
Confidence 248999999999999998 544 677899999999999999999999998642 233445555788999
Q ss_pred cEEEEccCCCCCCCCCc--ccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCc
Q 042259 302 ILVSCSAGNSGPNSSTL--ANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAF 379 (745)
Q Consensus 302 i~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (745)
+++|+||||++...... ++..+++|+||+.+.
T Consensus 125 iliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~---------------------------------------------- 158 (229)
T cd07477 125 ILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS---------------------------------------------- 158 (229)
T ss_pred CEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC----------------------------------------------
Confidence 99999999999887665 888999999999531
Q ss_pred cCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcC
Q 042259 380 CLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINST 459 (745)
Q Consensus 380 c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 459 (745)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHH
Q 042259 460 SSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHL 539 (745)
Q Consensus 460 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~V 539 (745)
.+.+..||++|+.. |++|||.+|+++++. +.|..++|||||||+|
T Consensus 159 ------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap~v 203 (229)
T cd07477 159 ------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPN---------NDYAYLSGTSMATPHV 203 (229)
T ss_pred ------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCC---------CCEEEEccHHHHHHHH
Confidence 12556899999876 999999999999887 7889999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHhcc
Q 042259 540 SGIAALLKSAHPDWSPAAIKSAIMTT 565 (745)
Q Consensus 540 AG~aALl~q~~p~~s~~~ik~~L~~T 565 (745)
||++|||+|++|++++.+||++|++|
T Consensus 204 ag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 204 AGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999986
No 29
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-40 Score=347.82 Aligned_cols=243 Identities=22% Similarity=0.257 Sum_probs=176.9
Q ss_pred CCCccCCC-CCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhh
Q 042259 133 SGFWKDSN-LGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHT 211 (745)
Q Consensus 133 ~~~~~~~~-~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThV 211 (745)
..+|+... .|+||+|+|||+|||.+||||.++.... .+ . ..+.|+.+|||||
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~-----------------------~~---~-~~~~d~~gHGT~V 57 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL-----------------------IS---G-LTDQADSDHGTAV 57 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc-----------------------cC---C-CCCCCCCCCcchh
Confidence 45888743 5899999999999999999998652210 00 0 1246788999999
Q ss_pred hhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh----CCCcEEEEccCCCCCC---
Q 042259 212 ASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE----EGVDVLSISLGSPSLP--- 284 (745)
Q Consensus 212 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~----~g~dVIn~S~G~~~~~--- 284 (745)
||||+|.. +..| +.||||+|+|+.+|++. .++++++|.+|++ .++.+||||||.....
T Consensus 58 AGiIaa~~--------n~~G-~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~~~ 122 (277)
T cd04843 58 LGIIVAKD--------NGIG-VTGIAHGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLEMQTGGPNNGYPP 122 (277)
T ss_pred heeeeeec--------CCCc-eeeeccCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCccc
Confidence 99999863 1223 47999999999999985 2345666666666 3567899999986421
Q ss_pred ---ChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCc------------c-cCCCceEEEeecccccceEEEEEeCCCee
Q 042259 285 ---FFADAMATAAFTASQKGILVSCSAGNSGPNSSTL------------A-NEAPWMLTVGASTIDRSIVALTQLGNQET 348 (745)
Q Consensus 285 ---~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~-~~~p~vitVga~~~~~~~~~~~~~~~~~~ 348 (745)
.....+..++.++.++|+++|+||||++...... + ...+++|+|||++.+
T Consensus 123 ~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~-------------- 188 (277)
T cd04843 123 LPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST-------------- 188 (277)
T ss_pred CcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC--------------
Confidence 2334555667788899999999999998753211 1 123467777764210
Q ss_pred eeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCC
Q 042259 349 YDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELF 428 (745)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 428 (745)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccE
Q 042259 429 DYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSI 508 (745)
Q Consensus 429 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I 508 (745)
....++.||++||.. ||+|||++|
T Consensus 189 ------------------------------------------------~~~~~~~fSn~G~~v--------di~APG~~i 212 (277)
T cd04843 189 ------------------------------------------------TGHTRLAFSNYGSRV--------DVYGWGENV 212 (277)
T ss_pred ------------------------------------------------CCCccccccCCCCcc--------ceEcCCCCe
Confidence 001378999999987 999999999
Q ss_pred EeccCCCCc-cCCCcccceeeeccccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHhcccc
Q 042259 509 LAAWPFSEE-NITNTKSTFTMISGTSMSCPHLSGIAALLKS----A-HPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 509 ~sa~~~~~~-~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~~s~~~ik~~L~~TA~ 567 (745)
+++.+.... ........|..++|||||||||||++|||++ + +|+|+++|||++|+.|++
T Consensus 213 ~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 213 TTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred EecCCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999876331 1111123457899999999999999999975 3 499999999999999974
No 30
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.1e-40 Score=343.44 Aligned_cols=246 Identities=34% Similarity=0.479 Sum_probs=191.3
Q ss_pred CccEEEEecCCCCCCCCCCCCCCCCCCCCccccc---cccCCcccCcce---eeeeeCCCCCCCCCCCCCChhhhhhhhc
Q 042259 143 KGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGK---CELEGANCNNKI---IGARNFLNKSEPPIDNDGHGTHTASTAA 216 (745)
Q Consensus 143 ~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~---~~~~~~~~n~ki---~~~~~~~~~~~~~~d~~gHGThVAGiia 216 (745)
+||+|+|||||||++||+|.++. |... +..+........ ...++|.....++.|..+|||||||||+
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~va~ii~ 74 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNM-------WVNPGEIPGNGIDDDGNGYVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIG 74 (259)
T ss_pred CCCEEEEEeCCCCCCChhhcccc-------ccCcccccccCcccCCCCcccCCCcccccCCCCCCCCCCCcHHHHHHHHH
Confidence 68999999999999999999752 2211 111100001111 1223343333566788999999999999
Q ss_pred ccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHH
Q 042259 217 GNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAF 295 (745)
Q Consensus 217 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~ 295 (745)
|...+. ..+.|+||+|+|+.+|++. ..+ +...+++++++++++.+++|||+|||.... ...+..++.
T Consensus 75 ~~~~~~--------~~~~GvAp~a~l~~~~~~~-~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~---~~~~~~~~~ 142 (259)
T cd07473 75 AVGNNG--------IGIAGVAWNVKIMPLKFLG-ADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP---SQALRDAIA 142 (259)
T ss_pred CcCCCC--------CceEEeCCCCEEEEEEEeC-CCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---CHHHHHHHH
Confidence 885332 2258999999999999998 554 888899999999999999999999998743 455666666
Q ss_pred HHhcCCcEEEEccCCCCCCC---CCccc--CCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEec
Q 042259 296 TASQKGILVSCSAGNSGPNS---STLAN--EAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYP 370 (745)
Q Consensus 296 ~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (745)
++.++|+++|+||||+|... ..++. ..+++|+||+.+
T Consensus 143 ~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~-------------------------------------- 184 (259)
T cd07473 143 RAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD-------------------------------------- 184 (259)
T ss_pred HHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC--------------------------------------
Confidence 88899999999999998763 23443 457888888842
Q ss_pred CCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHH
Q 042259 371 GVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGE 450 (745)
Q Consensus 371 ~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~ 450 (745)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeec
Q 042259 451 RIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMIS 530 (745)
Q Consensus 451 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~s 530 (745)
..+.++.||++||. +||++|||.++++..+. ..|..++
T Consensus 185 --------------------------~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~---------~~~~~~~ 222 (259)
T cd07473 185 --------------------------SNDALASFSNYGKK-------TVDLAAPGVDILSTSPG---------GGYGYMS 222 (259)
T ss_pred --------------------------CCCCcCcccCCCCC-------CcEEEeccCCeEeccCC---------CcEEEec
Confidence 11255679999985 45999999999998776 7899999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 531 GTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 531 GTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 223 GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 223 GTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999985
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-40 Score=341.56 Aligned_cols=209 Identities=24% Similarity=0.296 Sum_probs=166.0
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC-------CCCCCCCCChhhhhhh
Q 042259 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS-------EPPIDNDGHGTHTAST 214 (745)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~-------~~~~d~~gHGThVAGi 214 (745)
+++|+|||||||||++||+|.++- ...++|.... ....|..|||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i-----------------------~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgi 58 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKI-----------------------IGGKSFSPYEGDGNKVSPYYVSADGHGTAMARM 58 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccc-----------------------ccCCCCCCCCCCcccCCCCCCCCCCcHHHHHHH
Confidence 789999999999999999998641 1122222110 1224688999999999
Q ss_pred hcccccCCCcccCCCCcceeeeccCceEEeeecccCCC------CCCHHHHHHHHHHHHhCCCcEEEEccCCCCCC---C
Q 042259 215 AAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDL------GCPESIVNAAIDAAVEEGVDVLSISLGSPSLP---F 285 (745)
Q Consensus 215 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~------g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~---~ 285 (745)
|+ |+||+|+|+.+|+++... .++...+++||+||+++|+||||||||..... .
T Consensus 59 I~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~ 120 (247)
T cd07491 59 IC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDN 120 (247)
T ss_pred HH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccccccc
Confidence 96 789999999999998322 24667899999999999999999999986431 1
Q ss_pred hhhHHHHHHHHHhcCCcEEEEccCCCCCCCC-C--cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCC
Q 042259 286 FADAMATAAFTASQKGILVSCSAGNSGPNSS-T--LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPS 362 (745)
Q Consensus 286 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (745)
....+..++.+|.++|+++|+||||+|.... . .+...+++|+|||.+.
T Consensus 121 ~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~----------------------------- 171 (247)
T cd07491 121 DINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE----------------------------- 171 (247)
T ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC-----------------------------
Confidence 2566777777899999999999999998764 3 3467789999999531
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEE
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAV 442 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 442 (745)
T Consensus 172 -------------------------------------------------------------------------------- 171 (247)
T cd07491 172 -------------------------------------------------------------------------------- 171 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCc
Q 042259 443 YVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNT 522 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~ 522 (745)
.+.++.||++|+.. |++|||++|+++.+.. .
T Consensus 172 -----------------------------------~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~------~ 202 (247)
T cd07491 172 -----------------------------------DGGADAPVGDEDRV--------DYILPGENVEARDRPP------L 202 (247)
T ss_pred -----------------------------------CCCCccccCCCCcc--------eEEeCCCceecCCcCC------C
Confidence 12567899999887 9999999999987621 1
Q ss_pred ccceeeeccccchhHHHHHHHHHHHhh
Q 042259 523 KSTFTMISGTSMSCPHLSGIAALLKSA 549 (745)
Q Consensus 523 ~~~y~~~sGTSmAaP~VAG~aALl~q~ 549 (745)
.+.|..++|||||||||||++||+++.
T Consensus 203 ~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 203 SNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 167999999999999999999999974
No 32
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=7.7e-41 Score=353.48 Aligned_cols=271 Identities=38% Similarity=0.576 Sum_probs=209.7
Q ss_pred EEEEecCCCCCCCCCCC-CCCCCCCCCccccccccCCcccCcceeeeeeCCCCC---CCCCCCCCChhhhhhhhcccccC
Q 042259 146 IIGVLDMGITPGHPSFS-DEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS---EPPIDNDGHGTHTASTAAGNFVN 221 (745)
Q Consensus 146 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~---~~~~d~~gHGThVAGiiag~~~~ 221 (745)
+|||||||||++||+|. ++ + ...++.+.+.|.++. ....|..+|||||||||+|.. .
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~-~ 61 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F-----------------IWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG-G 61 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E-----------------EEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-S
T ss_pred CEEEEcCCcCCCChhHccCC-c-----------------ccccccceeeccCCCCCcCccccCCCccchhhhhccccc-c
Confidence 69999999999999998 32 1 122344466666542 445678899999999999985 2
Q ss_pred CCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHH-hCCCcEEEEccCC--CC-CCChhhHHHHHHHHH
Q 042259 222 GANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAV-EEGVDVLSISLGS--PS-LPFFADAMATAAFTA 297 (745)
Q Consensus 222 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~-~~g~dVIn~S~G~--~~-~~~~~~~~~~a~~~a 297 (745)
.+ ...+.|+||+|+|+.+|++. ..+.....+++++++++ +++++|||||||. .. .....+.+..+...+
T Consensus 62 -~~-----~~~~~Gva~~a~l~~~~i~~-~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~ 134 (282)
T PF00082_consen 62 -NN-----GPGINGVAPNAKLYSYKIFD-NSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYA 134 (282)
T ss_dssp -SS-----SSSETCSSTTSEEEEEECSS-TTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHH
T ss_pred -cc-----cccccccccccccccccccc-ccccccccccchhhhhhhccCCccccccccccccccccccccccccccccc
Confidence 11 11247999999999999988 55577888999999999 8999999999987 22 223444555666688
Q ss_pred hcCCcEEEEccCCCCCCCCC---cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCC
Q 042259 298 SQKGILVSCSAGNSGPNSST---LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKN 374 (745)
Q Consensus 298 ~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (745)
.++|+++|+||||+|..... .+...+++|+||+...
T Consensus 135 ~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~----------------------------------------- 173 (282)
T PF00082_consen 135 EKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN----------------------------------------- 173 (282)
T ss_dssp HHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET-----------------------------------------
T ss_pred cccCcceeecccccccccccccccccccccccccccccc-----------------------------------------
Confidence 89999999999999877653 5666788899998421
Q ss_pred CCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHH
Q 042259 375 SSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKA 454 (745)
Q Consensus 375 ~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 454 (745)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccc
Q 042259 455 YINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSM 534 (745)
Q Consensus 455 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSm 534 (745)
.+.++.||++|+... ++++||||+|||.+|.+.++... ...|..++||||
T Consensus 174 -----------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~------~~~~~~~~GTS~ 223 (282)
T PF00082_consen 174 -----------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSD------RGSYTSFSGTSF 223 (282)
T ss_dssp -----------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTE------SEEEEEEESHHH
T ss_pred -----------------------ccccccccccccccc-ccccccccccccccccccccccc------cccccccCcCCc
Confidence 115578999975542 68999999999999988887621 034788999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259 535 SCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND 601 (745)
Q Consensus 535 AaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 601 (745)
|||+|||++|||+|++|++++.+||.+|++||+++...+ .......||||+||+++|++
T Consensus 224 Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 224 AAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHHhC
Confidence 999999999999999999999999999999999886221 23456688999999999874
No 33
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-39 Score=328.49 Aligned_cols=222 Identities=26% Similarity=0.362 Sum_probs=172.9
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCC
Q 042259 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGA 223 (745)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~ 223 (745)
||+|||||||||++||+|.++... ++ .... ..+..+.....|..||||||||||++
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~-----~~------------~~~~-~~~~~~~~~~~d~~gHGT~vAgiia~------ 56 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD-----GE------------VTID-LEIIVVSAEGGDKDGHGTACAGIIKK------ 56 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc-----cc------------cccc-cccccCCCCCCCCCCcHHHHHHHHHc------
Confidence 799999999999999999864211 00 0000 01112224556789999999999984
Q ss_pred cccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCCcE
Q 042259 224 NLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGIL 303 (745)
Q Consensus 224 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi~ 303 (745)
.+|+++|+.+|+++....+....+++|++|+++++++|||||||..... ....+..++.++.++|++
T Consensus 57 ------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~~~~a~~~g~l 123 (222)
T cd07492 57 ------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKELLEYAYKAGGI 123 (222)
T ss_pred ------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHHHHHHHHCCCE
Confidence 4699999999999833347888999999999999999999999987532 223455566678888999
Q ss_pred EEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCC
Q 042259 304 VSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPE 383 (745)
Q Consensus 304 vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 383 (745)
+|+||||++.... .++..+++|+||+...+.
T Consensus 124 ~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------------------------ 154 (222)
T cd07492 124 IVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------------------------ 154 (222)
T ss_pred EEEECCCCCCCCC-CCccCCceEEEEecCCCC------------------------------------------------
Confidence 9999999986543 377788999998842110
Q ss_pred CCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCe
Q 042259 384 TLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPT 463 (745)
Q Consensus 384 ~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 463 (745)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccchhHHHHHHH
Q 042259 464 ASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIA 543 (745)
Q Consensus 464 ~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 543 (745)
.. +.+++ ++|++|||.+|+++.+. +.|..++|||||||+|||++
T Consensus 155 ----------------~~---~~~~~--------~~~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap~vaG~~ 198 (222)
T cd07492 155 ----------------PK---SFWYI--------YVEFSADGVDIIAPAPH---------GRYLTVSGNSFAAPHVTGMV 198 (222)
T ss_pred ----------------Cc---ccccC--------CceEEeCCCCeEeecCC---------CCEEEeccHHHHHHHHHHHH
Confidence 00 11132 34999999999999887 78999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHhcccc
Q 042259 544 ALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 544 ALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
|||+|++|+|+++|||++|++||+
T Consensus 199 All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 199 ALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHhCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999985
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=9.5e-40 Score=347.65 Aligned_cols=246 Identities=24% Similarity=0.319 Sum_probs=179.4
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC--CCCC--CCCCC
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS--EPPI--DNDGH 207 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~--~~~~--d~~gH 207 (745)
...+|+.+++|+||+|+|||||||++||+|.++.... ..++|.... ..+. |..+|
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~gH 86 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPE---------------------ASYDFNDNDPDPTPRYDDDNSH 86 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhccccc---------------------ccccccCCCCCCCCcccccccc
Confidence 4569999999999999999999999999998652210 122232221 1222 77899
Q ss_pred hhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCC---
Q 042259 208 GTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLP--- 284 (745)
Q Consensus 208 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~--- 284 (745)
||||||||+|+..... ...||||+|+|+.+|++. .. .....+..++.++.+ .++|||||||.....
T Consensus 87 GT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~ 155 (297)
T cd04059 87 GTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLD-GD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTV 155 (297)
T ss_pred CcceeeEEEeecCCCc--------ccccccccceEeEEEecC-Cc-cccHHHHHHHhcccC-CceEEECCCCCCCCCCcc
Confidence 9999999998853211 137999999999999998 43 333445556655544 469999999976422
Q ss_pred -----ChhhHHHHHHHHHhc-CCcEEEEccCCCCCCCCC----cccCCCceEEEeecccccceEEEEEeCCCeeeeeeec
Q 042259 285 -----FFADAMATAAFTASQ-KGILVSCSAGNSGPNSST----LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETI 354 (745)
Q Consensus 285 -----~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~ 354 (745)
...+++..++....+ +|+++|+||||+|..... .....+++|+|||++.
T Consensus 156 ~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~--------------------- 214 (297)
T cd04059 156 DGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA--------------------- 214 (297)
T ss_pred CCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC---------------------
Confidence 122233333222222 799999999999984322 2245678899988421
Q ss_pred cCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccc
Q 042259 355 FQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVA 434 (745)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 434 (745)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCcc-------
Q 042259 435 DNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVS------- 507 (745)
Q Consensus 435 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~------- 507 (745)
.+.++.||++|+.. +++|||..
T Consensus 215 -------------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~ 243 (297)
T cd04059 215 -------------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPEAS 243 (297)
T ss_pred -------------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCCCc
Confidence 12667899999987 89999987
Q ss_pred EEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 508 ILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 508 I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
|+++.... ....|..++|||||||+|||++|||+|++|+|++.|||.+|++||+
T Consensus 244 i~~~~~~~------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 244 IVTTDLGG------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred eEeCCCCC------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66665541 0156788999999999999999999999999999999999999985
No 35
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=5.6e-39 Score=341.33 Aligned_cols=249 Identities=27% Similarity=0.368 Sum_probs=173.8
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccCCC
Q 042259 144 GVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVNGA 223 (745)
Q Consensus 144 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~ 223 (745)
.|+|||||||||++||+|.++-..... .+ ...+. ..- .......+.....|..||||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~-~~---~~~~~----~~~-~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~--- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSK-NL---VPKGG----YDG-KEAGETGDINDIVDKLGHGTAVAGQIAANGN--- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccccc-cc---ccCCC----cCC-ccccccCCCCcCCCCCCcHhHHHHHHhcCCC---
Confidence 489999999999999999963211100 00 00000 000 0000001113345778999999999998632
Q ss_pred cccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCC--------ChhhHHHHHH
Q 042259 224 NLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLP--------FFADAMATAA 294 (745)
Q Consensus 224 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~--------~~~~~~~~a~ 294 (745)
..||||+|+|+.+|+++ ..+ ....+++++|++|++++++|||||||..... ...+.+..++
T Consensus 69 ---------~~GvAp~a~i~~~~v~~-~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i 138 (294)
T cd07482 69 ---------IKGVAPGIGIVSYRVFG-SCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAI 138 (294)
T ss_pred ---------CceeCCCCEEEEEEeec-CCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHH
Confidence 15999999999999998 555 5888999999999999999999999975321 1224456666
Q ss_pred HHHhcCCcEEEEccCCCCCCCCC----------------------cccCCCceEEEeecccccceEEEEEeCCCeeeeee
Q 042259 295 FTASQKGILVSCSAGNSGPNSST----------------------LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGE 352 (745)
Q Consensus 295 ~~a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~ 352 (745)
..+.++|++||+||||+|..... .+...+++|+|||+
T Consensus 139 ~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~--------------------- 197 (294)
T cd07482 139 NYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSAT--------------------- 197 (294)
T ss_pred HHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEee---------------------
Confidence 67788999999999999865421 12233344444442
Q ss_pred eccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc
Q 042259 353 TIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT 432 (745)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 432 (745)
T Consensus 198 -------------------------------------------------------------------------------- 197 (294)
T cd07482 198 -------------------------------------------------------------------------------- 197 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEecc
Q 042259 433 VADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAW 512 (745)
Q Consensus 433 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~ 512 (745)
...+.++.||++|+.. +|++|||+++....
T Consensus 198 -------------------------------------------~~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~ 227 (294)
T cd07482 198 -------------------------------------------DNNGNLSSFSNYGNSR-------IDLAAPGGDFLLLD 227 (294)
T ss_pred -------------------------------------------CCCCCcCccccCCCCc-------ceEECCCCCccccc
Confidence 2233677899998754 49999999885322
Q ss_pred CCCC---c----------cCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHhcc
Q 042259 513 PFSE---E----------NITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSP-AAIKSAIMTT 565 (745)
Q Consensus 513 ~~~~---~----------~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~-~~ik~~L~~T 565 (745)
.... . ......+.|..++|||||||+|||++|||+|++|.+++ .|||++|++|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 228 QYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 1111 0 01133467889999999999999999999999999999 9999999986
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=4.6e-38 Score=329.39 Aligned_cols=242 Identities=27% Similarity=0.330 Sum_probs=186.0
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhccccc
Q 042259 141 LGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFV 220 (745)
Q Consensus 141 ~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~ 220 (745)
+|+||+|+|||+||+.+||+|.+.........+ ..........|..+|||||||+|+|+..
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~HGT~vagiiag~~~ 61 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYVA-------------------VNDAGYASNGDGDSHGTHVAGVIAAARD 61 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccccc-------------------cccccCCCCCCCCChHHHHHHHHhcCcC
Confidence 699999999999999999999975322100000 0000113456788999999999999853
Q ss_pred CCCcccCCCCcceeeeccCceEEeeecccCCC--CCCHHHHHHHHHHHHhCCCcEEEEccCCCCCC------------Ch
Q 042259 221 NGANLFGQANGTAAGMAPLAHLAIYKVCETDL--GCPESIVNAAIDAAVEEGVDVLSISLGSPSLP------------FF 286 (745)
Q Consensus 221 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~--g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~------------~~ 286 (745)
+ ..+.|+||+|+|+.+|+++ .. ......+.++++++++.+++|||||||..... ..
T Consensus 62 ~---------~~~~GiAp~a~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~ 131 (267)
T cd04848 62 G---------GGMHGVAPDATLYSARASA-SAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQ 131 (267)
T ss_pred C---------CCcccCCcCCEEEEEeccC-CCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhcccc
Confidence 3 2248999999999999998 44 36677889999999999999999999987522 14
Q ss_pred hhHHHHHHHHHhcCCcEEEEccCCCCCCCCCc---------ccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCC
Q 042259 287 ADAMATAAFTASQKGILVSCSAGNSGPNSSTL---------ANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQP 357 (745)
Q Consensus 287 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (745)
...+......+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 132 ~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~---------------------- 189 (267)
T cd04848 132 GNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG---------------------- 189 (267)
T ss_pred chHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC----------------------
Confidence 45566666788899999999999998764433 23457888888853211
Q ss_pred CCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCc
Q 042259 358 KDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNH 437 (745)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 437 (745)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceec--ccCCCCCCCCCCCccCceEeCCccEEeccCCC
Q 042259 438 VLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAV--FSSRGPNTASPGILKPDIIGPGVSILAAWPFS 515 (745)
Q Consensus 438 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~ 515 (745)
.... ||++|+.. ..++++|||.+|+++.+..
T Consensus 190 ------------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~ 222 (267)
T cd04848 190 ------------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG 222 (267)
T ss_pred ------------------------------------------Ccccccccccchhh-----hhheeecCcCceeecccCC
Confidence 2223 48888654 2447999999999998731
Q ss_pred CccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259 516 EENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAD 567 (745)
Q Consensus 516 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 567 (745)
. ..|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 223 ~-------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 223 G-------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred C-------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 1 67889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=328.63 Aligned_cols=368 Identities=24% Similarity=0.320 Sum_probs=267.1
Q ss_pred CCCCceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeC-----HHHHHHhhc
Q 042259 29 ANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLT-----AEEVKAMET 103 (745)
Q Consensus 29 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~-----~~~~~~L~~ 103 (745)
.-.+.+|||.|+.... +..++..+++-|+...-.....-.....-..|-..|.-+-++-. .-++++|..
T Consensus 46 tvve~EyIv~F~~y~~------Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~ 119 (1033)
T KOG4266|consen 46 TVVESEYIVRFKQYKP------AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEM 119 (1033)
T ss_pred eeecceeEEEeccccc------chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhc
Confidence 3356789999998876 45566666666653211100001112223345455655555443 235789999
Q ss_pred CCCeEEEEEccccCCCCC------------CC------------------CCccCcc------------CCCCCccCCCC
Q 042259 104 KSGFISARVENILEPQTT------------HS------------------PNFLGLH------------QNSGFWKDSNL 141 (745)
Q Consensus 104 ~p~V~~v~~~~~~~~~~~------------~s------------------~~~~g~~------------~~~~~~~~~~~ 141 (745)
+|.|+.|.|.+.+.+... .. +--|+-. .++-+|+.|+|
T Consensus 120 hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyT 199 (1033)
T KOG4266|consen 120 HPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYT 199 (1033)
T ss_pred CCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhcccc
Confidence 999999998876643100 00 0001100 03458999999
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcccccC
Q 042259 142 GKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAGNFVN 221 (745)
Q Consensus 142 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 221 (745)
|++|+|||.|||+.-+||.|+.- ....++.+. ..-.|.-||||.|||+|||...
T Consensus 200 Ga~VkvAiFDTGl~~~HPHFrnv------------------------KERTNWTNE-~tLdD~lgHGTFVAGvia~~~e- 253 (1033)
T KOG4266|consen 200 GAKVKVAIFDTGLRADHPHFRNV------------------------KERTNWTNE-DTLDDNLGHGTFVAGVIAGRNE- 253 (1033)
T ss_pred CCceEEEEeecccccCCccccch------------------------hhhcCCcCc-cccccCcccceeEeeeeccchh-
Confidence 99999999999999999999831 112233333 4556789999999999998841
Q ss_pred CCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCC
Q 042259 222 GANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKG 301 (745)
Q Consensus 222 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~G 301 (745)
..|.||+++|+++||+.+..-.+++.+++|+.||+....||+|+|+|++. +++.++-..+.......
T Consensus 254 -----------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD--fmD~PFVeKVwEltAnN 320 (1033)
T KOG4266|consen 254 -----------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD--FMDLPFVEKVWELTANN 320 (1033)
T ss_pred -----------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc--cccchHHHHHHhhccCc
Confidence 26999999999999998344488899999999999999999999999974 44455555555778899
Q ss_pred cEEEEccCCCCCCCCCcccCC--CceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCc
Q 042259 302 ILVSCSAGNSGPNSSTLANEA--PWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAF 379 (745)
Q Consensus 302 i~vV~AAGN~g~~~~~~~~~~--p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (745)
+++|.|+||+|+-.++..+.+ ..+|.||.
T Consensus 321 vIMvSAiGNDGPLYGTLNNPaDQsDViGVGG------------------------------------------------- 351 (1033)
T KOG4266|consen 321 VIMVSAIGNDGPLYGTLNNPADQSDVIGVGG------------------------------------------------- 351 (1033)
T ss_pred EEEEEecCCCCcceeecCCcccccceeeecc-------------------------------------------------
Confidence 999999999999877765533 33444443
Q ss_pred cCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcC
Q 042259 380 CLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINST 459 (745)
Q Consensus 380 c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 459 (745)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEecceEecCCCCCceecccCCCCCC----CCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccch
Q 042259 460 SSPTASIVFKGTVIGKKSAPEVAVFSSRGPNT----ASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSMS 535 (745)
Q Consensus 460 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~----~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 535 (745)
.+..+.+|.|||||-+. ...||+||||++-|.+|....-. .+....||||.|
T Consensus 352 ---------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~---------~GCr~LSGTSVa 407 (1033)
T KOG4266|consen 352 ---------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS---------TGCRSLSGTSVA 407 (1033)
T ss_pred ---------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc---------ccchhccCCccc
Confidence 12335899999999753 23589999999999999877665 678899999999
Q ss_pred hHHHHHHHHHHHh----hCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCCCCccc
Q 042259 536 CPHLSGIAALLKS----AHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVY 606 (745)
Q Consensus 536 aP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~lv~ 606 (745)
+|.|||+++||.+ +.--+.|+.+|++|+..|.+++.. .-+.||+|++|+.++++--.-|
T Consensus 408 SPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------NMfEQGaGkldLL~syqiL~SY 470 (1033)
T KOG4266|consen 408 SPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------NMFEQGAGKLDLLESYQILKSY 470 (1033)
T ss_pred chhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------chhhccCcchhHHHHHHHHHhc
Confidence 9999999999975 334468999999999999998653 3478999999999887733333
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-35 Score=325.51 Aligned_cols=238 Identities=28% Similarity=0.391 Sum_probs=181.0
Q ss_pred CCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC--CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 042259 205 DGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG--CPESIVNAAIDAAVEEGVDVLSISLGSPS 282 (745)
Q Consensus 205 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVIn~S~G~~~ 282 (745)
..||||||||++|+..+... ..||||+|+|+++++.+..-| -+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 45999999999999755322 479999999999999884334 34557889999999999999999999765
Q ss_pred -CCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCccc---CCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCC
Q 042259 283 -LPFFADAMATAAFTASQKGILVSCSAGNSGPNSSTLAN---EAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPK 358 (745)
Q Consensus 283 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (745)
-+.....++..-....++|+++|.||||.|+...+++. ....+|.|||.-......
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~-------------------- 441 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ-------------------- 441 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH--------------------
Confidence 33344444444444558999999999999999877663 455888888831111000
Q ss_pred CCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCcc
Q 042259 359 DFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHV 438 (745)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 438 (745)
T Consensus 442 -------------------------------------------------------------------------------- 441 (1304)
T KOG1114|consen 442 -------------------------------------------------------------------------------- 441 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCcc
Q 042259 439 LPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEEN 518 (745)
Q Consensus 439 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~ 518 (745)
...... ..-...+..+|||||+. ||-+--.|+|||+.|.+ .|.+..
T Consensus 442 ------------a~y~~~------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAs-VP~~tl- 487 (1304)
T KOG1114|consen 442 ------------AEYSVR------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIAS-VPQYTL- 487 (1304)
T ss_pred ------------hhhhhh------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccC-Cchhhh-
Confidence 000000 01123578899999999 89999999999999955 343221
Q ss_pred CCCcccceeeeccccchhHHHHHHHHHHH----hhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCC
Q 042259 519 ITNTKSTFTMISGTSMSCPHLSGIAALLK----SAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHV 594 (745)
Q Consensus 519 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~----q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~v 594 (745)
..-..|.|||||+|+++|.+|||+ |.+-.|||..||.+|++||+++++. .+|.||.|++
T Consensus 488 -----q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------d~faqG~Gml 550 (1304)
T KOG1114|consen 488 -----QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------DSFAQGQGML 550 (1304)
T ss_pred -----hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc------------chhccCccee
Confidence 445689999999999999999986 4577899999999999999998653 5789999999
Q ss_pred CccCCCC
Q 042259 595 NPSKAND 601 (745)
Q Consensus 595 n~~~A~~ 601 (745)
++++|.+
T Consensus 551 qVdkAyE 557 (1304)
T KOG1114|consen 551 QVDKAYE 557 (1304)
T ss_pred ehhHHHH
Confidence 9999987
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6e-34 Score=291.23 Aligned_cols=195 Identities=22% Similarity=0.167 Sum_probs=142.5
Q ss_pred CCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHH--HhCCCcEEEEcc
Q 042259 201 PIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAA--VEEGVDVLSISL 278 (745)
Q Consensus 201 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a--~~~g~dVIn~S~ 278 (745)
..|.++|||||||||||. .|++|+++|+..++.. . ....+..+++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-~---~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-K---SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-C---CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 457899999999999987 3677999999766543 2 223456677777 567899999999
Q ss_pred CCCCCCC------hhhHHHHHHHHHhcC-CcEEEEccCCCCCCC-----CCcccCCCceEEEeecccccceEEEEEeCCC
Q 042259 279 GSPSLPF------FADAMATAAFTASQK-GILVSCSAGNSGPNS-----STLANEAPWMLTVGASTIDRSIVALTQLGNQ 346 (745)
Q Consensus 279 G~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~ 346 (745)
|+..... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||.+....
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 9864321 223455555566555 999999999999853 234567788999999531110
Q ss_pred eeeeeeeccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCC
Q 042259 347 ETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDE 426 (745)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 426 (745)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCc
Q 042259 427 LFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGV 506 (745)
Q Consensus 427 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~ 506 (745)
....+.||++|-....++..||||+|||+
T Consensus 164 ---------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~ 192 (247)
T cd07488 164 ---------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGS 192 (247)
T ss_pred ---------------------------------------------------cceecccccccCCCCCCCCceeEEEEeee
Confidence 00234566654332236789999999999
Q ss_pred cEEeccCCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCH------HHHHHHHhccc
Q 042259 507 SILAAWPFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSP------AAIKSAIMTTA 566 (745)
Q Consensus 507 ~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~------~~ik~~L~~TA 566 (745)
+|++ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|+.|+
T Consensus 193 ~i~s--~~---------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 193 NYNL--PD---------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred eEEC--CC---------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 9998 33 57889999999999999999999999887764 46777776653
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=6.5e-31 Score=269.95 Aligned_cols=231 Identities=38% Similarity=0.541 Sum_probs=174.1
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC---CCCCCCCCChhhhhhhhcccccC
Q 042259 145 VIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS---EPPIDNDGHGTHTASTAAGNFVN 221 (745)
Q Consensus 145 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~---~~~~d~~gHGThVAGiiag~~~~ 221 (745)
|+|+|||+|++++||+|...... + ....++.... ....+..+||||||++|++....
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~~-----~---------------~~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~~ 60 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFGG-----G---------------DGGNDDDDNENGPTDPDDGNGHGTHVAGIIAASANN 60 (241)
T ss_pred CEEEEEeCCCCCCCcchhccccC-----c---------------ccccccccCcCCCCCCCCCCCcHHHHHHHHhcCCCC
Confidence 68999999999999987211000 0 0011111100 23457789999999999988533
Q ss_pred CCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHH-hCCCcEEEEccCCCCCCChhhHHHHHHHHHhc
Q 042259 222 GANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAV-EEGVDVLSISLGSPSLPFFADAMATAAFTASQ 299 (745)
Q Consensus 222 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~-~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~ 299 (745)
.. ..|+||+++|+.+|+.. ..+ .....+++++++++ ..+++|||||||..... ....+...+..+.+
T Consensus 61 ~~---------~~g~a~~a~i~~~~~~~-~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~~~~~~~~~~~~~ 129 (241)
T cd00306 61 GG---------GVGVAPGAKLIPVKVLD-GDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PSSALSEAIDYALA 129 (241)
T ss_pred CC---------CEEeCCCCEEEEEEEec-CCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CCHHHHHHHHHHHH
Confidence 21 16999999999999998 444 67888999999999 89999999999987532 23344555556667
Q ss_pred C-CcEEEEccCCCCCCCC---CcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCC
Q 042259 300 K-GILVSCSAGNSGPNSS---TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNS 375 (745)
Q Consensus 300 ~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (745)
+ |+++|+||||.+.... ..++..+++|+||+.+.+.
T Consensus 130 ~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------------------------------- 169 (241)
T cd00306 130 KLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------------------------------- 169 (241)
T ss_pred hcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------------------------------
Confidence 6 9999999999998876 4778899999999953211
Q ss_pred CCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHH
Q 042259 376 SAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAY 455 (745)
Q Consensus 376 ~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 455 (745)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCCeEEEEecceEecCCCCCcee-cccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeeccccc
Q 042259 456 INSTSSPTASIVFKGTVIGKKSAPEVA-VFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISGTSM 534 (745)
Q Consensus 456 ~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSm 534 (745)
... .++++| .|||+.|||.++.+.... ....+..++||||
T Consensus 170 ------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~-------~~~~~~~~~GTS~ 210 (241)
T cd00306 170 ------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT-------GGGGYATLSGTSM 210 (241)
T ss_pred ------------------------CccCCcCCCC--------CCceEEeCcCCccCcccC-------CCCCeEeeccHHH
Confidence 111 344444 466999999999875111 1268899999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHhcc
Q 042259 535 SCPHLSGIAALLKSAHPDWSPAAIKSAIMTT 565 (745)
Q Consensus 535 AaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 565 (745)
|||+|||++||++|++|++++.++|++|++|
T Consensus 211 Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 211 AAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 9999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.7e-24 Score=240.66 Aligned_cols=272 Identities=34% Similarity=0.521 Sum_probs=196.0
Q ss_pred CCCCccC--CCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCC--CCCCCCC
Q 042259 132 NSGFWKD--SNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEP--PIDNDGH 207 (745)
Q Consensus 132 ~~~~~~~--~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~--~~d~~gH 207 (745)
....|.. +.+|+||+|+|||+||+..||+|.+.... .++|...... ..|..+|
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~d~~~h 185 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA-----------------------GGDFVDGDPEPPFLDDNGH 185 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccccc-----------------------ccccccCCCCCCCCCCCCC
Confidence 3457777 89999999999999999999999865211 1344443333 4689999
Q ss_pred hhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCC--CcEEEEccCCCCCC
Q 042259 208 GTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEG--VDVLSISLGSPSLP 284 (745)
Q Consensus 208 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g--~dVIn~S~G~~~~~ 284 (745)
||||+|++++....+ .....|++|+++++.++++....+ ....+++++++++++.+ +++||||+|.....
T Consensus 186 Gt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~~~ 258 (508)
T COG1404 186 GTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSD 258 (508)
T ss_pred cceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCccc
Confidence 999999999842111 112479999999999999983314 67778899999999999 99999999985111
Q ss_pred ChhhHHHHHHHHHhcCC-cEEEEccCCCCCCCC----CcccCC--CceEEEeecccccceEEEEEeCCCeeeeeeeccCC
Q 042259 285 FFADAMATAAFTASQKG-ILVSCSAGNSGPNSS----TLANEA--PWMLTVGASTIDRSIVALTQLGNQETYDGETIFQP 357 (745)
Q Consensus 285 ~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~--p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (745)
.....+..++..+...| +++|+|+||.+.... .++... +.+++||+..
T Consensus 259 ~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~------------------------- 313 (508)
T COG1404 259 SASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD------------------------- 313 (508)
T ss_pred cccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC-------------------------
Confidence 22333444444666666 999999999997753 122222 2555555531
Q ss_pred CCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCc
Q 042259 358 KDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNH 437 (745)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 437 (745)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEe-----cc
Q 042259 438 VLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILA-----AW 512 (745)
Q Consensus 438 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~s-----a~ 512 (745)
..+..+.||++|+.. +.+++|||.+|.+ ++
T Consensus 314 ---------------------------------------~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~ 348 (508)
T COG1404 314 ---------------------------------------LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTL 348 (508)
T ss_pred ---------------------------------------CCCccccccccCCCC------CcceeCCCccccccccceee
Confidence 123678899999752 2299999999988 55
Q ss_pred CCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCC
Q 042259 513 PFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHP-DWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGA 591 (745)
Q Consensus 513 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~ 591 (745)
++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++... . .......++.
T Consensus 349 ~~~~-------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~ 410 (508)
T COG1404 349 PGDG-------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLT-P----------LSGVDNLVGG 410 (508)
T ss_pred eCCc-------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccc-c----------CCcccccccc
Confidence 5410 2499999999999999999999999999 899999999988888730 0 0123345666
Q ss_pred CCCCccCCCC
Q 042259 592 GHVNPSKAND 601 (745)
Q Consensus 592 G~vn~~~A~~ 601 (745)
|..+...+..
T Consensus 411 ~~~~~~~~~~ 420 (508)
T COG1404 411 GLANLDAAAT 420 (508)
T ss_pred Cccccccccc
Confidence 6666555444
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.4e-22 Score=204.14 Aligned_cols=167 Identities=19% Similarity=0.259 Sum_probs=108.1
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCC----C--CC
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPI----D--ND 205 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~----d--~~ 205 (745)
...+|..|++||+|+++|+|.||||-|||++.+ ..--..++|...+..|. | .+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n---------------------ynaeasydfssndpfpyprytddwfn 208 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN---------------------YNAEASYDFSSNDPFPYPRYTDDWFN 208 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc---------------------cCceeecccccCCCCCCCcccchhhh
Confidence 345899999999999999999999999999843 12223556665442222 2 47
Q ss_pred CChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCC
Q 042259 206 GHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE-EGVDVLSISLGSPSLP 284 (745)
Q Consensus 206 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~ 284 (745)
.|||.|||-+++...++. .| .|||.+.++..+|+++ ..+..|+++|-..--+ ...+|.+-|||.....
T Consensus 209 shgtrcagev~aardngi--cg------vgvaydskvagirmld---qpymtdlieansmghep~kihiysaswgptddg 277 (629)
T KOG3526|consen 209 SHGTRCAGEVVAARDNGI--CG------VGVAYDSKVAGIRMLD---QPYMTDLIEANSMGHEPSKIHIYSASWGPTDDG 277 (629)
T ss_pred ccCccccceeeeeccCCc--ee------eeeeeccccceeeecC---CchhhhhhhhcccCCCCceEEEEecccCcCCCC
Confidence 899999998876653321 11 6999999999999998 3345555554221111 2468999999976421
Q ss_pred ----ChhhHHHHHHHHHh-----cCCcEEEEccCCCCCCC-CCcc--cCCCceEEEee
Q 042259 285 ----FFADAMATAAFTAS-----QKGILVSCSAGNSGPNS-STLA--NEAPWMLTVGA 330 (745)
Q Consensus 285 ----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~-~~~~--~~~p~vitVga 330 (745)
...++..+++.+-+ ..|-++|.|.|..|... +... +.+-|.|++-+
T Consensus 278 ktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisins 335 (629)
T KOG3526|consen 278 KTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINS 335 (629)
T ss_pred cccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeeh
Confidence 12233333333333 35779999999988653 2222 34456565544
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=4.7e-17 Score=176.91 Aligned_cols=100 Identities=27% Similarity=0.385 Sum_probs=81.3
Q ss_pred eeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhC---CCcEEEEccCCCCCC---ChhhHHHHHHHHHhcCCcEEEE
Q 042259 233 AAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEE---GVDVLSISLGSPSLP---FFADAMATAAFTASQKGILVSC 306 (745)
Q Consensus 233 ~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~---g~dVIn~S~G~~~~~---~~~~~~~~a~~~a~~~Gi~vV~ 306 (745)
..||||+|+|+.|++.+ .. ...++.++.+++.+ +++|||+|||..... .+.+.+..++.++..+||+||+
T Consensus 83 ~~gvAP~a~i~~~~~~~-~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 83 AGAIAPGANITLYFAPG-TV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHhccCCCeEEEEEECC-cC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 57999999999999987 32 45677888888887 999999999987532 2446677777788999999999
Q ss_pred ccCCCCCCCC-----------CcccCCCceEEEeecccccc
Q 042259 307 SAGNSGPNSS-----------TLANEAPWMLTVGASTIDRS 336 (745)
Q Consensus 307 AAGN~g~~~~-----------~~~~~~p~vitVga~~~~~~ 336 (745)
|+||+|.... .+++.+|++++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999997653 35688999999999876543
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.28 E-value=2.4e-11 Score=114.22 Aligned_cols=118 Identities=31% Similarity=0.443 Sum_probs=93.6
Q ss_pred CCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccc-cCccc
Q 042259 361 PSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVA-DNHVL 439 (745)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~-~~~~~ 439 (745)
.....+++|.+. |...++...+++|||+|| +|+.|.+.+|..+++++||.|+|++|+......... ....+
T Consensus 24 ~~~~~~lv~~g~-------g~~~d~~~~dv~GkIvL~-~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 24 LGKTYELVDAGL-------GTPEDFEGKDVKGKIALI-QRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CCcEEEEEEccC-------CchhccCCCCccceEEEE-ECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 345678888654 344456667899999999 999999999999999999999999988754222211 13578
Q ss_pred cEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCC
Q 042259 440 PAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNT 491 (745)
Q Consensus 440 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~ 491 (745)
|++.|+..+|..|++++.+ +++|.+..+.. ..+.+.++.||||||.-
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999999999999987 66777776655 56778899999999973
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.25 E-value=7e-11 Score=108.82 Aligned_cols=121 Identities=50% Similarity=0.785 Sum_probs=98.0
Q ss_pred EEeCCCeeeeeeeccCCCCCCCCceeeEecCC--CCCCCCccCCCCCCCCcccceEEEEeeCCCc-chhhhhhhHhhcCc
Q 042259 341 TQLGNQETYDGETIFQPKDFPSKQLPLVYPGV--KNSSAAFCLPETLKSIDVKGKVVLCQRGGGT-QRIRKGKDVKDAGG 417 (745)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~-~~~~~~~~~~~~Ga 417 (745)
++++|+.++.|+++++... ..+++++... .......|.+...+..+++|||||| +|+.| .+.+|..+++++||
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc-~~~~~~~~~~k~~~~~~~GA 77 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLC-DRGGNTSRVAKGDAVKAAGG 77 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEE-eCCCCccHHHHHHHHHHcCC
Confidence 5789999999999996543 4567776333 1234578988888889999999999 99999 99999999999999
Q ss_pred eEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEE
Q 042259 418 AAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTAS 465 (745)
Q Consensus 418 ~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 465 (745)
.|+|++++.............+|.+.|+..+|..|++|+++..+++++
T Consensus 78 ~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 78 AGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred cEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999886554333333568999999999999999999987766554
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.86 E-value=3.9e-09 Score=89.16 Aligned_cols=82 Identities=20% Similarity=0.460 Sum_probs=58.5
Q ss_pred eEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEEc
Q 042259 34 TYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISARVE 113 (745)
Q Consensus 34 ~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~ 113 (745)
+|||.|+++..... ....+.+++.+++.+..... .....++.+.|+..|+||+++++++++++|+++|+|++|+|+
T Consensus 1 ~YIV~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D 76 (82)
T PF05922_consen 1 RYIVVFKDDASAAS--SFSSHKSWQASILKSALKSA--SSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPD 76 (82)
T ss_dssp EEEEEE-TTSTHHC--HHHHHHHHHH----HHHHTH---TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEE
T ss_pred CEEEEECCCCCcch--hHHHHHHHHHHHHhhhhhhh--cccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeC
Confidence 69999999865332 24667777776655421100 145789999999999999999999999999999999999999
Q ss_pred cccCCC
Q 042259 114 NILEPQ 119 (745)
Q Consensus 114 ~~~~~~ 119 (745)
+.++++
T Consensus 77 ~~v~l~ 82 (82)
T PF05922_consen 77 QVVSLH 82 (82)
T ss_dssp CEEEE-
T ss_pred ceEecC
Confidence 988653
No 47
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.8e-08 Score=109.18 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=98.4
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCC------CCCCCC
Q 042259 132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSE------PPIDND 205 (745)
Q Consensus 132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~------~~~d~~ 205 (745)
....|..+++|+++.|+|.|.|+...||++... ....+.+++..... +.....
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~---------------------~~~~~s~d~~~~~~~p~~~~~~~~~~ 80 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN---------------------YDPLGSYDVNRHDNDPEPRCDGTNEN 80 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc---------------------cCcceeEeeecCCCCcccccCCCCcc
Confidence 456899999999999999999999999999843 12233344433221 112347
Q ss_pred CChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCC
Q 042259 206 GHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE-EGVDVLSISLGSPSLP 284 (745)
Q Consensus 206 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~ 284 (745)
.|||-||+-.+....+. --..|+++++++..++++. + ...+...+...... ..+++-..|||.....
T Consensus 81 ~~g~~Ca~~~a~~~~~~--------~C~vg~~~~~~~~g~~~l~---~-~v~~~~~~~~~~~~~~~~di~scsw~pddd~ 148 (431)
T KOG3525|consen 81 KHGTRCAGCVAARANNL--------TCGVGVAYNATIGGIRMLA---G-CVSDAVEAPSLGFGPCHIDIYSCSWGPDDDG 148 (431)
T ss_pred ccCCCCCcccccccCCC--------cCCCCcccCccccceeeee---e-ecccceecccccCCCCCceeecCcCCcccCC
Confidence 89999999999875211 1137999999999999987 1 11122222222222 3578999999976421
Q ss_pred ----ChhhHHHHHHHH-----HhcCCcEEEEccCCCCCCCCC
Q 042259 285 ----FFADAMATAAFT-----ASQKGILVSCSAGNSGPNSST 317 (745)
Q Consensus 285 ----~~~~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~~~ 317 (745)
........+... ...+|-+.|+|.||.|.....
T Consensus 149 ~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~ 190 (431)
T KOG3525|consen 149 KTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDS 190 (431)
T ss_pred CcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccc
Confidence 111112222222 236789999999998876543
No 48
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.74 E-value=6.7e-08 Score=86.56 Aligned_cols=92 Identities=18% Similarity=0.287 Sum_probs=74.5
Q ss_pred CCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCc--ccc--ccCc
Q 042259 362 SKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDY--GTV--ADNH 437 (745)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~--~~~--~~~~ 437 (745)
...+|++.... ..+|....+.+.+++|||+|+ +||.|.|.+|..+++++||.++|++|+..... ... ....
T Consensus 19 ~~~~~~~~~~~----~~gC~~~~~~~~~l~gkIaLV-~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 19 ATLLPLRNLTS----SVLCSASDVPPGGLKGKAVVV-MRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred CcceeeecCCC----cCCCCccccCccccCCeEEEE-ECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 34566666553 477998888888999999999 99999999999999999999999999875311 111 2456
Q ss_pred cccEEEEchHhHHHHHHHHhc
Q 042259 438 VLPAVYVSYAAGERIKAYINS 458 (745)
Q Consensus 438 ~~p~~~i~~~~g~~l~~~~~~ 458 (745)
.||+++|+..+|+.|++.+..
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred cccEEEEeHHHHHHHHHHhcc
Confidence 789999999999999988763
No 49
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.70 E-value=1.8e-07 Score=85.35 Aligned_cols=95 Identities=25% Similarity=0.307 Sum_probs=75.3
Q ss_pred ceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcc--c--c-ccCcc
Q 042259 364 QLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYG--T--V-ADNHV 438 (745)
Q Consensus 364 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~--~-~~~~~ 438 (745)
.-++++.... ..++|.+..+...+++|||+|| +||.|.+.+|..+++++||.++|++|+...... . . .....
T Consensus 18 ~~~lv~~~~~--~~~gC~~~~~~~~~~~GkIvLv-~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~ 94 (122)
T cd04816 18 TAPLVPLDPE--RPAGCDASDYDGLDVKGAIVLV-DRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLK 94 (122)
T ss_pred EEEEEEcCCC--CccCCCccccCCCCcCCeEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCe
Confidence 3456664422 2478998888888999999999 999999999999999999999999987653211 1 1 13457
Q ss_pred ccEEEEchHhHHHHHHHHhcCCC
Q 042259 439 LPAVYVSYAAGERIKAYINSTSS 461 (745)
Q Consensus 439 ~p~~~i~~~~g~~l~~~~~~~~~ 461 (745)
+|.++|+..+|+.|++++..+.+
T Consensus 95 iP~~~Is~~~G~~l~~~l~~g~~ 117 (122)
T cd04816 95 VPVGVITKAAGAALRRRLGAGET 117 (122)
T ss_pred eeEEEEcHHHHHHHHHHHcCCCE
Confidence 99999999999999999977654
No 50
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.68 E-value=1.1e-07 Score=85.77 Aligned_cols=88 Identities=22% Similarity=0.276 Sum_probs=71.3
Q ss_pred CCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCC-cccc-------ccCccccEEEEchHh
Q 042259 377 AAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFD-YGTV-------ADNHVLPAVYVSYAA 448 (745)
Q Consensus 377 ~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~-------~~~~~~p~~~i~~~~ 448 (745)
.++|.+.. +..+++|+|+|+ +||.|.|.+|..+++++||.++|+||+.... .... .....||+++|+..+
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv-~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~d 98 (118)
T cd02127 21 LEACEELR-NIHDINGNIALI-ERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKN 98 (118)
T ss_pred cccCCCCC-CccccCCeEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHH
Confidence 46798643 356899999999 9999999999999999999999999886542 1111 123579999999999
Q ss_pred HHHHHHHHhcCCCCeEEE
Q 042259 449 GERIKAYINSTSSPTASI 466 (745)
Q Consensus 449 g~~l~~~~~~~~~~~~~i 466 (745)
|+.|++.+..+..+++.|
T Consensus 99 G~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 99 GYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHcCCceEEee
Confidence 999999999887776654
No 51
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.67 E-value=1e-07 Score=88.44 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=72.4
Q ss_pred CCCccCCCCC--CCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc----cccCccccEEEEchHhH
Q 042259 376 SAAFCLPETL--KSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT----VADNHVLPAVYVSYAAG 449 (745)
Q Consensus 376 ~~~~c~~~~~--~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----~~~~~~~p~~~i~~~~g 449 (745)
..++|.+... .+.++.|+|+|+ +||.|.|.+|..+++++||.++|+||+...+... ......+|.++|+..+|
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV-~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALI-QRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 4578988776 567899999999 9999999999999999999999999987622111 12235789999999999
Q ss_pred HHHHHHHhcCCCCeEE
Q 042259 450 ERIKAYINSTSSPTAS 465 (745)
Q Consensus 450 ~~l~~~~~~~~~~~~~ 465 (745)
+.|++++..+.+.+++
T Consensus 122 ~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 122 MEILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 9999999877655443
No 52
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.60 E-value=8.5e-08 Score=84.45 Aligned_cols=79 Identities=32% Similarity=0.492 Sum_probs=63.9
Q ss_pred CCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCC----CCccccccCccccEEEEchHhHHHH
Q 042259 377 AAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDEL----FDYGTVADNHVLPAVYVSYAAGERI 452 (745)
Q Consensus 377 ~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~~~~p~~~i~~~~g~~l 452 (745)
...|.+......+++|||||| +||.|.|.+|..+++++||.|+|++|... ...........+|+++|+..+|+.|
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv-~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLV-ERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEE-ESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred cccccccccCCccccceEEEE-ecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 345777788889999999999 99999999999999999999999999211 1122234468999999999999999
Q ss_pred HHHH
Q 042259 453 KAYI 456 (745)
Q Consensus 453 ~~~~ 456 (745)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9985
No 53
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.56 E-value=2.7e-07 Score=84.57 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=67.4
Q ss_pred CCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCC-----ccc----c---ccCccccEEEE
Q 042259 377 AAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFD-----YGT----V---ADNHVLPAVYV 444 (745)
Q Consensus 377 ~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~~~----~---~~~~~~p~~~i 444 (745)
.+.|.+... +.+++|||+|+ +||.|.|.+|..+++++||.++|++|+.... ... . .+...||+++|
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv-~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I 104 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIM-ERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFL 104 (126)
T ss_pred hhcccCCCC-ccccCceEEEE-ECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEE
Confidence 467976544 66799999999 9999999999999999999999999875432 110 0 12458999999
Q ss_pred chHhHHHHHHHHhcCCCC
Q 042259 445 SYAAGERIKAYINSTSSP 462 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~ 462 (745)
+..+|+.|++.+......
T Consensus 105 ~~~dG~~L~~~l~~~~~~ 122 (126)
T cd02126 105 FSKEGSKLLAAIKEHQNV 122 (126)
T ss_pred EHHHHHHHHHHHHhCCce
Confidence 999999999999876543
No 54
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.55 E-value=3.4e-07 Score=83.10 Aligned_cols=86 Identities=24% Similarity=0.275 Sum_probs=69.2
Q ss_pred CCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcccc----ccCccccEEEEchHhHHH
Q 042259 376 SAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTV----ADNHVLPAVYVSYAAGER 451 (745)
Q Consensus 376 ~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 451 (745)
..+.|.+.... .+++|||+|| +|+.|.+.+|..+++++||.|+|++|+........ .....+|++.|+.++|..
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~-~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALI-DRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEE-ECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 35679887763 4699999999 99999999999999999999999998866421111 123579999999999999
Q ss_pred HHHHHhcCCCCe
Q 042259 452 IKAYINSTSSPT 463 (745)
Q Consensus 452 l~~~~~~~~~~~ 463 (745)
|++|+..+...+
T Consensus 104 l~~~l~~g~~v~ 115 (118)
T cd04818 104 LKAALAAGGTVT 115 (118)
T ss_pred HHHHHhcCCcEE
Confidence 999998765443
No 55
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.54 E-value=9.5e-07 Score=79.36 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=58.0
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEEC--------CCC----------e-EEEEEcCeEEEeeCCceEEEEEEEEeccC--
Q 042259 659 SSPQTYNRTVTNVGQDNSFYTHHIIV--------PEG----------V-KIIVQPDKISFTEKNQKATFSVTFIRDQN-- 717 (745)
Q Consensus 659 ~~~~~~~~tv~n~~~~~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~g~~~~~~v~~~~~~~-- 717 (745)
....+++++|+|.|+...+|++++.. ..| . .+...+..+++++ |++++++|+|+.+..
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~a-g~s~~v~vti~~p~~~~ 85 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPA-GQSKTVTVTITPPSGLD 85 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-T-TEEEEEEEEEE--GGGH
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECC-CCEEEEEEEEEehhcCC
Confidence 34588999999999999999998771 011 1 5777888999988 999999999999762
Q ss_pred -CCCCeEEEEEEEEc-Cc-eEEEeeEE
Q 042259 718 -SNASSVQGYLSWVS-AT-HTVRSPIA 741 (745)
Q Consensus 718 -~~~~~~~G~~~~~~-~~-~~v~~P~~ 741 (745)
..+.+++|+|.+++ +. ..+++||.
T Consensus 86 ~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 86 ASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp HTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 33589999999994 44 49999985
No 56
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.52 E-value=7e-07 Score=81.64 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=67.4
Q ss_pred CCccCCCCCC--CC----cccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc-----------cccCccc
Q 042259 377 AAFCLPETLK--SI----DVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT-----------VADNHVL 439 (745)
Q Consensus 377 ~~~c~~~~~~--~~----~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----------~~~~~~~ 439 (745)
.++|.+.... +. ...++|+|+ +||.|.|.+|..+++++||.++|++|+....... ..+...+
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv-~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLL-DRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEE-ECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 4678765442 22 378899999 9999999999999999999999999986542211 1123469
Q ss_pred cEEEEchHhHHHHHHHHhcCCCCeE
Q 042259 440 PAVYVSYAAGERIKAYINSTSSPTA 464 (745)
Q Consensus 440 p~~~i~~~~g~~l~~~~~~~~~~~~ 464 (745)
|+++|+..+|+.|++.+..+...++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999987665443
No 57
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.51 E-value=4.6e-07 Score=82.77 Aligned_cols=85 Identities=22% Similarity=0.196 Sum_probs=68.5
Q ss_pred CccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcc--c--cccCccccEEEEchHhHHHHH
Q 042259 378 AFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYG--T--VADNHVLPAVYVSYAAGERIK 453 (745)
Q Consensus 378 ~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~--~~~~~~~p~~~i~~~~g~~l~ 453 (745)
..|.+..+ +.+++|||+|+ +||.|.|.+|..+++++||.++|+||+...+.. . ..+...+|.+.|+..+|+.|+
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv-~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~ 109 (122)
T cd02130 32 LGCDAADY-PASVAGNIALI-ERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALV 109 (122)
T ss_pred CCCCcccC-CcCCCCEEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHH
Confidence 46876555 35799999999 999999999999999999999999988733221 1 123467999999999999999
Q ss_pred HHHhcCCCCeE
Q 042259 454 AYINSTSSPTA 464 (745)
Q Consensus 454 ~~~~~~~~~~~ 464 (745)
+.+.++.+.++
T Consensus 110 ~~l~~g~~v~~ 120 (122)
T cd02130 110 AALANGGEVSA 120 (122)
T ss_pred HHHhcCCcEEE
Confidence 99988765444
No 58
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.49 E-value=5.1e-07 Score=82.93 Aligned_cols=84 Identities=31% Similarity=0.389 Sum_probs=69.4
Q ss_pred CCccCCCC--CCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcc--cc----ccCccccEEEEchHh
Q 042259 377 AAFCLPET--LKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYG--TV----ADNHVLPAVYVSYAA 448 (745)
Q Consensus 377 ~~~c~~~~--~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~----~~~~~~p~~~i~~~~ 448 (745)
...|.++. +...+++|||+|| +|+.|.+.+|..+++++||.|+|++++...... .. .....+|.+.|+..+
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~-~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLV-RRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred eEEEecCcccccCCCccceEEEE-ECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 45687776 6778899999999 999999999999999999999999988753211 11 134679999999999
Q ss_pred HHHHHHHHhcCCC
Q 042259 449 GERIKAYINSTSS 461 (745)
Q Consensus 449 g~~l~~~~~~~~~ 461 (745)
|..|++++.+..+
T Consensus 109 g~~l~~~~~~~~~ 121 (126)
T cd00538 109 GEALLSLLEAGKT 121 (126)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987554
No 59
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.7e-06 Score=102.42 Aligned_cols=161 Identities=22% Similarity=0.238 Sum_probs=89.7
Q ss_pred CccCCCCCCccEEEEec-CCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhh
Q 042259 135 FWKDSNLGKGVIIGVLD-MGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTAS 213 (745)
Q Consensus 135 ~~~~~~~G~gv~VaVID-tGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAG 213 (745)
+++.+.+|||++||||| -|-.+...|+. ..|++..-. ...+.++.. . .-..+|++|=+.
T Consensus 220 l~~~g~tGkG~tIaIid~yG~p~~~~dl~--------~Fd~~~Gip--~~~~~~V~~----i------g~g~~~~~~g~~ 279 (1174)
T COG4934 220 LYESGATGKGETIAIIDAYGDPYNNQDLY--------SFDQQYGIP--NPILSRVTY----I------GPGIGSGTGGAE 279 (1174)
T ss_pred cccCCCCCCCcEEEEEeccCCcccHHHHH--------HHHHhhCCC--CCCceEEEE----e------CCCCCCCCCccc
Confidence 55668889999999999 56555444433 112111100 011122211 0 024567776543
Q ss_pred hhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCC-cEEEEccCCCC-----CCChh
Q 042259 214 TAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGV-DVLSISLGSPS-----LPFFA 287 (745)
Q Consensus 214 iiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~-dVIn~S~G~~~-----~~~~~ 287 (745)
=+ .+.-....-+||+|+|..|-.-. .....+..|+.+....-. -++-.||+... .+.+-
T Consensus 280 E~-----------sLDVE~s~A~AP~A~I~lvvap~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~ 344 (1174)
T COG4934 280 ET-----------SLDVEWSHAMAPKANIDLVVAPN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYA 344 (1174)
T ss_pred cc-----------eeehhhhhccCccCceEEEEcCC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHH
Confidence 11 11111236899999999886632 112222223322222111 34445666532 22244
Q ss_pred hHHHHHHHHHhcCCcEEEEccCCCCCCCCC--------cccCCCceEEEee
Q 042259 288 DAMATAAFTASQKGILVSCSAGNSGPNSST--------LANEAPWMLTVGA 330 (745)
Q Consensus 288 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------~~~~~p~vitVga 330 (745)
+.+..-...+..+|+.+++|+|.+|....+ .++++|++++||.
T Consensus 345 ~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 345 DLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 556666667889999999999999866543 4568999999998
No 60
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.47 E-value=1.9e-06 Score=79.01 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=70.7
Q ss_pred eeeEecCCC-CCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcc-ccccCccccEE
Q 042259 365 LPLVYPGVK-NSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYG-TVADNHVLPAV 442 (745)
Q Consensus 365 ~~~~~~~~~-~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~p~~ 442 (745)
+|++..... ....++|.+...+..+++|||+|+ +||.|.|.+|..+++++||.++|+||+...... ...+...+|.+
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv-~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~ 106 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLV-RRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAA 106 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEE-ECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeE
Confidence 555444333 235678987766656899999999 999999999999999999999999988654321 12223345656
Q ss_pred EEchHhHHHHHHHHhcCCC
Q 042259 443 YVSYAAGERIKAYINSTSS 461 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~ 461 (745)
.+ ..+|+.|++.+..+..
T Consensus 107 ~~-~~~G~~l~~~l~~G~~ 124 (129)
T cd02124 107 VT-PEDGEAWIDALAAGSN 124 (129)
T ss_pred Ee-HHHHHHHHHHHhcCCe
Confidence 55 9999999999976654
No 61
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.44 E-value=8.9e-07 Score=82.60 Aligned_cols=83 Identities=23% Similarity=0.392 Sum_probs=66.9
Q ss_pred CCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcccc------ccCccccEEEEchHhHH
Q 042259 377 AAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTV------ADNHVLPAVYVSYAAGE 450 (745)
Q Consensus 377 ~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~------~~~~~~p~~~i~~~~g~ 450 (745)
.+.|.+.. .+++|+|+|+ +||.|.|.+|..+++++||.++|+||+........ .....||+++|+..+|+
T Consensus 48 ~~gC~~~~---~~~~g~IvLV-~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~ 123 (139)
T cd02132 48 LDCCSPST---SKLSGSIALV-ERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGD 123 (139)
T ss_pred ccccCCCC---cccCCeEEEE-ECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHH
Confidence 46798654 3789999999 99999999999999999999999998764321111 11358999999999999
Q ss_pred HHHHHHhcCCCCe
Q 042259 451 RIKAYINSTSSPT 463 (745)
Q Consensus 451 ~l~~~~~~~~~~~ 463 (745)
.|++.+..+...+
T Consensus 124 ~L~~~l~~g~~Vt 136 (139)
T cd02132 124 ALNKSLDQGKKVE 136 (139)
T ss_pred HHHHHHHcCCcEE
Confidence 9999998766543
No 62
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.41 E-value=1.1e-06 Score=79.19 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=65.3
Q ss_pred CCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCC-ccc-----cccCccccEEEEchHhH
Q 042259 376 SAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFD-YGT-----VADNHVLPAVYVSYAAG 449 (745)
Q Consensus 376 ~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~-----~~~~~~~p~~~i~~~~g 449 (745)
..++|.+. +..+++|||+|+ +||.|.|.+|..+++++||.++|++|+.... ... ......+|+++++..++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV-~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALV-LRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEE-ECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 35789765 568899999999 9999999999999999999999999876532 111 12345899999999999
Q ss_pred HHHHHHHhc
Q 042259 450 ERIKAYINS 458 (745)
Q Consensus 450 ~~l~~~~~~ 458 (745)
+.|+.++..
T Consensus 103 ~~L~~l~~~ 111 (117)
T cd04813 103 HLLSSLLPK 111 (117)
T ss_pred HHHHHhccc
Confidence 999988754
No 63
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.41 E-value=9.6e-07 Score=81.50 Aligned_cols=74 Identities=26% Similarity=0.387 Sum_probs=61.0
Q ss_pred CCCCCcccceEEEEeeCCCcc-----hhhhhhhHhhcCceEEEEecCCC-CCc--ccccc---CccccEEEEchHhHHHH
Q 042259 384 TLKSIDVKGKVVLCQRGGGTQ-----RIRKGKDVKDAGGAAMILMNDEL-FDY--GTVAD---NHVLPAVYVSYAAGERI 452 (745)
Q Consensus 384 ~~~~~~~~g~ivl~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~-~~~--~~~~~---~~~~p~~~i~~~~g~~l 452 (745)
++.+.+++|||+|+ +||.|. |.+|.++++++||.|+|+||+.. .+. ....+ ...+|++.|+..+|+.|
T Consensus 49 d~~~~d~~GkIaLI-~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L 127 (139)
T cd04817 49 SYICGGMAGKICLI-ERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQAL 127 (139)
T ss_pred cccCCCcCccEEEE-ECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHH
Confidence 34556899999999 999999 99999999999999999999972 221 12222 45899999999999999
Q ss_pred HHHHhc
Q 042259 453 KAYINS 458 (745)
Q Consensus 453 ~~~~~~ 458 (745)
++.+..
T Consensus 128 ~~~l~~ 133 (139)
T cd04817 128 LAALGQ 133 (139)
T ss_pred HHHhcC
Confidence 998854
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.32 E-value=2.4e-06 Score=81.01 Aligned_cols=84 Identities=26% Similarity=0.311 Sum_probs=68.8
Q ss_pred CCccCCCCCCC---CcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc-cc-----cCccccEEEEchH
Q 042259 377 AAFCLPETLKS---IDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT-VA-----DNHVLPAVYVSYA 447 (745)
Q Consensus 377 ~~~c~~~~~~~---~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-~~-----~~~~~p~~~i~~~ 447 (745)
.++|.+....+ .++.|+|+|+ +||.|.|.+|..+++++||.++|++|+....... .. ....||+++|+..
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV-~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~ 128 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLI-RRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKS 128 (153)
T ss_pred cccCCCCcccccccccCCCeEEEE-ECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHH
Confidence 46798766544 7899999999 9999999999999999999999999986532221 11 2458999999999
Q ss_pred hHHHHHHHHhcCCC
Q 042259 448 AGERIKAYINSTSS 461 (745)
Q Consensus 448 ~g~~l~~~~~~~~~ 461 (745)
+|+.|+.++.....
T Consensus 129 dg~~L~~~l~~~~~ 142 (153)
T cd02123 129 TGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999987654
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.92 E-value=7.3e-05 Score=68.69 Aligned_cols=91 Identities=22% Similarity=0.280 Sum_probs=69.1
Q ss_pred CCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCc--chhhhhhhHhhcCceEEEEecCCCCCccc-----c-
Q 042259 362 SKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGT--QRIRKGKDVKDAGGAAMILMNDELFDYGT-----V- 433 (745)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----~- 433 (745)
....+++|.+.. .+.++...+++|||+++ +++.| .+.+|..++.+.||.|+|++|+....... .
T Consensus 22 ~~~~~lV~~g~G-------~~~d~~~~~v~GkIvlv-~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 22 EAKGEPVDAGYG-------LPKDFDGLDLEGKIAVV-KRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CeeEEEEEeCCC-------CHHHcCCCCCCCeEEEE-EcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 346778886643 12234456799999999 99999 88999999999999999999865432211 1
Q ss_pred -ccCccccEEEEchHhHHHHHHHHhcCC
Q 042259 434 -ADNHVLPAVYVSYAAGERIKAYINSTS 460 (745)
Q Consensus 434 -~~~~~~p~~~i~~~~g~~l~~~~~~~~ 460 (745)
.....+|++.|+.+||+.|.+.++.+.
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 224579999999999999999987643
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.43 E-value=0.00047 Score=63.89 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=60.7
Q ss_pred CCCcccceEEEEeeCCCc------chhhh-------hhhHhhcCceEEEEecCCC-------CCcccc-ccCccccEEEE
Q 042259 386 KSIDVKGKVVLCQRGGGT------QRIRK-------GKDVKDAGGAAMILMNDEL-------FDYGTV-ADNHVLPAVYV 444 (745)
Q Consensus 386 ~~~~~~g~ivl~~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~-------~~~~~~-~~~~~~p~~~i 444 (745)
...+++|||+++ .++.| .|..| ...+.++||.++|++|... .+.... .....+|++.|
T Consensus 34 ~~~~v~GKIvlv-~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 34 PAGAVKGKIVFF-NQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred chhhcCCeEEEe-cCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 456899999999 99999 88888 6899999999999998532 121111 22356999999
Q ss_pred chHhHHHHHHHHhcCCCCe
Q 042259 445 SYAAGERIKAYINSTSSPT 463 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~~ 463 (745)
+.+|+..|...+..+...+
T Consensus 113 s~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 113 SVEDADMLERLAARGKPIR 131 (134)
T ss_pred chhcHHHHHHHHhCCCCeE
Confidence 9999999999988765443
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.76 E-value=0.0064 Score=58.81 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=57.3
Q ss_pred CCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCC-cc-----------------c-----------c--c-
Q 042259 387 SIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFD-YG-----------------T-----------V--A- 434 (745)
Q Consensus 387 ~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~-----------------~-----------~--~- 434 (745)
..+++|||+|+ ++|.|.+.+|..+++++||+|+|+|++.... .. . . .
T Consensus 51 gv~v~GkIvLv-r~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~ 129 (183)
T cd02128 51 GVSVNGSVVLV-RAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQ 129 (183)
T ss_pred CCCCCCeEEEE-ECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccc
Confidence 56789999999 9999999999999999999999999874210 00 0 0 0
Q ss_pred --cCccccEEEEchHhHHHHHHHHhcC
Q 042259 435 --DNHVLPAVYVSYAAGERIKAYINST 459 (745)
Q Consensus 435 --~~~~~p~~~i~~~~g~~l~~~~~~~ 459 (745)
....||++-|+..++..|+..+...
T Consensus 130 ~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 130 SSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred ccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1235899999999999999998654
No 68
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.61 E-value=0.071 Score=46.70 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=63.7
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEEcCceEEEee
Q 042259 660 SPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWVSATHTVRSP 739 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~~~~~~v~~P 739 (745)
...+.+++|+|.|..+..|++.........++++|..-.+.+ |++.++.|+|.+.... ..+.+.|.+.-++..+.+|
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~P-G~~~~~~V~~~~~~~~--g~~~~~l~i~~e~~~~~i~ 96 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAP-GESVELEVTFSPTKPL--GDYEGSLVITTEGGSFEIP 96 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECC-CCEEEEEEEEEeCCCC--ceEEEEEEEEECCeEEEEE
Confidence 357778899999999999998764423445677777767777 9999999999975543 4688999998777788888
Q ss_pred EEEEe
Q 042259 740 IAIGF 744 (745)
Q Consensus 740 ~~~~~ 744 (745)
+-...
T Consensus 97 v~a~~ 101 (102)
T PF14874_consen 97 VKAEV 101 (102)
T ss_pred EEEEE
Confidence 86653
No 69
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.33 E-value=0.0084 Score=55.68 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=52.1
Q ss_pred CCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCc------------------chhhhhhhHhhcCceEEEEe
Q 042259 362 SKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGT------------------QRIRKGKDVKDAGGAAMILM 423 (745)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~ 423 (745)
....++||.+.+-. ...|...++...|++|||||+ .++.| .+..|...++++||.|+|++
T Consensus 19 ~~~aelVfvGyGi~-a~~~~~dDYag~DVkGKIVlv-~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 19 IKDAPLVFVGYGIK-APELSWDDYAGLDVKGKVVVV-LRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred ccceeeEEecCCcC-CCCCChhhcCCCCCCCcEEEE-EcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 34577888775432 356888889899999999999 88877 46679999999999999999
Q ss_pred cCCC
Q 042259 424 NDEL 427 (745)
Q Consensus 424 n~~~ 427 (745)
++..
T Consensus 97 ~~~~ 100 (142)
T cd04814 97 HELA 100 (142)
T ss_pred eCCC
Confidence 9854
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.17 E-value=0.011 Score=54.64 Aligned_cols=63 Identities=29% Similarity=0.390 Sum_probs=50.7
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcc------------hhhhhhhHhhcCceEEEEecCCC
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQ------------RIRKGKDVKDAGGAAMILMNDEL 427 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~ 427 (745)
..-++||.+.+.. ...|...++...+++|||||+ .++.|. +..|.+++.+.||.|+|++++..
T Consensus 22 v~gelVfvGyG~~-~~~~~~~Dy~~iDVkGKIVlv-~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 22 VEAPLVFVGYGLV-APELGHDDYAGLDVKGKIVVV-LSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ceEeEEEecCCcC-ccCcCHhhccCCCCCCeEEEE-EcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3567777765432 467888888888999999999 888763 66899999999999999998754
No 71
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.92 E-value=0.027 Score=61.04 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=65.0
Q ss_pred CCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCC------CccccccCccccEEEEchHhHHHHHHHHhcC
Q 042259 386 KSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELF------DYGTVADNHVLPAVYVSYAAGERIKAYINST 459 (745)
Q Consensus 386 ~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 459 (745)
....+++|++++ .||.|.|.+|.+.++++||.++++.|+..+ ++......-.||.++++.++++.+.....++
T Consensus 90 ~~~kl~~~~~~v-~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~ 168 (541)
T KOG2442|consen 90 LQSKLSGKVALV-FRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN 168 (541)
T ss_pred CCccccceeEEE-ecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence 345689999999 999999999999999999999999999532 2233344678999999999999999877666
Q ss_pred CCCeEEE
Q 042259 460 SSPTASI 466 (745)
Q Consensus 460 ~~~~~~i 466 (745)
.+.++.+
T Consensus 169 ~~V~~~l 175 (541)
T KOG2442|consen 169 DNVELAL 175 (541)
T ss_pred CeEEEEE
Confidence 6554444
No 72
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.74 E-value=0.023 Score=53.43 Aligned_cols=63 Identities=27% Similarity=0.324 Sum_probs=49.5
Q ss_pred ceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCC------------------cchhhhhhhHhhcCceEEEEecC
Q 042259 364 QLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGG------------------TQRIRKGKDVKDAGGAAMILMND 425 (745)
Q Consensus 364 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~n~ 425 (745)
.-++||.+.+. ....|...++...+++|||||+ .|+. |.+..|..++.+.||.|+|++++
T Consensus 21 tg~lVfvGyGi-~~~~~~~~Dy~giDVkGKIVlv-~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d 98 (151)
T cd04822 21 TAPVVFAGYGI-TAPELGYDDYAGLDVKGKIVLV-LRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNG 98 (151)
T ss_pred eEeEEEecCCc-CccccchhhccCCCCCCeEEEE-EcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeC
Confidence 45777776442 2456877778888999999999 7663 56678999999999999999987
Q ss_pred CCC
Q 042259 426 ELF 428 (745)
Q Consensus 426 ~~~ 428 (745)
...
T Consensus 99 ~~~ 101 (151)
T cd04822 99 PNS 101 (151)
T ss_pred Ccc
Confidence 543
No 73
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.28 E-value=0.047 Score=54.69 Aligned_cols=55 Identities=40% Similarity=0.549 Sum_probs=43.9
Q ss_pred ceeeEecCCCCCCCCccCCCCC-----CCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCC
Q 042259 364 QLPLVYPGVKNSSAAFCLPETL-----KSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDE 426 (745)
Q Consensus 364 ~~~~~~~~~~~~~~~~c~~~~~-----~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 426 (745)
.-++||.+. |...++ ...+++|||+|+ .+|.+.+.+|..+++.+||+|+|+|++.
T Consensus 46 ~g~lVyvny-------G~~~D~~~L~~~gvdv~GKIvLv-r~G~~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 46 TAELVYANY-------GSPEDFEYLEDLGIDVKGKIVIA-RYGGIFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred eEEEEEcCC-------CcHHHHHHHhhcCCCCCCeEEEE-ECCCccHHHHHHHHHHcCCEEEEEEeCc
Confidence 566777663 333333 256899999999 9999988999999999999999999764
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.89 E-value=0.11 Score=43.08 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=37.6
Q ss_pred ccEEEEEEEEecCCCC-eeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCC
Q 042259 660 SPQTYNRTVTNVGQDN-SFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNS 718 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~ 718 (745)
...+++++|+|.|... ...++++..|.|-.+...|..+.--++|++++++++|+++...
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 3678999999999764 5588888999999888888776533459999999999998753
No 75
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=94.69 E-value=0.038 Score=50.65 Aligned_cols=101 Identities=22% Similarity=0.275 Sum_probs=74.4
Q ss_pred ceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc----------c
Q 042259 364 QLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT----------V 433 (745)
Q Consensus 364 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----------~ 433 (745)
.++++... ...+|... .+.-...+.++++ +||+|+|..|..++.++||.++|+.++....... .
T Consensus 65 ~~~lV~ad----Pp~aC~el-rN~~f~~d~vaL~-eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~s 138 (193)
T KOG3920|consen 65 NLELVLAD----PPHACEEL-RNEIFAPDSVALM-ERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDES 138 (193)
T ss_pred CcceeecC----ChhHHHHH-hhcccCCCcEEEE-ecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCccc
Confidence 35555544 34567542 3445678899999 9999999999999999999999998765433221 2
Q ss_pred ccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecc
Q 042259 434 ADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKG 470 (745)
Q Consensus 434 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 470 (745)
.+...+|++++-..+|..++.-+..-..+-+.|..+-
T Consensus 139 q~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 139 QDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred ccccCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 3468999999999999888887777766666665554
No 76
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=94.00 E-value=0.066 Score=49.77 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=35.9
Q ss_pred CcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCC
Q 042259 388 IDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDE 426 (745)
Q Consensus 388 ~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 426 (745)
-+++|||+++ +.|...+..|.++++..||+|+|+|.+.
T Consensus 37 V~v~GkIvi~-RyG~~~RG~Kv~~A~~~GA~GviIYsDP 74 (153)
T cd02131 37 MNVTNQIALL-KLGQAPLLYKLSLLEEAGFGGVLLYVDP 74 (153)
T ss_pred CCccceEEEE-eccCcchHHHHHHHHHCCCeEEEEecCh
Confidence 5799999999 9999999999999999999999999874
No 77
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.91 E-value=0.99 Score=40.65 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=41.7
Q ss_pred cEEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCC
Q 042259 661 PQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNS 718 (745)
Q Consensus 661 ~~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~ 718 (745)
...++++|+|....+.+|++++..++|+++......+++.+ |++.++.|.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~-g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPP-GETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-T-T-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECC-CCEEEEEEEEEECHHH
Confidence 56788999999999999999999988999966557888877 9999999999998764
No 78
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=92.49 E-value=1.2 Score=40.39 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=55.5
Q ss_pred ceeeecCC-ccEEEEEEEEecCCCCeeEEEEEEC----CCCe--------------------EEEEEcCeEEEeeCCceE
Q 042259 652 SFSVKLGS-SPQTYNRTVTNVGQDNSFYTHHIIV----PEGV--------------------KIIVQPDKISFTEKNQKA 706 (745)
Q Consensus 652 s~~~~~~~-~~~~~~~tv~n~~~~~~ty~~~~~~----~~g~--------------------~v~v~p~~~~~~~~g~~~ 706 (745)
.|.+.... ..++++++|+|.++.+.+|.+++.. ..|+ -+++ |..+++++ +|++
T Consensus 18 YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~-~~sk 95 (121)
T PF06030_consen 18 YFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPP-NESK 95 (121)
T ss_pred eEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECC-CCEE
Confidence 35555443 3799999999999999999987642 1110 0122 44477877 9999
Q ss_pred EEEEEEEeccCCCCCeEEEEEEEE
Q 042259 707 TFSVTFIRDQNSNASSVQGYLSWV 730 (745)
Q Consensus 707 ~~~v~~~~~~~~~~~~~~G~~~~~ 730 (745)
+++++++.+...-...+-|.|.++
T Consensus 96 ~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 96 TVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred EEEEEEEcCCCCcCCEEEeeEEEE
Confidence 999999999876557788888775
No 79
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=0.57 Score=49.85 Aligned_cols=80 Identities=25% Similarity=0.222 Sum_probs=61.6
Q ss_pred CccCCCCCC---CCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcccc----ccCccccEEEEchHhHH
Q 042259 378 AFCLPETLK---SIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTV----ADNHVLPAVYVSYAAGE 450 (745)
Q Consensus 378 ~~c~~~~~~---~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~ 450 (745)
++|.+.... .......++++ .||+|.|.+|..+++.+|..++|+||+........ .....++.++++...|+
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI-~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge 141 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALI-RRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGE 141 (348)
T ss_pred cccCccccCccCCCCCcceEEEE-EccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHH
Confidence 456554331 34456778999 99999999999999999999999999876654332 23567889999999999
Q ss_pred HHHHHHhc
Q 042259 451 RIKAYINS 458 (745)
Q Consensus 451 ~l~~~~~~ 458 (745)
.|..|...
T Consensus 142 ~l~~~~~~ 149 (348)
T KOG4628|consen 142 LLSSYAGR 149 (348)
T ss_pred HHHHhhcc
Confidence 99887543
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=87.72 E-value=2.2 Score=40.56 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=42.2
Q ss_pred CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcch-------------------hhhhhhHhhcCceEEEEe
Q 042259 363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQR-------------------IRKGKDVKDAGGAAMILM 423 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~~ 423 (745)
..-++||.+.+-.. ..-...++...|++||||++ .++...+ ..|...+.+.||.|+|++
T Consensus 22 ~~~elVFvGyGi~a-pe~~~dDy~g~DVkGKiVvv-l~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v 99 (157)
T cd04821 22 KDSPLVFVGYGIVA-PEYGWDDYKGLDVKGKTVVI-LVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIV 99 (157)
T ss_pred ccCCEEEeccCccC-cccCcccccCCCcCCcEEEE-EcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEE
Confidence 45667776654221 11223356778999999999 6544322 248899999999999999
Q ss_pred cCC
Q 042259 424 NDE 426 (745)
Q Consensus 424 n~~ 426 (745)
.+.
T Consensus 100 ~~~ 102 (157)
T cd04821 100 HET 102 (157)
T ss_pred eCC
Confidence 764
No 81
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=84.06 E-value=9.8 Score=34.28 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=47.1
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEEC---CC----CeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEE
Q 042259 660 SPQTYNRTVTNVGQDNSFYTHHIIV---PE----GVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWV 730 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~~ty~~~~~~---~~----g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~ 730 (745)
+..+.+++|+|.++.+..+.+.+.. .. .-.+-++|..+.+.+ |+++++.| +.....+.+.-..=+|.+.
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~p-g~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEP-GESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEET-TEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCC-CCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 3457789999999987777777653 11 124678999999988 99999999 7755433333334445555
No 82
>COG1470 Predicted membrane protein [Function unknown]
Probab=82.34 E-value=13 Score=41.02 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=57.5
Q ss_pred ccEEEEEEEEecCCCCee-EEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEE
Q 042259 660 SPQTYNRTVTNVGQDNSF-YTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWV 730 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~ 730 (745)
..++....+.|.|+.+-| -++++..|.|-.+.|.|.++---++|+++++++|++++......-|+=.|.-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 368888999999987644 67999999999999999876555569999999999999875545666666655
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=80.26 E-value=22 Score=39.29 Aligned_cols=70 Identities=11% Similarity=0.253 Sum_probs=51.9
Q ss_pred cEEEEEEEEecCCCCeeEEEEEE-CCCCeEEEEEcC-----eEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEEc
Q 042259 661 PQTYNRTVTNVGQDNSFYTHHII-VPEGVKIIVQPD-----KISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWVS 731 (745)
Q Consensus 661 ~~~~~~tv~n~~~~~~ty~~~~~-~~~g~~v~v~p~-----~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~~ 731 (745)
+..+++++.|.|....+|.+++. .|.|....+.-. ++.+.+ ||+++++|.+.++....-..|.=.|+-+.
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~-gE~kdvtleV~ps~na~pG~Ynv~I~A~s 360 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKP-GEEKDVTLEVYPSLNATPGTYNVTITASS 360 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecC-CCceEEEEEEecCCCCCCCceeEEEEEec
Confidence 67889999999999999999998 788766655433 345656 99999999999987633233333444443
No 84
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=78.15 E-value=8.5 Score=42.98 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=48.5
Q ss_pred cEEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccC
Q 042259 661 PQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQN 717 (745)
Q Consensus 661 ~~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~ 717 (745)
...+++++.|.++.+.+|+++++..++..+...+..+++++ ||+.++.|.+..+..
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~-g~~~~~~v~v~~~~~ 402 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKA-GEKVKLPVFLRTPPD 402 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECC-CCEEEEEEEEEechh
Confidence 56788999999999999999999988888877655788888 999999999998754
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=77.55 E-value=12 Score=32.65 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=41.1
Q ss_pred cEEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEecc
Q 042259 661 PQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQ 716 (745)
Q Consensus 661 ~~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~ 716 (745)
.++..++|+|.++...-|++....|..+ .|.|..-.+.+ |++.++.|++.+..
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i~p-~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGIIEP-GESVEITITFQPFD 71 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE-T-TEEEEEEEEE-SSS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEECC-CCEEEEEEEEEecc
Confidence 4788899999999999999998888765 46799888877 99999999999854
No 86
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=68.60 E-value=45 Score=30.85 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=52.6
Q ss_pred cEEEEEEEEecCCC-CeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEE
Q 042259 661 PQTYNRTVTNVGQD-NSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWV 730 (745)
Q Consensus 661 ~~~~~~tv~n~~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~ 730 (745)
...+.+.|-|..+. -...+++...-.++++--.|..+++.| ++.+++..+|+...... .++||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P-~~~~~i~~~iKVsStet-GvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAP-HGFARIKATIKVSSTET-GVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCC-CcEEEEEEEEEEEeccC-CEEEEEEEEe
Confidence 45566677776654 344566666667788888899999988 99999999999977655 8999999985
No 87
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=59.10 E-value=72 Score=26.96 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=32.4
Q ss_pred CccEEEEEEEEecCCCC-eeEEEEEECCCCeEEEEEcCeE-EEeeCCceEEEEEEEEec
Q 042259 659 SSPQTYNRTVTNVGQDN-SFYTHHIIVPEGVKIIVQPDKI-SFTEKNQKATFSVTFIRD 715 (745)
Q Consensus 659 ~~~~~~~~tv~n~~~~~-~ty~~~~~~~~g~~v~v~p~~~-~~~~~g~~~~~~v~~~~~ 715 (745)
+...+++.+|+|.|... ..+.+.+... |..+ .-..+ .+.+ |+++++++++..+
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L~~-g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSLAP-GESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB-T-TEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCcCC-CcEEEEEEEEEeC
Confidence 34688999999999864 5566665433 2222 11112 5555 9999999999887
No 88
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=54.34 E-value=64 Score=28.18 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=37.0
Q ss_pred CccEEEEEEEEecCCCC-eeEEE-----EEECCCCeE---EEEEcCeEEEeeCCceEEEEEEEEeccC
Q 042259 659 SSPQTYNRTVTNVGQDN-SFYTH-----HIIVPEGVK---IIVQPDKISFTEKNQKATFSVTFIRDQN 717 (745)
Q Consensus 659 ~~~~~~~~tv~n~~~~~-~ty~~-----~~~~~~g~~---v~v~p~~~~~~~~g~~~~~~v~~~~~~~ 717 (745)
+...++.++++|..+.. .+-++ ++..+ |+. .......+++.+ +++.+++++|.+...
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l~p-~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTLKP-GETKSVEVTITPSQY 79 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE-T-TEEEEEEEEE-HHSH
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEEC-CcccccEeEEEcceeeCC-CCEEEEEEEEEceeE
Confidence 34688899999999877 55333 33434 543 455566677777 999999999998664
No 89
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=51.55 E-value=48 Score=27.39 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=30.0
Q ss_pred EEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEEEEEEcC
Q 042259 689 KIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGYLSWVSA 732 (745)
Q Consensus 689 ~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~~~ 732 (745)
.+++.|..+++.. |+++.|++++.+.... . ...+.|++.
T Consensus 4 ~i~i~p~~~~l~~-G~~~~l~a~~~~~~~~---~-~~~v~w~Ss 42 (81)
T smart00635 4 SVTVTPTTASVKK-GLTLQLTATVTPSSAK---V-TGKVTWTSS 42 (81)
T ss_pred EEEEeCCeeEEeC-CCeEEEEEEEECCCCC---c-cceEEEEEC
Confidence 5788999999987 9999999997664432 2 677888854
No 90
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=50.97 E-value=44 Score=24.29 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=25.5
Q ss_pred EEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEE
Q 042259 665 NRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTF 712 (745)
Q Consensus 665 ~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~ 712 (745)
+++++|.|+.+.... .+...-|-. .++...-.+.| ||+..+.|+|
T Consensus 1 ~F~~~N~g~~~L~I~-~v~tsCgCt-~~~~~~~~i~P-Ges~~i~v~y 45 (45)
T PF07610_consen 1 TFEFTNTGDSPLVIT-DVQTSCGCT-TAEYSKKPIAP-GESGKIKVTY 45 (45)
T ss_pred CEEEEECCCCcEEEE-EeeEccCCE-EeeCCcceECC-CCEEEEEEEC
Confidence 378999998754332 222222221 22333334556 9999988875
No 91
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=49.93 E-value=63 Score=26.98 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=11.9
Q ss_pred EEEeeCCceEEEEEEEEeccC
Q 042259 697 ISFTEKNQKATFSVTFIRDQN 717 (745)
Q Consensus 697 ~~~~~~g~~~~~~v~~~~~~~ 717 (745)
.++.+ ||+++|+.++.....
T Consensus 54 ~~l~p-Ge~~~~~~~~~~~~~ 73 (82)
T PF12690_consen 54 ETLEP-GESLTYEETWDLKDL 73 (82)
T ss_dssp EEE-T-T-EEEEEEEESS---
T ss_pred EEECC-CCEEEEEEEECCCCC
Confidence 45656 999999988877653
No 92
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=45.23 E-value=34 Score=41.46 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=36.3
Q ss_pred ccEEEEEEEEecCCCCeeEEEEE--ECCCCeEEEEEc-------CeEEEeeCCceEEEEEEEEeccC
Q 042259 660 SPQTYNRTVTNVGQDNSFYTHHI--IVPEGVKIIVQP-------DKISFTEKNQKATFSVTFIRDQN 717 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~~ty~~~~--~~~~g~~v~v~p-------~~~~~~~~g~~~~~~v~~~~~~~ 717 (745)
+..+++++|+|+|+....-.+++ ..|.+- +. .| .++.+++ ||++++++++...+.
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L~p-Ges~~V~~~l~~~~L 730 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIMLKP-GETQTVSFPIDIEAL 730 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeECC-CCeEEEEEeecHHHh
Confidence 35889999999999876666654 334221 11 12 2334555 999999999988653
No 93
>PLN03080 Probable beta-xylosidase; Provisional
Probab=44.04 E-value=46 Score=40.36 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=34.4
Q ss_pred cEEEEEEEEecCCCCeeEEEEE--ECCCC-----eEEEEEcCeEEEeeCCceEEEEEEEEe
Q 042259 661 PQTYNRTVTNVGQDNSFYTHHI--IVPEG-----VKIIVQPDKISFTEKNQKATFSVTFIR 714 (745)
Q Consensus 661 ~~~~~~tv~n~~~~~~ty~~~~--~~~~g-----~~v~v~p~~~~~~~~g~~~~~~v~~~~ 714 (745)
..+++++|||.|+......+++ ..|.. .+--+--.++.+.+ ||++++++++..
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~-Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTAS-GRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCC-CCEEEEEEEeCc
Confidence 4789999999999877776664 33421 11111122334555 999999998876
No 94
>PRK13203 ureB urease subunit beta; Reviewed
Probab=41.73 E-value=69 Score=27.79 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=12.9
Q ss_pred ccEEEEEEEEecCCCC
Q 042259 660 SPQTYNRTVTNVGQDN 675 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~ 675 (745)
+..+.+++|+|.|+.+
T Consensus 18 gr~~~~l~V~NtGDRP 33 (102)
T PRK13203 18 GRETVTLTVANTGDRP 33 (102)
T ss_pred CCCEEEEEEEeCCCCc
Confidence 3567889999999875
No 95
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=41.05 E-value=85 Score=27.15 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=12.2
Q ss_pred CccEEEEEEEEecCCCC
Q 042259 659 SSPQTYNRTVTNVGQDN 675 (745)
Q Consensus 659 ~~~~~~~~tv~n~~~~~ 675 (745)
.+..+.+++|+|.|+.+
T Consensus 16 ~gr~~~~l~V~N~GDRP 32 (100)
T PF00699_consen 16 AGRERITLEVTNTGDRP 32 (100)
T ss_dssp TTSEEEEEEEEE-SSS-
T ss_pred CCCcEEEEEEEeCCCcc
Confidence 34578889999999975
No 96
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=41.05 E-value=77 Score=27.48 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=12.9
Q ss_pred ccEEEEEEEEecCCCC
Q 042259 660 SPQTYNRTVTNVGQDN 675 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~ 675 (745)
+..+.+++|+|.|+.+
T Consensus 18 gr~~~~l~V~NtGDRp 33 (101)
T cd00407 18 GREAVTLKVKNTGDRP 33 (101)
T ss_pred CCCEEEEEEEeCCCcc
Confidence 4567889999999875
No 97
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=37.61 E-value=88 Score=27.10 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=12.7
Q ss_pred ccEEEEEEEEecCCCC
Q 042259 660 SPQTYNRTVTNVGQDN 675 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~ 675 (745)
+..+.+++|+|.|+.+
T Consensus 18 gr~~~~l~V~NtGDRP 33 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRP 33 (101)
T ss_pred CCcEEEEEEEeCCCcc
Confidence 3467889999999875
No 98
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=36.91 E-value=32 Score=24.48 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=18.6
Q ss_pred HHHHhhCCCCCHHHHHHHHhccc
Q 042259 544 ALLKSAHPDWSPAAIKSAIMTTA 566 (745)
Q Consensus 544 ALl~q~~p~~s~~~ik~~L~~TA 566 (745)
--|++.||++++..|+..|...-
T Consensus 6 ~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 6 QQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHcC
Confidence 45789999999999999997654
No 99
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=35.01 E-value=18 Score=16.27 Aligned_cols=6 Identities=50% Similarity=0.844 Sum_probs=4.2
Q ss_pred cccCCC
Q 042259 483 VFSSRG 488 (745)
Q Consensus 483 ~fSS~G 488 (745)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 100
>PRK13205 ureB urease subunit beta; Reviewed
Probab=33.17 E-value=1.2e+02 Score=28.35 Aligned_cols=16 Identities=13% Similarity=0.217 Sum_probs=13.1
Q ss_pred ccEEEEEEEEecCCCC
Q 042259 660 SPQTYNRTVTNVGQDN 675 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~ 675 (745)
+..+++++|+|.|+.+
T Consensus 18 GR~~i~L~V~NtGDRP 33 (162)
T PRK13205 18 GREAKTIEIINTGDRP 33 (162)
T ss_pred CCcEEEEEEEeCCCCc
Confidence 4567889999999975
No 101
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=32.60 E-value=3e+02 Score=23.06 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=31.5
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEE
Q 042259 660 SPQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTF 712 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~ 712 (745)
....+.++++|.|....++++.-..-. .-.|.++++.+ |++.++...+
T Consensus 18 ~~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v~a-g~~~~~~w~l 65 (89)
T PF05506_consen 18 ATGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTVAA-GQTVSLTWPL 65 (89)
T ss_pred CCCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEECC-CCEEEEEEee
Confidence 345888999999988877777652111 11345567767 8887766655
No 102
>PRK13202 ureB urease subunit beta; Reviewed
Probab=32.19 E-value=1.2e+02 Score=26.37 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=11.9
Q ss_pred EEEEEEEEecCCCC
Q 042259 662 QTYNRTVTNVGQDN 675 (745)
Q Consensus 662 ~~~~~tv~n~~~~~ 675 (745)
.+++++|+|.|+.+
T Consensus 21 ~~~~l~V~NtGDRP 34 (104)
T PRK13202 21 SRLQMRIINAGDRP 34 (104)
T ss_pred ceEEEEEEeCCCCc
Confidence 57889999999975
No 103
>PRK13201 ureB urease subunit beta; Reviewed
Probab=30.81 E-value=1.2e+02 Score=27.70 Aligned_cols=16 Identities=19% Similarity=0.111 Sum_probs=12.8
Q ss_pred ccEEEEEEEEecCCCC
Q 042259 660 SPQTYNRTVTNVGQDN 675 (745)
Q Consensus 660 ~~~~~~~tv~n~~~~~ 675 (745)
+..+.+++|+|.|+.+
T Consensus 18 gr~~~~l~V~NtGDRP 33 (136)
T PRK13201 18 HHPETVIEVENTGDRP 33 (136)
T ss_pred CCCEEEEEEEeCCCcc
Confidence 3567889999999875
No 104
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=28.86 E-value=2.4e+02 Score=24.79 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=30.6
Q ss_pred cEEEEEEEEecCCCCeeEE---EEEECCCCeEEEEEc---------CeEEEeeCCceEEEEEEEEeccCCC
Q 042259 661 PQTYNRTVTNVGQDNSFYT---HHIIVPEGVKIIVQP---------DKISFTEKNQKATFSVTFIRDQNSN 719 (745)
Q Consensus 661 ~~~~~~tv~n~~~~~~ty~---~~~~~~~g~~v~v~p---------~~~~~~~~g~~~~~~v~~~~~~~~~ 719 (745)
-..++++|+|.+++...+. +.+....|-...... ..-++.+ |++.+..+-|..+....
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~p-G~~~~g~l~F~vp~~~~ 106 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKP-GESVTGKLVFEVPKDDK 106 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-T-T-EEEEEEEEEESTT-G
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECC-CCEEEEEEEEEECCCCc
Confidence 5788899999998766543 333333332222111 1234555 88888888888877643
No 105
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=28.46 E-value=3.4e+02 Score=27.65 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=37.8
Q ss_pred cEEEEEEEEecCCCCeeEEEEEE---CC---CC----------eEEEEEcCeEEEeeCCceEEEEEEEEec
Q 042259 661 PQTYNRTVTNVGQDNSFYTHHII---VP---EG----------VKIIVQPDKISFTEKNQKATFSVTFIRD 715 (745)
Q Consensus 661 ~~~~~~tv~n~~~~~~ty~~~~~---~~---~g----------~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 715 (745)
.....++|.|.|+....+.+++. .| .+ -.+-++|..|.+++ |+++.|.+.-...
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~p-g~~q~IRli~lg~ 101 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPA-GTTRTVRVISLQA 101 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECC-CCeEEEEEEEcCC
Confidence 34566889999988777776653 22 11 14678999999988 8888877666553
No 106
>PRK13204 ureB urease subunit beta; Reviewed
Probab=28.02 E-value=1.3e+02 Score=28.03 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=13.5
Q ss_pred CccEEEEEEEEecCCCC
Q 042259 659 SSPQTYNRTVTNVGQDN 675 (745)
Q Consensus 659 ~~~~~~~~tv~n~~~~~ 675 (745)
.+..+++++|+|.|+.+
T Consensus 40 ~gr~~~~l~V~NtGDRP 56 (159)
T PRK13204 40 QGRPRTTLTVRNTGDRP 56 (159)
T ss_pred CCCcEEEEEEEeCCCCc
Confidence 34567889999999975
No 107
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=27.34 E-value=3.2e+02 Score=24.13 Aligned_cols=68 Identities=22% Similarity=0.199 Sum_probs=44.5
Q ss_pred eeeec-cCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCC------CCChhhHHHHHHHHHhcCCcEEE
Q 042259 233 AAGMA-PLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPS------LPFFADAMATAAFTASQKGILVS 305 (745)
Q Consensus 233 ~~GvA-P~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~------~~~~~~~~~~a~~~a~~~Gi~vV 305 (745)
+.... ++++|+.+-- ++||....++.-+++..+.|+++|-+|--... -++. +.+...+.... |+-||
T Consensus 30 F~~y~~~~~elvgf~~---CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~-~~~~~~I~~~~--gi~VV 103 (107)
T PF08821_consen 30 FARYDDEDVELVGFFT---CGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHI-DEIKKIIEEKF--GIEVV 103 (107)
T ss_pred cccCCCCCeEEEEEee---CCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCH-HHHHHHHHHHh--CCCEe
Confidence 34444 4688887643 55888889999999999999999999876432 1343 33433332222 87776
Q ss_pred E
Q 042259 306 C 306 (745)
Q Consensus 306 ~ 306 (745)
.
T Consensus 104 ~ 104 (107)
T PF08821_consen 104 E 104 (107)
T ss_pred e
Confidence 4
No 108
>PRK15019 CsdA-binding activator; Provisional
Probab=27.30 E-value=59 Score=30.51 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=28.0
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 042259 527 TMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKS 560 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~ 560 (745)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3445665 68999999999999999999999876
No 109
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=25.97 E-value=65 Score=29.88 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=28.5
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 042259 527 TMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSA 561 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~ 561 (745)
..+.|.| =|+.|-|.+||+.+.+-+.+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3455666 589999999999999999999998743
No 110
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=25.60 E-value=2.1e+02 Score=31.95 Aligned_cols=74 Identities=26% Similarity=0.287 Sum_probs=54.9
Q ss_pred eeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCC-CcEEEEccCCCC---CC-ChhhHHHHHHHHHhcCCcEEEEccC
Q 042259 235 GMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEG-VDVLSISLGSPS---LP-FFADAMATAAFTASQKGILVSCSAG 309 (745)
Q Consensus 235 GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g-~dVIn~S~G~~~---~~-~~~~~~~~a~~~a~~~Gi~vV~AAG 309 (745)
-=.|.++++.|.+.- .+......|++||+.+-+.+ +|||=.-=||++ -+ +.++.+..+ .....+.||.|-|
T Consensus 158 rR~P~~~viv~pt~V-QG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRA---i~~s~iPvISAVG 233 (440)
T COG1570 158 RRFPSVEVIVYPTLV-QGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARA---IAASRIPVISAVG 233 (440)
T ss_pred hhCCCCeEEEEeccc-cCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHH---HHhCCCCeEeecc
Confidence 346889999887765 44477889999999999887 999999999886 22 334445543 3356789999999
Q ss_pred CCC
Q 042259 310 NSG 312 (745)
Q Consensus 310 N~g 312 (745)
-+-
T Consensus 234 HEt 236 (440)
T COG1570 234 HET 236 (440)
T ss_pred cCC
Confidence 764
No 111
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=25.36 E-value=55 Score=22.09 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=10.7
Q ss_pred chhHHHHHHHHHH
Q 042259 534 MSCPHLSGIAALL 546 (745)
Q Consensus 534 mAaP~VAG~aALl 546 (745)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 4899999997754
No 112
>PRK13198 ureB urease subunit beta; Reviewed
Probab=25.33 E-value=1.8e+02 Score=27.25 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=13.4
Q ss_pred CccEEEEEEEEecCCCC
Q 042259 659 SSPQTYNRTVTNVGQDN 675 (745)
Q Consensus 659 ~~~~~~~~tv~n~~~~~ 675 (745)
.+..+.+++|+|.|+.+
T Consensus 45 ~gr~~~~l~V~NtGDRP 61 (158)
T PRK13198 45 ENKPVTKVKVRNTGDRP 61 (158)
T ss_pred CCCcEEEEEEEeCCCCc
Confidence 34567889999999975
No 113
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=25.10 E-value=2.1e+02 Score=30.49 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=50.7
Q ss_pred eccCceEEeeecccCCCCCCHHHHHHHHHHHHhCC----CcEEEEccCCCC----CCChhhHHHHHHHHHhcCCcEEEEc
Q 042259 236 MAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEG----VDVLSISLGSPS----LPFFADAMATAAFTASQKGILVSCS 307 (745)
Q Consensus 236 vAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g----~dVIn~S~G~~~----~~~~~~~~~~a~~~a~~~Gi~vV~A 307 (745)
-.|.+++..|.+.- .+-....+|++||+.+.+.+ +|||-+-=||++ ..+.+..+..++ .+--+.||.|
T Consensus 38 r~~~~~~~~~p~~v-QG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai---~~~~~Pvisa 113 (319)
T PF02601_consen 38 RNPIVEIILYPASV-QGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAI---AASPIPVISA 113 (319)
T ss_pred hCCCcEEEEEeccc-cccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHH---HhCCCCEEEe
Confidence 34666666665543 33367888999999998765 899999999886 223344455433 3556999999
Q ss_pred cCCCC
Q 042259 308 AGNSG 312 (745)
Q Consensus 308 AGN~g 312 (745)
-|=+-
T Consensus 114 IGHe~ 118 (319)
T PF02601_consen 114 IGHET 118 (319)
T ss_pred cCCCC
Confidence 99763
No 114
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=24.54 E-value=1e+02 Score=21.94 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.1
Q ss_pred HHHHHHhhCCCCCHHHHHHHHhccc
Q 042259 542 IAALLKSAHPDWSPAAIKSAIMTTA 566 (745)
Q Consensus 542 ~aALl~q~~p~~s~~~ik~~L~~TA 566 (745)
.+..|++.||+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999999643
No 115
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=23.96 E-value=7.4e+02 Score=25.46 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=40.6
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEE--CCC---CeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCC
Q 042259 659 SSPQTYNRTVTNVGQDNSFYTHHII--VPE---GVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNA 720 (745)
Q Consensus 659 ~~~~~~~~tv~n~~~~~~ty~~~~~--~~~---g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~ 720 (745)
.+....+++|.|.++. .|-++.- ... ..-+-|+|..+.+.+ ++.+++.|..+....+.+
T Consensus 53 ~~~~~~sl~i~N~~~~--p~LvQsWvd~~~~~~~~pFiVtPPLfRLep-~~~~~lRIi~~~~~LP~D 116 (246)
T PRK15233 53 EDAPSTSFWIMNEKEY--PILVQTQVYNDDKSSKAPFIVTPPILKVES-NARTRLKVIPTSNLFNKN 116 (246)
T ss_pred CCCcEEEEEEEcCCCC--cEEEEEEEecCCCCccCCEEECCCeEEECC-CCceEEEEEECCCCCCcC
Confidence 3457788999997644 4666542 211 124678999999988 999999988876544443
No 116
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=22.99 E-value=3.3e+02 Score=28.88 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=14.8
Q ss_pred eEEEEEEEE-----cCceEEEeeEEEEeC
Q 042259 722 SVQGYLSWV-----SATHTVRSPIAIGFE 745 (745)
Q Consensus 722 ~~~G~~~~~-----~~~~~v~~P~~~~~~ 745 (745)
--.|.+.|. .++..++.-|.|.+|
T Consensus 288 ~~~g~~~W~~~l~~g~~~~l~~~y~v~~P 316 (317)
T PF13598_consen 288 EKDGILEWKVTLPPGESRTLEFSYEVEYP 316 (317)
T ss_pred CCCCEEEEEEEECCCCEEEEEEEEEEEcC
Confidence 345667776 356677766666554
No 117
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=22.79 E-value=2.5e+02 Score=24.28 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=11.4
Q ss_pred cEEEEEEEEecCCCC
Q 042259 661 PQTYNRTVTNVGQDN 675 (745)
Q Consensus 661 ~~~~~~tv~n~~~~~ 675 (745)
..+.+.+|.|.|+.+
T Consensus 19 r~~~~i~V~NtGDRP 33 (106)
T COG0832 19 RPTVTIEVANTGDRP 33 (106)
T ss_pred CcceEEEEeecCCCc
Confidence 456667799999875
No 118
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=22.73 E-value=82 Score=29.24 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=27.8
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 042259 527 TMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKS 560 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~ 560 (745)
..+.|.| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3445666 68999999999999999999999875
No 119
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=22.57 E-value=4.3e+02 Score=26.77 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=38.4
Q ss_pred cCCccEEEEEEEEecCCCCeeEEEEEE--CC---CCeEEEEEcCeEEEeeCCceEEEEEEEEe
Q 042259 657 LGSSPQTYNRTVTNVGQDNSFYTHHII--VP---EGVKIIVQPDKISFTEKNQKATFSVTFIR 714 (745)
Q Consensus 657 ~~~~~~~~~~tv~n~~~~~~ty~~~~~--~~---~g~~v~v~p~~~~~~~~g~~~~~~v~~~~ 714 (745)
+..+....+++|+|.++. .|-++.. .. ....+-|+|..+++.+ |+++.+.|....
T Consensus 35 ~~~~~~~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~fivtPPl~rl~p-g~~q~vRii~~~ 94 (230)
T PRK09918 35 VEESDGEGSINVKNTDSN--PILLYTTLVDLPEDKSKLLLVTPPVARVEP-GQSQQVRFILKS 94 (230)
T ss_pred EECCCCeEEEEEEcCCCC--cEEEEEEEecCCCCCCCCEEEcCCeEEECC-CCceEEEEEECC
Confidence 334456778999999865 4655442 21 1135778999999988 999998877664
No 120
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=22.07 E-value=7.5e+02 Score=24.19 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=53.2
Q ss_pred cCCCceeeecCCc-cEEEEEEEEecCCCCeeEEEEEECC--CC-eEEEEEcCeEEEeeCCceEEEEEEEEecc--CCCCC
Q 042259 648 LNYPSFSVKLGSS-PQTYNRTVTNVGQDNSFYTHHIIVP--EG-VKIIVQPDKISFTEKNQKATFSVTFIRDQ--NSNAS 721 (745)
Q Consensus 648 ln~ps~~~~~~~~-~~~~~~tv~n~~~~~~ty~~~~~~~--~g-~~v~v~p~~~~~~~~g~~~~~~v~~~~~~--~~~~~ 721 (745)
..+|+|-+..-.. ..+..|.+.+-. ....|.-....| +| +.+++......+.. |++-...|++..+. .+.+.
T Consensus 33 ~~~PTf~~YvP~~~~~~~eF~L~d~~-~~~iy~~~~~l~~~~GIv~i~LP~~~~~Le~-gk~Y~W~~~l~Cd~~~~s~~~ 110 (189)
T PF06051_consen 33 SEHPTFWFYVPYTSAETVEFVLQDEQ-GNPIYQTTFPLPQQPGIVSITLPEDQPPLEV-GKTYRWYFSLICDPQDRSDDI 110 (189)
T ss_pred CCCCEEEEEecCCCCcceEEEEecCC-CCEEeEEEEecCCCCCEEEEECCCCCCCCCC-CCeEEEEEEEEECCCCCCCCc
Confidence 4577776654432 455578888766 566887766544 34 45555444455655 88888888888743 23447
Q ss_pred eEEEEEEEEc
Q 042259 722 SVQGYLSWVS 731 (745)
Q Consensus 722 ~~~G~~~~~~ 731 (745)
++.|+|....
T Consensus 111 ~v~G~I~Rv~ 120 (189)
T PF06051_consen 111 FVEGWIQRVE 120 (189)
T ss_pred eEEEEEEEeC
Confidence 9999998764
No 121
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=21.73 E-value=81 Score=24.11 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=22.1
Q ss_pred eeeccccchhHHHHHHHH------HHHhhCCCCCHHHHHHHHh
Q 042259 527 TMISGTSMSCPHLSGIAA------LLKSAHPDWSPAAIKSAIM 563 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aA------Ll~q~~p~~s~~~ik~~L~ 563 (745)
-.+.||=+..=.|....+ -+.+.+|.+++++|+++|.
T Consensus 12 P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 12 PVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp -EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 355666665555544422 3566799999999999884
No 122
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.21 E-value=86 Score=29.19 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=25.4
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 042259 528 MISGTSMSCPHLSGIAALLKSAHPDWSPAAIKS 560 (745)
Q Consensus 528 ~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~ 560 (745)
.+.|=| =|+.|.|.+|++++.+-..||++|..
T Consensus 73 ~F~gdS-dA~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 73 HFFGDS-DARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEeccc-hhHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 344444 36899999999999999999988753
No 123
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=20.92 E-value=97 Score=28.18 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=26.3
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 042259 528 MISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSA 561 (745)
Q Consensus 528 ~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~ 561 (745)
.+.|.|= |+.|-|++||+.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4556554 67999999999999999999998764
No 124
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=20.87 E-value=2.1e+02 Score=23.01 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=20.4
Q ss_pred CccEEEEEEEEecCCCCee-EEEEEECCCCeE
Q 042259 659 SSPQTYNRTVTNVGQDNSF-YTHHIIVPEGVK 689 (745)
Q Consensus 659 ~~~~~~~~tv~n~~~~~~t-y~~~~~~~~g~~ 689 (745)
+...+++++|+|.|..... .++.=..|.|+.
T Consensus 40 Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~ 71 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATNVVVTDTLPAGLT 71 (76)
T ss_pred CCEEEEEEEEEECCCCeeEeEEEEEcCCCCCE
Confidence 3478999999999987532 344444566654
Done!